Correlation between gene mutation status and molecular subtypes - Pancreatic Adenocarcinoma (Primary solid tumor)


		Clinical Features	CN CNMF	METHLYATION CNMF	RPPA CNMF	RPPA CHIERARCHICAL	MRNASEQ CNMF	MRNASEQ CHIERARCHICAL	MIRSEQ CNMF	MIRSEQ CHIERARCHICAL	MIRSEQ MATURE CNMF	MIRSEQ MATURE CHIERARCHICAL
	nMutated (%)	nWild-Type	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test	Fisher's exact test
KRAS	100 (79%)	26	0.00809 (1.00)	0.038 (1.00)	0.841 (1.00)	0.0347 (1.00)	0.0185 (1.00)	1e-05 (0.0329)	0.00103 (1.00)	0.00043 (0.943)	0.00308 (1.00)	1e-05 (0.0329)
TP53	81 (64%)	45	0.00972 (1.00)	0.143 (1.00)	0.575 (1.00)	0.0212 (1.00)	0.176 (1.00)	0.0244 (1.00)	0.0366 (1.00)	0.213 (1.00)	0.218 (1.00)	0.00952 (1.00)
MAMLD1	28 (22%)	98	0.379 (1.00)	0.382 (1.00)	0.617 (1.00)	0.573 (1.00)	0.102 (1.00)	0.112 (1.00)	0.684 (1.00)	0.201 (1.00)	0.531 (1.00)	0.0841 (1.00)
CDKN2A	27 (21%)	99	0.00226 (1.00)	0.0125 (1.00)	0.0464 (1.00)	0.978 (1.00)	0.243 (1.00)	0.202 (1.00)	0.618 (1.00)	0.45 (1.00)	0.121 (1.00)	0.0294 (1.00)
CD99L2	20 (16%)	106	0.756 (1.00)	0.927 (1.00)	0.866 (1.00)	0.669 (1.00)	0.783 (1.00)	0.671 (1.00)	0.169 (1.00)	0.518 (1.00)	0.0965 (1.00)	0.656 (1.00)
IPP	20 (16%)	106	0.0264 (1.00)	0.299 (1.00)	0.436 (1.00)	0.158 (1.00)	0.27 (1.00)	0.193 (1.00)	0.615 (1.00)	0.281 (1.00)	0.488 (1.00)	0.13 (1.00)
IRS1	20 (16%)	106	0.93 (1.00)	1 (1.00)	0.844 (1.00)	0.921 (1.00)	0.886 (1.00)	0.847 (1.00)	0.135 (1.00)	1 (1.00)	0.0279 (1.00)	0.0471 (1.00)
C19ORF55	16 (13%)	110	0.43 (1.00)	0.982 (1.00)	0.831 (1.00)	0.737 (1.00)	0.903 (1.00)	0.563 (1.00)	0.475 (1.00)	0.68 (1.00)	0.436 (1.00)	0.161 (1.00)
C15ORF24	15 (12%)	111	0.0594 (1.00)	1 (1.00)	0.449 (1.00)	0.178 (1.00)	0.123 (1.00)	0.0524 (1.00)	0.662 (1.00)	0.548 (1.00)	0.0349 (1.00)	0.4 (1.00)
QRICH1	14 (11%)	112	0.603 (1.00)	0.242 (1.00)	0.867 (1.00)	0.669 (1.00)	0.723 (1.00)	0.593 (1.00)	0.736 (1.00)	0.728 (1.00)	0.329 (1.00)	0.204 (1.00)
IFT46	13 (10%)	113	0.535 (1.00)	0.979 (1.00)	0.533 (1.00)	0.317 (1.00)	0.972 (1.00)	0.846 (1.00)	0.807 (1.00)	0.636 (1.00)	0.15 (1.00)	0.607 (1.00)
ARHGAP18	12 (10%)	114	0.437 (1.00)	0.402 (1.00)	0.516 (1.00)	0.503 (1.00)	0.144 (1.00)	0.355 (1.00)	0.941 (1.00)	0.831 (1.00)	0.515 (1.00)	0.676 (1.00)
EME2	11 (9%)	115	1 (1.00)	0.631 (1.00)	0.834 (1.00)	0.411 (1.00)	0.648 (1.00)	0.834 (1.00)	0.817 (1.00)	0.363 (1.00)	0.975 (1.00)	0.891 (1.00)
SMAD4	26 (21%)	100	0.393 (1.00)	0.598 (1.00)	0.0785 (1.00)	0.273 (1.00)	0.665 (1.00)	0.0206 (1.00)	0.818 (1.00)	0.422 (1.00)	0.0437 (1.00)	0.0687 (1.00)
NPNT	12 (10%)	114	0.878 (1.00)	0.375 (1.00)	1 (1.00)	0.884 (1.00)	0.791 (1.00)	0.542 (1.00)	0.931 (1.00)	0.119 (1.00)	0.911 (1.00)	0.441 (1.00)
TNFSF9	12 (10%)	114	0.229 (1.00)	0.728 (1.00)	0.733 (1.00)	0.486 (1.00)	0.134 (1.00)	0.846 (1.00)	0.968 (1.00)	1 (1.00)	0.299 (1.00)	0.285 (1.00)
SRP14	9 (7%)	117	0.617 (1.00)	0.678 (1.00)	0.82 (1.00)	0.781 (1.00)	0.722 (1.00)	1 (1.00)	0.743 (1.00)	1 (1.00)	0.794 (1.00)	0.863 (1.00)
SORBS2	17 (13%)	109	0.0035 (1.00)	0.478 (1.00)	0.351 (1.00)	0.592 (1.00)	0.479 (1.00)	0.672 (1.00)	0.703 (1.00)	0.418 (1.00)	0.986 (1.00)	0.632 (1.00)
ERF	13 (10%)	113	0.761 (1.00)	0.25 (1.00)	0.326 (1.00)	0.76 (1.00)	0.268 (1.00)	0.791 (1.00)	0.552 (1.00)	0.544 (1.00)	0.157 (1.00)	0.375 (1.00)
MED9	7 (6%)	119	0.123 (1.00)	0.878 (1.00)	0.403 (1.00)	0.621 (1.00)	0.792 (1.00)	0.156 (1.00)	0.161 (1.00)	0.562 (1.00)	0.155 (1.00)	0.225 (1.00)
BHLHB9	12 (10%)	114	0.209 (1.00)	0.492 (1.00)	0.133 (1.00)	0.275 (1.00)	0.473 (1.00)	0.221 (1.00)	0.466 (1.00)	0.762 (1.00)	0.404 (1.00)	0.136 (1.00)
ZNF185	10 (8%)	116	0.0682 (1.00)	0.197 (1.00)	0.352 (1.00)	0.5 (1.00)	0.0288 (1.00)	0.295 (1.00)	0.0389 (1.00)	0.0702 (1.00)	0.36 (1.00)	0.554 (1.00)
IRX4	10 (8%)	116	0.774 (1.00)	0.721 (1.00)	0.83 (1.00)	0.852 (1.00)	0.681 (1.00)	0.739 (1.00)	0.667 (1.00)	0.649 (1.00)	0.83 (1.00)	0.719 (1.00)
ZMIZ1	13 (10%)	113	0.436 (1.00)	0.356 (1.00)	0.63 (1.00)	0.299 (1.00)	0.533 (1.00)	0.0354 (1.00)	0.286 (1.00)	0.139 (1.00)	0.0687 (1.00)	0.633 (1.00)
EDC4	16 (13%)	110	0.338 (1.00)	0.00574 (1.00)	0.854 (1.00)	0.565 (1.00)	0.351 (1.00)	0.219 (1.00)	0.212 (1.00)	0.108 (1.00)	0.117 (1.00)	0.368 (1.00)
CCDC135	13 (10%)	113	0.567 (1.00)	0.629 (1.00)	0.197 (1.00)	0.287 (1.00)	0.409 (1.00)	0.317 (1.00)	0.412 (1.00)	0.169 (1.00)	0.108 (1.00)	0.589 (1.00)
APP	12 (10%)	114	0.323 (1.00)	0.271 (1.00)	0.982 (1.00)	0.861 (1.00)	0.473 (1.00)	0.568 (1.00)	0.5 (1.00)	0.607 (1.00)	0.0653 (1.00)	0.154 (1.00)
TMC4	20 (16%)	106	0.87 (1.00)	0.893 (1.00)	0.106 (1.00)	0.237 (1.00)	0.445 (1.00)	0.128 (1.00)	0.656 (1.00)	0.34 (1.00)	0.0441 (1.00)	0.486 (1.00)
PHF13	9 (7%)	117	0.312 (1.00)	0.256 (1.00)	0.771 (1.00)	0.198 (1.00)	0.144 (1.00)	0.289 (1.00)	0.16 (1.00)	0.889 (1.00)	0.66 (1.00)	0.191 (1.00)
B4GALT2	10 (8%)	116	0.638 (1.00)	0.762 (1.00)	1 (1.00)	0.849 (1.00)	0.636 (1.00)	0.493 (1.00)	0.685 (1.00)	0.302 (1.00)	0.532 (1.00)	0.642 (1.00)
GAGE2A	6 (5%)	120	0.745 (1.00)	0.23 (1.00)	1 (1.00)	0.743 (1.00)	0.438 (1.00)	0.254 (1.00)	0.0939 (1.00)	0.522 (1.00)	0.361 (1.00)	0.0188 (1.00)
YIPF2	11 (9%)	115	0.608 (1.00)	0.7 (1.00)	0.594 (1.00)	0.954 (1.00)	0.634 (1.00)	0.362 (1.00)	0.896 (1.00)	0.823 (1.00)	0.623 (1.00)	0.936 (1.00)
MED15	12 (10%)	114	0.855 (1.00)	0.741 (1.00)	0.136 (1.00)	0.23 (1.00)	0.622 (1.00)	0.919 (1.00)	0.949 (1.00)	0.763 (1.00)	0.345 (1.00)	0.725 (1.00)
MBD3	9 (7%)	117	0.389 (1.00)	0.622 (1.00)	0.0626 (1.00)	0.365 (1.00)	0.881 (1.00)	0.802 (1.00)	0.581 (1.00)	1 (1.00)	0.219 (1.00)	0.622 (1.00)
WWTR1	12 (10%)	114	0.331 (1.00)	0.138 (1.00)	0.0418 (1.00)	0.0456 (1.00)	0.264 (1.00)	0.455 (1.00)	0.0108 (1.00)	0.326 (1.00)	0.747 (1.00)	0.977 (1.00)
FAM63B	11 (9%)	115	0.634 (1.00)	0.458 (1.00)	0.908 (1.00)	0.717 (1.00)	0.0531 (1.00)	0.478 (1.00)	0.194 (1.00)	0.0373 (1.00)	0.383 (1.00)	0.196 (1.00)
C14ORF43	13 (10%)	113	0.762 (1.00)	0.865 (1.00)	0.387 (1.00)	0.731 (1.00)	0.905 (1.00)	0.274 (1.00)	0.505 (1.00)	0.188 (1.00)	0.561 (1.00)	0.446 (1.00)
ERCC3	9 (7%)	117	0.0212 (1.00)	0.513 (1.00)	0.369 (1.00)	0.783 (1.00)	0.066 (1.00)	0.253 (1.00)	0.265 (1.00)	0.202 (1.00)	0.117 (1.00)	0.417 (1.00)
MYH10	14 (11%)	112	0.227 (1.00)	0.715 (1.00)	0.307 (1.00)	0.648 (1.00)	0.598 (1.00)	0.117 (1.00)	0.8 (1.00)	0.921 (1.00)	0.933 (1.00)	0.976 (1.00)
ZMYM5	13 (10%)	113	0.426 (1.00)	0.00916 (1.00)	0.705 (1.00)	0.671 (1.00)	0.177 (1.00)	0.79 (1.00)	0.106 (1.00)	0.242 (1.00)	0.768 (1.00)	0.036 (1.00)
CDCA8	9 (7%)	117	0.799 (1.00)	0.351 (1.00)	0.405 (1.00)	0.555 (1.00)	0.78 (1.00)	0.574 (1.00)	0.863 (1.00)	0.262 (1.00)	0.441 (1.00)	0.747 (1.00)
PAK1	11 (9%)	115	0.607 (1.00)	0.139 (1.00)	0.621 (1.00)	0.564 (1.00)	0.554 (1.00)	0.24 (1.00)	0.366 (1.00)	1 (1.00)	0.266 (1.00)	0.314 (1.00)
WRN	15 (12%)	111	0.35 (1.00)	0.413 (1.00)	0.642 (1.00)	0.856 (1.00)	0.647 (1.00)	0.867 (1.00)	0.891 (1.00)	0.929 (1.00)	0.522 (1.00)	0.597 (1.00)
CLOCK	12 (10%)	114	0.242 (1.00)	0.89 (1.00)	0.613 (1.00)	0.783 (1.00)	0.838 (1.00)	0.76 (1.00)	0.203 (1.00)	0.907 (1.00)	0.689 (1.00)	0.384 (1.00)
TMEM175	13 (10%)	113	0.974 (1.00)	0.9 (1.00)	0.767 (1.00)	0.805 (1.00)	0.509 (1.00)	0.789 (1.00)	0.288 (1.00)	0.241 (1.00)	0.518 (1.00)	0.266 (1.00)
THBS4	16 (13%)	110	0.651 (1.00)	0.4 (1.00)	0.0843 (1.00)	0.484 (1.00)	0.335 (1.00)	0.581 (1.00)	0.62 (1.00)	0.805 (1.00)	0.202 (1.00)	0.349 (1.00)
TMED10	8 (6%)	118	0.62 (1.00)	0.166 (1.00)	0.00727 (1.00)	0.661 (1.00)	0.092 (1.00)	0.426 (1.00)	0.234 (1.00)	0.589 (1.00)	0.91 (1.00)	0.401 (1.00)
NFIL3	10 (8%)	116	0.534 (1.00)	0.723 (1.00)	0.641 (1.00)	0.324 (1.00)	0.348 (1.00)	0.206 (1.00)	0.306 (1.00)	0.21 (1.00)	0.76 (1.00)	0.703 (1.00)
RGPD5	6 (5%)	120	0.149 (1.00)	0.694 (1.00)	0.247 (1.00)	0.0986 (1.00)	0.812 (1.00)	0.529 (1.00)	0.452 (1.00)	1 (1.00)	0.612 (1.00)	0.855 (1.00)
EMG1	8 (6%)	118	0.284 (1.00)	0.0965 (1.00)	0.352 (1.00)	0.515 (1.00)	0.0807 (1.00)	0.87 (1.00)	0.728 (1.00)	0.64 (1.00)	0.164 (1.00)	0.721 (1.00)
MED12	13 (10%)	113	0.0442 (1.00)	0.735 (1.00)	0.311 (1.00)	0.594 (1.00)	0.113 (1.00)	0.522 (1.00)	0.99 (1.00)	0.599 (1.00)	0.803 (1.00)	0.786 (1.00)
SYT15	11 (9%)	115	0.64 (1.00)	0.585 (1.00)	0.906 (1.00)	0.3 (1.00)	0.572 (1.00)	0.36 (1.00)	0.748 (1.00)	0.324 (1.00)	0.52 (1.00)	0.0322 (1.00)
OTUD4	18 (14%)	108	0.446 (1.00)	0.113 (1.00)	0.916 (1.00)	0.161 (1.00)	0.297 (1.00)	0.614 (1.00)	0.457 (1.00)	0.106 (1.00)	0.736 (1.00)	0.494 (1.00)
KIAA1949	10 (8%)	116	0.588 (1.00)	0.82 (1.00)	0.329 (1.00)	0.843 (1.00)	0.592 (1.00)	0.495 (1.00)	0.804 (1.00)	0.3 (1.00)	0.475 (1.00)	0.719 (1.00)
OR10A7	12 (10%)	114	0.663 (1.00)	0.382 (1.00)	0.068 (1.00)	0.419 (1.00)	0.95 (1.00)	0.685 (1.00)	0.124 (1.00)	0.084 (1.00)	0.796 (1.00)	0.714 (1.00)
SYNGAP1	15 (12%)	111	0.298 (1.00)	0.128 (1.00)	0.357 (1.00)	0.221 (1.00)	0.797 (1.00)	0.526 (1.00)	0.965 (1.00)	0.931 (1.00)	0.617 (1.00)	0.654 (1.00)
TOX4	9 (7%)	117	0.893 (1.00)	0.3 (1.00)	0.301 (1.00)	0.617 (1.00)	0.324 (1.00)	0.518 (1.00)	0.886 (1.00)	0.435 (1.00)	0.429 (1.00)	0.768 (1.00)
CUL4B	13 (10%)	113	0.623 (1.00)	0.749 (1.00)	0.235 (1.00)	0.312 (1.00)	0.93 (1.00)	0.0531 (1.00)	0.903 (1.00)	0.78 (1.00)	0.017 (1.00)	0.517 (1.00)
NFAT5	13 (10%)	113	0.131 (1.00)	0.193 (1.00)	0.503 (1.00)	0.388 (1.00)	0.991 (1.00)	0.48 (1.00)	0.261 (1.00)	0.546 (1.00)	0.525 (1.00)	0.694 (1.00)
OTOF	18 (14%)	108	0.661 (1.00)	0.701 (1.00)	0.353 (1.00)	0.486 (1.00)	0.747 (1.00)	0.105 (1.00)	0.751 (1.00)	0.537 (1.00)	0.163 (1.00)	0.646 (1.00)
SMG7	10 (8%)	116	0.874 (1.00)	0.374 (1.00)	0.0522 (1.00)	0.554 (1.00)	0.471 (1.00)	0.45 (1.00)	0.204 (1.00)	0.149 (1.00)	0.0968 (1.00)	0.798 (1.00)
SLC6A9	10 (8%)	116	0.822 (1.00)	0.844 (1.00)	0.172 (1.00)	0.0313 (1.00)	0.228 (1.00)	0.332 (1.00)	0.863 (1.00)	0.466 (1.00)	0.669 (1.00)	0.176 (1.00)
INTS7	9 (7%)	117	0.959 (1.00)	0.439 (1.00)	0.906 (1.00)	0.715 (1.00)	0.597 (1.00)	0.573 (1.00)	0.605 (1.00)	0.437 (1.00)	0.309 (1.00)	0.621 (1.00)
PASD1	12 (10%)	114	0.035 (1.00)	0.408 (1.00)	0.525 (1.00)	0.208 (1.00)	0.864 (1.00)	0.705 (1.00)	0.758 (1.00)	0.248 (1.00)	0.0756 (1.00)	0.327 (1.00)
BRDT	11 (9%)	115	0.378 (1.00)	0.583 (1.00)	0.671 (1.00)	0.363 (1.00)	0.339 (1.00)	0.837 (1.00)	0.145 (1.00)	0.906 (1.00)	0.674 (1.00)	0.634 (1.00)
CDH3	7 (6%)	119	0.714 (1.00)	0.505 (1.00)	0.483 (1.00)	0.625 (1.00)	0.183 (1.00)	0.255 (1.00)	0.125 (1.00)	1 (1.00)	0.806 (1.00)	0.541 (1.00)
CTAGE5	8 (6%)	118	0.621 (1.00)	0.924 (1.00)	0.67 (1.00)	0.644 (1.00)	0.554 (1.00)	0.779 (1.00)	0.272 (1.00)	0.773 (1.00)	1 (1.00)	0.753 (1.00)
C6ORF165	9 (7%)	117	0.00723 (1.00)	0.778 (1.00)	0.446 (1.00)	0.663 (1.00)	1 (1.00)	0.644 (1.00)	0.386 (1.00)	0.233 (1.00)	0.952 (1.00)	0.944 (1.00)
POP5	6 (5%)	120	0.786 (1.00)	0.114 (1.00)	1 (1.00)	0.528 (1.00)	0.609 (1.00)	0.74 (1.00)	0.663 (1.00)	0.718 (1.00)	0.24 (1.00)	0.267 (1.00)
CEL	7 (6%)	119	0.299 (1.00)	0.16 (1.00)	0.646 (1.00)	0.131 (1.00)	0.207 (1.00)	0.0863 (1.00)	0.0893 (1.00)	0.0275 (1.00)	0.449 (1.00)	0.0296 (1.00)
EIF3C	9 (7%)	117	0.799 (1.00)	0.112 (1.00)	0.188 (1.00)	0.365 (1.00)	0.597 (1.00)	0.367 (1.00)	0.897 (1.00)	0.625 (1.00)	0.882 (1.00)	0.41 (1.00)
NR4A3	7 (6%)	119	0.483 (1.00)	0.952 (1.00)	0.801 (1.00)	0.939 (1.00)	0.827 (1.00)	0.372 (1.00)	0.93 (1.00)	0.485 (1.00)	0.0502 (1.00)	0.718 (1.00)
DPYS	11 (9%)	115	0.638 (1.00)	0.785 (1.00)	0.506 (1.00)	0.84 (1.00)	0.453 (1.00)	0.0584 (1.00)	0.629 (1.00)	0.218 (1.00)	0.484 (1.00)	0.597 (1.00)
LRIG1	11 (9%)	115	0.405 (1.00)	0.333 (1.00)	0.0958 (1.00)	0.532 (1.00)	0.689 (1.00)	0.834 (1.00)	0.107 (1.00)	0.244 (1.00)	0.341 (1.00)	0.504 (1.00)
EPS8L3	8 (6%)	118	0.221 (1.00)	0.598 (1.00)	0.158 (1.00)	0.255 (1.00)	0.602 (1.00)	0.673 (1.00)	0.343 (1.00)	1 (1.00)	0.635 (1.00)	0.926 (1.00)
RIOK1	8 (6%)	118	0.874 (1.00)	0.832 (1.00)	0.569 (1.00)	0.665 (1.00)	0.908 (1.00)	1 (1.00)	0.896 (1.00)	0.879 (1.00)	0.867 (1.00)	0.983 (1.00)
RBM10	11 (9%)	115	0.481 (1.00)	0.424 (1.00)	0.593 (1.00)	0.647 (1.00)	0.944 (1.00)	0.908 (1.00)	0.882 (1.00)	0.726 (1.00)	0.24 (1.00)	0.744 (1.00)
USP40	10 (8%)	116	0.752 (1.00)	0.0998 (1.00)	0.713 (1.00)	1 (1.00)	0.644 (1.00)	0.668 (1.00)	0.151 (1.00)	0.208 (1.00)	0.15 (1.00)	0.276 (1.00)
NAPSA	8 (6%)	118	0.667 (1.00)	0.216 (1.00)	0.243 (1.00)	1 (1.00)	0.454 (1.00)	1 (1.00)	0.524 (1.00)	1 (1.00)	0.34 (1.00)	0.807 (1.00)
GPR25	5 (4%)	121	0.922 (1.00)	0.643 (1.00)	0.243 (1.00)	0.755 (1.00)	0.348 (1.00)	0.293 (1.00)	0.337 (1.00)	0.569 (1.00)	0.94 (1.00)	0.716 (1.00)
SETD1A	11 (9%)	115	0.256 (1.00)	0.925 (1.00)	0.482 (1.00)	0.651 (1.00)	0.528 (1.00)	0.627 (1.00)	0.332 (1.00)	0.908 (1.00)	0.274 (1.00)	0.715 (1.00)
SEC63	8 (6%)	118	0.403 (1.00)	0.311 (1.00)	0.678 (1.00)	0.162 (1.00)	0.471 (1.00)	0.131 (1.00)	0.71 (1.00)	0.877 (1.00)	0.909 (1.00)	0.955 (1.00)
GAS2L2	12 (10%)	114	0.815 (1.00)	0.149 (1.00)	1 (1.00)	0.732 (1.00)	0.644 (1.00)	0.494 (1.00)	0.985 (1.00)	0.901 (1.00)	0.282 (1.00)	0.893 (1.00)
PHF8	11 (9%)	115	0.275 (1.00)	0.607 (1.00)	0.247 (1.00)	0.339 (1.00)	0.417 (1.00)	0.233 (1.00)	0.891 (1.00)	0.148 (1.00)	0.589 (1.00)	0.251 (1.00)
SLC39A5	8 (6%)	118	0.809 (1.00)	0.12 (1.00)	0.669 (1.00)	1 (1.00)	0.557 (1.00)	1 (1.00)	0.342 (1.00)	0.877 (1.00)	0.797 (1.00)	0.894 (1.00)
FAM82A2	8 (6%)	118	0.286 (1.00)	0.378 (1.00)	0.106 (1.00)	0.742 (1.00)	0.351 (1.00)	0.181 (1.00)	0.17 (1.00)	0.227 (1.00)	0.522 (1.00)	0.543 (1.00)
CHGA	11 (9%)	115	0.146 (1.00)	0.751 (1.00)	0.0402 (1.00)	0.0762 (1.00)	0.633 (1.00)	1 (1.00)	0.409 (1.00)	0.551 (1.00)	0.455 (1.00)	0.465 (1.00)
EGR1	7 (6%)	119	0.683 (1.00)	0.877 (1.00)	0.835 (1.00)	0.403 (1.00)	0.181 (1.00)	0.588 (1.00)	0.525 (1.00)	0.64 (1.00)	0.028 (1.00)	0.0544 (1.00)
OLIG3	10 (8%)	116	0.298 (1.00)	0.546 (1.00)	0.562 (1.00)	0.422 (1.00)	0.404 (1.00)	0.232 (1.00)	0.971 (1.00)	0.148 (1.00)	0.0858 (1.00)	0.442 (1.00)
C14ORF49	8 (6%)	118	0.0194 (1.00)	0.889 (1.00)	0.348 (1.00)	0.488 (1.00)	0.801 (1.00)	0.206 (1.00)	0.177 (1.00)	0.263 (1.00)	0.867 (1.00)	0.283 (1.00)
TOB1	6 (5%)	120	0.534 (1.00)	1 (1.00)	0.376 (1.00)	0.0397 (1.00)	0.882 (1.00)	1 (1.00)	0.617 (1.00)	0.427 (1.00)	0.813 (1.00)	0.378 (1.00)
MEPCE	10 (8%)	116	0.903 (1.00)	0.76 (1.00)	0.669 (1.00)	0.849 (1.00)	0.393 (1.00)	0.369 (1.00)	0.0806 (1.00)	0.523 (1.00)	0.277 (1.00)	0.118 (1.00)
TXLNG	7 (6%)	119	0.0358 (1.00)	0.198 (1.00)	0.654 (1.00)	0.397 (1.00)	0.568 (1.00)	0.507 (1.00)	0.485 (1.00)	0.113 (1.00)	0.0292 (1.00)	0.3 (1.00)
TTK	12 (10%)	114	0.346 (1.00)	0.952 (1.00)	0.16 (1.00)	0.916 (1.00)	0.922 (1.00)	0.921 (1.00)	0.941 (1.00)	0.912 (1.00)	0.569 (1.00)	0.707 (1.00)
TMCO1	8 (6%)	118	0.484 (1.00)	0.312 (1.00)	0.0665 (1.00)	0.139 (1.00)	0.911 (1.00)	0.885 (1.00)	0.96 (1.00)	0.877 (1.00)	0.605 (1.00)	0.898 (1.00)
NUDT11	9 (7%)	117	0.147 (1.00)	0.32 (1.00)	0.328 (1.00)	0.303 (1.00)	0.596 (1.00)	1 (1.00)	0.909 (1.00)	0.709 (1.00)	0.771 (1.00)	0.957 (1.00)
PTPRF	13 (10%)	113	0.385 (1.00)	0.628 (1.00)	0.708 (1.00)	0.914 (1.00)	0.0385 (1.00)	0.0208 (1.00)	0.527 (1.00)	0.596 (1.00)	0.558 (1.00)	0.369 (1.00)
YTHDF1	8 (6%)	118	0.318 (1.00)	0.232 (1.00)	0.486 (1.00)	0.639 (1.00)	0.781 (1.00)	0.372 (1.00)	0.19 (1.00)	0.355 (1.00)	0.547 (1.00)	0.135 (1.00)
AAMP	6 (5%)	120	0.663 (1.00)	0.287 (1.00)	0.554 (1.00)	0.494 (1.00)	0.0967 (1.00)	0.0331 (1.00)	0.113 (1.00)	0.29 (1.00)	0.75 (1.00)	0.293 (1.00)
RAI1	6 (5%)	120	0.935 (1.00)	0.531 (1.00)	0.353 (1.00)	0.311 (1.00)	0.00249 (1.00)	0.123 (1.00)	0.235 (1.00)	0.235 (1.00)	0.105 (1.00)	0.188 (1.00)
PDZD7	7 (6%)	119	0.0363 (1.00)	0.063 (1.00)	0.569 (1.00)	1 (1.00)	0.0276 (1.00)	0.87 (1.00)	0.00889 (1.00)	0.485 (1.00)	0.0383 (1.00)	0.0992 (1.00)
F8	12 (10%)	114	0.756 (1.00)	0.144 (1.00)	0.435 (1.00)	0.473 (1.00)	0.804 (1.00)	0.383 (1.00)	0.454 (1.00)	0.914 (1.00)	0.494 (1.00)	0.725 (1.00)
CACNA1D	16 (13%)	110	0.821 (1.00)	0.546 (1.00)	0.308 (1.00)	0.779 (1.00)	0.341 (1.00)	0.543 (1.00)	0.213 (1.00)	0.415 (1.00)	0.326 (1.00)	0.552 (1.00)
IFNGR2	7 (6%)	119	0.371 (1.00)	0.359 (1.00)	0.955 (1.00)	1 (1.00)	0.581 (1.00)	0.0564 (1.00)	0.123 (1.00)	1 (1.00)	0.577 (1.00)	0.808 (1.00)
ALS2CR11	8 (6%)	118	0.874 (1.00)	0.749 (1.00)	0.651 (1.00)	0.688 (1.00)	0.53 (1.00)	0.626 (1.00)	0.445 (1.00)	0.511 (1.00)	0.0678 (1.00)	0.42 (1.00)
OSBPL1A	9 (7%)	117	0.926 (1.00)	0.181 (1.00)	0.122 (1.00)	0.717 (1.00)	0.256 (1.00)	0.894 (1.00)	0.439 (1.00)	0.263 (1.00)	1 (1.00)	0.407 (1.00)
SLC24A1	6 (5%)	120	1 (1.00)	0.235 (1.00)	0.483 (1.00)	0.622 (1.00)	0.567 (1.00)	0.0549 (1.00)	0.915 (1.00)	0.347 (1.00)	0.699 (1.00)	0.122 (1.00)
PDZD2	13 (10%)	113	0.625 (1.00)	0.844 (1.00)	0.437 (1.00)	0.404 (1.00)	0.33 (1.00)	0.924 (1.00)	0.415 (1.00)	0.915 (1.00)	0.542 (1.00)	0.861 (1.00)
CIR1	5 (4%)	121	0.517 (1.00)	0.226 (1.00)	0.105 (1.00)	0.744 (1.00)	0.639 (1.00)	0.705 (1.00)	0.439 (1.00)	0.822 (1.00)	0.941 (1.00)	0.717 (1.00)
ZNF184	10 (8%)	116	0.902 (1.00)	0.32 (1.00)	0.203 (1.00)	0.362 (1.00)	0.171 (1.00)	0.906 (1.00)	0.0243 (1.00)	0.811 (1.00)	0.301 (1.00)	0.527 (1.00)
RBM15B	7 (6%)	119	1 (1.00)	0.912 (1.00)	0.819 (1.00)	0.909 (1.00)	0.724 (1.00)	0.371 (1.00)	0.318 (1.00)	0.486 (1.00)	0.271 (1.00)	0.235 (1.00)
ATRX	17 (13%)	109	0.963 (1.00)	0.339 (1.00)	0.627 (1.00)	0.834 (1.00)	0.673 (1.00)	0.774 (1.00)	0.565 (1.00)	0.874 (1.00)	0.995 (1.00)	0.218 (1.00)
SBNO1	11 (9%)	115	0.817 (1.00)	0.818 (1.00)	0.652 (1.00)	0.472 (1.00)	0.471 (1.00)	0.268 (1.00)	0.598 (1.00)	0.321 (1.00)	0.77 (1.00)	0.653 (1.00)
APOBEC4	6 (5%)	120	0.148 (1.00)	0.0933 (1.00)	0.241 (1.00)	0.277 (1.00)	0.0875 (1.00)	0.625 (1.00)	0.361 (1.00)	0.718 (1.00)	0.458 (1.00)	0.665 (1.00)
ST6GALNAC5	12 (10%)	114	0.707 (1.00)	0.819 (1.00)	0.779 (1.00)	0.966 (1.00)	1 (1.00)	0.921 (1.00)	0.932 (1.00)	0.832 (1.00)	0.665 (1.00)	0.64 (1.00)
OFD1	7 (6%)	119	0.183 (1.00)	0.525 (1.00)	0.049 (1.00)	0.0391 (1.00)	0.397 (1.00)	1 (1.00)	0.266 (1.00)	1 (1.00)	0.271 (1.00)	0.832 (1.00)
NAP1L2	8 (6%)	118	0.773 (1.00)	0.112 (1.00)	0.367 (1.00)	0.579 (1.00)	0.0152 (1.00)	0.269 (1.00)	0.699 (1.00)	0.0882 (1.00)	0.131 (1.00)	0.372 (1.00)
AFTPH	9 (7%)	117	0.398 (1.00)	0.733 (1.00)	0.306 (1.00)	0.971 (1.00)	0.711 (1.00)	0.646 (1.00)	0.192 (1.00)	0.889 (1.00)	0.338 (1.00)	0.942 (1.00)
SYNCRIP	5 (4%)	121	0.214 (1.00)	0.719 (1.00)	0.59 (1.00)	1 (1.00)	0.121 (1.00)	0.459 (1.00)	0.289 (1.00)	0.455 (1.00)	0.579 (1.00)	0.345 (1.00)
RNF43	9 (7%)	117	0.199 (1.00)	0.00842 (1.00)	0.116 (1.00)	0.194 (1.00)	0.673 (1.00)	0.141 (1.00)	0.445 (1.00)	0.0375 (1.00)	0.519 (1.00)	0.357 (1.00)
PRRG1	6 (5%)	120	0.0501 (1.00)	0.114 (1.00)	0.596 (1.00)	0.909 (1.00)	0.519 (1.00)	0.164 (1.00)	0.751 (1.00)	0.72 (1.00)	0.904 (1.00)	0.908 (1.00)
HSD17B7	8 (6%)	118	0.417 (1.00)	0.423 (1.00)	0.677 (1.00)	0.654 (1.00)	0.268 (1.00)	0.235 (1.00)	0.895 (1.00)	0.31 (1.00)	1 (1.00)	0.511 (1.00)
HTATSF1	9 (7%)	117	0.474 (1.00)	0.127 (1.00)	0.129 (1.00)	0.492 (1.00)	0.0997 (1.00)	0.322 (1.00)	0.0832 (1.00)	0.0636 (1.00)	0.259 (1.00)	0.0693 (1.00)
PRDM8	8 (6%)	118	0.556 (1.00)	0.925 (1.00)	0.467 (1.00)	0.195 (1.00)	0.822 (1.00)	0.32 (1.00)	0.586 (1.00)	1 (1.00)	0.103 (1.00)	0.964 (1.00)
TIGD6	7 (6%)	119	0.459 (1.00)	0.911 (1.00)	0.668 (1.00)	0.643 (1.00)	0.787 (1.00)	0.764 (1.00)	0.715 (1.00)	0.484 (1.00)	0.527 (1.00)	0.702 (1.00)
CLCC1	6 (5%)	120	0.194 (1.00)	0.0063 (1.00)			0.00442 (1.00)	1 (1.00)	0.0836 (1.00)	0.841 (1.00)	0.159 (1.00)	0.523 (1.00)
MKL1	7 (6%)	119	0.716 (1.00)	0.165 (1.00)	0.355 (1.00)	0.435 (1.00)	0.248 (1.00)	1 (1.00)	0.0735 (1.00)	0.29 (1.00)	0.084 (1.00)	0.208 (1.00)
SFRS2IP	11 (9%)	115	0.083 (1.00)	0.526 (1.00)	0.313 (1.00)	0.04 (1.00)	0.316 (1.00)	0.82 (1.00)	0.0952 (1.00)	0.807 (1.00)	0.989 (1.00)	0.804 (1.00)
PAK3	12 (10%)	114	0.153 (1.00)	0.697 (1.00)	0.405 (1.00)	0.772 (1.00)	0.79 (1.00)	0.156 (1.00)	0.978 (1.00)	0.202 (1.00)	0.14 (1.00)	0.505 (1.00)
RTKN2	8 (6%)	118	0.601 (1.00)	0.598 (1.00)	0.862 (1.00)	0.805 (1.00)	0.331 (1.00)	0.777 (1.00)	0.541 (1.00)	1 (1.00)	0.749 (1.00)	0.883 (1.00)
TEX2	9 (7%)	117	0.725 (1.00)	0.776 (1.00)	0.141 (1.00)	0.277 (1.00)	0.736 (1.00)	0.646 (1.00)	0.582 (1.00)	0.891 (1.00)	0.232 (1.00)	0.899 (1.00)
TMEM41A	6 (5%)	120	0.744 (1.00)	0.555 (1.00)			0.766 (1.00)	1 (1.00)	0.18 (1.00)	1 (1.00)	0.664 (1.00)	0.423 (1.00)
DHX57	11 (9%)	115	0.565 (1.00)	0.0321 (1.00)	0.0914 (1.00)	0.425 (1.00)	0.593 (1.00)	1 (1.00)	0.545 (1.00)	0.609 (1.00)	0.5 (1.00)	0.964 (1.00)
UHRF1BP1	7 (6%)	119	0.159 (1.00)	0.565 (1.00)	0.241 (1.00)	0.9 (1.00)	0.328 (1.00)	0.434 (1.00)	0.47 (1.00)	0.558 (1.00)	0.095 (1.00)	0.516 (1.00)
NEDD4L	10 (8%)	116	0.774 (1.00)	0.0899 (1.00)	0.0756 (1.00)	0.807 (1.00)	0.0107 (1.00)	0.368 (1.00)	0.23 (1.00)	0.653 (1.00)	0.736 (1.00)	0.924 (1.00)
SMCR7	7 (6%)	119	0.0301 (1.00)	1 (1.00)	0.691 (1.00)	0.742 (1.00)	0.672 (1.00)	0.871 (1.00)	0.934 (1.00)	0.869 (1.00)	0.0951 (1.00)	0.502 (1.00)
PUM2	7 (6%)	119	0.596 (1.00)	0.769 (1.00)	0.486 (1.00)	0.625 (1.00)	0.521 (1.00)	0.157 (1.00)	0.0278 (1.00)	0.562 (1.00)	0.639 (1.00)	0.2 (1.00)
IL1R2	6 (5%)	120	0.785 (1.00)	0.0989 (1.00)	0.239 (1.00)	0.848 (1.00)	0.88 (1.00)	0.738 (1.00)	0.126 (1.00)	0.523 (1.00)	0.962 (1.00)	0.908 (1.00)
SLC22A9	8 (6%)	118	0.366 (1.00)	0.616 (1.00)	0.86 (1.00)	0.662 (1.00)	0.521 (1.00)	0.155 (1.00)	0.96 (1.00)	0.309 (1.00)	0.722 (1.00)	0.25 (1.00)
MAGEA10	6 (5%)	120	0.785 (1.00)	1 (1.00)	0.0796 (1.00)	0.0792 (1.00)	0.241 (1.00)	0.738 (1.00)	0.43 (1.00)	0.618 (1.00)	0.555 (1.00)	0.458 (1.00)
PTPLAD2	6 (5%)	120	0.88 (1.00)	0.846 (1.00)			0.291 (1.00)	0.621 (1.00)	1 (1.00)	0.718 (1.00)	0.791 (1.00)	0.978 (1.00)
HERC5	6 (5%)	120	0.04 (1.00)	0.0428 (1.00)	0.405 (1.00)	0.622 (1.00)	0.51 (1.00)	0.376 (1.00)	0.0959 (1.00)	0.523 (1.00)	0.116 (1.00)	0.371 (1.00)
WDR67	5 (4%)	121	0.797 (1.00)	0.224 (1.00)	0.011 (1.00)	0.354 (1.00)	0.492 (1.00)	0.702 (1.00)	0.924 (1.00)	0.279 (1.00)	0.58 (1.00)	0.797 (1.00)
TMEM40	6 (5%)	120	0.433 (1.00)	0.765 (1.00)	0.24 (1.00)	0.182 (1.00)	0.921 (1.00)	1 (1.00)	0.827 (1.00)	0.427 (1.00)	0.273 (1.00)	0.525 (1.00)
UNC5A	8 (6%)	118	0.447 (1.00)	0.636 (1.00)	0.24 (1.00)	0.783 (1.00)	0.743 (1.00)	0.156 (1.00)	0.161 (1.00)	0.868 (1.00)	0.99 (1.00)	0.606 (1.00)
AARS2	7 (6%)	119	0.746 (1.00)	0.913 (1.00)	0.612 (1.00)	0.784 (1.00)	0.0942 (1.00)	0.188 (1.00)	0.398 (1.00)	1 (1.00)	0.375 (1.00)	0.541 (1.00)
PDILT	9 (7%)	117	0.8 (1.00)	0.753 (1.00)	0.467 (1.00)	0.839 (1.00)	0.696 (1.00)	0.576 (1.00)	0.583 (1.00)	0.705 (1.00)	0.413 (1.00)	0.525 (1.00)
PTPN21	8 (6%)	118	0.283 (1.00)	0.801 (1.00)	0.954 (1.00)	0.847 (1.00)	0.0839 (1.00)	0.887 (1.00)	0.0795 (1.00)	0.59 (1.00)	0.033 (1.00)	0.218 (1.00)
HIBCH	5 (4%)	121	0.559 (1.00)	0.282 (1.00)	0.891 (1.00)	0.203 (1.00)	0.787 (1.00)	0.18 (1.00)	0.194 (1.00)	0.456 (1.00)	0.0792 (1.00)	0.542 (1.00)
C16ORF79	5 (4%)	121	0.694 (1.00)	0.468 (1.00)			0.595 (1.00)	0.849 (1.00)	0.437 (1.00)	0.822 (1.00)	0.456 (1.00)	0.673 (1.00)
KIAA0430	9 (7%)	117	0.924 (1.00)	0.802 (1.00)	0.545 (1.00)	0.334 (1.00)	0.765 (1.00)	0.647 (1.00)	0.852 (1.00)	0.625 (1.00)	0.669 (1.00)	0.505 (1.00)
NOX5	6 (5%)	120	0.307 (1.00)	0.766 (1.00)	0.955 (1.00)	0.849 (1.00)	0.81 (1.00)	1 (1.00)	0.941 (1.00)	1 (1.00)	0.939 (1.00)	1 (1.00)
NF2	5 (4%)	121	0.795 (1.00)	0.761 (1.00)	0.402 (1.00)	0.822 (1.00)	0.492 (1.00)	0.701 (1.00)	0.287 (1.00)	0.823 (1.00)	0.171 (1.00)	0.413 (1.00)
EPHB6	7 (6%)	119	1 (1.00)	0.358 (1.00)	0.444 (1.00)	0.662 (1.00)	0.938 (1.00)	1 (1.00)	0.105 (1.00)	0.352 (1.00)	0.638 (1.00)	0.249 (1.00)
PRMT8	8 (6%)	118	0.776 (1.00)	0.297 (1.00)	0.197 (1.00)	0.205 (1.00)	0.158 (1.00)	0.267 (1.00)	0.0798 (1.00)	0.4 (1.00)	0.376 (1.00)	0.266 (1.00)
TNRC6C	9 (7%)	117	0.617 (1.00)	0.0648 (1.00)	0.0612 (1.00)	0.107 (1.00)	0.345 (1.00)	0.627 (1.00)	0.123 (1.00)	0.877 (1.00)	0.94 (1.00)	0.975 (1.00)
ZC3H4	8 (6%)	118	0.911 (1.00)	0.841 (1.00)	0.61 (1.00)	0.597 (1.00)	0.812 (1.00)	0.308 (1.00)	0.482 (1.00)	1 (1.00)	0.635 (1.00)	1 (1.00)
NRD1	9 (7%)	117	0.597 (1.00)	0.801 (1.00)	0.0602 (1.00)	0.0279 (1.00)	0.882 (1.00)	0.803 (1.00)	0.805 (1.00)	0.793 (1.00)	0.759 (1.00)	0.425 (1.00)
ZNF552	6 (5%)	120	0.0212 (1.00)	0.895 (1.00)	0.0846 (1.00)	0.623 (1.00)	0.151 (1.00)	0.375 (1.00)	0.0292 (1.00)	0.521 (1.00)	0.351 (1.00)	0.682 (1.00)
BCAS1	5 (4%)	121	1 (1.00)	0.0684 (1.00)	0.35 (1.00)	0.495 (1.00)	0.133 (1.00)	0.7 (1.00)	0.858 (1.00)	1 (1.00)	0.669 (1.00)	0.345 (1.00)
SERTAD1	6 (5%)	120	0.831 (1.00)	0.509 (1.00)	0.201 (1.00)	0.14 (1.00)	0.971 (1.00)	0.625 (1.00)	0.969 (1.00)	0.144 (1.00)	0.604 (1.00)	0.664 (1.00)
GLCCI1	6 (5%)	120	0.409 (1.00)	0.303 (1.00)	0.691 (1.00)	1 (1.00)	0.0967 (1.00)	0.739 (1.00)	0.275 (1.00)	0.842 (1.00)	0.0548 (1.00)	0.203 (1.00)
WASF3	8 (6%)	118	0.6 (1.00)	0.829 (1.00)	0.833 (1.00)	0.837 (1.00)	0.591 (1.00)	1 (1.00)	0.78 (1.00)	0.877 (1.00)	0.395 (1.00)	1 (1.00)
WDR5	4 (3%)	122	0.0778 (1.00)	0.053 (1.00)			0.0804 (1.00)	0.0323 (1.00)	0.36 (1.00)	0.0252 (1.00)	0.637 (1.00)	0.205 (1.00)
FGF10	6 (5%)	120	0.208 (1.00)	0.472 (1.00)	0.668 (1.00)	0.49 (1.00)	0.946 (1.00)	0.738 (1.00)	0.943 (1.00)	0.426 (1.00)	0.941 (1.00)	0.854 (1.00)
FAM155B	4 (3%)	122	1 (1.00)	0.0672 (1.00)			0.724 (1.00)	0.198 (1.00)	0.333 (1.00)	0.211 (1.00)	0.718 (1.00)	0.221 (1.00)
RBM12	6 (5%)	120	0.629 (1.00)	0.156 (1.00)	0.566 (1.00)	0.166 (1.00)	0.311 (1.00)	0.62 (1.00)	0.552 (1.00)	0.72 (1.00)	0.868 (1.00)	0.909 (1.00)
ZNF337	10 (8%)	116	0.412 (1.00)	0.742 (1.00)	0.217 (1.00)	0.493 (1.00)	0.528 (1.00)	0.041 (1.00)	0.762 (1.00)	0.418 (1.00)	0.544 (1.00)	0.598 (1.00)
C16ORF46	4 (3%)	122	0.123 (1.00)	0.187 (1.00)			0.208 (1.00)	0.209 (1.00)	0.293 (1.00)	0.179 (1.00)	0.152 (1.00)	0.528 (1.00)
TAOK2	8 (6%)	118	0.874 (1.00)	0.376 (1.00)	0.187 (1.00)	0.366 (1.00)	0.259 (1.00)	0.155 (1.00)	0.737 (1.00)	0.774 (1.00)	0.952 (1.00)	0.897 (1.00)
DHX9	7 (6%)	119	0.0816 (1.00)	0.141 (1.00)	0.13 (1.00)	0.494 (1.00)	0.0776 (1.00)	0.673 (1.00)	0.796 (1.00)	0.868 (1.00)	0.866 (1.00)	0.574 (1.00)
ZNF608	8 (6%)	118	0.267 (1.00)	0.337 (1.00)	0.204 (1.00)	0.665 (1.00)	0.603 (1.00)	0.265 (1.00)	0.748 (1.00)	0.226 (1.00)	0.299 (1.00)	0.627 (1.00)
SLITRK5	15 (12%)	111	0.29 (1.00)	0.338 (1.00)	0.386 (1.00)	0.75 (1.00)	0.746 (1.00)	0.93 (1.00)	0.432 (1.00)	0.364 (1.00)	0.362 (1.00)	0.52 (1.00)
KIAA0802	5 (4%)	121	0.213 (1.00)	0.343 (1.00)			0.229 (1.00)	0.572 (1.00)	0.5 (1.00)	1 (1.00)	0.482 (1.00)	0.89 (1.00)
CTRL	5 (4%)	121	0.36 (1.00)	0.0986 (1.00)			0.745 (1.00)	0.849 (1.00)	0.571 (1.00)	0.282 (1.00)	0.081 (1.00)	0.878 (1.00)
DHX36	10 (8%)	116	0.573 (1.00)	0.915 (1.00)	0.174 (1.00)	0.86 (1.00)	0.529 (1.00)	0.495 (1.00)	0.562 (1.00)	0.807 (1.00)	0.0868 (1.00)	0.82 (1.00)
GTF3C3	5 (4%)	121	0.193 (1.00)	0.391 (1.00)	0.296 (1.00)	0.187 (1.00)	0.621 (1.00)	0.181 (1.00)	0.573 (1.00)	0.208 (1.00)	0.508 (1.00)	0.0167 (1.00)
OTX1	7 (6%)	119	0.247 (1.00)	0.422 (1.00)	0.307 (1.00)	0.434 (1.00)	0.689 (1.00)	1 (1.00)	0.587 (1.00)	1 (1.00)	0.261 (1.00)	0.982 (1.00)
MTMR15	8 (6%)	118	0.392 (1.00)	0.477 (1.00)	0.406 (1.00)	0.806 (1.00)	0.45 (1.00)	0.13 (1.00)	0.216 (1.00)	0.511 (1.00)	0.808 (1.00)	0.664 (1.00)
IYD	6 (5%)	120	0.936 (1.00)	0.897 (1.00)	0.443 (1.00)	1 (1.00)	0.906 (1.00)	0.701 (1.00)	0.8 (1.00)	0.822 (1.00)	0.488 (1.00)	0.88 (1.00)
GTF2F1	5 (4%)	121	0.214 (1.00)	0.345 (1.00)	0.374 (1.00)	0.939 (1.00)	0.857 (1.00)	0.461 (1.00)	0.316 (1.00)	1 (1.00)	0.479 (1.00)	0.889 (1.00)
DIDO1	14 (11%)	112	0.00362 (1.00)	0.319 (1.00)	0.929 (1.00)	0.401 (1.00)	0.726 (1.00)	0.503 (1.00)	0.926 (1.00)	0.852 (1.00)	0.673 (1.00)	0.635 (1.00)
GNL3L	5 (4%)	121	0.159 (1.00)	0.0544 (1.00)	0.536 (1.00)	0.456 (1.00)	0.387 (1.00)	0.57 (1.00)	0.488 (1.00)	1 (1.00)	0.808 (1.00)	0.19 (1.00)
ZC3H7B	7 (6%)	119	0.27 (1.00)	0.0791 (1.00)	0.821 (1.00)	0.909 (1.00)	0.315 (1.00)	0.868 (1.00)	0.354 (1.00)	0.354 (1.00)	0.0249 (1.00)	0.191 (1.00)
COL4A4	9 (7%)	117	0.224 (1.00)	0.967 (1.00)	0.107 (1.00)	0.744 (1.00)	0.66 (1.00)	0.576 (1.00)	0.575 (1.00)	0.436 (1.00)	0.0412 (1.00)	0.198 (1.00)
SYCP2	8 (6%)	118	0.376 (1.00)	0.861 (1.00)	0.259 (1.00)	0.337 (1.00)	0.782 (1.00)	0.779 (1.00)	0.978 (1.00)	0.309 (1.00)	0.494 (1.00)	0.433 (1.00)
CNKSR2	11 (9%)	115	0.734 (1.00)	0.902 (1.00)	0.587 (1.00)	0.689 (1.00)	0.791 (1.00)	0.295 (1.00)	0.888 (1.00)	0.907 (1.00)	0.735 (1.00)	0.687 (1.00)
OR5A1	5 (4%)	121	0.793 (1.00)	0.76 (1.00)	0.404 (1.00)	0.822 (1.00)	0.0948 (1.00)	0.703 (1.00)	0.438 (1.00)	0.823 (1.00)	0.385 (1.00)	0.777 (1.00)
OSBPL3	8 (6%)	118	0.875 (1.00)	0.0635 (1.00)	0.243 (1.00)	0.624 (1.00)	0.0434 (1.00)	0.491 (1.00)	0.709 (1.00)	0.4 (1.00)	0.3 (1.00)	0.323 (1.00)
HSP90AB1	5 (4%)	121	0.212 (1.00)	0.241 (1.00)			0.711 (1.00)	0.182 (1.00)	0.349 (1.00)	0.458 (1.00)	0.806 (1.00)	1 (1.00)
PLAUR	4 (3%)	122	0.314 (1.00)	1 (1.00)			0.726 (1.00)	0.198 (1.00)	0.0258 (1.00)	0.358 (1.00)	0.461 (1.00)	0.695 (1.00)
GPC2	5 (4%)	121	0.648 (1.00)	0.13 (1.00)	0.762 (1.00)	0.401 (1.00)	0.907 (1.00)	1 (1.00)	0.155 (1.00)	0.46 (1.00)	0.406 (1.00)	0.464 (1.00)
ACBD3	4 (3%)	122	0.499 (1.00)	1 (1.00)	0.241 (1.00)	0.753 (1.00)	0.575 (1.00)	1 (1.00)	0.893 (1.00)	1 (1.00)	0.481 (1.00)	0.728 (1.00)
PURB	4 (3%)	122	0.824 (1.00)	0.843 (1.00)			0.771 (1.00)	1 (1.00)	0.561 (1.00)	1 (1.00)	0.599 (1.00)	0.87 (1.00)
ABCC2	6 (5%)	120	0.325 (1.00)	0.0536 (1.00)	0.954 (1.00)	1 (1.00)	0.408 (1.00)	1 (1.00)	0.959 (1.00)	0.679 (1.00)	0.168 (1.00)	0.9 (1.00)
KRT73	5 (4%)	121	0.0261 (1.00)	0.867 (1.00)	0.955 (1.00)	0.644 (1.00)	0.0452 (1.00)	0.461 (1.00)	0.22 (1.00)	0.457 (1.00)	0.263 (1.00)	0.745 (1.00)
SGOL2	7 (6%)	119	0.653 (1.00)	0.356 (1.00)			0.83 (1.00)	0.766 (1.00)	0.323 (1.00)	0.869 (1.00)	0.842 (1.00)	0.763 (1.00)
MAGEC1	21 (17%)	105	0.469 (1.00)	0.744 (1.00)	0.944 (1.00)	0.915 (1.00)	0.562 (1.00)	0.895 (1.00)	0.691 (1.00)	0.561 (1.00)	0.598 (1.00)	0.616 (1.00)
ZNF609	4 (3%)	122	0.617 (1.00)	0.3 (1.00)			0.396 (1.00)	0.0317 (1.00)	0.235 (1.00)	0.808 (1.00)	0.00609 (1.00)	0.0323 (1.00)
ATP4A	10 (8%)	116	0.24 (1.00)	0.211 (1.00)	0.669 (1.00)	1 (1.00)	0.569 (1.00)	0.904 (1.00)	0.686 (1.00)	0.81 (1.00)	0.423 (1.00)	0.752 (1.00)
TRPV2	7 (6%)	119	0.748 (1.00)	0.255 (1.00)	0.955 (1.00)	0.849 (1.00)	0.668 (1.00)	0.105 (1.00)	0.372 (1.00)	0.138 (1.00)	0.321 (1.00)	0.86 (1.00)
N4BP2	6 (5%)	120	0.237 (1.00)	1 (1.00)	0.351 (1.00)	0.309 (1.00)	0.239 (1.00)	0.864 (1.00)	0.0137 (1.00)	1 (1.00)	0.14 (1.00)	0.155 (1.00)
HMMR	6 (5%)	120	1 (1.00)	0.0262 (1.00)	0.69 (1.00)	0.529 (1.00)	0.882 (1.00)	0.622 (1.00)	0.358 (1.00)	0.144 (1.00)	0.604 (1.00)	0.341 (1.00)
CSNK1G3	5 (4%)	121	1 (1.00)	0.304 (1.00)	0.62 (1.00)	0.562 (1.00)	1 (1.00)	0.512 (1.00)	1 (1.00)	0.804 (1.00)	0.323 (1.00)	0.562 (1.00)
ATP13A3	5 (4%)	121	0.212 (1.00)	0.394 (1.00)	0.829 (1.00)	0.752 (1.00)	0.577 (1.00)	0.573 (1.00)	0.467 (1.00)	1 (1.00)	0.116 (1.00)	0.598 (1.00)
ZNF626	10 (8%)	116	1 (1.00)	0.0577 (1.00)	0.289 (1.00)	0.525 (1.00)	0.155 (1.00)	0.907 (1.00)	0.313 (1.00)	0.0831 (1.00)	0.471 (1.00)	0.0914 (1.00)
LIMD1	8 (6%)	118	1 (1.00)	0.0367 (1.00)	0.468 (1.00)	0.822 (1.00)	0.308 (1.00)	0.629 (1.00)	0.689 (1.00)	0.0859 (1.00)	0.463 (1.00)	0.273 (1.00)
ESCO2	4 (3%)	122	0.146 (1.00)	0.0223 (1.00)	0.328 (1.00)	0.163 (1.00)	0.0402 (1.00)	0.265 (1.00)	0.0392 (1.00)	0.627 (1.00)	0.0182 (1.00)	0.0519 (1.00)
MRPS5	4 (3%)	122	0.822 (1.00)	0.674 (1.00)	0.591 (1.00)	1 (1.00)	0.667 (1.00)	0.805 (1.00)	0.291 (1.00)	0.629 (1.00)	0.151 (1.00)	0.892 (1.00)
TFIP11	6 (5%)	120	0.406 (1.00)	0.363 (1.00)	0.0102 (1.00)	0.419 (1.00)	0.856 (1.00)	0.293 (1.00)	0.7 (1.00)	0.567 (1.00)	0.0821 (1.00)	0.437 (1.00)
PVRL1	8 (6%)	118	0.693 (1.00)	0.541 (1.00)	0.239 (1.00)	0.909 (1.00)	0.619 (1.00)	1 (1.00)	0.79 (1.00)	1 (1.00)	0.049 (1.00)	0.516 (1.00)
DIAPH3	7 (6%)	119	0.0372 (1.00)	0.142 (1.00)	0.107 (1.00)	0.661 (1.00)	0.706 (1.00)	0.87 (1.00)	0.929 (1.00)	0.484 (1.00)	0.252 (1.00)	0.943 (1.00)
IRS4	8 (6%)	118	0.319 (1.00)	0.771 (1.00)	0.188 (1.00)	0.617 (1.00)	0.738 (1.00)	1 (1.00)	0.519 (1.00)	1 (1.00)	0.0916 (1.00)	0.983 (1.00)
USP4	7 (6%)	119	1 (1.00)	0.911 (1.00)	0.403 (1.00)	0.823 (1.00)	0.444 (1.00)	1 (1.00)	0.372 (1.00)	1 (1.00)	0.48 (1.00)	0.563 (1.00)
TGFBR2	8 (6%)	118	0.194 (1.00)	0.0799 (1.00)	0.369 (1.00)	0.499 (1.00)	0.755 (1.00)	1 (1.00)	0.842 (1.00)	0.226 (1.00)	0.951 (1.00)	0.522 (1.00)
ZMYND8	8 (6%)	118	0.52 (1.00)	0.158 (1.00)	0.955 (1.00)	0.75 (1.00)	0.346 (1.00)	0.488 (1.00)	0.679 (1.00)	0.512 (1.00)	0.0992 (1.00)	0.415 (1.00)
ATG2B	9 (7%)	117	0.487 (1.00)	0.158 (1.00)	0.0636 (1.00)	0.341 (1.00)	0.268 (1.00)	0.188 (1.00)	0.6 (1.00)	0.299 (1.00)	0.575 (1.00)	0.206 (1.00)
CDH10	13 (10%)	113	0.344 (1.00)	0.444 (1.00)	0.82 (1.00)	0.782 (1.00)	0.973 (1.00)	0.65 (1.00)	0.724 (1.00)	0.178 (1.00)	0.979 (1.00)	0.847 (1.00)
OXR1	5 (4%)	121	0.922 (1.00)	0.258 (1.00)	0.917 (1.00)	0.754 (1.00)	0.811 (1.00)	1 (1.00)	0.61 (1.00)	0.678 (1.00)	0.892 (1.00)	0.249 (1.00)
SEC31A	6 (5%)	120	1 (1.00)	0.196 (1.00)	0.605 (1.00)	0.748 (1.00)	0.433 (1.00)	0.165 (1.00)	0.546 (1.00)	0.143 (1.00)	0.637 (1.00)	0.827 (1.00)
NDEL1	5 (4%)	121	0.604 (1.00)	0.142 (1.00)			0.0835 (1.00)	0.235 (1.00)	0.194 (1.00)	0.0506 (1.00)	0.115 (1.00)	0.00879 (1.00)
SHROOM4	10 (8%)	116	0.465 (1.00)	0.724 (1.00)	0.904 (1.00)	0.652 (1.00)	0.87 (1.00)	0.407 (1.00)	0.924 (1.00)	0.467 (1.00)	0.495 (1.00)	0.788 (1.00)
HIRA	5 (4%)	121	0.0971 (1.00)	0.523 (1.00)	1 (1.00)	0.493 (1.00)	0.766 (1.00)	0.236 (1.00)	0.749 (1.00)	0.208 (1.00)	0.706 (1.00)	0.356 (1.00)
XRCC2	4 (3%)	122	0.193 (1.00)	0.84 (1.00)			0.284 (1.00)	1 (1.00)	0.182 (1.00)	0.352 (1.00)	0.431 (1.00)	0.962 (1.00)
APEX1	4 (3%)	122	0.901 (1.00)	0.843 (1.00)			0.666 (1.00)	0.514 (1.00)	0.687 (1.00)	1 (1.00)	0.754 (1.00)	0.495 (1.00)
TMEM90B	6 (5%)	120	0.455 (1.00)	0.767 (1.00)	0.955 (1.00)	0.748 (1.00)	1 (1.00)	0.452 (1.00)	0.617 (1.00)	0.428 (1.00)	0.333 (1.00)	0.597 (1.00)
RAB11FIP1	7 (6%)	119	0.136 (1.00)	0.841 (1.00)	0.3 (1.00)	1 (1.00)	0.621 (1.00)	0.765 (1.00)	0.844 (1.00)	0.486 (1.00)	0.282 (1.00)	0.842 (1.00)
MPP6	5 (4%)	121	0.078 (1.00)	1 (1.00)	0.0413 (1.00)	0.401 (1.00)	0.0517 (1.00)	0.0576 (1.00)	0.892 (1.00)	0.354 (1.00)	0.129 (1.00)	0.365 (1.00)
KIAA2018	8 (6%)	118	1 (1.00)	0.888 (1.00)	0.524 (1.00)	0.883 (1.00)	0.451 (1.00)	0.883 (1.00)	0.854 (1.00)	1 (1.00)	0.705 (1.00)	0.965 (1.00)
CEP72	6 (5%)	120	0.784 (1.00)	0.509 (1.00)	0.606 (1.00)	0.749 (1.00)	0.363 (1.00)	0.525 (1.00)	0.698 (1.00)	0.718 (1.00)	0.57 (1.00)	0.88 (1.00)
AJAP1	8 (6%)	118	0.329 (1.00)	0.773 (1.00)	0.173 (1.00)	0.361 (1.00)	0.802 (1.00)	0.627 (1.00)	0.508 (1.00)	0.876 (1.00)	0.48 (1.00)	0.697 (1.00)
GABBR1	10 (8%)	116	0.157 (1.00)	0.969 (1.00)	1 (1.00)	0.972 (1.00)	0.825 (1.00)	0.822 (1.00)	0.674 (1.00)	0.9 (1.00)	0.583 (1.00)	0.191 (1.00)
PAMR1	7 (6%)	119	0.597 (1.00)	0.204 (1.00)	0.702 (1.00)	0.396 (1.00)	0.348 (1.00)	0.87 (1.00)	0.589 (1.00)	0.356 (1.00)	0.839 (1.00)	0.714 (1.00)
GRHPR	5 (4%)	121	0.0345 (1.00)	0.0544 (1.00)	0.919 (1.00)	0.755 (1.00)	0.247 (1.00)	0.263 (1.00)	0.766 (1.00)	0.628 (1.00)	0.51 (1.00)	0.436 (1.00)
CYP20A1	6 (5%)	120	0.306 (1.00)	0.727 (1.00)	0.242 (1.00)	0.755 (1.00)	0.409 (1.00)	0.255 (1.00)	0.0875 (1.00)	0.349 (1.00)	0.636 (1.00)	0.263 (1.00)
ARMCX3	5 (4%)	121	0.481 (1.00)	0.549 (1.00)	0.667 (1.00)	0.421 (1.00)	0.306 (1.00)	0.236 (1.00)	0.16 (1.00)	0.358 (1.00)	0.853 (1.00)	0.489 (1.00)
MED23	6 (5%)	120	0.325 (1.00)	0.944 (1.00)	0.802 (1.00)	0.938 (1.00)	0.538 (1.00)	0.862 (1.00)	0.536 (1.00)	0.842 (1.00)	0.399 (1.00)	0.856 (1.00)
AR	8 (6%)	118	0.0684 (1.00)	0.86 (1.00)	0.59 (1.00)	1 (1.00)	0.205 (1.00)	0.0916 (1.00)	0.979 (1.00)	0.00278 (1.00)	0.368 (1.00)	0.203 (1.00)
NKTR	6 (5%)	120	0.596 (1.00)	0.0878 (1.00)	0.667 (1.00)	0.64 (1.00)	0.0564 (1.00)	0.307 (1.00)	0.336 (1.00)	0.842 (1.00)	0.141 (1.00)	0.238 (1.00)
VDAC1	5 (4%)	121	0.851 (1.00)	0.931 (1.00)			0.787 (1.00)	1 (1.00)	0.131 (1.00)	1 (1.00)	0.14 (1.00)	0.543 (1.00)
RIT1	4 (3%)	122	0.898 (1.00)	0.841 (1.00)	1 (1.00)	0.742 (1.00)	0.532 (1.00)	0.515 (1.00)	0.481 (1.00)	0.806 (1.00)	0.398 (1.00)	0.758 (1.00)
FAM47C	21 (17%)	105	1 (1.00)	0.683 (1.00)	0.65 (1.00)	0.639 (1.00)	0.223 (1.00)	0.574 (1.00)	0.311 (1.00)	0.39 (1.00)	0.227 (1.00)	0.264 (1.00)
SEC62	5 (4%)	121	0.0629 (1.00)	0.578 (1.00)	0.408 (1.00)	0.315 (1.00)	0.712 (1.00)	1 (1.00)	0.749 (1.00)	0.679 (1.00)	0.707 (1.00)	0.836 (1.00)
CDC27	6 (5%)	120	0.595 (1.00)	0.183 (1.00)	0.0461 (1.00)	0.663 (1.00)	0.177 (1.00)	0.525 (1.00)	0.605 (1.00)	0.233 (1.00)	0.679 (1.00)	0.911 (1.00)
PLXNA3	7 (6%)	119	0.0055 (1.00)	0.683 (1.00)	0.0273 (1.00)	0.386 (1.00)	0.538 (1.00)	0.126 (1.00)	0.00996 (1.00)	0.0565 (1.00)	0.0462 (1.00)	0.0623 (1.00)
ACCN2	6 (5%)	120	0.88 (1.00)	0.15 (1.00)	0.0279 (1.00)	0.418 (1.00)	0.231 (1.00)	0.847 (1.00)	0.724 (1.00)	0.824 (1.00)	0.456 (1.00)	0.879 (1.00)
RGS22	5 (4%)	121	1 (1.00)	0.931 (1.00)			1 (1.00)	0.846 (1.00)	0.749 (1.00)	1 (1.00)	0.147 (1.00)	0.798 (1.00)
FRG1	7 (6%)	119	0.545 (1.00)	0.405 (1.00)	0.292 (1.00)	0.626 (1.00)	0.12 (1.00)	0.871 (1.00)	0.641 (1.00)	0.487 (1.00)	0.915 (1.00)	0.583 (1.00)
CCDC88A	6 (5%)	120	0.534 (1.00)	0.468 (1.00)	0.647 (1.00)	0.554 (1.00)	0.549 (1.00)	0.739 (1.00)	0.393 (1.00)	0.144 (1.00)	0.638 (1.00)	0.253 (1.00)
CR1L	5 (4%)	121	0.0956 (1.00)	0.683 (1.00)			0.231 (1.00)	1 (1.00)	0.308 (1.00)	0.68 (1.00)	0.324 (1.00)	1 (1.00)
HDLBP	8 (6%)	118	0.0276 (1.00)	0.354 (1.00)	0.801 (1.00)	0.94 (1.00)	0.689 (1.00)	0.625 (1.00)	0.0954 (1.00)	0.447 (1.00)	0.806 (1.00)	0.667 (1.00)
KBTBD4	4 (3%)	122	0.166 (1.00)	0.0144 (1.00)			0.716 (1.00)	0.655 (1.00)	0.623 (1.00)	0.48 (1.00)	0.591 (1.00)	0.467 (1.00)
SBSN	5 (4%)	121	0.603 (1.00)	0.414 (1.00)			0.0989 (1.00)	0.699 (1.00)	0.251 (1.00)	0.822 (1.00)	0.0289 (1.00)	0.293 (1.00)
KCTD3	4 (3%)	122	0.398 (1.00)	0.0145 (1.00)	0.556 (1.00)	0.66 (1.00)	0.744 (1.00)	0.376 (1.00)	0.34 (1.00)	0.475 (1.00)	0.184 (1.00)	0.963 (1.00)
GUCY2F	7 (6%)	119	0.213 (1.00)	0.707 (1.00)	0.906 (1.00)	0.805 (1.00)	0.938 (1.00)	0.507 (1.00)	0.563 (1.00)	1 (1.00)	0.703 (1.00)	0.521 (1.00)
PHIP	7 (6%)	119	0.896 (1.00)	0.276 (1.00)	0.667 (1.00)	0.851 (1.00)	0.8 (1.00)	0.371 (1.00)	0.679 (1.00)	1 (1.00)	0.705 (1.00)	0.748 (1.00)
FOXJ2	5 (4%)	121	0.694 (1.00)	0.524 (1.00)	0.106 (1.00)	0.74 (1.00)	0.856 (1.00)	0.847 (1.00)	0.96 (1.00)	0.824 (1.00)	0.114 (1.00)	0.796 (1.00)
KIF3C	4 (3%)	122	0.358 (1.00)	1 (1.00)	0.404 (1.00)	0.824 (1.00)	0.826 (1.00)	0.76 (1.00)	1 (1.00)	1 (1.00)	0.752 (1.00)	0.933 (1.00)
ZC3H13	9 (7%)	117	0.473 (1.00)	0.777 (1.00)	0.615 (1.00)	0.409 (1.00)	0.685 (1.00)	0.802 (1.00)	0.759 (1.00)	0.891 (1.00)	0.135 (1.00)	0.784 (1.00)
NAGPA	5 (4%)	121	0.158 (1.00)	1 (1.00)	0.487 (1.00)	0.625 (1.00)	0.493 (1.00)	0.702 (1.00)	1 (1.00)	0.566 (1.00)	0.806 (1.00)	0.921 (1.00)
CLIP1	6 (5%)	120	0.631 (1.00)	0.511 (1.00)	0.593 (1.00)	1 (1.00)	0.811 (1.00)	0.622 (1.00)	0.335 (1.00)	0.72 (1.00)	0.219 (1.00)	0.539 (1.00)
FNDC7	4 (3%)	122	1 (1.00)	1 (1.00)	0.763 (1.00)	1 (1.00)	0.665 (1.00)	0.653 (1.00)	0.848 (1.00)	1 (1.00)	0.594 (1.00)	0.728 (1.00)
MOGS	5 (4%)	121	0.417 (1.00)	0.369 (1.00)	0.105 (1.00)	0.333 (1.00)	0.337 (1.00)	0.846 (1.00)	0.571 (1.00)	0.283 (1.00)	0.325 (1.00)	0.879 (1.00)
BCL3	5 (4%)	121	0.561 (1.00)	0.683 (1.00)	0.0318 (1.00)	0.354 (1.00)	0.494 (1.00)	0.704 (1.00)	1 (1.00)	0.279 (1.00)	0.578 (1.00)	0.923 (1.00)
MED12L	13 (10%)	113	0.588 (1.00)	0.979 (1.00)	0.969 (1.00)	0.735 (1.00)	0.697 (1.00)	0.347 (1.00)	0.773 (1.00)	0.654 (1.00)	0.973 (1.00)	0.335 (1.00)
EXOC4	7 (6%)	119	0.214 (1.00)	0.358 (1.00)	0.203 (1.00)	0.141 (1.00)	0.958 (1.00)	1 (1.00)	0.975 (1.00)	1 (1.00)	0.68 (1.00)	1 (1.00)
MARCH7	4 (3%)	122	0.681 (1.00)	0.226 (1.00)	0.621 (1.00)	0.562 (1.00)	0.183 (1.00)	0.656 (1.00)	0.131 (1.00)	0.478 (1.00)	0.389 (1.00)	0.106 (1.00)
TMCC1	6 (5%)	120	0.129 (1.00)	0.727 (1.00)			0.177 (1.00)	0.526 (1.00)	0.202 (1.00)	0.617 (1.00)	0.421 (1.00)	0.797 (1.00)
NBPF10	9 (7%)	117	0.365 (1.00)	0.158 (1.00)	0.74 (1.00)	0.531 (1.00)	0.169 (1.00)	0.489 (1.00)	0.301 (1.00)	0.401 (1.00)	0.162 (1.00)	0.584 (1.00)
IFFO1	5 (4%)	121	0.739 (1.00)	0.467 (1.00)	0.802 (1.00)	0.939 (1.00)	0.233 (1.00)	0.462 (1.00)	0.124 (1.00)	0.68 (1.00)	0.806 (1.00)	0.482 (1.00)
ARHGEF7	6 (5%)	120	0.0362 (1.00)	0.848 (1.00)	0.556 (1.00)	0.494 (1.00)	0.115 (1.00)	1 (1.00)	0.714 (1.00)	1 (1.00)	0.635 (1.00)	0.621 (1.00)
ZNF878	8 (6%)	118	0.954 (1.00)	0.801 (1.00)	0.406 (1.00)	0.832 (1.00)	0.952 (1.00)	0.372 (1.00)	0.978 (1.00)	0.678 (1.00)	0.512 (1.00)	0.854 (1.00)
AFF4	4 (3%)	122	0.903 (1.00)	0.842 (1.00)	0.262 (1.00)	0.099 (1.00)	0.771 (1.00)	0.376 (1.00)	1 (1.00)	0.353 (1.00)	1 (1.00)	0.672 (1.00)
ZNF493	9 (7%)	117	0.831 (1.00)	0.876 (1.00)	0.0349 (1.00)	0.392 (1.00)	0.39 (1.00)	0.649 (1.00)	0.41 (1.00)	0.547 (1.00)	0.633 (1.00)	0.175 (1.00)
HMGB1	5 (4%)	121	0.212 (1.00)	0.211 (1.00)	0.423 (1.00)	0.937 (1.00)	0.091 (1.00)	0.00662 (1.00)	0.00909 (1.00)	0.104 (1.00)	0.2 (1.00)	0.282 (1.00)
NKAP	4 (3%)	122	0.499 (1.00)	0.781 (1.00)	0.592 (1.00)	1 (1.00)	0.665 (1.00)	0.805 (1.00)	0.804 (1.00)	0.179 (1.00)	0.634 (1.00)	0.889 (1.00)
ZFP36	4 (3%)	122	0.618 (1.00)	0.572 (1.00)	1 (1.00)	0.755 (1.00)	0.532 (1.00)	0.804 (1.00)	0.15 (1.00)	0.805 (1.00)	0.213 (1.00)	0.531 (1.00)
GIT1	5 (4%)	121	0.604 (1.00)	1 (1.00)	0.591 (1.00)	1 (1.00)	0.218 (1.00)	0.461 (1.00)	0.86 (1.00)	0.457 (1.00)	0.348 (1.00)	0.78 (1.00)
RUNX1T1	5 (4%)	121	0.259 (1.00)	0.223 (1.00)	0.374 (1.00)	0.938 (1.00)	0.414 (1.00)	0.847 (1.00)	0.724 (1.00)	0.281 (1.00)	0.479 (1.00)	0.962 (1.00)
RP1L1	14 (11%)	112	0.914 (1.00)	0.316 (1.00)	0.659 (1.00)	0.386 (1.00)	0.29 (1.00)	0.217 (1.00)	0.991 (1.00)	0.161 (1.00)	0.881 (1.00)	0.751 (1.00)
AP2A2	5 (4%)	121	0.215 (1.00)	0.934 (1.00)	0.69 (1.00)	0.527 (1.00)	1 (1.00)	0.24 (1.00)	0.535 (1.00)	1 (1.00)	0.806 (1.00)	0.472 (1.00)
EIF5B	5 (4%)	121	0.795 (1.00)	0.228 (1.00)	0.403 (1.00)	0.82 (1.00)	0.857 (1.00)	0.701 (1.00)	0.5 (1.00)	1 (1.00)	0.941 (1.00)	0.924 (1.00)
WHSC1L1	6 (5%)	120	0.384 (1.00)	0.076 (1.00)	1 (1.00)	1 (1.00)	0.811 (1.00)	0.865 (1.00)	0.845 (1.00)	0.844 (1.00)	0.332 (1.00)	0.683 (1.00)
BRCA2	7 (6%)	119	0.521 (1.00)	0.841 (1.00)	0.123 (1.00)	0.114 (1.00)	0.444 (1.00)	0.504 (1.00)	0.517 (1.00)	0.249 (1.00)	0.69 (1.00)	0.801 (1.00)
E2F8	4 (3%)	122	0.751 (1.00)	0.0146 (1.00)	0.8 (1.00)	0.937 (1.00)	0.347 (1.00)	0.375 (1.00)	0.234 (1.00)	0.63 (1.00)	0.835 (1.00)	0.89 (1.00)
SPRR4	4 (3%)	122	1 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.529 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.833 (1.00)	0.73 (1.00)
ZMIZ2	6 (5%)	120	1 (1.00)	0.227 (1.00)	0.275 (1.00)	0.713 (1.00)	0.658 (1.00)	0.703 (1.00)	0.279 (1.00)	0.825 (1.00)	0.585 (1.00)	0.948 (1.00)
OR5H1	7 (6%)	119	0.443 (1.00)	0.101 (1.00)	0.274 (1.00)	0.194 (1.00)	0.636 (1.00)	0.765 (1.00)	0.702 (1.00)	0.642 (1.00)	0.723 (1.00)	0.698 (1.00)
SMYD5	5 (4%)	121	0.796 (1.00)	0.223 (1.00)	0.802 (1.00)	0.938 (1.00)	0.657 (1.00)	0.37 (1.00)	0.227 (1.00)	0.279 (1.00)	0.578 (1.00)	0.781 (1.00)
NIPA2	3 (2%)	123	0.563 (1.00)	0.557 (1.00)	0.485 (1.00)	0.624 (1.00)	0.515 (1.00)	0.281 (1.00)	0.272 (1.00)	0.754 (1.00)	0.601 (1.00)	0.322 (1.00)
C7ORF16	4 (3%)	122	0.902 (1.00)	0.447 (1.00)			0.137 (1.00)	0.0598 (1.00)	0.0445 (1.00)	0.117 (1.00)	0.026 (1.00)	0.0657 (1.00)
DOCK6	5 (4%)	121	0.308 (1.00)	0.548 (1.00)	0.556 (1.00)	0.497 (1.00)	0.549 (1.00)	0.368 (1.00)	0.959 (1.00)	0.283 (1.00)	0.42 (1.00)	0.748 (1.00)
OR10A2	4 (3%)	122	0.503 (1.00)	0.782 (1.00)	1 (1.00)	0.753 (1.00)	0.101 (1.00)	0.121 (1.00)	0.209 (1.00)	0.476 (1.00)	0.655 (1.00)	0.00215 (1.00)
KDM2A	5 (4%)	121	0.738 (1.00)	0.761 (1.00)	0.954 (1.00)	0.85 (1.00)	0.122 (1.00)	0.293 (1.00)	0.424 (1.00)	0.824 (1.00)	0.292 (1.00)	0.717 (1.00)
RBM45	5 (4%)	121	0.259 (1.00)	0.762 (1.00)	0.556 (1.00)	0.495 (1.00)	0.636 (1.00)	0.0813 (1.00)	1 (1.00)	1 (1.00)	0.387 (1.00)	1 (1.00)
PHRF1	4 (3%)	122	0.0437 (1.00)	0.622 (1.00)			0.872 (1.00)	0.205 (1.00)	0.209 (1.00)	0.179 (1.00)	0.151 (1.00)	0.166 (1.00)
KCND3	5 (4%)	121	0.693 (1.00)	1 (1.00)	0.803 (1.00)	0.939 (1.00)	0.0954 (1.00)	0.702 (1.00)	0.699 (1.00)	0.565 (1.00)	0.287 (1.00)	0.636 (1.00)
CD1D	6 (5%)	120	0.88 (1.00)	0.508 (1.00)	0.47 (1.00)	0.409 (1.00)	0.919 (1.00)	1 (1.00)	0.616 (1.00)	0.428 (1.00)	0.962 (1.00)	0.854 (1.00)
PHF21A	4 (3%)	122	0.822 (1.00)	0.841 (1.00)	0.245 (1.00)	1 (1.00)	0.744 (1.00)	1 (1.00)	0.946 (1.00)	1 (1.00)	0.813 (1.00)	0.82 (1.00)
STEAP2	5 (4%)	121	0.738 (1.00)	0.469 (1.00)	0.446 (1.00)	0.663 (1.00)	0.403 (1.00)	1 (1.00)	0.721 (1.00)	0.676 (1.00)	0.609 (1.00)	0.385 (1.00)
SALL1	10 (8%)	116	0.0347 (1.00)	0.876 (1.00)	0.0366 (1.00)	0.222 (1.00)	0.798 (1.00)	0.576 (1.00)	0.233 (1.00)	0.341 (1.00)	0.0952 (1.00)	0.198 (1.00)
DSTN	3 (2%)	123	0.145 (1.00)	0.621 (1.00)	0.762 (1.00)	0.82 (1.00)	1 (1.00)	1 (1.00)	0.704 (1.00)	0.754 (1.00)	0.461 (1.00)	0.284 (1.00)
C6ORF154	4 (3%)	122	0.192 (1.00)	0.228 (1.00)			0.00766 (1.00)	0.655 (1.00)	0.805 (1.00)	0.629 (1.00)	0.418 (1.00)	0.674 (1.00)
TDRD6	8 (6%)	118	0.874 (1.00)	0.96 (1.00)	0.112 (1.00)	0.0578 (1.00)	0.858 (1.00)	0.108 (1.00)	0.896 (1.00)	0.679 (1.00)	0.941 (1.00)	0.897 (1.00)
SIGLEC11	5 (4%)	121	0.419 (1.00)	0.495 (1.00)	0.336 (1.00)	0.288 (1.00)	0.787 (1.00)	1 (1.00)	0.829 (1.00)	1 (1.00)	0.0704 (1.00)	0.686 (1.00)
UGP2	5 (4%)	121	0.362 (1.00)	0.416 (1.00)	0.487 (1.00)	0.625 (1.00)	0.398 (1.00)	0.803 (1.00)	0.804 (1.00)	0.628 (1.00)	0.0474 (1.00)	0.756 (1.00)
SCD	4 (3%)	122	0.0548 (1.00)	0.204 (1.00)			0.533 (1.00)	0.803 (1.00)	0.0131 (1.00)	1 (1.00)	0.364 (1.00)	0.124 (1.00)
PANK2	4 (3%)	122	0.616 (1.00)	0.841 (1.00)	0.691 (1.00)	0.742 (1.00)	0.747 (1.00)	0.377 (1.00)	0.623 (1.00)	1 (1.00)	0.322 (1.00)	0.727 (1.00)
GOLGA6B	6 (5%)	120	0.385 (1.00)	0.599 (1.00)	0.18 (1.00)	0.256 (1.00)	0.655 (1.00)	1 (1.00)	0.36 (1.00)	1 (1.00)	0.337 (1.00)	0.246 (1.00)
MKI67	9 (7%)	117	0.147 (1.00)	0.424 (1.00)	0.773 (1.00)	0.421 (1.00)	0.531 (1.00)	0.371 (1.00)	0.174 (1.00)	0.68 (1.00)	0.688 (1.00)	0.606 (1.00)
STK19	4 (3%)	122	0.618 (1.00)	0.574 (1.00)	0.132 (1.00)	0.278 (1.00)	0.666 (1.00)	0.51 (1.00)	0.726 (1.00)	0.803 (1.00)	0.962 (1.00)	0.89 (1.00)
SPANXN3	5 (4%)	121	0.237 (1.00)	0.469 (1.00)			0.908 (1.00)	0.701 (1.00)	0.229 (1.00)	0.822 (1.00)	0.558 (1.00)	0.293 (1.00)
RTEL1	6 (5%)	120	0.00536 (1.00)	0.1 (1.00)	0.373 (1.00)	0.94 (1.00)	0.609 (1.00)	0.45 (1.00)	0.869 (1.00)	0.427 (1.00)	0.447 (1.00)	0.774 (1.00)
NWD1	8 (6%)	118	0.667 (1.00)	0.829 (1.00)	0.72 (1.00)	0.163 (1.00)	0.952 (1.00)	1 (1.00)	0.771 (1.00)	1 (1.00)	0.348 (1.00)	0.777 (1.00)
NBPF1	5 (4%)	121	0.742 (1.00)	1 (1.00)	0.405 (1.00)	0.621 (1.00)	0.673 (1.00)	0.701 (1.00)	0.861 (1.00)	1 (1.00)	0.829 (1.00)	0.52 (1.00)
PPP1R10	4 (3%)	122	0.82 (1.00)	0.903 (1.00)			0.872 (1.00)	0.513 (1.00)	0.151 (1.00)	1 (1.00)	0.433 (1.00)	0.411 (1.00)
DDX50	5 (4%)	121	0.602 (1.00)	0.467 (1.00)	0.771 (1.00)	0.553 (1.00)	0.493 (1.00)	0.848 (1.00)	0.574 (1.00)	0.822 (1.00)	0.091 (1.00)	0.949 (1.00)
HOXA1	4 (3%)	122	0.357 (1.00)	0.727 (1.00)	0.486 (1.00)	0.623 (1.00)	0.574 (1.00)	0.512 (1.00)	0.0699 (1.00)	0.805 (1.00)	0.498 (1.00)	0.495 (1.00)
SLC4A3	6 (5%)	120	0.289 (1.00)	0.249 (1.00)	0.19 (1.00)	0.618 (1.00)	0.175 (1.00)	0.528 (1.00)	0.0675 (1.00)	0.842 (1.00)	0.306 (1.00)	0.287 (1.00)
XPA	3 (2%)	123	0.561 (1.00)	0.336 (1.00)
FADS2	4 (3%)	122	0.219 (1.00)	0.571 (1.00)	0.328 (1.00)	0.276 (1.00)	0.933 (1.00)	1 (1.00)	0.913 (1.00)	0.754 (1.00)	0.658 (1.00)	0.564 (1.00)
SYT2	4 (3%)	122	0.0895 (1.00)	0.372 (1.00)			0.804 (1.00)	0.806 (1.00)	0.624 (1.00)	0.627 (1.00)	0.908 (1.00)	0.888 (1.00)
RBM33	6 (5%)	120	1 (1.00)	1 (1.00)			0.315 (1.00)	0.623 (1.00)	0.941 (1.00)	0.718 (1.00)	0.344 (1.00)	0.732 (1.00)
ESD	5 (4%)	121	0.212 (1.00)	0.646 (1.00)	0.148 (1.00)	0.625 (1.00)	0.405 (1.00)	0.239 (1.00)	0.254 (1.00)	0.207 (1.00)	0.333 (1.00)	0.0841 (1.00)
RANBP2	14 (11%)	112	0.353 (1.00)	0.523 (1.00)	0.204 (1.00)	0.351 (1.00)	0.0278 (1.00)	0.691 (1.00)	0.0883 (1.00)	0.571 (1.00)	0.273 (1.00)	0.811 (1.00)
ABCB4	5 (4%)	121	0.16 (1.00)	0.129 (1.00)	0.195 (1.00)	0.207 (1.00)	0.244 (1.00)	0.262 (1.00)	0.534 (1.00)	0.627 (1.00)	0.0544 (1.00)	0.0518 (1.00)
FHL3	4 (3%)	122	0.619 (1.00)	0.779 (1.00)	0.025 (1.00)	0.758 (1.00)	0.573 (1.00)	1 (1.00)	0.894 (1.00)	1 (1.00)	0.483 (1.00)	0.73 (1.00)
NAP1L3	4 (3%)	122	0.901 (1.00)	0.572 (1.00)	0.132 (1.00)	0.278 (1.00)	0.743 (1.00)	1 (1.00)	0.846 (1.00)	0.354 (1.00)	0.651 (1.00)	0.82 (1.00)
GNAS	9 (7%)	117	0.311 (1.00)	0.295 (1.00)	0.652 (1.00)	0.65 (1.00)	0.475 (1.00)	1 (1.00)	0.242 (1.00)	0.259 (1.00)	0.58 (1.00)	0.389 (1.00)
PARP14	5 (4%)	121	0.853 (1.00)	0.932 (1.00)	0.694 (1.00)	1 (1.00)	0.496 (1.00)	0.461 (1.00)	0.498 (1.00)	1 (1.00)	0.611 (1.00)	0.435 (1.00)
SLCO1B3	7 (6%)	119	0.159 (1.00)	0.0647 (1.00)	0.67 (1.00)	0.715 (1.00)	0.098 (1.00)	0.0295 (1.00)	0.14 (1.00)	0.559 (1.00)	0.117 (1.00)	0.131 (1.00)
BCL9L	7 (6%)	119	0.203 (1.00)	0.71 (1.00)	0.405 (1.00)	0.625 (1.00)	0.859 (1.00)	0.871 (1.00)	0.395 (1.00)	0.353 (1.00)	0.0344 (1.00)	0.978 (1.00)
ZNF428	3 (2%)	123	0.263 (1.00)	0.245 (1.00)
ARFGAP3	4 (3%)	122	0.615 (1.00)	0.303 (1.00)			0.0795 (1.00)	0.512 (1.00)	0.00749 (1.00)	0.0259 (1.00)	0.349 (1.00)	0.252 (1.00)
SALL2	5 (4%)	121	0.922 (1.00)	0.644 (1.00)	1 (1.00)	0.755 (1.00)	0.307 (1.00)	0.57 (1.00)	0.502 (1.00)	0.567 (1.00)	0.91 (1.00)	0.461 (1.00)
BMP2K	5 (4%)	121	0.558 (1.00)	0.417 (1.00)	0.0257 (1.00)	0.939 (1.00)	0.639 (1.00)	0.846 (1.00)	0.703 (1.00)	0.28 (1.00)	0.113 (1.00)	0.797 (1.00)
RAI2	4 (3%)	122	0.0903 (1.00)	0.448 (1.00)	0.622 (1.00)	0.785 (1.00)	0.574 (1.00)	1 (1.00)	0.437 (1.00)	0.352 (1.00)	0.201 (1.00)	0.73 (1.00)
COL27A1	4 (3%)	122	0.0364 (1.00)	0.0147 (1.00)			0.533 (1.00)	1 (1.00)	0.624 (1.00)	0.477 (1.00)	0.0895 (1.00)	0.478 (1.00)
CCPG1	5 (4%)	121	0.851 (1.00)	0.72 (1.00)	0.725 (1.00)	0.937 (1.00)	0.456 (1.00)	0.846 (1.00)	0.152 (1.00)	0.568 (1.00)	0.556 (1.00)	0.715 (1.00)
TERF1	3 (2%)	123	0.656 (1.00)	0.886 (1.00)	0.404 (1.00)	0.399 (1.00)	0.826 (1.00)	1 (1.00)	0.912 (1.00)	1 (1.00)	0.423 (1.00)	0.747 (1.00)
HIST1H1B	5 (4%)	121	0.923 (1.00)	0.933 (1.00)			0.856 (1.00)	0.703 (1.00)	1 (1.00)	0.824 (1.00)	0.61 (1.00)	0.673 (1.00)
ZMYM4	4 (3%)	122	1 (1.00)	1 (1.00)	0.49 (1.00)	0.625 (1.00)	0.345 (1.00)	0.207 (1.00)	0.0142 (1.00)	0.18 (1.00)	0.636 (1.00)	0.163 (1.00)
TSPYL6	4 (3%)	122	1 (1.00)	0.673 (1.00)			0.533 (1.00)	0.807 (1.00)	0.501 (1.00)	0.628 (1.00)	0.487 (1.00)	0.629 (1.00)
SULT1C3	4 (3%)	122	0.682 (1.00)	0.671 (1.00)	0.193 (1.00)	0.207 (1.00)	0.621 (1.00)	0.655 (1.00)	0.621 (1.00)	0.477 (1.00)	0.908 (1.00)	0.729 (1.00)
SH3PXD2A	7 (6%)	119	0.68 (1.00)	0.954 (1.00)	0.333 (1.00)	0.193 (1.00)	0.789 (1.00)	0.675 (1.00)	0.754 (1.00)	0.87 (1.00)	0.991 (1.00)	0.715 (1.00)
ZSWIM4	5 (4%)	121	0.793 (1.00)	0.679 (1.00)	0.557 (1.00)	0.662 (1.00)	1 (1.00)	1 (1.00)	0.804 (1.00)	0.476 (1.00)	0.0474 (1.00)	0.0613 (1.00)
CCR3	4 (3%)	122	0.0292 (1.00)	0.0321 (1.00)			0.0281 (1.00)	0.653 (1.00)	0.139 (1.00)	0.479 (1.00)	0.569 (1.00)	0.139 (1.00)
CPLX3	4 (3%)	122	0.557 (1.00)	0.84 (1.00)			1 (1.00)	1 (1.00)	0.359 (1.00)	0.356 (1.00)	0.792 (1.00)	0.73 (1.00)
RAD17	5 (4%)	121	0.36 (1.00)	0.55 (1.00)	0.384 (1.00)	0.133 (1.00)	0.438 (1.00)	0.371 (1.00)	0.574 (1.00)	0.28 (1.00)	0.475 (1.00)	0.225 (1.00)
RANBP9	5 (4%)	121	0.392 (1.00)	1 (1.00)	0.763 (1.00)	0.623 (1.00)	0.908 (1.00)	0.0838 (1.00)	0.505 (1.00)	0.178 (1.00)	0.414 (1.00)	0.205 (1.00)
RASAL2	5 (4%)	121	0.6 (1.00)	0.226 (1.00)			0.642 (1.00)	0.846 (1.00)	0.102 (1.00)	0.823 (1.00)	0.651 (1.00)	0.82 (1.00)
CD86	4 (3%)	122	0.899 (1.00)	0.228 (1.00)	0.489 (1.00)	0.624 (1.00)	0.805 (1.00)	1 (1.00)	0.342 (1.00)	0.477 (1.00)	0.461 (1.00)	0.962 (1.00)
OR1N2	6 (5%)	120	0.0402 (1.00)	0.471 (1.00)	0.556 (1.00)	0.309 (1.00)	0.232 (1.00)	1 (1.00)	0.204 (1.00)	1 (1.00)	0.616 (1.00)	0.926 (1.00)
KIAA0408	6 (5%)	120	0.878 (1.00)	0.196 (1.00)	1 (1.00)	1 (1.00)	0.609 (1.00)	1 (1.00)	0.868 (1.00)	0.427 (1.00)	0.607 (1.00)	0.471 (1.00)
GPRIN2	4 (3%)	122	0.751 (1.00)	0.905 (1.00)	0.486 (1.00)	0.623 (1.00)	1 (1.00)	0.379 (1.00)	0.504 (1.00)	0.627 (1.00)	0.498 (1.00)	0.324 (1.00)
HSP90AA1	4 (3%)	122	0.403 (1.00)	0.727 (1.00)	0.0855 (1.00)	0.624 (1.00)	0.0198 (1.00)	0.21 (1.00)	0.0721 (1.00)	0.179 (1.00)	0.0854 (1.00)	0.056 (1.00)
SHPRH	5 (4%)	121	0.693 (1.00)	0.417 (1.00)	0.244 (1.00)	0.898 (1.00)	0.959 (1.00)	0.702 (1.00)	0.723 (1.00)	0.28 (1.00)	0.327 (1.00)	0.728 (1.00)
CCKAR	4 (3%)	122	0.4 (1.00)	0.527 (1.00)			0.55 (1.00)	0.0301 (1.00)	0.0453 (1.00)	0.119 (1.00)	0.0476 (1.00)	0.19 (1.00)
CHRNA9	4 (3%)	122	0.277 (1.00)	0.252 (1.00)	0.552 (1.00)	0.661 (1.00)	1 (1.00)	0.376 (1.00)	0.655 (1.00)	0.627 (1.00)	0.909 (1.00)	0.889 (1.00)
SH2D2A	5 (4%)	121	0.795 (1.00)	0.367 (1.00)	0.15 (1.00)	0.128 (1.00)	0.339 (1.00)	0.847 (1.00)	0.724 (1.00)	0.278 (1.00)	0.213 (1.00)	0.877 (1.00)
SLC9A11	5 (4%)	121	0.852 (1.00)	0.0687 (1.00)	0.114 (1.00)	0.364 (1.00)	0.219 (1.00)	0.291 (1.00)	0.309 (1.00)	1 (1.00)	0.94 (1.00)	0.745 (1.00)
P2RY1	6 (5%)	120	0.287 (1.00)	0.131 (1.00)	0.715 (1.00)	0.227 (1.00)	0.448 (1.00)	0.738 (1.00)	0.55 (1.00)	0.144 (1.00)	0.609 (1.00)	0.187 (1.00)
SCYL3	4 (3%)	122	0.00952 (1.00)	0.372 (1.00)	0.589 (1.00)	1 (1.00)	0.771 (1.00)	0.655 (1.00)	0.235 (1.00)	0.477 (1.00)	0.652 (1.00)	0.964 (1.00)
INTS5	3 (2%)	123	0.65 (1.00)	1 (1.00)			0.409 (1.00)	0.757 (1.00)	0.597 (1.00)	1 (1.00)	0.0909 (1.00)	0.87 (1.00)
DAAM1	6 (5%)	120	0.631 (1.00)	0.764 (1.00)	0.552 (1.00)	0.937 (1.00)	0.812 (1.00)	0.623 (1.00)	0.484 (1.00)	0.72 (1.00)	0.127 (1.00)	0.786 (1.00)
RERE	6 (5%)	120	0.388 (1.00)	1 (1.00)	0.1 (1.00)	1 (1.00)	0.243 (1.00)	0.74 (1.00)	0.94 (1.00)	0.62 (1.00)	0.176 (1.00)	0.731 (1.00)
CUX2	5 (4%)	121	0.562 (1.00)	0.68 (1.00)	0.151 (1.00)	0.411 (1.00)	0.96 (1.00)	0.701 (1.00)	0.802 (1.00)	0.28 (1.00)	0.58 (1.00)	0.631 (1.00)
RPTN	11 (9%)	115	0.284 (1.00)	0.715 (1.00)	0.446 (1.00)	0.662 (1.00)	0.122 (1.00)	0.0974 (1.00)	0.0419 (1.00)	0.453 (1.00)	0.949 (1.00)	0.582 (1.00)
HIST1H2BJ	4 (3%)	122	0.619 (1.00)	0.304 (1.00)			0.398 (1.00)	0.209 (1.00)	0.0112 (1.00)	0.0365 (1.00)	0.0851 (1.00)	0.204 (1.00)
SLCO2A1	4 (3%)	122	0.749 (1.00)	0.841 (1.00)			0.744 (1.00)	1 (1.00)	0.322 (1.00)	1 (1.00)	0.0221 (1.00)	0.962 (1.00)
TULP1	3 (2%)	123	0.332 (1.00)	0.704 (1.00)			0.824 (1.00)	1 (1.00)	0.835 (1.00)	1 (1.00)	0.337 (1.00)	0.696 (1.00)
C14ORF21	6 (5%)	120	0.628 (1.00)	0.598 (1.00)	0.0836 (1.00)	0.626 (1.00)	0.844 (1.00)	1 (1.00)	0.75 (1.00)	0.427 (1.00)	0.6 (1.00)	0.423 (1.00)
PPIG	4 (3%)	122	0.122 (1.00)	0.728 (1.00)	0.403 (1.00)	0.82 (1.00)	0.222 (1.00)	0.757 (1.00)	0.594 (1.00)	1 (1.00)	0.0598 (1.00)	0.869 (1.00)
SLC39A4	4 (3%)	122	0.749 (1.00)	0.37 (1.00)	0.182 (1.00)	0.257 (1.00)	0.774 (1.00)	1 (1.00)	0.0524 (1.00)	1 (1.00)	0.834 (1.00)	0.73 (1.00)
CBLL1	4 (3%)	122	0.148 (1.00)	0.621 (1.00)	0.404 (1.00)	0.821 (1.00)	0.834 (1.00)	0.209 (1.00)	0.626 (1.00)	0.179 (1.00)	0.632 (1.00)	0.54 (1.00)
FCGBP	12 (10%)	114	0.15 (1.00)	0.625 (1.00)	0.248 (1.00)	0.111 (1.00)	0.325 (1.00)	0.544 (1.00)	0.0565 (1.00)	0.762 (1.00)	0.0275 (1.00)	0.557 (1.00)
MAMSTR	3 (2%)	123	0.872 (1.00)	0.887 (1.00)	0.403 (1.00)	0.316 (1.00)	0.589 (1.00)	0.538 (1.00)	1 (1.00)	0.357 (1.00)	0.505 (1.00)	0.934 (1.00)
OR2T33	4 (3%)	122	0.357 (1.00)	0.252 (1.00)			0.744 (1.00)	0.379 (1.00)	0.341 (1.00)	0.478 (1.00)	0.75 (1.00)	0.869 (1.00)
KCNB1	5 (4%)	121	0.364 (1.00)	0.348 (1.00)	0.59 (1.00)	1 (1.00)	0.133 (1.00)	0.463 (1.00)	0.171 (1.00)	0.457 (1.00)	0.161 (1.00)	0.344 (1.00)
RREB1	10 (8%)	116	0.656 (1.00)	0.723 (1.00)	0.545 (1.00)	0.603 (1.00)	0.766 (1.00)	0.903 (1.00)	0.725 (1.00)	0.81 (1.00)	0.391 (1.00)	0.623 (1.00)
CANT1	3 (2%)	123	0.654 (1.00)	0.439 (1.00)			0.933 (1.00)	0.542 (1.00)	0.395 (1.00)	0.544 (1.00)	0.937 (1.00)	0.564 (1.00)
SMARCA2	4 (3%)	122	0.358 (1.00)	0.205 (1.00)	0.487 (1.00)	0.628 (1.00)	0.573 (1.00)	0.514 (1.00)	0.359 (1.00)	0.114 (1.00)	0.132 (1.00)	0.253 (1.00)
GIGYF2	4 (3%)	122	0.402 (1.00)	0.623 (1.00)	1 (1.00)	1 (1.00)	0.245 (1.00)	0.26 (1.00)	0.891 (1.00)	0.63 (1.00)	0.57 (1.00)	0.0439 (1.00)
PPP2R5C	5 (4%)	121	0.74 (1.00)	0.577 (1.00)	0.0277 (1.00)	0.85 (1.00)	0.493 (1.00)	0.702 (1.00)	0.861 (1.00)	0.822 (1.00)	0.94 (1.00)	0.718 (1.00)
COPA	5 (4%)	121	0.606 (1.00)	0.758 (1.00)	0.242 (1.00)	0.849 (1.00)	0.121 (1.00)	0.704 (1.00)	0.42 (1.00)	0.822 (1.00)	0.588 (1.00)	0.714 (1.00)
RCOR1	5 (4%)	121	0.793 (1.00)	0.469 (1.00)	0.107 (1.00)	0.741 (1.00)	0.637 (1.00)	0.0227 (1.00)	0.421 (1.00)	0.567 (1.00)	0.462 (1.00)	0.714 (1.00)
PTCD1	3 (2%)	123	0.408 (1.00)	0.558 (1.00)			0.516 (1.00)	0.282 (1.00)	0.703 (1.00)	0.546 (1.00)	0.835 (1.00)	1 (1.00)
SOS1	5 (4%)	121	0.259 (1.00)	0.579 (1.00)	0.303 (1.00)	0.618 (1.00)	0.668 (1.00)	0.0326 (1.00)	0.289 (1.00)	0.18 (1.00)	0.131 (1.00)	0.575 (1.00)
IPO4	3 (2%)	123	1 (1.00)	0.494 (1.00)			0.348 (1.00)	0.759 (1.00)	0.597 (1.00)	1 (1.00)	0.75 (1.00)	0.869 (1.00)
KCNA4	10 (8%)	116	0.557 (1.00)	0.969 (1.00)	0.457 (1.00)	0.526 (1.00)	0.944 (1.00)	0.597 (1.00)	0.711 (1.00)	0.806 (1.00)	0.238 (1.00)	0.526 (1.00)
ZNF644	5 (4%)	121	0.922 (1.00)	0.414 (1.00)	0.486 (1.00)	0.621 (1.00)	0.906 (1.00)	1 (1.00)	0.37 (1.00)	0.679 (1.00)	0.319 (1.00)	1 (1.00)
TEP1	9 (7%)	117	0.64 (1.00)	0.485 (1.00)	0.209 (1.00)	0.23 (1.00)	0.485 (1.00)	0.322 (1.00)	0.411 (1.00)	0.387 (1.00)	0.995 (1.00)	0.424 (1.00)
TMEM184A	4 (3%)	122	0.399 (1.00)	0.905 (1.00)			0.745 (1.00)	0.378 (1.00)	0.561 (1.00)	1 (1.00)	0.459 (1.00)	0.962 (1.00)
NBPF9	8 (6%)	118	0.0162 (1.00)	0.703 (1.00)	0.333 (1.00)	0.195 (1.00)	0.511 (1.00)	1 (1.00)	0.379 (1.00)	1 (1.00)	0.431 (1.00)	1 (1.00)
KIAA1804	7 (6%)	119	0.5 (1.00)	0.00607 (1.00)	0.907 (1.00)	0.596 (1.00)	0.00923 (1.00)	0.369 (1.00)	0.874 (1.00)	0.486 (1.00)	0.662 (1.00)	0.664 (1.00)
MAML3	7 (6%)	119	0.0361 (1.00)	0.0644 (1.00)	0.122 (1.00)	0.492 (1.00)	0.00711 (1.00)	0.154 (1.00)	0.455 (1.00)	0.416 (1.00)	0.0809 (1.00)	0.315 (1.00)
NBPF3	12 (10%)	114	0.665 (1.00)	0.0397 (1.00)	0.229 (1.00)	0.536 (1.00)	0.717 (1.00)	0.062 (1.00)	0.969 (1.00)	0.157 (1.00)	0.866 (1.00)	0.315 (1.00)
TRAF3IP2	4 (3%)	122	0.749 (1.00)	0.73 (1.00)			0.665 (1.00)	0.512 (1.00)	0.945 (1.00)	0.807 (1.00)	0.91 (1.00)	0.497 (1.00)
SMARCC2	5 (4%)	121	0.601 (1.00)	0.0432 (1.00)	0.489 (1.00)	0.848 (1.00)	0.232 (1.00)	0.372 (1.00)	0.202 (1.00)	0.28 (1.00)	0.221 (1.00)	0.033 (1.00)
DNAH5	11 (9%)	115	0.818 (1.00)	0.671 (1.00)	0.115 (1.00)	0.364 (1.00)	0.647 (1.00)	0.915 (1.00)	0.0312 (1.00)	0.67 (1.00)	0.138 (1.00)	0.408 (1.00)
C18ORF19	3 (2%)	123	0.144 (1.00)	1 (1.00)	0.294 (1.00)	0.232 (1.00)
KIF20B	5 (4%)	121	0.0565 (1.00)	1 (1.00)			0.857 (1.00)	0.845 (1.00)	0.011 (1.00)	0.823 (1.00)	0.243 (1.00)	0.101 (1.00)
KDM6A	7 (6%)	119	0.547 (1.00)	0.0407 (1.00)	0.67 (1.00)	0.85 (1.00)	0.361 (1.00)	0.526 (1.00)	0.186 (1.00)	0.619 (1.00)	0.987 (1.00)	0.786 (1.00)
PRG4	12 (10%)	114	0.498 (1.00)	0.146 (1.00)	0.0112 (1.00)	0.464 (1.00)	0.769 (1.00)	0.501 (1.00)	0.391 (1.00)	0.0965 (1.00)	0.482 (1.00)	0.944 (1.00)
PHF14	3 (2%)	123	0.0217 (1.00)	0.338 (1.00)	0.587 (1.00)	1 (1.00)	0.0169 (1.00)	0.123 (1.00)	0.193 (1.00)	0.207 (1.00)	0.0893 (1.00)	0.321 (1.00)
RASGRF2	6 (5%)	120	1 (1.00)	0.658 (1.00)	0.602 (1.00)	0.749 (1.00)	0.812 (1.00)	1 (1.00)	0.337 (1.00)	1 (1.00)	0.398 (1.00)	0.567 (1.00)
PNMAL1	4 (3%)	122	0.501 (1.00)	0.303 (1.00)	0.487 (1.00)	0.623 (1.00)	0.0789 (1.00)	0.512 (1.00)	0.0131 (1.00)	0.113 (1.00)	0.352 (1.00)	0.206 (1.00)
FOXP2	10 (8%)	116	0.873 (1.00)	0.523 (1.00)	0.905 (1.00)	0.577 (1.00)	0.464 (1.00)	0.576 (1.00)	0.844 (1.00)	0.441 (1.00)	0.28 (1.00)	0.41 (1.00)
CGREF1	6 (5%)	120	0.148 (1.00)	0.249 (1.00)	0.765 (1.00)	0.822 (1.00)	0.61 (1.00)	0.528 (1.00)	0.178 (1.00)	0.839 (1.00)	0.929 (1.00)	0.552 (1.00)
ZNF780A	7 (6%)	119	0.597 (1.00)	0.914 (1.00)	0.936 (1.00)	1 (1.00)	0.299 (1.00)	0.369 (1.00)	0.213 (1.00)	0.489 (1.00)	0.0695 (1.00)	0.617 (1.00)
ADC	3 (2%)	123	1 (1.00)	0.125 (1.00)			0.587 (1.00)	0.373 (1.00)	0.363 (1.00)	0.545 (1.00)	0.658 (1.00)	0.163 (1.00)
FHDC1	6 (5%)	120	0.743 (1.00)	0.897 (1.00)	0.1 (1.00)	0.456 (1.00)	0.845 (1.00)	0.309 (1.00)	0.43 (1.00)	0.841 (1.00)	0.109 (1.00)	0.426 (1.00)
ZNF709	9 (7%)	117	0.192 (1.00)	0.906 (1.00)	0.228 (1.00)	1 (1.00)	0.153 (1.00)	0.802 (1.00)	0.324 (1.00)	0.488 (1.00)	0.337 (1.00)	0.281 (1.00)
OR2J2	4 (3%)	122	0.358 (1.00)	0.904 (1.00)			0.872 (1.00)	0.805 (1.00)	0.0532 (1.00)	0.627 (1.00)	0.208 (1.00)	0.0447 (1.00)
PLD2	3 (2%)	123	0.873 (1.00)	0.0607 (1.00)	0.403 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.651 (1.00)	0.755 (1.00)	0.552 (1.00)	1 (1.00)
SYCP1	5 (4%)	121	1 (1.00)	0.643 (1.00)	0.767 (1.00)	0.822 (1.00)	0.747 (1.00)	0.462 (1.00)	0.31 (1.00)	0.145 (1.00)	0.152 (1.00)	0.574 (1.00)
RUNX2	7 (6%)	119	0.711 (1.00)	1 (1.00)	0.0366 (1.00)	0.22 (1.00)	0.637 (1.00)	0.587 (1.00)	0.932 (1.00)	0.301 (1.00)	0.14 (1.00)	0.533 (1.00)
KRTAP5-3	7 (6%)	119	0.682 (1.00)	0.452 (1.00)	0.485 (1.00)	0.621 (1.00)	0.803 (1.00)	0.869 (1.00)	0.677 (1.00)	1 (1.00)	0.402 (1.00)	0.861 (1.00)
SSBP3	3 (2%)	123	1 (1.00)	0.385 (1.00)			0.934 (1.00)	0.371 (1.00)	0.7 (1.00)	0.547 (1.00)	0.185 (1.00)	1 (1.00)
ZNF347	5 (4%)	121	0.923 (1.00)	0.166 (1.00)	0.558 (1.00)	0.663 (1.00)	0.0445 (1.00)	0.0227 (1.00)	0.153 (1.00)	0.568 (1.00)	0.00714 (1.00)	0.194 (1.00)
IPO13	4 (3%)	122	0.145 (1.00)	0.248 (1.00)	0.802 (1.00)	0.495 (1.00)	0.772 (1.00)	0.805 (1.00)	0.623 (1.00)	0.629 (1.00)	0.478 (1.00)	0.758 (1.00)
ACSM4	4 (3%)	122	0.105 (1.00)	0.725 (1.00)	0.0174 (1.00)	0.4 (1.00)	0.575 (1.00)	0.51 (1.00)	0.275 (1.00)	0.806 (1.00)	0.208 (1.00)	0.234 (1.00)
SPAG17	8 (6%)	118	0.6 (1.00)	0.96 (1.00)	0.187 (1.00)	0.617 (1.00)	0.905 (1.00)	0.506 (1.00)	0.194 (1.00)	0.249 (1.00)	0.834 (1.00)	0.665 (1.00)
OGFOD1	3 (2%)	123	0.263 (1.00)	1 (1.00)			0.725 (1.00)	0.196 (1.00)	0.596 (1.00)	0.357 (1.00)	0.686 (1.00)	0.221 (1.00)
ZADH2	3 (2%)	123	0.335 (1.00)	0.196 (1.00)	0.294 (1.00)	0.4 (1.00)	0.0668 (1.00)	0.372 (1.00)	0.167 (1.00)	0.118 (1.00)	0.222 (1.00)	0.0529 (1.00)
G2E3	4 (3%)	122	0.0535 (1.00)	0.62 (1.00)	0.121 (1.00)	0.495 (1.00)	0.872 (1.00)	0.0324 (1.00)	0.289 (1.00)	0.113 (1.00)	0.349 (1.00)	0.252 (1.00)
TPTE2	7 (6%)	119	0.569 (1.00)	0.277 (1.00)	0.486 (1.00)	0.453 (1.00)	0.979 (1.00)	0.765 (1.00)	0.476 (1.00)	0.136 (1.00)	0.113 (1.00)	0.722 (1.00)
SCLT1	5 (4%)	121	0.106 (1.00)	0.391 (1.00)			0.153 (1.00)	0.12 (1.00)	0.459 (1.00)	0.477 (1.00)	0.381 (1.00)	0.117 (1.00)
EAF2	3 (2%)	123	0.874 (1.00)	0.289 (1.00)			0.0991 (1.00)	0.537 (1.00)	0.33 (1.00)	0.208 (1.00)	0.835 (1.00)	0.508 (1.00)
REPS1	4 (3%)	122	0.75 (1.00)	0.253 (1.00)	0.0848 (1.00)	0.625 (1.00)	0.743 (1.00)	1 (1.00)	1 (1.00)	1 (1.00)	0.812 (1.00)	0.822 (1.00)
ZNF43	7 (6%)	119	0.167 (1.00)	0.394 (1.00)	0.205 (1.00)	0.289 (1.00)	0.802 (1.00)	0.765 (1.00)	0.974 (1.00)	0.486 (1.00)	0.386 (1.00)	0.84 (1.00)
PRPF4	3 (2%)	123	0.873 (1.00)	1 (1.00)			0.727 (1.00)	0.197 (1.00)	0.055 (1.00)	0.358 (1.00)	0.717 (1.00)	0.223 (1.00)
CMTM1	3 (2%)	123	0.336 (1.00)	0.703 (1.00)			0.628 (1.00)	0.371 (1.00)	1 (1.00)	0.546 (1.00)	0.291 (1.00)	0.123 (1.00)
L1CAM	6 (5%)	120	0.563 (1.00)	0.807 (1.00)	0.119 (1.00)	0.749 (1.00)	0.879 (1.00)	0.451 (1.00)	0.714 (1.00)	1 (1.00)	0.0952 (1.00)	0.908 (1.00)
MMP14	4 (3%)	122	0.403 (1.00)	0.781 (1.00)	0.0843 (1.00)	0.625 (1.00)	0.49 (1.00)	0.159 (1.00)	0.48 (1.00)	0.806 (1.00)	0.322 (1.00)	0.611 (1.00)
CENPF	5 (4%)	121	0.191 (1.00)	1 (1.00)			0.857 (1.00)	0.846 (1.00)	0.253 (1.00)	0.822 (1.00)	0.0513 (1.00)	0.465 (1.00)
AMAC1L2	6 (5%)	120	0.457 (1.00)	0.0161 (1.00)	0.334 (1.00)	0.495 (1.00)	0.00597 (1.00)	0.0183 (1.00)	0.199 (1.00)	0.352 (1.00)	0.121 (1.00)	0.143 (1.00)
PPARGC1B	5 (4%)	121	0.853 (1.00)	0.243 (1.00)			0.132 (1.00)	0.0484 (1.00)	0.0206 (1.00)	0.0739 (1.00)	0.077 (1.00)	0.16 (1.00)
ERBB2IP	5 (4%)	121	0.693 (1.00)	0.718 (1.00)			0.75 (1.00)	0.235 (1.00)	0.317 (1.00)	0.209 (1.00)	0.806 (1.00)	0.546 (1.00)
PRF1	6 (5%)	120	0.386 (1.00)	0.3 (1.00)	0.768 (1.00)	1 (1.00)	0.397 (1.00)	0.803 (1.00)	0.893 (1.00)	0.477 (1.00)	0.206 (1.00)	0.786 (1.00)
WNT2	6 (5%)	120	0.742 (1.00)	1 (1.00)	0.122 (1.00)	0.496 (1.00)	0.518 (1.00)	1 (1.00)	0.248 (1.00)	0.347 (1.00)	0.466 (1.00)	0.426 (1.00)
R3HDM1	5 (4%)	121	0.601 (1.00)	0.196 (1.00)	0.0368 (1.00)	0.27 (1.00)	0.656 (1.00)	0.372 (1.00)	0.721 (1.00)	0.278 (1.00)	0.81 (1.00)	0.673 (1.00)
THRA	4 (3%)	122	0.276 (1.00)	0.25 (1.00)	0.764 (1.00)	0.822 (1.00)	1 (1.00)	1 (1.00)	0.655 (1.00)	0.803 (1.00)	0.962 (1.00)	0.889 (1.00)
MGAT2	4 (3%)	122	0.246 (1.00)	0.842 (1.00)			1 (1.00)	0.516 (1.00)	0.322 (1.00)	0.803 (1.00)	0.45 (1.00)	0.494 (1.00)
HMX2	4 (3%)	122	0.501 (1.00)	0.62 (1.00)	0.589 (1.00)	1 (1.00)	0.491 (1.00)	0.515 (1.00)	0.29 (1.00)	0.805 (1.00)	0.00507 (1.00)	0.434 (1.00)
KRTAP4-8	5 (4%)	121	0.142 (1.00)	0.196 (1.00)	0.354 (1.00)	0.313 (1.00)	0.96 (1.00)	0.848 (1.00)	0.28 (1.00)	0.28 (1.00)	0.782 (1.00)	0.879 (1.00)
TBC1D1	4 (3%)	122	0.558 (1.00)	0.571 (1.00)	0.766 (1.00)	0.622 (1.00)	0.429 (1.00)	0.208 (1.00)	0.503 (1.00)	0.178 (1.00)	0.859 (1.00)	0.266 (1.00)
MTR	7 (6%)	119	0.441 (1.00)	0.953 (1.00)	0.00574 (1.00)	0.512 (1.00)	0.427 (1.00)	0.267 (1.00)	0.796 (1.00)	0.484 (1.00)	0.866 (1.00)	0.901 (1.00)
CCDC103	3 (2%)	123	0.874 (1.00)	1 (1.00)			0.412 (1.00)	0.757 (1.00)	1 (1.00)	1 (1.00)	0.0656 (1.00)	0.629 (1.00)
RBBP8	5 (4%)	121	0.853 (1.00)	0.716 (1.00)	0.132 (1.00)	0.495 (1.00)	0.668 (1.00)	0.514 (1.00)	1 (1.00)	0.628 (1.00)	0.224 (1.00)	1 (1.00)
FAM102A	4 (3%)	122	0.126 (1.00)	0.904 (1.00)	0.375 (1.00)	0.94 (1.00)	0.217 (1.00)	0.378 (1.00)	0.56 (1.00)	1 (1.00)	0.341 (1.00)	0.962 (1.00)
FAM18A	3 (2%)	123	1 (1.00)	0.888 (1.00)			0.32 (1.00)	0.284 (1.00)	0.911 (1.00)	0.756 (1.00)	0.422 (1.00)	0.369 (1.00)
AMAC1	7 (6%)	119	0.297 (1.00)	0.347 (1.00)	0.59 (1.00)	1 (1.00)	0.978 (1.00)	0.128 (1.00)	0.561 (1.00)	0.203 (1.00)	0.171 (1.00)	0.879 (1.00)
NFATC2	6 (5%)	120	0.0963 (1.00)	0.0532 (1.00)	0.13 (1.00)	0.496 (1.00)	0.117 (1.00)	0.378 (1.00)	0.322 (1.00)	0.524 (1.00)	0.16 (1.00)	0.12 (1.00)
RNF128	5 (4%)	121	0.0787 (1.00)	0.81 (1.00)			0.708 (1.00)	0.181 (1.00)	0.0567 (1.00)	0.357 (1.00)	0.0764 (1.00)	0.544 (1.00)
PCLO	8 (6%)	118	0.0229 (1.00)	0.527 (1.00)	0.527 (1.00)	0.884 (1.00)	0.199 (1.00)	0.868 (1.00)	0.77 (1.00)	0.642 (1.00)	0.0938 (1.00)	0.0777 (1.00)
NCOA7	3 (2%)	123	0.179 (1.00)	0.703 (1.00)	0.192 (1.00)	0.165 (1.00)	0.827 (1.00)	1 (1.00)	0.765 (1.00)	1 (1.00)	0.657 (1.00)	0.93 (1.00)
POM121	5 (4%)	121	1 (1.00)	0.935 (1.00)	0.373 (1.00)	0.787 (1.00)	0.458 (1.00)	0.457 (1.00)	0.307 (1.00)	1 (1.00)	0.128 (1.00)	1 (1.00)
HIST1H2BK	4 (3%)	122	0.313 (1.00)	0.78 (1.00)	0.589 (1.00)	0.752 (1.00)	0.621 (1.00)	0.515 (1.00)	0.502 (1.00)	0.805 (1.00)	0.754 (1.00)	0.889 (1.00)
ZHX3	7 (6%)	119	0.298 (1.00)	0.238 (1.00)	0.12 (1.00)	0.679 (1.00)	0.287 (1.00)	0.205 (1.00)	0.0295 (1.00)	0.288 (1.00)	0.828 (1.00)	0.597 (1.00)
RGPD3	8 (6%)	118	0.23 (1.00)	0.139 (1.00)	1 (1.00)	0.743 (1.00)	0.12 (1.00)	1 (1.00)	0.0557 (1.00)	0.228 (1.00)	0.541 (1.00)	0.0986 (1.00)
ZNF554	3 (2%)	123	0.872 (1.00)	0.888 (1.00)			0.933 (1.00)	0.375 (1.00)	1 (1.00)	0.546 (1.00)	0.658 (1.00)	0.424 (1.00)
RETN	3 (2%)	123	0.561 (1.00)	0.56 (1.00)			0.514 (1.00)	0.282 (1.00)	0.913 (1.00)	0.754 (1.00)	0.425 (1.00)	0.323 (1.00)
RSC1A1	3 (2%)	123	0.873 (1.00)	0.386 (1.00)			0.551 (1.00)	1 (1.00)	0.362 (1.00)	0.546 (1.00)	0.267 (1.00)	0.425 (1.00)
RYR2	14 (11%)	112	0.795 (1.00)	0.309 (1.00)	0.495 (1.00)	0.95 (1.00)	0.693 (1.00)	0.249 (1.00)	0.802 (1.00)	0.148 (1.00)	0.638 (1.00)	0.588 (1.00)
HNRNPCL1	6 (5%)	120	0.51 (1.00)	0.661 (1.00)	0.449 (1.00)	0.292 (1.00)	0.845 (1.00)	0.529 (1.00)	0.36 (1.00)	0.72 (1.00)	0.0964 (1.00)	0.11 (1.00)
SEPHS2	5 (4%)	121	1 (1.00)	0.464 (1.00)	0.648 (1.00)	0.847 (1.00)	0.469 (1.00)	0.571 (1.00)	0.698 (1.00)	1 (1.00)	0.959 (1.00)	0.745 (1.00)
KIAA0020	3 (2%)	123	0.0923 (1.00)	0.196 (1.00)			0.0994 (1.00)	0.539 (1.00)	0.765 (1.00)	0.119 (1.00)	0.167 (1.00)	0.251 (1.00)
ACVR2A	3 (2%)	123	0.177 (1.00)	0.196 (1.00)			0.219 (1.00)	0.759 (1.00)	0.43 (1.00)	1 (1.00)	0.0603 (1.00)	0.37 (1.00)
CCDC158	4 (3%)	122	0.0764 (1.00)	0.623 (1.00)	0.403 (1.00)	0.624 (1.00)	0.0796 (1.00)	0.513 (1.00)	0.44 (1.00)	1 (1.00)	0.635 (1.00)	0.465 (1.00)
FTH1	3 (2%)	123	0.872 (1.00)	0.127 (1.00)			0.629 (1.00)	0.0585 (1.00)	0.166 (1.00)	0.119 (1.00)	0.169 (1.00)	0.251 (1.00)
BCKDHA	3 (2%)	123	0.408 (1.00)	0.62 (1.00)			1 (1.00)	1 (1.00)	0.55 (1.00)	0.756 (1.00)	0.423 (1.00)	0.869 (1.00)
SLC34A2	5 (4%)	121	1 (1.00)	0.578 (1.00)	0.0557 (1.00)	0.743 (1.00)	0.96 (1.00)	1 (1.00)	0.28 (1.00)	0.679 (1.00)	0.181 (1.00)	0.576 (1.00)
RAB11FIP5	3 (2%)	123	0.756 (1.00)	0.624 (1.00)	1 (1.00)	1 (1.00)	0.267 (1.00)	1 (1.00)	0.912 (1.00)	0.754 (1.00)	0.834 (1.00)	0.37 (1.00)
ATP6V1A	3 (2%)	123	0.117 (1.00)	0.887 (1.00)			0.59 (1.00)	0.281 (1.00)	1 (1.00)	0.753 (1.00)
TMEM41B	3 (2%)	123	0.754 (1.00)	0.622 (1.00)	0.766 (1.00)	0.399 (1.00)	1 (1.00)	0.76 (1.00)	0.273 (1.00)	0.756 (1.00)	0.575 (1.00)	0.476 (1.00)
GIGYF1	3 (2%)	123	0.653 (1.00)	1 (1.00)			0.409 (1.00)	0.759 (1.00)	0.509 (1.00)	1 (1.00)	0.0898 (1.00)	0.87 (1.00)
EPB41L4B	4 (3%)	122	0.903 (1.00)	0.251 (1.00)			0.382 (1.00)	0.76 (1.00)	0.649 (1.00)	0.756 (1.00)	0.573 (1.00)	0.284 (1.00)
EPHX1	4 (3%)	122	0.358 (1.00)	0.673 (1.00)	0.0411 (1.00)	0.228 (1.00)	0.288 (1.00)	0.374 (1.00)	0.197 (1.00)	1 (1.00)	0.038 (1.00)	0.964 (1.00)
LUZP1	3 (2%)	123	0.407 (1.00)	0.0603 (1.00)			1 (1.00)	1 (1.00)	0.55 (1.00)	0.756 (1.00)	0.601 (1.00)	0.87 (1.00)
ZHX1	3 (2%)	123	0.407 (1.00)	0.338 (1.00)			0.0161 (1.00)	0.122 (1.00)	0.0549 (1.00)	0.209 (1.00)	0.551 (1.00)	0.32 (1.00)
GNAL	3 (2%)	123	1 (1.00)	0.0602 (1.00)			1 (1.00)	0.541 (1.00)	0.835 (1.00)	0.544 (1.00)	0.938 (1.00)	0.933 (1.00)
DOCK10	6 (5%)	120	0.558 (1.00)	0.765 (1.00)	0.239 (1.00)	0.364 (1.00)	0.222 (1.00)	0.31 (1.00)	0.33 (1.00)	1 (1.00)	0.293 (1.00)	0.908 (1.00)
CDC25A	3 (2%)	123	0.143 (1.00)	1 (1.00)			0.827 (1.00)	1 (1.00)	0.835 (1.00)	1 (1.00)	0.0623 (1.00)	0.748 (1.00)
VPS24	3 (2%)	123	0.755 (1.00)	0.622 (1.00)	0.486 (1.00)	0.623 (1.00)	0.379 (1.00)	0.76 (1.00)	0.273 (1.00)	1 (1.00)	0.604 (1.00)	1 (1.00)
F5	11 (9%)	115	0.443 (1.00)	0.0968 (1.00)	0.981 (1.00)	0.886 (1.00)	0.24 (1.00)	0.567 (1.00)	0.268 (1.00)	0.361 (1.00)	0.848 (1.00)	0.994 (1.00)
AFF2	6 (5%)	120	0.455 (1.00)	0.847 (1.00)	0.689 (1.00)	0.939 (1.00)	0.535 (1.00)	0.529 (1.00)	0.213 (1.00)	0.841 (1.00)	0.141 (1.00)	0.233 (1.00)
ZFHX3	10 (8%)	116	0.669 (1.00)	0.917 (1.00)	0.0281 (1.00)	0.0539 (1.00)	0.461 (1.00)	0.573 (1.00)	0.677 (1.00)	0.339 (1.00)	0.104 (1.00)	0.92 (1.00)
RNF168	4 (3%)	122	0.106 (1.00)	0.782 (1.00)			1 (1.00)	0.653 (1.00)	1 (1.00)	0.478 (1.00)	0.813 (1.00)	0.728 (1.00)
TGFBI	6 (5%)	120	0.327 (1.00)	0.576 (1.00)	0.056 (1.00)	0.408 (1.00)	0.223 (1.00)	0.526 (1.00)	0.788 (1.00)	0.619 (1.00)	0.0374 (1.00)	0.828 (1.00)
KLK13	5 (4%)	121	0.922 (1.00)	0.68 (1.00)	0.0189 (1.00)	0.314 (1.00)	0.493 (1.00)	0.847 (1.00)	0.961 (1.00)	0.822 (1.00)	0.807 (1.00)	0.798 (1.00)
ASS1	4 (3%)	122	0.104 (1.00)	0.304 (1.00)			0.103 (1.00)	0.209 (1.00)	0.342 (1.00)	0.18 (1.00)	0.261 (1.00)	0.0322 (1.00)
FOXD4	6 (5%)	120	0.407 (1.00)	0.766 (1.00)	0.151 (1.00)	0.128 (1.00)	0.702 (1.00)	1 (1.00)	0.0299 (1.00)	0.345 (1.00)	0.447 (1.00)	1 (1.00)
PVRL4	3 (2%)	123	0.563 (1.00)	0.0611 (1.00)			0.445 (1.00)	0.279 (1.00)	0.0651 (1.00)	0.547 (1.00)	0.717 (1.00)	1 (1.00)
NBEA	3 (2%)	123	0.331 (1.00)	0.624 (1.00)			1 (1.00)	0.76 (1.00)	0.274 (1.00)	0.756 (1.00)
ZNF737	5 (4%)	121	0.922 (1.00)	0.164 (1.00)	0.918 (1.00)	0.455 (1.00)	0.856 (1.00)	1 (1.00)	0.421 (1.00)	1 (1.00)	0.564 (1.00)	0.578 (1.00)
CPVL	3 (2%)	123	0.756 (1.00)	0.621 (1.00)			0.935 (1.00)	0.28 (1.00)	0.912 (1.00)	0.754 (1.00)	0.657 (1.00)	0.478 (1.00)
AGAP6	5 (4%)	121	0.856 (1.00)	0.718 (1.00)	0.0552 (1.00)	0.527 (1.00)	0.0226 (1.00)	0.291 (1.00)	0.0504 (1.00)	0.568 (1.00)	0.59 (1.00)	0.396 (1.00)

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00809 (Fisher's exact test), Q value = 1

Table S1. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KRAS MUTATED	16	47	17	20
KRAS WILD-TYPE	3	6	13	4

Figure S1. Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 1

Table S2. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KRAS MUTATED	31	19	30	19
KRAS WILD-TYPE	4	11	4	7

Figure S2. Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S3. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KRAS MUTATED	22	16	10	7	11
KRAS WILD-TYPE	7	2	3	2	2

'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0347 (Fisher's exact test), Q value = 1

Table S4. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KRAS MUTATED	27	17	8	5	9
KRAS WILD-TYPE	5	1	4	5	1

Figure S3. Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 1

Table S5. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KRAS MUTATED	23	10	25	19	16
KRAS WILD-TYPE	3	10	3	6	4

Figure S4. Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.033

Table S6. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KRAS MUTATED	42	45	6
KRAS WILD-TYPE	6	8	12

Figure S5. Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 1

Table S7. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KRAS MUTATED	34	24	16	10	9
KRAS WILD-TYPE	3	7	1	11	4

Figure S6. Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00043 (Fisher's exact test), Q value = 0.94

Table S8. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KRAS MUTATED	63	20	10
KRAS WILD-TYPE	8	7	11

Figure S7. Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00308 (Fisher's exact test), Q value = 1

Table S9. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KRAS MUTATED	17	6	7	5	30	22	4
KRAS WILD-TYPE	1	2	3	3	6	3	8

Figure S8. Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.033

Table S10. Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KRAS MUTATED	16	30	8	26	11	0
KRAS WILD-TYPE	1	2	5	6	5	7

Figure S9. Get High-res Image Gene #1: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00972 (Fisher's exact test), Q value = 1

Table S11. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TP53 MUTATED	12	42	13	14
TP53 WILD-TYPE	7	11	17	10

Figure S10. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S12. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TP53 MUTATED	24	14	25	17
TP53 WILD-TYPE	11	16	9	9

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S13. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TP53 MUTATED	21	13	8	4	8
TP53 WILD-TYPE	8	5	5	5	5

'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S14. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TP53 MUTATED	24	14	5	3	8
TP53 WILD-TYPE	8	4	7	7	2

Figure S11. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S15. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TP53 MUTATED	16	10	23	15	12
TP53 WILD-TYPE	10	10	5	10	8

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 1

Table S16. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TP53 MUTATED	36	33	7
TP53 WILD-TYPE	12	20	11

Figure S12. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 1

Table S17. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TP53 MUTATED	26	18	14	8	10
TP53 WILD-TYPE	11	13	3	13	3

Figure S13. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S18. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TP53 MUTATED	49	17	10
TP53 WILD-TYPE	22	10	11

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S19. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TP53 MUTATED	15	5	6	4	26	14	5
TP53 WILD-TYPE	3	3	4	4	10	11	7

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00952 (Fisher's exact test), Q value = 1

Table S20. Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TP53 MUTATED	13	23	7	21	11	0
TP53 WILD-TYPE	4	9	6	11	5	7

Figure S14. Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAMLD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S21. Gene #3: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MAMLD1 MUTATED	4	12	4	8
MAMLD1 WILD-TYPE	15	41	26	16

'MAMLD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S22. Gene #3: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MAMLD1 MUTATED	8	5	11	4
MAMLD1 WILD-TYPE	27	25	23	22

'MAMLD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S23. Gene #3: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MAMLD1 MUTATED	5	4	1	3	2
MAMLD1 WILD-TYPE	24	14	12	6	11

'MAMLD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S24. Gene #3: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MAMLD1 MUTATED	7	3	3	2	0
MAMLD1 WILD-TYPE	25	15	9	8	10

'MAMLD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S25. Gene #3: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MAMLD1 MUTATED	9	7	7	2	3
MAMLD1 WILD-TYPE	17	13	21	23	17

'MAMLD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S26. Gene #3: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MAMLD1 MUTATED	7	17	4
MAMLD1 WILD-TYPE	41	36	14

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S27. Gene #3: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MAMLD1 MUTATED	11	5	3	6	3
MAMLD1 WILD-TYPE	26	26	14	15	10

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S28. Gene #3: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MAMLD1 MUTATED	20	3	5
MAMLD1 WILD-TYPE	51	24	16

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S29. Gene #3: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MAMLD1 MUTATED	2	4	3	2	9	5	3
MAMLD1 WILD-TYPE	16	4	7	6	27	20	9

'MAMLD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0841 (Fisher's exact test), Q value = 1

Table S30. Gene #3: 'MAMLD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MAMLD1 MUTATED	5	11	4	4	1	3
MAMLD1 WILD-TYPE	12	21	9	28	15	4

'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00226 (Fisher's exact test), Q value = 1

Table S31. Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CDKN2A MUTATED	2	19	1	5
CDKN2A WILD-TYPE	17	34	29	19

Figure S15. Get High-res Image Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 1

Table S32. Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CDKN2A MUTATED	13	5	8	1
CDKN2A WILD-TYPE	22	25	26	25

Figure S16. Get High-res Image Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 1

Table S33. Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CDKN2A MUTATED	6	3	6	3	0
CDKN2A WILD-TYPE	23	15	7	6	13

Figure S17. Get High-res Image Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S34. Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CDKN2A MUTATED	8	3	3	2	2
CDKN2A WILD-TYPE	24	15	9	8	8

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S35. Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CDKN2A MUTATED	5	6	8	6	1
CDKN2A WILD-TYPE	21	14	20	19	19

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S36. Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CDKN2A MUTATED	12	13	1
CDKN2A WILD-TYPE	36	40	17

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S37. Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CDKN2A MUTATED	9	5	5	3	4
CDKN2A WILD-TYPE	28	26	12	18	9

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S38. Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CDKN2A MUTATED	15	8	3
CDKN2A WILD-TYPE	56	19	18

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S39. Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CDKN2A MUTATED	6	1	1	0	7	10	1
CDKN2A WILD-TYPE	12	7	9	8	29	15	11

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 1

Table S40. Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CDKN2A MUTATED	1	10	1	12	2	0
CDKN2A WILD-TYPE	16	22	12	20	14	7

Figure S18. Get High-res Image Gene #4: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CD99L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S41. Gene #5: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CD99L2 MUTATED	3	9	3	5
CD99L2 WILD-TYPE	16	44	27	19

'CD99L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S42. Gene #5: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CD99L2 MUTATED	5	6	5	4
CD99L2 WILD-TYPE	30	24	29	22

'CD99L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S43. Gene #5: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CD99L2 MUTATED	3	2	1	2	1
CD99L2 WILD-TYPE	26	16	12	7	12

'CD99L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S44. Gene #5: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CD99L2 MUTATED	3	2	2	2	0
CD99L2 WILD-TYPE	29	16	10	8	10

'CD99L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S45. Gene #5: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CD99L2 MUTATED	5	2	4	6	3
CD99L2 WILD-TYPE	21	18	24	19	17

'CD99L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S46. Gene #5: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CD99L2 MUTATED	10	8	2
CD99L2 WILD-TYPE	38	45	16

'CD99L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S47. Gene #5: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CD99L2 MUTATED	7	4	6	1	2
CD99L2 WILD-TYPE	30	27	11	20	11

'CD99L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S48. Gene #5: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CD99L2 MUTATED	12	6	2
CD99L2 WILD-TYPE	59	21	19

'CD99L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 1

Table S49. Gene #5: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CD99L2 MUTATED	5	3	0	3	6	2	1
CD99L2 WILD-TYPE	13	5	10	5	30	23	11

'CD99L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S50. Gene #5: 'CD99L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CD99L2 MUTATED	4	6	2	7	1	0
CD99L2 WILD-TYPE	13	26	11	25	15	7

'IPP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 1

Table S51. Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IPP MUTATED	0	9	9	2
IPP WILD-TYPE	19	44	21	22

Figure S19. Get High-res Image Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IPP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S52. Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IPP MUTATED	5	2	7	6
IPP WILD-TYPE	30	28	27	20

'IPP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S53. Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
IPP MUTATED	4	2	4	1	4
IPP WILD-TYPE	25	16	9	8	9

'IPP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S54. Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
IPP MUTATED	4	2	4	1	4
IPP WILD-TYPE	28	16	8	9	6

'IPP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S55. Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IPP MUTATED	6	3	5	1	5
IPP WILD-TYPE	20	17	23	24	15

'IPP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S56. Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IPP MUTATED	5	10	5
IPP WILD-TYPE	43	43	13

'IPP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S57. Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IPP MUTATED	6	7	1	3	3
IPP WILD-TYPE	31	24	16	18	10

'IPP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S58. Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IPP MUTATED	13	2	5
IPP WILD-TYPE	58	25	16

'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S59. Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IPP MUTATED	1	1	2	2	5	7	1
IPP WILD-TYPE	17	7	8	6	31	18	11

'IPP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S60. Gene #6: 'IPP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IPP MUTATED	2	5	3	2	6	1
IPP WILD-TYPE	15	27	10	30	10	6

'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S61. Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IRS1 MUTATED	3	8	6	3
IRS1 WILD-TYPE	16	45	24	21

'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S62. Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IRS1 MUTATED	6	5	5	4
IRS1 WILD-TYPE	29	25	29	22

'IRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S63. Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
IRS1 MUTATED	3	2	2	1	3
IRS1 WILD-TYPE	26	16	11	8	10

'IRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S64. Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
IRS1 MUTATED	4	2	2	1	2
IRS1 WILD-TYPE	28	16	10	9	8

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S65. Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IRS1 MUTATED	6	3	5	3	3
IRS1 WILD-TYPE	20	17	23	22	17

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S66. Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IRS1 MUTATED	9	9	2
IRS1 WILD-TYPE	39	44	16

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S67. Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IRS1 MUTATED	5	2	5	4	4
IRS1 WILD-TYPE	32	29	12	17	9

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S68. Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IRS1 MUTATED	12	5	3
IRS1 WILD-TYPE	59	22	18

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 1

Table S69. Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IRS1 MUTATED	6	3	2	3	4	1	1
IRS1 WILD-TYPE	12	5	8	5	32	24	11

Figure S20. Get High-res Image Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 1

Table S70. Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IRS1 MUTATED	7	2	3	6	2	0
IRS1 WILD-TYPE	10	30	10	26	14	7

Figure S21. Get High-res Image Gene #7: 'IRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C19ORF55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S71. Gene #8: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C19ORF55 MUTATED	4	8	2	2
C19ORF55 WILD-TYPE	15	45	28	22

'C19ORF55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S72. Gene #8: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C19ORF55 MUTATED	4	4	5	3
C19ORF55 WILD-TYPE	31	26	29	23

'C19ORF55 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S73. Gene #8: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
C19ORF55 MUTATED	6	2	1	1	1
C19ORF55 WILD-TYPE	23	16	12	8	12

'C19ORF55 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S74. Gene #8: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
C19ORF55 MUTATED	6	3	1	1	0
C19ORF55 WILD-TYPE	26	15	11	9	10

'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S75. Gene #8: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C19ORF55 MUTATED	3	4	3	3	2
C19ORF55 WILD-TYPE	23	16	25	22	18

'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S76. Gene #8: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C19ORF55 MUTATED	8	5	2
C19ORF55 WILD-TYPE	40	48	16

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S77. Gene #8: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C19ORF55 MUTATED	5	2	2	5	1
C19ORF55 WILD-TYPE	32	29	15	16	12

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S78. Gene #8: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C19ORF55 MUTATED	11	2	2
C19ORF55 WILD-TYPE	60	25	19

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S79. Gene #8: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C19ORF55 MUTATED	3	1	1	2	4	1	3
C19ORF55 WILD-TYPE	15	7	9	6	32	24	9

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S80. Gene #8: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C19ORF55 MUTATED	4	2	3	5	0	1
C19ORF55 WILD-TYPE	13	30	10	27	16	6

'C15ORF24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 1

Table S81. Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C15ORF24 MUTATED	6	5	3	1
C15ORF24 WILD-TYPE	13	48	27	23

'C15ORF24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S82. Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C15ORF24 MUTATED	4	4	4	3
C15ORF24 WILD-TYPE	31	26	30	23

'C15ORF24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S83. Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
C15ORF24 MUTATED	2	2	3	2	1
C15ORF24 WILD-TYPE	27	16	10	7	12

'C15ORF24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S84. Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
C15ORF24 MUTATED	4	1	4	0	1
C15ORF24 WILD-TYPE	28	17	8	10	9

'C15ORF24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S85. Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C15ORF24 MUTATED	0	2	5	5	3
C15ORF24 WILD-TYPE	26	18	23	20	17

'C15ORF24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0524 (Fisher's exact test), Q value = 1

Table S86. Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C15ORF24 MUTATED	10	5	0
C15ORF24 WILD-TYPE	38	48	18

'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S87. Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C15ORF24 MUTATED	5	6	2	1	1
C15ORF24 WILD-TYPE	32	25	15	20	12

'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S88. Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C15ORF24 MUTATED	10	4	1
C15ORF24 WILD-TYPE	61	23	20

'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 1

Table S89. Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C15ORF24 MUTATED	3	2	3	3	2	2	0
C15ORF24 WILD-TYPE	15	6	7	5	34	23	12

Figure S22. Get High-res Image Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S90. Gene #9: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C15ORF24 MUTATED	3	2	2	7	1	0
C15ORF24 WILD-TYPE	14	30	11	25	15	7

'QRICH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S91. Gene #10: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
QRICH1 MUTATED	3	6	4	1
QRICH1 WILD-TYPE	16	47	26	23

'QRICH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S92. Gene #10: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
QRICH1 MUTATED	2	2	7	3
QRICH1 WILD-TYPE	33	28	27	23

'QRICH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S93. Gene #10: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
QRICH1 MUTATED	2	2	2	1	2
QRICH1 WILD-TYPE	27	16	11	8	11

'QRICH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S94. Gene #10: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
QRICH1 MUTATED	3	2	2	0	2
QRICH1 WILD-TYPE	29	16	10	10	8

'QRICH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S95. Gene #10: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
QRICH1 MUTATED	2	2	4	2	4
QRICH1 WILD-TYPE	24	18	24	23	16

'QRICH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S96. Gene #10: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
QRICH1 MUTATED	5	8	1
QRICH1 WILD-TYPE	43	45	17

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S97. Gene #10: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
QRICH1 MUTATED	4	6	1	2	1
QRICH1 WILD-TYPE	33	25	16	19	12

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S98. Gene #10: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
QRICH1 MUTATED	10	2	2
QRICH1 WILD-TYPE	61	25	19

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S99. Gene #10: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
QRICH1 MUTATED	1	1	2	3	3	3	1
QRICH1 WILD-TYPE	17	7	8	5	33	22	11

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S100. Gene #10: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
QRICH1 MUTATED	0	4	4	4	2	0
QRICH1 WILD-TYPE	17	28	9	28	14	7

'IFT46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S101. Gene #11: 'IFT46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IFT46 MUTATED	1	4	4	4
IFT46 WILD-TYPE	18	49	26	20

'IFT46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S102. Gene #11: 'IFT46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IFT46 MUTATED	4	3	4	2
IFT46 WILD-TYPE	31	27	30	24

'IFT46 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S103. Gene #11: 'IFT46 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
IFT46 MUTATED	4	2	0	2	2
IFT46 WILD-TYPE	25	16	13	7	11

'IFT46 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S104. Gene #11: 'IFT46 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
IFT46 MUTATED	7	1	0	1	1
IFT46 WILD-TYPE	25	17	12	9	9

'IFT46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S105. Gene #11: 'IFT46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IFT46 MUTATED	3	1	3	3	2
IFT46 WILD-TYPE	23	19	25	22	18

'IFT46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S106. Gene #11: 'IFT46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IFT46 MUTATED	4	6	2
IFT46 WILD-TYPE	44	47	16

'IFT46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S107. Gene #11: 'IFT46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IFT46 MUTATED	5	3	2	2	0
IFT46 WILD-TYPE	32	28	15	19	13

'IFT46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S108. Gene #11: 'IFT46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IFT46 MUTATED	9	2	1
IFT46 WILD-TYPE	62	25	20

'IFT46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S109. Gene #11: 'IFT46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IFT46 MUTATED	0	1	2	0	5	1	3
IFT46 WILD-TYPE	18	7	8	8	31	24	9

'IFT46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S110. Gene #11: 'IFT46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IFT46 MUTATED	3	4	1	3	0	1
IFT46 WILD-TYPE	14	28	12	29	16	6

'ARHGAP18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S111. Gene #12: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ARHGAP18 MUTATED	3	3	4	2
ARHGAP18 WILD-TYPE	16	50	26	22

'ARHGAP18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S112. Gene #12: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ARHGAP18 MUTATED	1	4	4	3
ARHGAP18 WILD-TYPE	34	26	30	23

'ARHGAP18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S113. Gene #12: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ARHGAP18 MUTATED	2	3	1	0	0
ARHGAP18 WILD-TYPE	27	15	12	9	13

'ARHGAP18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S114. Gene #12: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ARHGAP18 MUTATED	3	3	0	0	0
ARHGAP18 WILD-TYPE	29	15	12	10	10

'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S115. Gene #12: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ARHGAP18 MUTATED	0	3	5	3	1
ARHGAP18 WILD-TYPE	26	17	23	22	19

'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S116. Gene #12: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ARHGAP18 MUTATED	3	8	1
ARHGAP18 WILD-TYPE	45	45	17

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S117. Gene #12: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ARHGAP18 MUTATED	3	3	2	3	1
ARHGAP18 WILD-TYPE	34	28	15	18	12

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S118. Gene #12: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ARHGAP18 MUTATED	8	3	1
ARHGAP18 WILD-TYPE	63	24	20

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S119. Gene #12: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ARHGAP18 MUTATED	1	2	1	2	3	2	1
ARHGAP18 WILD-TYPE	17	6	9	6	33	23	11

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S120. Gene #12: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ARHGAP18 MUTATED	2	4	2	3	0	1
ARHGAP18 WILD-TYPE	15	28	11	29	16	6

'EME2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S121. Gene #13: 'EME2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EME2 MUTATED	1	5	3	2
EME2 WILD-TYPE	18	48	27	22

'EME2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S122. Gene #13: 'EME2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EME2 MUTATED	3	1	4	3
EME2 WILD-TYPE	32	29	30	23

'EME2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S123. Gene #13: 'EME2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EME2 MUTATED	3	2	0	1	1
EME2 WILD-TYPE	26	16	13	8	12

'EME2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S124. Gene #13: 'EME2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EME2 MUTATED	5	2	0	0	0
EME2 WILD-TYPE	27	16	12	10	10

'EME2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S125. Gene #13: 'EME2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EME2 MUTATED	1	1	3	3	3
EME2 WILD-TYPE	25	19	25	22	17

'EME2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S126. Gene #13: 'EME2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EME2 MUTATED	4	6	1
EME2 WILD-TYPE	44	47	17

'EME2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S127. Gene #13: 'EME2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EME2 MUTATED	4	4	1	2	0
EME2 WILD-TYPE	33	27	16	19	13

'EME2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S128. Gene #13: 'EME2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EME2 MUTATED	9	1	1
EME2 WILD-TYPE	62	26	20

'EME2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S129. Gene #13: 'EME2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EME2 MUTATED	1	1	1	1	3	3	1
EME2 WILD-TYPE	17	7	9	7	33	22	11

'EME2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S130. Gene #13: 'EME2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EME2 MUTATED	3	3	1	3	1	0
EME2 WILD-TYPE	14	29	12	29	15	7

'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S131. Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SMAD4 MUTATED	5	12	3	6
SMAD4 WILD-TYPE	14	41	27	18

'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S132. Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SMAD4 MUTATED	10	5	7	4
SMAD4 WILD-TYPE	25	25	27	22

'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 1

Table S133. Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SMAD4 MUTATED	8	2	3	5	1
SMAD4 WILD-TYPE	21	16	10	4	12

'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S134. Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SMAD4 MUTATED	10	3	1	4	1
SMAD4 WILD-TYPE	22	15	11	6	9

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S135. Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SMAD4 MUTATED	8	3	5	6	3
SMAD4 WILD-TYPE	18	17	23	19	17

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 1

Table S136. Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SMAD4 MUTATED	10	15	0
SMAD4 WILD-TYPE	38	38	18

Figure S23. Get High-res Image Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S137. Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SMAD4 MUTATED	10	6	4	3	2
SMAD4 WILD-TYPE	27	25	13	18	11

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S138. Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SMAD4 MUTATED	17	6	2
SMAD4 WILD-TYPE	54	21	19

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 1

Table S139. Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SMAD4 MUTATED	7	4	2	0	7	5	0
SMAD4 WILD-TYPE	11	4	8	8	29	20	12

Figure S24. Get High-res Image Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 1

Table S140. Gene #14: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SMAD4 MUTATED	8	4	3	8	2	0
SMAD4 WILD-TYPE	9	28	10	24	14	7

'NPNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S141. Gene #15: 'NPNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NPNT MUTATED	1	5	4	2
NPNT WILD-TYPE	18	48	26	22

'NPNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S142. Gene #15: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NPNT MUTATED	4	3	1	4
NPNT WILD-TYPE	31	27	33	22

'NPNT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S143. Gene #15: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NPNT MUTATED	3	2	1	1	1
NPNT WILD-TYPE	26	16	12	8	12

'NPNT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S144. Gene #15: 'NPNT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NPNT MUTATED	3	2	2	1	0
NPNT WILD-TYPE	29	16	10	9	10

'NPNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S145. Gene #15: 'NPNT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NPNT MUTATED	2	3	2	2	3
NPNT WILD-TYPE	24	17	26	23	17

'NPNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S146. Gene #15: 'NPNT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NPNT MUTATED	5	4	3
NPNT WILD-TYPE	43	49	15

'NPNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S147. Gene #15: 'NPNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NPNT MUTATED	3	3	2	2	2
NPNT WILD-TYPE	34	28	15	19	11

'NPNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S148. Gene #15: 'NPNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NPNT MUTATED	4	4	4
NPNT WILD-TYPE	67	23	17

'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S149. Gene #15: 'NPNT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NPNT MUTATED	2	0	0	1	4	4	1
NPNT WILD-TYPE	16	8	10	7	32	21	11

'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S150. Gene #15: 'NPNT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NPNT MUTATED	1	2	1	3	4	1
NPNT WILD-TYPE	16	30	12	29	12	6

'TNFSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S151. Gene #16: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TNFSF9 MUTATED	1	4	6	1
TNFSF9 WILD-TYPE	18	49	24	23

'TNFSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S152. Gene #16: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TNFSF9 MUTATED	2	4	3	3
TNFSF9 WILD-TYPE	33	26	31	23

'TNFSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S153. Gene #16: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TNFSF9 MUTATED	3	2	2	1	0
TNFSF9 WILD-TYPE	26	16	11	8	13

'TNFSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S154. Gene #16: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TNFSF9 MUTATED	4	2	0	0	2
TNFSF9 WILD-TYPE	28	16	12	10	8

'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S155. Gene #16: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TNFSF9 MUTATED	0	1	5	4	2
TNFSF9 WILD-TYPE	26	19	23	21	18

'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S156. Gene #16: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TNFSF9 MUTATED	4	6	2
TNFSF9 WILD-TYPE	44	47	16

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S157. Gene #16: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TNFSF9 MUTATED	3	4	2	2	1
TNFSF9 WILD-TYPE	34	27	15	19	12

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S158. Gene #16: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TNFSF9 MUTATED	7	3	2
TNFSF9 WILD-TYPE	64	24	19

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S159. Gene #16: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TNFSF9 MUTATED	2	0	3	0	3	4	0
TNFSF9 WILD-TYPE	16	8	7	8	33	21	12

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S160. Gene #16: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TNFSF9 MUTATED	0	5	0	4	3	0
TNFSF9 WILD-TYPE	17	27	13	28	13	7

'SRP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S161. Gene #17: 'SRP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SRP14 MUTATED	1	6	1	1
SRP14 WILD-TYPE	18	47	29	23

'SRP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S162. Gene #17: 'SRP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SRP14 MUTATED	2	1	3	3
SRP14 WILD-TYPE	33	29	31	23

'SRP14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S163. Gene #17: 'SRP14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SRP14 MUTATED	2	2	0	1	1
SRP14 WILD-TYPE	27	16	13	8	12

'SRP14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S164. Gene #17: 'SRP14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SRP14 MUTATED	2	2	0	1	1
SRP14 WILD-TYPE	30	16	12	9	9

'SRP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S165. Gene #17: 'SRP14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SRP14 MUTATED	3	2	1	1	2
SRP14 WILD-TYPE	23	18	27	24	18

'SRP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S166. Gene #17: 'SRP14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SRP14 MUTATED	4	4	1
SRP14 WILD-TYPE	44	49	17

'SRP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S167. Gene #17: 'SRP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SRP14 MUTATED	2	3	1	1	2
SRP14 WILD-TYPE	35	28	16	20	11

'SRP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S168. Gene #17: 'SRP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SRP14 MUTATED	6	2	1
SRP14 WILD-TYPE	65	25	20

'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S169. Gene #17: 'SRP14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SRP14 MUTATED	2	1	1	1	2	2	0
SRP14 WILD-TYPE	16	7	9	7	34	23	12

'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S170. Gene #17: 'SRP14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SRP14 MUTATED	2	2	2	2	1	0
SRP14 WILD-TYPE	15	30	11	30	15	7

'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0035 (Fisher's exact test), Q value = 1

Table S171. Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SORBS2 MUTATED	8	4	2	3
SORBS2 WILD-TYPE	11	49	28	21

Figure S25. Get High-res Image Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S172. Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SORBS2 MUTATED	4	2	6	5
SORBS2 WILD-TYPE	31	28	28	21

'SORBS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S173. Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SORBS2 MUTATED	5	4	1	2	0
SORBS2 WILD-TYPE	24	14	12	7	13

'SORBS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S174. Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SORBS2 MUTATED	6	4	1	1	0
SORBS2 WILD-TYPE	26	14	11	9	10

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S175. Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SORBS2 MUTATED	3	2	4	6	1
SORBS2 WILD-TYPE	23	18	24	19	19

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S176. Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SORBS2 MUTATED	7	8	1
SORBS2 WILD-TYPE	41	45	17

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S177. Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SORBS2 MUTATED	6	2	3	3	2
SORBS2 WILD-TYPE	31	29	14	18	11

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S178. Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SORBS2 MUTATED	12	3	1
SORBS2 WILD-TYPE	59	24	20

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.986 (Fisher's exact test), Q value = 1

Table S179. Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SORBS2 MUTATED	2	1	2	1	6	3	1
SORBS2 WILD-TYPE	16	7	8	7	30	22	11

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S180. Gene #18: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SORBS2 MUTATED	3	4	1	7	1	0
SORBS2 WILD-TYPE	14	28	12	25	15	7

'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S181. Gene #19: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ERF MUTATED	2	6	4	1
ERF WILD-TYPE	17	47	26	23

'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S182. Gene #19: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ERF MUTATED	7	2	2	2
ERF WILD-TYPE	28	28	32	24

'ERF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S183. Gene #19: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ERF MUTATED	3	2	0	2	0
ERF WILD-TYPE	26	16	13	7	13

'ERF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S184. Gene #19: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ERF MUTATED	4	2	0	1	0
ERF WILD-TYPE	28	16	12	9	10

'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S185. Gene #19: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ERF MUTATED	2	0	4	5	2
ERF WILD-TYPE	24	20	24	20	18

'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S186. Gene #19: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ERF MUTATED	5	7	1
ERF WILD-TYPE	43	46	17

'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S187. Gene #19: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ERF MUTATED	5	5	2	1	0
ERF WILD-TYPE	32	26	15	20	13

'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S188. Gene #19: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ERF MUTATED	10	2	1
ERF WILD-TYPE	61	25	20

'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S189. Gene #19: 'ERF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ERF MUTATED	0	2	2	2	4	3	0
ERF WILD-TYPE	18	6	8	6	32	22	12

'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S190. Gene #19: 'ERF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ERF MUTATED	0	6	1	5	1	0
ERF WILD-TYPE	17	26	12	27	15	7

'MED9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S191. Gene #20: 'MED9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MED9 MUTATED	2	1	1	3
MED9 WILD-TYPE	17	52	29	21

'MED9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S192. Gene #20: 'MED9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MED9 MUTATED	2	2	1	2
MED9 WILD-TYPE	33	28	33	24

'MED9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S193. Gene #20: 'MED9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MED9 MUTATED	1	0	1	1	0
MED9 WILD-TYPE	28	18	12	8	13

'MED9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S194. Gene #20: 'MED9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MED9 MUTATED	3	0	0	0	0
MED9 WILD-TYPE	29	18	12	10	10

'MED9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S195. Gene #20: 'MED9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MED9 MUTATED	1	1	1	3	1
MED9 WILD-TYPE	25	19	27	22	19

'MED9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S196. Gene #20: 'MED9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MED9 MUTATED	4	1	2
MED9 WILD-TYPE	44	52	16

'MED9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S197. Gene #20: 'MED9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MED9 MUTATED	2	0	2	1	2
MED9 WILD-TYPE	35	31	15	20	11

'MED9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S198. Gene #20: 'MED9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MED9 MUTATED	3	2	2
MED9 WILD-TYPE	68	25	19

'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S199. Gene #20: 'MED9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MED9 MUTATED	2	1	1	1	0	2	0
MED9 WILD-TYPE	16	7	9	7	36	23	12

'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S200. Gene #20: 'MED9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MED9 MUTATED	2	0	0	3	2	0
MED9 WILD-TYPE	15	32	13	29	14	7

'BHLHB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S201. Gene #21: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BHLHB9 MUTATED	3	5	4	0
BHLHB9 WILD-TYPE	16	48	26	24

'BHLHB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S202. Gene #21: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BHLHB9 MUTATED	3	5	3	1
BHLHB9 WILD-TYPE	32	25	31	25

'BHLHB9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S203. Gene #21: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BHLHB9 MUTATED	0	1	2	0	0
BHLHB9 WILD-TYPE	29	17	11	9	13

'BHLHB9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S204. Gene #21: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BHLHB9 MUTATED	0	1	1	0	1
BHLHB9 WILD-TYPE	32	17	11	10	9

'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S205. Gene #21: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BHLHB9 MUTATED	3	4	3	1	1
BHLHB9 WILD-TYPE	23	16	25	24	19

'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S206. Gene #21: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BHLHB9 MUTATED	4	4	4
BHLHB9 WILD-TYPE	44	49	14

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S207. Gene #21: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BHLHB9 MUTATED	5	1	1	3	2
BHLHB9 WILD-TYPE	32	30	16	18	11

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S208. Gene #21: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BHLHB9 MUTATED	7	2	3
BHLHB9 WILD-TYPE	64	25	18

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S209. Gene #21: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BHLHB9 MUTATED	2	1	0	1	3	1	3
BHLHB9 WILD-TYPE	16	7	10	7	33	24	9

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S210. Gene #21: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BHLHB9 MUTATED	2	2	1	2	1	3
BHLHB9 WILD-TYPE	15	30	12	30	15	4

'ZNF185 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 1

Table S211. Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF185 MUTATED	0	8	2	0
ZNF185 WILD-TYPE	19	45	28	24

'ZNF185 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S212. Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF185 MUTATED	2	3	5	0
ZNF185 WILD-TYPE	33	27	29	26

'ZNF185 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S213. Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF185 MUTATED	3	3	0	0	0
ZNF185 WILD-TYPE	26	15	13	9	13

'ZNF185 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S214. Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF185 MUTATED	2	3	0	1	0
ZNF185 WILD-TYPE	30	15	12	9	10

'ZNF185 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 1

Table S215. Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF185 MUTATED	5	0	1	4	0
ZNF185 WILD-TYPE	21	20	27	21	20

Figure S26. Get High-res Image Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF185 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S216. Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF185 MUTATED	6	4	0
ZNF185 WILD-TYPE	42	49	18

'ZNF185 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 1

Table S217. Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF185 MUTATED	4	0	4	2	0
ZNF185 WILD-TYPE	33	31	13	19	13

Figure S27. Get High-res Image Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF185 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0702 (Fisher's exact test), Q value = 1

Table S218. Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF185 MUTATED	5	5	0
ZNF185 WILD-TYPE	66	22	21

'ZNF185 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S219. Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF185 MUTATED	4	0	1	0	4	1	0
ZNF185 WILD-TYPE	14	8	9	8	32	24	12

'ZNF185 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S220. Gene #22: 'ZNF185 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF185 MUTATED	2	2	1	5	0	0
ZNF185 WILD-TYPE	15	30	12	27	16	7

'IRX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S221. Gene #23: 'IRX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IRX4 MUTATED	2	3	3	2
IRX4 WILD-TYPE	17	50	27	22

'IRX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S222. Gene #23: 'IRX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IRX4 MUTATED	4	1	3	2
IRX4 WILD-TYPE	31	29	31	24

'IRX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S223. Gene #23: 'IRX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
IRX4 MUTATED	2	2	0	0	1
IRX4 WILD-TYPE	27	16	13	9	12

'IRX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S224. Gene #23: 'IRX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
IRX4 MUTATED	2	1	0	1	1
IRX4 WILD-TYPE	30	17	12	9	9

'IRX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S225. Gene #23: 'IRX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IRX4 MUTATED	4	1	2	1	2
IRX4 WILD-TYPE	22	19	26	24	18

'IRX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S226. Gene #23: 'IRX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IRX4 MUTATED	3	5	2
IRX4 WILD-TYPE	45	48	16

'IRX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S227. Gene #23: 'IRX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IRX4 MUTATED	4	1	1	3	1
IRX4 WILD-TYPE	33	30	16	18	12

'IRX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S228. Gene #23: 'IRX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IRX4 MUTATED	7	1	2
IRX4 WILD-TYPE	64	26	19

'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S229. Gene #23: 'IRX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IRX4 MUTATED	1	1	0	1	4	2	0
IRX4 WILD-TYPE	17	7	10	7	32	23	12

'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S230. Gene #23: 'IRX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IRX4 MUTATED	1	4	1	1	2	0
IRX4 WILD-TYPE	16	28	12	31	14	7

'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S231. Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZMIZ1 MUTATED	3	3	4	3
ZMIZ1 WILD-TYPE	16	50	26	21

'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S232. Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZMIZ1 MUTATED	2	2	4	5
ZMIZ1 WILD-TYPE	33	28	30	21

'ZMIZ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S233. Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZMIZ1 MUTATED	3	4	1	2	1
ZMIZ1 WILD-TYPE	26	14	12	7	12

'ZMIZ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S234. Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZMIZ1 MUTATED	4	5	0	1	1
ZMIZ1 WILD-TYPE	28	13	12	9	9

'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S235. Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZMIZ1 MUTATED	1	2	5	2	3
ZMIZ1 WILD-TYPE	25	18	23	23	17

'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 1

Table S236. Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZMIZ1 MUTATED	3	10	0
ZMIZ1 WILD-TYPE	45	43	18

Figure S28. Get High-res Image Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S237. Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZMIZ1 MUTATED	3	6	0	2	2
ZMIZ1 WILD-TYPE	34	25	17	19	11

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S238. Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZMIZ1 MUTATED	11	2	0
ZMIZ1 WILD-TYPE	60	25	21

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 1

Table S239. Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZMIZ1 MUTATED	1	2	2	3	4	1	0
ZMIZ1 WILD-TYPE	17	6	8	5	32	24	12

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S240. Gene #24: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZMIZ1 MUTATED	1	5	3	3	1	0
ZMIZ1 WILD-TYPE	16	27	10	29	15	7

'EDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S241. Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EDC4 MUTATED	4	6	5	1
EDC4 WILD-TYPE	15	47	25	23

'EDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00574 (Fisher's exact test), Q value = 1

Table S242. Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EDC4 MUTATED	9	3	0	4
EDC4 WILD-TYPE	26	27	34	22

Figure S29. Get High-res Image Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EDC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S243. Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EDC4 MUTATED	4	3	3	1	1
EDC4 WILD-TYPE	25	15	10	8	12

'EDC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S244. Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EDC4 MUTATED	7	3	1	0	1
EDC4 WILD-TYPE	25	15	11	10	9

'EDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S245. Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EDC4 MUTATED	3	1	2	6	3
EDC4 WILD-TYPE	23	19	26	19	17

'EDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S246. Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EDC4 MUTATED	7	8	0
EDC4 WILD-TYPE	41	45	18

'EDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S247. Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EDC4 MUTATED	4	4	5	2	0
EDC4 WILD-TYPE	33	27	12	19	13

'EDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S248. Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EDC4 MUTATED	10	5	0
EDC4 WILD-TYPE	61	22	21

'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S249. Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EDC4 MUTATED	4	3	1	2	2	2	1
EDC4 WILD-TYPE	14	5	9	6	34	23	11

'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S250. Gene #25: 'EDC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EDC4 MUTATED	1	3	3	7	1	0
EDC4 WILD-TYPE	16	29	10	25	15	7

'CCDC135 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S251. Gene #26: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCDC135 MUTATED	3	5	4	1
CCDC135 WILD-TYPE	16	48	26	23

'CCDC135 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S252. Gene #26: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCDC135 MUTATED	5	3	4	1
CCDC135 WILD-TYPE	30	27	30	25

'CCDC135 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S253. Gene #26: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CCDC135 MUTATED	3	0	1	2	0
CCDC135 WILD-TYPE	26	18	12	7	13

'CCDC135 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S254. Gene #26: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CCDC135 MUTATED	3	0	1	2	0
CCDC135 WILD-TYPE	29	18	11	8	10

'CCDC135 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S255. Gene #26: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCDC135 MUTATED	4	1	2	5	1
CCDC135 WILD-TYPE	22	19	26	20	19

'CCDC135 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S256. Gene #26: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCDC135 MUTATED	6	7	0
CCDC135 WILD-TYPE	42	46	18

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S257. Gene #26: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCDC135 MUTATED	3	3	3	4	0
CCDC135 WILD-TYPE	34	28	14	17	13

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S258. Gene #26: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCDC135 MUTATED	9	4	0
CCDC135 WILD-TYPE	62	23	21

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S259. Gene #26: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCDC135 MUTATED	1	1	4	1	3	1	1
CCDC135 WILD-TYPE	17	7	6	7	33	24	11

'CCDC135 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S260. Gene #26: 'CCDC135 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCDC135 MUTATED	2	3	2	5	0	0
CCDC135 WILD-TYPE	15	29	11	27	16	7

'APP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S261. Gene #27: 'APP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
APP MUTATED	4	4	3	1
APP WILD-TYPE	15	49	27	23

'APP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S262. Gene #27: 'APP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
APP MUTATED	3	1	3	5
APP WILD-TYPE	32	29	31	21

'APP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S263. Gene #27: 'APP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
APP MUTATED	3	2	1	1	2
APP WILD-TYPE	26	16	12	8	11

'APP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S264. Gene #27: 'APP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
APP MUTATED	4	2	2	0	1
APP WILD-TYPE	28	16	10	10	9

'APP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S265. Gene #27: 'APP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
APP MUTATED	2	1	3	1	4
APP WILD-TYPE	24	19	25	24	16

'APP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S266. Gene #27: 'APP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
APP MUTATED	3	7	1
APP WILD-TYPE	45	46	17

'APP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S267. Gene #27: 'APP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
APP MUTATED	4	4	0	1	2
APP WILD-TYPE	33	27	17	20	11

'APP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S268. Gene #27: 'APP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
APP MUTATED	8	1	2
APP WILD-TYPE	63	26	19

'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 1

Table S269. Gene #27: 'APP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
APP MUTATED	0	0	2	3	4	2	0
APP WILD-TYPE	18	8	8	5	32	23	12

'APP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S270. Gene #27: 'APP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
APP MUTATED	0	5	2	1	3	0
APP WILD-TYPE	17	27	11	31	13	7

'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S271. Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TMC4 MUTATED	2	10	5	3
TMC4 WILD-TYPE	17	43	25	21

'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S272. Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TMC4 MUTATED	5	4	7	4
TMC4 WILD-TYPE	30	26	27	22

'TMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S273. Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TMC4 MUTATED	1	5	1	2	2
TMC4 WILD-TYPE	28	13	12	7	11

'TMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S274. Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TMC4 MUTATED	3	5	1	0	2
TMC4 WILD-TYPE	29	13	11	10	8

'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S275. Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TMC4 MUTATED	2	3	7	5	2
TMC4 WILD-TYPE	24	17	21	20	18

'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S276. Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TMC4 MUTATED	9	10	0
TMC4 WILD-TYPE	39	43	18

'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S277. Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TMC4 MUTATED	5	7	1	4	2
TMC4 WILD-TYPE	32	24	16	17	11

'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S278. Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TMC4 MUTATED	13	5	1
TMC4 WILD-TYPE	58	22	20

'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 1

Table S279. Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TMC4 MUTATED	3	1	5	2	3	4	0
TMC4 WILD-TYPE	15	7	5	6	33	21	12

Figure S30. Get High-res Image Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S280. Gene #28: 'TMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TMC4 MUTATED	2	8	1	6	1	0
TMC4 WILD-TYPE	15	24	12	26	15	7

'PHF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S281. Gene #29: 'PHF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PHF13 MUTATED	2	2	4	1
PHF13 WILD-TYPE	17	51	26	23

'PHF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S282. Gene #29: 'PHF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PHF13 MUTATED	2	4	3	0
PHF13 WILD-TYPE	33	26	31	26

'PHF13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S283. Gene #29: 'PHF13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PHF13 MUTATED	1	1	1	1	1
PHF13 WILD-TYPE	28	17	12	8	12

'PHF13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S284. Gene #29: 'PHF13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PHF13 MUTATED	3	0	0	0	2
PHF13 WILD-TYPE	29	18	12	10	8

'PHF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S285. Gene #29: 'PHF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PHF13 MUTATED	1	4	3	1	0
PHF13 WILD-TYPE	25	16	25	24	20

'PHF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S286. Gene #29: 'PHF13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PHF13 MUTATED	3	3	3
PHF13 WILD-TYPE	45	50	15

'PHF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S287. Gene #29: 'PHF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PHF13 MUTATED	3	1	0	2	3
PHF13 WILD-TYPE	34	30	17	19	10

'PHF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S288. Gene #29: 'PHF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PHF13 MUTATED	5	2	2
PHF13 WILD-TYPE	66	25	19

'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S289. Gene #29: 'PHF13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PHF13 MUTATED	1	1	0	0	2	3	2
PHF13 WILD-TYPE	17	7	10	8	34	22	10

'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S290. Gene #29: 'PHF13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PHF13 MUTATED	0	4	0	2	1	2
PHF13 WILD-TYPE	17	28	13	30	15	5

'B4GALT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S291. Gene #30: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
B4GALT2 MUTATED	1	5	1	3
B4GALT2 WILD-TYPE	18	48	29	21

'B4GALT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S292. Gene #30: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
B4GALT2 MUTATED	3	2	4	1
B4GALT2 WILD-TYPE	32	28	30	25

'B4GALT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S293. Gene #30: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
B4GALT2 MUTATED	2	1	1	0	1
B4GALT2 WILD-TYPE	27	17	12	9	12

'B4GALT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S294. Gene #30: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
B4GALT2 MUTATED	3	1	0	0	1
B4GALT2 WILD-TYPE	29	17	12	10	9

'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S295. Gene #30: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
B4GALT2 MUTATED	3	0	3	2	2
B4GALT2 WILD-TYPE	23	20	25	23	18

'B4GALT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S296. Gene #30: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
B4GALT2 MUTATED	5	5	0
B4GALT2 WILD-TYPE	43	48	18

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S297. Gene #30: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
B4GALT2 MUTATED	3	2	2	3	0
B4GALT2 WILD-TYPE	34	29	15	18	13

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S298. Gene #30: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
B4GALT2 MUTATED	8	2	0
B4GALT2 WILD-TYPE	63	25	21

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S299. Gene #30: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
B4GALT2 MUTATED	1	1	2	1	3	1	0
B4GALT2 WILD-TYPE	17	7	8	7	33	24	12

'B4GALT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S300. Gene #30: 'B4GALT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
B4GALT2 MUTATED	2	3	2	2	0	0
B4GALT2 WILD-TYPE	15	29	11	30	16	7

'GAGE2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S301. Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GAGE2A MUTATED	0	3	1	2
GAGE2A WILD-TYPE	19	50	29	22

'GAGE2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S302. Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GAGE2A MUTATED	1	0	2	3
GAGE2A WILD-TYPE	34	30	32	23

'GAGE2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S303. Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GAGE2A MUTATED	2	1	1	0	0
GAGE2A WILD-TYPE	27	17	12	9	13

'GAGE2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S304. Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GAGE2A MUTATED	1	1	1	1	0
GAGE2A WILD-TYPE	31	17	11	9	10

'GAGE2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S305. Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GAGE2A MUTATED	1	2	1	0	2
GAGE2A WILD-TYPE	25	18	27	25	18

'GAGE2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S306. Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GAGE2A MUTATED	1	3	2
GAGE2A WILD-TYPE	47	50	16

'GAGE2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 1

Table S307. Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GAGE2A MUTATED	0	1	1	2	2
GAGE2A WILD-TYPE	37	30	16	19	11

'GAGE2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S308. Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GAGE2A MUTATED	3	1	2
GAGE2A WILD-TYPE	68	26	19

'GAGE2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S309. Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GAGE2A MUTATED	1	0	0	2	2	1	0
GAGE2A WILD-TYPE	17	8	10	6	34	24	12

'GAGE2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 1

Table S310. Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GAGE2A MUTATED	0	0	3	1	2	0
GAGE2A WILD-TYPE	17	32	10	31	14	7

Figure S31. Get High-res Image Gene #31: 'GAGE2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'YIPF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S311. Gene #32: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
YIPF2 MUTATED	3	5	2	1
YIPF2 WILD-TYPE	16	48	28	23

'YIPF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S312. Gene #32: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
YIPF2 MUTATED	4	2	4	1
YIPF2 WILD-TYPE	31	28	30	25

'YIPF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S313. Gene #32: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
YIPF2 MUTATED	3	2	1	2	0
YIPF2 WILD-TYPE	26	16	12	7	13

'YIPF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S314. Gene #32: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
YIPF2 MUTATED	4	2	1	1	0
YIPF2 WILD-TYPE	28	16	11	9	10

'YIPF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S315. Gene #32: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
YIPF2 MUTATED	1	1	3	4	2
YIPF2 WILD-TYPE	25	19	25	21	18

'YIPF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S316. Gene #32: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
YIPF2 MUTATED	6	5	0
YIPF2 WILD-TYPE	42	48	18

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S317. Gene #32: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
YIPF2 MUTATED	3	4	2	1	1
YIPF2 WILD-TYPE	34	27	15	20	12

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S318. Gene #32: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
YIPF2 MUTATED	7	3	1
YIPF2 WILD-TYPE	64	24	20

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S319. Gene #32: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
YIPF2 MUTATED	1	1	1	2	2	3	1
YIPF2 WILD-TYPE	17	7	9	6	34	22	11

'YIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S320. Gene #32: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
YIPF2 MUTATED	1	3	2	4	1	0
YIPF2 WILD-TYPE	16	29	11	28	15	7

'MED15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S321. Gene #33: 'MED15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MED15 MUTATED	2	4	3	3
MED15 WILD-TYPE	17	49	27	21

'MED15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S322. Gene #33: 'MED15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MED15 MUTATED	3	2	3	4
MED15 WILD-TYPE	32	28	31	22

'MED15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S323. Gene #33: 'MED15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MED15 MUTATED	3	0	2	2	0
MED15 WILD-TYPE	26	18	11	7	13

'MED15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S324. Gene #33: 'MED15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MED15 MUTATED	4	0	0	1	2
MED15 WILD-TYPE	28	18	12	9	8

'MED15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S325. Gene #33: 'MED15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MED15 MUTATED	1	3	2	3	3
MED15 WILD-TYPE	25	17	26	22	17

'MED15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S326. Gene #33: 'MED15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MED15 MUTATED	5	6	1
MED15 WILD-TYPE	43	47	17

'MED15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S327. Gene #33: 'MED15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MED15 MUTATED	4	3	1	2	2
MED15 WILD-TYPE	33	28	16	19	11

'MED15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S328. Gene #33: 'MED15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MED15 MUTATED	7	2	3
MED15 WILD-TYPE	64	25	18

'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S329. Gene #33: 'MED15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MED15 MUTATED	0	1	1	1	4	5	0
MED15 WILD-TYPE	18	7	9	7	32	20	12

'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S330. Gene #33: 'MED15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MED15 MUTATED	2	2	2	3	3	0
MED15 WILD-TYPE	15	30	11	29	13	7

'MBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S331. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MBD3 MUTATED	0	3	3	3
MBD3 WILD-TYPE	19	50	27	21

'MBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S332. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MBD3 MUTATED	4	2	1	2
MBD3 WILD-TYPE	31	28	33	24

'MBD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 1

Table S333. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MBD3 MUTATED	1	0	0	2	2
MBD3 WILD-TYPE	28	18	13	7	11

'MBD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S334. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MBD3 MUTATED	4	0	0	0	1
MBD3 WILD-TYPE	28	18	12	10	9

'MBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S335. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MBD3 MUTATED	1	2	3	2	1
MBD3 WILD-TYPE	25	18	25	23	19

'MBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S336. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MBD3 MUTATED	3	4	2
MBD3 WILD-TYPE	45	49	16

'MBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S337. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MBD3 MUTATED	4	1	1	1	2
MBD3 WILD-TYPE	33	30	16	20	11

'MBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S338. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MBD3 MUTATED	6	2	1
MBD3 WILD-TYPE	65	25	20

'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S339. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MBD3 MUTATED	1	0	2	0	4	0	2
MBD3 WILD-TYPE	17	8	8	8	32	25	10

'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S340. Gene #34: 'MBD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MBD3 MUTATED	2	4	0	3	0	0
MBD3 WILD-TYPE	15	28	13	29	16	7

'WWTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S341. Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
WWTR1 MUTATED	0	5	5	2
WWTR1 WILD-TYPE	19	48	25	22

'WWTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S342. Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
WWTR1 MUTATED	4	0	4	4
WWTR1 WILD-TYPE	31	30	30	22

'WWTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 1

Table S343. Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
WWTR1 MUTATED	1	1	3	2	4
WWTR1 WILD-TYPE	28	17	10	7	9

Figure S32. Get High-res Image Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WWTR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0456 (Fisher's exact test), Q value = 1

Table S344. Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
WWTR1 MUTATED	4	0	2	1	4
WWTR1 WILD-TYPE	28	18	10	9	6

Figure S33. Get High-res Image Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WWTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S345. Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
WWTR1 MUTATED	2	0	4	2	4
WWTR1 WILD-TYPE	24	20	24	23	16

'WWTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S346. Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
WWTR1 MUTATED	7	4	1
WWTR1 WILD-TYPE	41	49	17

'WWTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 1

Table S347. Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
WWTR1 MUTATED	1	6	0	5	0
WWTR1 WILD-TYPE	36	25	17	16	13

Figure S34. Get High-res Image Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WWTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S348. Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
WWTR1 MUTATED	10	1	1
WWTR1 WILD-TYPE	61	26	20

'WWTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S349. Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
WWTR1 MUTATED	2	0	2	1	2	3	1
WWTR1 WILD-TYPE	16	8	8	7	34	22	11

'WWTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S350. Gene #35: 'WWTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
WWTR1 MUTATED	1	4	1	3	2	0
WWTR1 WILD-TYPE	16	28	12	29	14	7

'FAM63B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S351. Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FAM63B MUTATED	2	3	4	2
FAM63B WILD-TYPE	17	50	26	22

'FAM63B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S352. Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FAM63B MUTATED	3	4	1	3
FAM63B WILD-TYPE	32	26	33	23

'FAM63B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S353. Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FAM63B MUTATED	3	1	1	1	0
FAM63B WILD-TYPE	26	17	12	8	13

'FAM63B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S354. Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FAM63B MUTATED	4	1	0	0	1
FAM63B WILD-TYPE	28	17	12	10	9

'FAM63B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0531 (Fisher's exact test), Q value = 1

Table S355. Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FAM63B MUTATED	1	2	0	5	3
FAM63B WILD-TYPE	25	18	28	20	17

'FAM63B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S356. Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FAM63B MUTATED	6	3	2
FAM63B WILD-TYPE	42	50	16

'FAM63B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S357. Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FAM63B MUTATED	2	2	4	1	2
FAM63B WILD-TYPE	35	29	13	20	11

'FAM63B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0373 (Fisher's exact test), Q value = 1

Table S358. Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FAM63B MUTATED	4	6	1
FAM63B WILD-TYPE	67	21	20

Figure S35. Get High-res Image Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM63B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S359. Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FAM63B MUTATED	3	0	1	1	1	3	2
FAM63B WILD-TYPE	15	8	9	7	35	22	10

'FAM63B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S360. Gene #36: 'FAM63B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FAM63B MUTATED	0	2	0	5	3	1
FAM63B WILD-TYPE	17	30	13	27	13	6

'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S361. Gene #37: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C14ORF43 MUTATED	2	6	4	1
C14ORF43 WILD-TYPE	17	47	26	23

'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S362. Gene #37: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C14ORF43 MUTATED	5	3	3	2
C14ORF43 WILD-TYPE	30	27	31	24

'C14ORF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S363. Gene #37: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
C14ORF43 MUTATED	6	1	0	1	2
C14ORF43 WILD-TYPE	23	17	13	8	11

'C14ORF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S364. Gene #37: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
C14ORF43 MUTATED	6	2	1	1	0
C14ORF43 WILD-TYPE	26	16	11	9	10

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S365. Gene #37: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C14ORF43 MUTATED	3	2	2	4	2
C14ORF43 WILD-TYPE	23	18	26	21	18

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S366. Gene #37: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C14ORF43 MUTATED	7	6	0
C14ORF43 WILD-TYPE	41	47	18

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S367. Gene #37: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C14ORF43 MUTATED	6	2	2	3	0
C14ORF43 WILD-TYPE	31	29	15	18	13

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S368. Gene #37: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C14ORF43 MUTATED	10	3	0
C14ORF43 WILD-TYPE	61	24	21

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S369. Gene #37: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C14ORF43 MUTATED	3	0	1	2	4	1	1
C14ORF43 WILD-TYPE	15	8	9	6	32	24	11

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S370. Gene #37: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C14ORF43 MUTATED	2	4	3	3	0	0
C14ORF43 WILD-TYPE	15	28	10	29	16	7

'ERCC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S371. Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ERCC3 MUTATED	1	1	6	1
ERCC3 WILD-TYPE	18	52	24	23

Figure S36. Get High-res Image Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERCC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S372. Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ERCC3 MUTATED	2	3	1	3
ERCC3 WILD-TYPE	33	27	33	23

'ERCC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S373. Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ERCC3 MUTATED	1	2	0	1	2
ERCC3 WILD-TYPE	28	16	13	8	11

'ERCC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S374. Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ERCC3 MUTATED	3	2	0	0	1
ERCC3 WILD-TYPE	29	16	12	10	9

'ERCC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 1

Table S375. Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ERCC3 MUTATED	0	1	1	5	2
ERCC3 WILD-TYPE	26	19	27	20	18

'ERCC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S376. Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ERCC3 MUTATED	6	2	1
ERCC3 WILD-TYPE	42	51	17

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S377. Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ERCC3 MUTATED	1	3	3	2	0
ERCC3 WILD-TYPE	36	28	14	19	13

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S378. Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ERCC3 MUTATED	5	4	0
ERCC3 WILD-TYPE	66	23	21

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S379. Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ERCC3 MUTATED	2	1	2	1	0	2	1
ERCC3 WILD-TYPE	16	7	8	7	36	23	11

'ERCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S380. Gene #38: 'ERCC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ERCC3 MUTATED	2	1	0	5	1	0
ERCC3 WILD-TYPE	15	31	13	27	15	7

'MYH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S381. Gene #39: 'MYH10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MYH10 MUTATED	2	8	4	0
MYH10 WILD-TYPE	17	45	26	24

'MYH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S382. Gene #39: 'MYH10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MYH10 MUTATED	5	4	2	3
MYH10 WILD-TYPE	30	26	32	23

'MYH10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S383. Gene #39: 'MYH10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MYH10 MUTATED	1	1	1	2	2
MYH10 WILD-TYPE	28	17	12	7	11

'MYH10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S384. Gene #39: 'MYH10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MYH10 MUTATED	2	1	1	1	2
MYH10 WILD-TYPE	30	17	11	9	8

'MYH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S385. Gene #39: 'MYH10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MYH10 MUTATED	1	3	3	4	3
MYH10 WILD-TYPE	25	17	25	21	17

'MYH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S386. Gene #39: 'MYH10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MYH10 MUTATED	9	3	2
MYH10 WILD-TYPE	39	50	16

'MYH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S387. Gene #39: 'MYH10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MYH10 MUTATED	3	4	2	4	1
MYH10 WILD-TYPE	34	27	15	17	12

'MYH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S388. Gene #39: 'MYH10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MYH10 MUTATED	8	3	3
MYH10 WILD-TYPE	63	24	18

'MYH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S389. Gene #39: 'MYH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MYH10 MUTATED	2	1	2	1	3	4	1
MYH10 WILD-TYPE	16	7	8	7	33	21	11

'MYH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S390. Gene #39: 'MYH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MYH10 MUTATED	2	3	1	5	2	1
MYH10 WILD-TYPE	15	29	12	27	14	6

'ZMYM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S391. Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZMYM5 MUTATED	2	8	1	2
ZMYM5 WILD-TYPE	17	45	29	22

'ZMYM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00916 (Fisher's exact test), Q value = 1

Table S392. Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZMYM5 MUTATED	2	1	9	1
ZMYM5 WILD-TYPE	33	29	25	25

Figure S37. Get High-res Image Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZMYM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S393. Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZMYM5 MUTATED	2	2	1	2	2
ZMYM5 WILD-TYPE	27	16	12	7	11

'ZMYM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S394. Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZMYM5 MUTATED	2	2	2	2	1
ZMYM5 WILD-TYPE	30	16	10	8	9

'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S395. Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZMYM5 MUTATED	4	3	5	1	0
ZMYM5 WILD-TYPE	22	17	23	24	20

'ZMYM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S396. Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZMYM5 MUTATED	5	7	1
ZMYM5 WILD-TYPE	43	46	17

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S397. Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZMYM5 MUTATED	7	1	1	4	0
ZMYM5 WILD-TYPE	30	30	16	17	13

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S398. Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZMYM5 MUTATED	11	1	1
ZMYM5 WILD-TYPE	60	26	20

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S399. Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZMYM5 MUTATED	1	1	2	0	6	2	1
ZMYM5 WILD-TYPE	17	7	8	8	30	23	11

'ZMYM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.036 (Fisher's exact test), Q value = 1

Table S400. Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZMYM5 MUTATED	0	8	2	2	0	1
ZMYM5 WILD-TYPE	17	24	11	30	16	6

Figure S38. Get High-res Image Gene #40: 'ZMYM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDCA8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S401. Gene #41: 'CDCA8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CDCA8 MUTATED	1	5	1	2
CDCA8 WILD-TYPE	18	48	29	22

'CDCA8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S402. Gene #41: 'CDCA8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CDCA8 MUTATED	2	1	5	1
CDCA8 WILD-TYPE	33	29	29	25

'CDCA8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S403. Gene #41: 'CDCA8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CDCA8 MUTATED	2	1	0	2	1
CDCA8 WILD-TYPE	27	17	13	7	12

'CDCA8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S404. Gene #41: 'CDCA8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CDCA8 MUTATED	2	1	1	2	0
CDCA8 WILD-TYPE	30	17	11	8	10

'CDCA8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S405. Gene #41: 'CDCA8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CDCA8 MUTATED	1	1	3	3	1
CDCA8 WILD-TYPE	25	19	25	22	19

'CDCA8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S406. Gene #41: 'CDCA8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CDCA8 MUTATED	4	5	0
CDCA8 WILD-TYPE	44	48	18

'CDCA8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S407. Gene #41: 'CDCA8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CDCA8 MUTATED	3	2	2	2	0
CDCA8 WILD-TYPE	34	29	15	19	13

'CDCA8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S408. Gene #41: 'CDCA8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CDCA8 MUTATED	8	1	0
CDCA8 WILD-TYPE	63	26	21

'CDCA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S409. Gene #41: 'CDCA8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CDCA8 MUTATED	0	1	1	0	3	4	0
CDCA8 WILD-TYPE	18	7	9	8	33	21	12

'CDCA8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S410. Gene #41: 'CDCA8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CDCA8 MUTATED	1	3	2	3	0	0
CDCA8 WILD-TYPE	16	29	11	29	16	7

'PAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S411. Gene #42: 'PAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PAK1 MUTATED	3	5	2	1
PAK1 WILD-TYPE	16	48	28	23

'PAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S412. Gene #42: 'PAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PAK1 MUTATED	2	4	5	0
PAK1 WILD-TYPE	33	26	29	26

'PAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S413. Gene #42: 'PAK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PAK1 MUTATED	1	2	1	0	0
PAK1 WILD-TYPE	28	16	12	9	13

'PAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S414. Gene #42: 'PAK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PAK1 MUTATED	1	2	1	0	0
PAK1 WILD-TYPE	31	16	11	10	10

'PAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S415. Gene #42: 'PAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PAK1 MUTATED	3	2	4	2	0
PAK1 WILD-TYPE	23	18	24	23	20

'PAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S416. Gene #42: 'PAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PAK1 MUTATED	2	7	2
PAK1 WILD-TYPE	46	46	16

'PAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S417. Gene #42: 'PAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PAK1 MUTATED	2	3	2	4	0
PAK1 WILD-TYPE	35	28	15	17	13

'PAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S418. Gene #42: 'PAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PAK1 MUTATED	7	2	2
PAK1 WILD-TYPE	64	25	19

'PAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S419. Gene #42: 'PAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PAK1 MUTATED	1	2	1	0	2	2	3
PAK1 WILD-TYPE	17	6	9	8	34	23	9

'PAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S420. Gene #42: 'PAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PAK1 MUTATED	2	4	1	2	0	2
PAK1 WILD-TYPE	15	28	12	30	16	5

'WRN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S421. Gene #43: 'WRN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
WRN MUTATED	3	4	3	5
WRN WILD-TYPE	16	49	27	19

'WRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S422. Gene #43: 'WRN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
WRN MUTATED	6	3	5	1
WRN WILD-TYPE	29	27	29	25

'WRN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S423. Gene #43: 'WRN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
WRN MUTATED	5	2	2	1	0
WRN WILD-TYPE	24	16	11	8	13

'WRN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S424. Gene #43: 'WRN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
WRN MUTATED	5	2	2	1	0
WRN WILD-TYPE	27	16	10	9	10

'WRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S425. Gene #43: 'WRN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
WRN MUTATED	4	3	5	2	1
WRN WILD-TYPE	22	17	23	23	19

'WRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S426. Gene #43: 'WRN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
WRN MUTATED	5	8	2
WRN WILD-TYPE	43	45	16

'WRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S427. Gene #43: 'WRN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
WRN MUTATED	6	4	1	3	1
WRN WILD-TYPE	31	27	16	18	12

'WRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S428. Gene #43: 'WRN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
WRN MUTATED	10	3	2
WRN WILD-TYPE	61	24	19

'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S429. Gene #43: 'WRN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
WRN MUTATED	4	2	0	0	4	3	2
WRN WILD-TYPE	14	6	10	8	32	22	10

'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S430. Gene #43: 'WRN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
WRN MUTATED	2	6	1	3	1	2
WRN WILD-TYPE	15	26	12	29	15	5

'CLOCK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S431. Gene #44: 'CLOCK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CLOCK MUTATED	0	4	5	3
CLOCK WILD-TYPE	19	49	25	21

'CLOCK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S432. Gene #44: 'CLOCK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CLOCK MUTATED	4	2	4	2
CLOCK WILD-TYPE	31	28	30	24

'CLOCK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S433. Gene #44: 'CLOCK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CLOCK MUTATED	3	2	0	1	0
CLOCK WILD-TYPE	26	16	13	8	13

'CLOCK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S434. Gene #44: 'CLOCK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CLOCK MUTATED	3	2	0	1	0
CLOCK WILD-TYPE	29	16	12	9	10

'CLOCK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S435. Gene #44: 'CLOCK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CLOCK MUTATED	4	2	2	2	1
CLOCK WILD-TYPE	22	18	26	23	19

'CLOCK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S436. Gene #44: 'CLOCK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CLOCK MUTATED	5	4	2
CLOCK WILD-TYPE	43	49	16

'CLOCK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S437. Gene #44: 'CLOCK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CLOCK MUTATED	3	2	1	5	0
CLOCK WILD-TYPE	34	29	16	16	13

'CLOCK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S438. Gene #44: 'CLOCK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CLOCK MUTATED	6	3	2
CLOCK WILD-TYPE	65	24	19

'CLOCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S439. Gene #44: 'CLOCK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CLOCK MUTATED	1	0	2	0	3	2	2
CLOCK WILD-TYPE	17	8	8	8	33	23	10

'CLOCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S440. Gene #44: 'CLOCK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CLOCK MUTATED	0	3	1	3	1	2
CLOCK WILD-TYPE	17	29	12	29	15	5

'TMEM175 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S441. Gene #45: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TMEM175 MUTATED	2	5	3	3
TMEM175 WILD-TYPE	17	48	27	21

'TMEM175 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S442. Gene #45: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TMEM175 MUTATED	4	2	4	3
TMEM175 WILD-TYPE	31	28	30	23

'TMEM175 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S443. Gene #45: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TMEM175 MUTATED	3	1	1	2	1
TMEM175 WILD-TYPE	26	17	12	7	12

'TMEM175 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S444. Gene #45: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TMEM175 MUTATED	3	1	1	2	1
TMEM175 WILD-TYPE	29	17	11	8	9

'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S445. Gene #45: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TMEM175 MUTATED	1	1	4	4	3
TMEM175 WILD-TYPE	25	19	24	21	17

'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S446. Gene #45: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TMEM175 MUTATED	5	7	1
TMEM175 WILD-TYPE	43	46	17

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S447. Gene #45: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TMEM175 MUTATED	2	4	1	5	1
TMEM175 WILD-TYPE	35	27	16	16	12

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S448. Gene #45: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TMEM175 MUTATED	11	1	1
TMEM175 WILD-TYPE	60	26	20

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S449. Gene #45: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TMEM175 MUTATED	1	2	1	1	3	4	0
TMEM175 WILD-TYPE	17	6	9	7	33	21	12

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S450. Gene #45: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TMEM175 MUTATED	2	2	4	3	1	0
TMEM175 WILD-TYPE	15	30	9	29	15	7

'THBS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S451. Gene #46: 'THBS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
THBS4 MUTATED	2	6	3	5
THBS4 WILD-TYPE	17	47	27	19

'THBS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S452. Gene #46: 'THBS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
THBS4 MUTATED	6	2	3	5
THBS4 WILD-TYPE	29	28	31	21

'THBS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 1

Table S453. Gene #46: 'THBS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
THBS4 MUTATED	7	4	0	2	0
THBS4 WILD-TYPE	22	14	13	7	13

'THBS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S454. Gene #46: 'THBS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
THBS4 MUTATED	7	3	0	2	1
THBS4 WILD-TYPE	25	15	12	8	9

'THBS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S455. Gene #46: 'THBS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
THBS4 MUTATED	5	2	1	4	4
THBS4 WILD-TYPE	21	18	27	21	16

'THBS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S456. Gene #46: 'THBS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
THBS4 MUTATED	8	7	1
THBS4 WILD-TYPE	40	46	17

'THBS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S457. Gene #46: 'THBS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
THBS4 MUTATED	3	6	2	4	1
THBS4 WILD-TYPE	34	25	15	17	12

'THBS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S458. Gene #46: 'THBS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
THBS4 MUTATED	11	3	2
THBS4 WILD-TYPE	60	24	19

'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S459. Gene #46: 'THBS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
THBS4 MUTATED	4	1	2	3	4	2	0
THBS4 WILD-TYPE	14	7	8	5	32	23	12

'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S460. Gene #46: 'THBS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
THBS4 MUTATED	1	3	4	6	2	0
THBS4 WILD-TYPE	16	29	9	26	14	7

'TMED10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S461. Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TMED10 MUTATED	2	2	2	2
TMED10 WILD-TYPE	17	51	28	22

'TMED10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S462. Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TMED10 MUTATED	1	4	3	0
TMED10 WILD-TYPE	34	26	31	26

'TMED10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00727 (Fisher's exact test), Q value = 1

Table S463. Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TMED10 MUTATED	0	0	3	1	0
TMED10 WILD-TYPE	29	18	10	8	13

Figure S39. Get High-res Image Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TMED10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S464. Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TMED10 MUTATED	2	0	1	0	1
TMED10 WILD-TYPE	30	18	11	10	9

'TMED10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.092 (Fisher's exact test), Q value = 1

Table S465. Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TMED10 MUTATED	0	1	3	4	0
TMED10 WILD-TYPE	26	19	25	21	20

'TMED10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S466. Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TMED10 MUTATED	5	2	1
TMED10 WILD-TYPE	43	51	17

'TMED10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S467. Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TMED10 MUTATED	1	1	3	2	1
TMED10 WILD-TYPE	36	30	14	19	12

'TMED10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S468. Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TMED10 MUTATED	4	3	1
TMED10 WILD-TYPE	67	24	20

'TMED10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S469. Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TMED10 MUTATED	1	0	1	0	3	3	0
TMED10 WILD-TYPE	17	8	9	8	33	22	12

'TMED10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S470. Gene #47: 'TMED10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TMED10 MUTATED	0	2	0	5	1	0
TMED10 WILD-TYPE	17	30	13	27	15	7

'NFIL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S471. Gene #48: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NFIL3 MUTATED	2	3	4	1
NFIL3 WILD-TYPE	17	50	26	23

'NFIL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S472. Gene #48: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NFIL3 MUTATED	3	1	3	3
NFIL3 WILD-TYPE	32	29	31	23

'NFIL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S473. Gene #48: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NFIL3 MUTATED	4	1	0	1	2
NFIL3 WILD-TYPE	25	17	13	8	11

'NFIL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S474. Gene #48: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NFIL3 MUTATED	6	1	0	0	1
NFIL3 WILD-TYPE	26	17	12	10	9

'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S475. Gene #48: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NFIL3 MUTATED	2	2	1	1	4
NFIL3 WILD-TYPE	24	18	27	24	16

'NFIL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S476. Gene #48: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NFIL3 MUTATED	2	5	3
NFIL3 WILD-TYPE	46	48	15

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S477. Gene #48: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NFIL3 MUTATED	4	5	0	1	0
NFIL3 WILD-TYPE	33	26	17	20	13

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S478. Gene #48: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NFIL3 MUTATED	8	0	2
NFIL3 WILD-TYPE	63	27	19

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S479. Gene #48: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NFIL3 MUTATED	1	0	1	1	2	4	1
NFIL3 WILD-TYPE	17	8	9	7	34	21	11

'NFIL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S480. Gene #48: 'NFIL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NFIL3 MUTATED	2	4	1	1	2	0
NFIL3 WILD-TYPE	15	28	12	31	14	7

'RGPD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S481. Gene #49: 'RGPD5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RGPD5 MUTATED	2	4	0	0
RGPD5 WILD-TYPE	17	49	30	24

'RGPD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S482. Gene #49: 'RGPD5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RGPD5 MUTATED	1	1	3	1
RGPD5 WILD-TYPE	34	29	31	25

'RGPD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S483. Gene #49: 'RGPD5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RGPD5 MUTATED	0	2	1	0	1
RGPD5 WILD-TYPE	29	16	12	9	12

'RGPD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0986 (Fisher's exact test), Q value = 1

Table S484. Gene #49: 'RGPD5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RGPD5 MUTATED	0	1	2	0	1
RGPD5 WILD-TYPE	32	17	10	10	9

'RGPD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S485. Gene #49: 'RGPD5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RGPD5 MUTATED	2	0	1	2	1
RGPD5 WILD-TYPE	24	20	27	23	19

'RGPD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S486. Gene #49: 'RGPD5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RGPD5 MUTATED	4	2	0
RGPD5 WILD-TYPE	44	51	18

'RGPD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S487. Gene #49: 'RGPD5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RGPD5 MUTATED	4	1	1	0	0
RGPD5 WILD-TYPE	33	30	16	21	13

'RGPD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S488. Gene #49: 'RGPD5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RGPD5 MUTATED	4	1	1
RGPD5 WILD-TYPE	67	26	20

'RGPD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S489. Gene #49: 'RGPD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RGPD5 MUTATED	0	0	1	0	4	1	0
RGPD5 WILD-TYPE	18	8	9	8	32	24	12

'RGPD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S490. Gene #49: 'RGPD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RGPD5 MUTATED	0	2	0	3	1	0
RGPD5 WILD-TYPE	17	30	13	29	15	7

'EMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S491. Gene #50: 'EMG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EMG1 MUTATED	1	3	4	0
EMG1 WILD-TYPE	18	50	26	24

'EMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0965 (Fisher's exact test), Q value = 1

Table S492. Gene #50: 'EMG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EMG1 MUTATED	4	1	0	3
EMG1 WILD-TYPE	31	29	34	23

'EMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S493. Gene #50: 'EMG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EMG1 MUTATED	1	2	1	2	2
EMG1 WILD-TYPE	28	16	12	7	11

'EMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S494. Gene #50: 'EMG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EMG1 MUTATED	3	1	2	2	0
EMG1 WILD-TYPE	29	17	10	8	10

'EMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 1

Table S495. Gene #50: 'EMG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EMG1 MUTATED	3	0	0	1	3
EMG1 WILD-TYPE	23	20	28	24	17

'EMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S496. Gene #50: 'EMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EMG1 MUTATED	2	4	1
EMG1 WILD-TYPE	46	49	17

'EMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S497. Gene #50: 'EMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EMG1 MUTATED	3	3	0	1	0
EMG1 WILD-TYPE	34	28	17	20	13

'EMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S498. Gene #50: 'EMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EMG1 MUTATED	5	2	0
EMG1 WILD-TYPE	66	25	21

'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S499. Gene #50: 'EMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EMG1 MUTATED	1	1	0	2	2	0	1
EMG1 WILD-TYPE	17	7	10	6	34	25	11

'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S500. Gene #50: 'EMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EMG1 MUTATED	1	2	2	2	0	0
EMG1 WILD-TYPE	16	30	11	30	16	7

'MED12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 1

Table S501. Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MED12 MUTATED	2	2	7	2
MED12 WILD-TYPE	17	51	23	22

Figure S40. Get High-res Image Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MED12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S502. Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MED12 MUTATED	3	2	4	4
MED12 WILD-TYPE	32	28	30	22

'MED12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S503. Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MED12 MUTATED	2	4	0	1	2
MED12 WILD-TYPE	27	14	13	8	11

'MED12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S504. Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MED12 MUTATED	5	3	1	0	0
MED12 WILD-TYPE	27	15	11	10	10

'MED12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S505. Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MED12 MUTATED	5	0	1	4	3
MED12 WILD-TYPE	21	20	27	21	17

'MED12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S506. Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MED12 MUTATED	7	4	2
MED12 WILD-TYPE	41	49	16

'MED12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S507. Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MED12 MUTATED	5	3	2	2	1
MED12 WILD-TYPE	32	28	15	19	12

'MED12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S508. Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MED12 MUTATED	8	4	1
MED12 WILD-TYPE	63	23	20

'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S509. Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MED12 MUTATED	2	1	2	1	5	1	1
MED12 WILD-TYPE	16	7	8	7	31	24	11

'MED12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S510. Gene #51: 'MED12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MED12 MUTATED	2	5	0	4	2	0
MED12 WILD-TYPE	15	27	13	28	14	7

'SYT15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S511. Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SYT15 MUTATED	2	3	4	2
SYT15 WILD-TYPE	17	50	26	22

'SYT15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S512. Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SYT15 MUTATED	5	2	3	1
SYT15 WILD-TYPE	30	28	31	25

'SYT15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S513. Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SYT15 MUTATED	2	1	2	1	1
SYT15 WILD-TYPE	27	17	11	8	12

'SYT15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S514. Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SYT15 MUTATED	2	1	3	1	0
SYT15 WILD-TYPE	30	17	9	9	10

'SYT15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S515. Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SYT15 MUTATED	3	1	1	4	2
SYT15 WILD-TYPE	23	19	27	21	18

'SYT15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S516. Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SYT15 MUTATED	6	5	0
SYT15 WILD-TYPE	42	48	18

'SYT15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S517. Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SYT15 MUTATED	3	3	2	3	0
SYT15 WILD-TYPE	34	28	15	18	13

'SYT15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S518. Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SYT15 MUTATED	8	3	0
SYT15 WILD-TYPE	63	24	21

'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S519. Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SYT15 MUTATED	1	0	2	0	3	4	0
SYT15 WILD-TYPE	17	8	8	8	33	21	12

'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0322 (Fisher's exact test), Q value = 1

Table S520. Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SYT15 MUTATED	0	1	3	6	0	0
SYT15 WILD-TYPE	17	31	10	26	16	7

Figure S41. Get High-res Image Gene #52: 'SYT15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OTUD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S521. Gene #53: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OTUD4 MUTATED	1	10	5	2
OTUD4 WILD-TYPE	18	43	25	22

'OTUD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S522. Gene #53: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OTUD4 MUTATED	3	2	9	4
OTUD4 WILD-TYPE	32	28	25	22

'OTUD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S523. Gene #53: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OTUD4 MUTATED	7	3	2	1	3
OTUD4 WILD-TYPE	22	15	11	8	10

'OTUD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S524. Gene #53: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OTUD4 MUTATED	7	3	5	1	0
OTUD4 WILD-TYPE	25	15	7	9	10

'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S525. Gene #53: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OTUD4 MUTATED	4	4	7	2	1
OTUD4 WILD-TYPE	22	16	21	23	19

'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S526. Gene #53: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OTUD4 MUTATED	6	8	4
OTUD4 WILD-TYPE	42	45	14

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S527. Gene #53: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OTUD4 MUTATED	4	5	1	5	3
OTUD4 WILD-TYPE	33	26	16	16	10

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S528. Gene #53: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OTUD4 MUTATED	12	1	5
OTUD4 WILD-TYPE	59	26	16

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S529. Gene #53: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OTUD4 MUTATED	1	0	2	1	7	5	2
OTUD4 WILD-TYPE	17	8	8	7	29	20	10

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S530. Gene #53: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OTUD4 MUTATED	1	6	3	3	4	1
OTUD4 WILD-TYPE	16	26	10	29	12	6

'KIAA1949 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S531. Gene #54: 'KIAA1949 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KIAA1949 MUTATED	3	4	2	1
KIAA1949 WILD-TYPE	16	49	28	23

'KIAA1949 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S532. Gene #54: 'KIAA1949 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KIAA1949 MUTATED	2	2	4	2
KIAA1949 WILD-TYPE	33	28	30	24

'KIAA1949 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S533. Gene #54: 'KIAA1949 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KIAA1949 MUTATED	2	3	1	2	0
KIAA1949 WILD-TYPE	27	15	12	7	13

'KIAA1949 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S534. Gene #54: 'KIAA1949 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KIAA1949 MUTATED	3	3	1	1	0
KIAA1949 WILD-TYPE	29	15	11	9	10

'KIAA1949 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S535. Gene #54: 'KIAA1949 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KIAA1949 MUTATED	2	0	3	3	2
KIAA1949 WILD-TYPE	24	20	25	22	18

'KIAA1949 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S536. Gene #54: 'KIAA1949 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KIAA1949 MUTATED	5	5	0
KIAA1949 WILD-TYPE	43	48	18

'KIAA1949 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S537. Gene #54: 'KIAA1949 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KIAA1949 MUTATED	4	3	2	1	0
KIAA1949 WILD-TYPE	33	28	15	20	13

'KIAA1949 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S538. Gene #54: 'KIAA1949 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KIAA1949 MUTATED	8	2	0
KIAA1949 WILD-TYPE	63	25	21

'KIAA1949 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S539. Gene #54: 'KIAA1949 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KIAA1949 MUTATED	2	0	1	2	4	1	0
KIAA1949 WILD-TYPE	16	8	9	6	32	24	12

'KIAA1949 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S540. Gene #54: 'KIAA1949 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KIAA1949 MUTATED	2	3	2	3	0	0
KIAA1949 WILD-TYPE	15	29	11	29	16	7

'OR10A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S541. Gene #55: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OR10A7 MUTATED	2	7	2	1
OR10A7 WILD-TYPE	17	46	28	23

'OR10A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S542. Gene #55: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OR10A7 MUTATED	4	5	2	1
OR10A7 WILD-TYPE	31	25	32	25

'OR10A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 1

Table S543. Gene #55: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OR10A7 MUTATED	0	3	1	2	1
OR10A7 WILD-TYPE	29	15	12	7	12

'OR10A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S544. Gene #55: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OR10A7 MUTATED	1	3	1	1	1
OR10A7 WILD-TYPE	31	15	11	9	9

'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S545. Gene #55: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OR10A7 MUTATED	2	2	3	3	1
OR10A7 WILD-TYPE	24	18	25	22	19

'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S546. Gene #55: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OR10A7 MUTATED	6	4	1
OR10A7 WILD-TYPE	42	49	17

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S547. Gene #55: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OR10A7 MUTATED	6	1	2	0	2
OR10A7 WILD-TYPE	31	30	15	21	11

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.084 (Fisher's exact test), Q value = 1

Table S548. Gene #55: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OR10A7 MUTATED	6	5	0
OR10A7 WILD-TYPE	65	22	21

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S549. Gene #55: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OR10A7 MUTATED	2	1	0	1	5	1	1
OR10A7 WILD-TYPE	16	7	10	7	31	24	11

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S550. Gene #55: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OR10A7 MUTATED	1	4	1	4	0	1
OR10A7 WILD-TYPE	16	28	12	28	16	6

'SYNGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S551. Gene #56: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SYNGAP1 MUTATED	3	5	6	1
SYNGAP1 WILD-TYPE	16	48	24	23

'SYNGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S552. Gene #56: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SYNGAP1 MUTATED	1	3	6	5
SYNGAP1 WILD-TYPE	34	27	28	21

'SYNGAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S553. Gene #56: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SYNGAP1 MUTATED	2	5	2	1	1
SYNGAP1 WILD-TYPE	27	13	11	8	12

'SYNGAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S554. Gene #56: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SYNGAP1 MUTATED	3	4	1	0	3
SYNGAP1 WILD-TYPE	29	14	11	10	7

'SYNGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S555. Gene #56: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SYNGAP1 MUTATED	2	2	4	3	4
SYNGAP1 WILD-TYPE	24	18	24	22	16

'SYNGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S556. Gene #56: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SYNGAP1 MUTATED	8	6	1
SYNGAP1 WILD-TYPE	40	47	17

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S557. Gene #56: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SYNGAP1 MUTATED	6	4	2	2	1
SYNGAP1 WILD-TYPE	31	27	15	19	12

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S558. Gene #56: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SYNGAP1 MUTATED	10	3	2
SYNGAP1 WILD-TYPE	61	24	19

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S559. Gene #56: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SYNGAP1 MUTATED	2	0	3	1	6	2	1
SYNGAP1 WILD-TYPE	16	8	7	7	30	23	11

'SYNGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S560. Gene #56: 'SYNGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SYNGAP1 MUTATED	1	4	2	4	4	0
SYNGAP1 WILD-TYPE	16	28	11	28	12	7

'TOX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S561. Gene #57: 'TOX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TOX4 MUTATED	2	4	2	1
TOX4 WILD-TYPE	17	49	28	23

'TOX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S562. Gene #57: 'TOX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TOX4 MUTATED	5	1	1	2
TOX4 WILD-TYPE	30	29	33	24

'TOX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S563. Gene #57: 'TOX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TOX4 MUTATED	2	0	2	1	0
TOX4 WILD-TYPE	27	18	11	8	13

'TOX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S564. Gene #57: 'TOX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TOX4 MUTATED	3	0	1	0	1
TOX4 WILD-TYPE	29	18	11	10	9

'TOX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S565. Gene #57: 'TOX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TOX4 MUTATED	0	1	4	2	2
TOX4 WILD-TYPE	26	19	24	23	18

'TOX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S566. Gene #57: 'TOX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TOX4 MUTATED	5	4	0
TOX4 WILD-TYPE	43	49	18

'TOX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S567. Gene #57: 'TOX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TOX4 MUTATED	4	2	1	2	0
TOX4 WILD-TYPE	33	29	16	19	13

'TOX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S568. Gene #57: 'TOX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TOX4 MUTATED	7	2	0
TOX4 WILD-TYPE	64	25	21

'TOX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S569. Gene #57: 'TOX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TOX4 MUTATED	2	1	2	1	2	1	0
TOX4 WILD-TYPE	16	7	8	7	34	24	12

'TOX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S570. Gene #57: 'TOX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TOX4 MUTATED	3	2	1	2	1	0
TOX4 WILD-TYPE	14	30	12	30	15	7

'CUL4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S571. Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CUL4B MUTATED	1	5	5	2
CUL4B WILD-TYPE	18	48	25	22

'CUL4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S572. Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CUL4B MUTATED	4	2	3	4
CUL4B WILD-TYPE	31	28	31	22

'CUL4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S573. Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CUL4B MUTATED	2	1	2	3	2
CUL4B WILD-TYPE	27	17	11	6	11

'CUL4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S574. Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CUL4B MUTATED	2	2	2	3	1
CUL4B WILD-TYPE	30	16	10	7	9

'CUL4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S575. Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CUL4B MUTATED	2	2	3	4	2
CUL4B WILD-TYPE	24	18	25	21	18

'CUL4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0531 (Fisher's exact test), Q value = 1

Table S576. Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CUL4B MUTATED	8	2	3
CUL4B WILD-TYPE	40	51	15

'CUL4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S577. Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CUL4B MUTATED	4	3	1	3	2
CUL4B WILD-TYPE	33	28	16	18	11

'CUL4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S578. Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CUL4B MUTATED	8	2	3
CUL4B WILD-TYPE	63	25	18

'CUL4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 1

Table S579. Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CUL4B MUTATED	1	0	3	3	4	0	2
CUL4B WILD-TYPE	17	8	7	5	32	25	10

Figure S42. Get High-res Image Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CUL4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S580. Gene #58: 'CUL4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CUL4B MUTATED	2	1	2	5	2	1
CUL4B WILD-TYPE	15	31	11	27	14	6

'NFAT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S581. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NFAT5 MUTATED	5	5	2	1
NFAT5 WILD-TYPE	14	48	28	23

'NFAT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S582. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NFAT5 MUTATED	3	2	7	1
NFAT5 WILD-TYPE	32	28	27	25

'NFAT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S583. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NFAT5 MUTATED	2	3	2	1	0
NFAT5 WILD-TYPE	27	15	11	8	13

'NFAT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S584. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NFAT5 MUTATED	3	3	0	0	2
NFAT5 WILD-TYPE	29	15	12	10	8

'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S585. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NFAT5 MUTATED	3	2	4	2	2
NFAT5 WILD-TYPE	23	18	24	23	18

'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S586. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NFAT5 MUTATED	4	8	1
NFAT5 WILD-TYPE	44	45	17

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S587. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NFAT5 MUTATED	8	2	1	1	1
NFAT5 WILD-TYPE	29	29	16	20	12

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S588. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NFAT5 MUTATED	10	2	1
NFAT5 WILD-TYPE	61	25	20

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S589. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NFAT5 MUTATED	1	1	1	2	6	2	0
NFAT5 WILD-TYPE	17	7	9	6	30	23	12

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S590. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NFAT5 MUTATED	1	6	2	3	1	0
NFAT5 WILD-TYPE	16	26	11	29	15	7

'OTOF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S591. Gene #60: 'OTOF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OTOF MUTATED	2	8	6	2
OTOF WILD-TYPE	17	45	24	22

'OTOF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S592. Gene #60: 'OTOF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OTOF MUTATED	7	3	4	4
OTOF WILD-TYPE	28	27	30	22

'OTOF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S593. Gene #60: 'OTOF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OTOF MUTATED	5	4	1	2	0
OTOF WILD-TYPE	24	14	12	7	13

'OTOF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S594. Gene #60: 'OTOF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OTOF MUTATED	5	4	0	2	1
OTOF WILD-TYPE	27	14	12	8	9

'OTOF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S595. Gene #60: 'OTOF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OTOF MUTATED	6	2	3	3	3
OTOF WILD-TYPE	20	18	25	22	17

'OTOF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S596. Gene #60: 'OTOF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OTOF MUTATED	3	11	3
OTOF WILD-TYPE	45	42	15

'OTOF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S597. Gene #60: 'OTOF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OTOF MUTATED	5	5	1	3	3
OTOF WILD-TYPE	32	26	16	18	10

'OTOF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S598. Gene #60: 'OTOF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OTOF MUTATED	11	2	4
OTOF WILD-TYPE	60	25	17

'OTOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S599. Gene #60: 'OTOF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OTOF MUTATED	0	0	2	3	6	4	2
OTOF WILD-TYPE	18	8	8	5	30	21	10

'OTOF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S600. Gene #60: 'OTOF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OTOF MUTATED	2	4	3	4	4	0
OTOF WILD-TYPE	15	28	10	28	12	7

'SMG7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S601. Gene #61: 'SMG7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SMG7 MUTATED	2	5	2	1
SMG7 WILD-TYPE	17	48	28	23

'SMG7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S602. Gene #61: 'SMG7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SMG7 MUTATED	3	1	5	1
SMG7 WILD-TYPE	32	29	29	25

'SMG7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 1

Table S603. Gene #61: 'SMG7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SMG7 MUTATED	1	1	1	3	0
SMG7 WILD-TYPE	28	17	12	6	13

'SMG7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S604. Gene #61: 'SMG7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SMG7 MUTATED	2	1	1	2	0
SMG7 WILD-TYPE	30	17	11	8	10

'SMG7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S605. Gene #61: 'SMG7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SMG7 MUTATED	2	1	4	3	0
SMG7 WILD-TYPE	24	19	24	22	20

'SMG7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S606. Gene #61: 'SMG7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SMG7 MUTATED	4	6	0
SMG7 WILD-TYPE	44	47	18

'SMG7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S607. Gene #61: 'SMG7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SMG7 MUTATED	5	0	2	2	1
SMG7 WILD-TYPE	32	31	15	19	12

'SMG7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S608. Gene #61: 'SMG7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SMG7 MUTATED	9	1	0
SMG7 WILD-TYPE	62	26	21

'SMG7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 1

Table S609. Gene #61: 'SMG7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SMG7 MUTATED	1	2	1	0	6	0	0
SMG7 WILD-TYPE	17	6	9	8	30	25	12

'SMG7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S610. Gene #61: 'SMG7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SMG7 MUTATED	2	3	1	4	0	0
SMG7 WILD-TYPE	15	29	12	28	16	7

'SLC6A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S611. Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC6A9 MUTATED	2	4	3	1
SLC6A9 WILD-TYPE	17	49	27	23

'SLC6A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S612. Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC6A9 MUTATED	2	2	3	3
SLC6A9 WILD-TYPE	33	28	31	23

'SLC6A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S613. Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLC6A9 MUTATED	1	0	2	0	2
SLC6A9 WILD-TYPE	28	18	11	9	11

'SLC6A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 1

Table S614. Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLC6A9 MUTATED	1	0	1	0	3
SLC6A9 WILD-TYPE	31	18	11	10	7

Figure S43. Get High-res Image Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC6A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S615. Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC6A9 MUTATED	0	1	4	2	3
SLC6A9 WILD-TYPE	26	19	24	23	17

'SLC6A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S616. Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC6A9 MUTATED	4	3	3
SLC6A9 WILD-TYPE	44	50	15

'SLC6A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S617. Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC6A9 MUTATED	2	4	1	2	1
SLC6A9 WILD-TYPE	35	27	16	19	12

'SLC6A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S618. Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC6A9 MUTATED	6	1	3
SLC6A9 WILD-TYPE	65	26	18

'SLC6A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S619. Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC6A9 MUTATED	1	1	0	1	2	4	1
SLC6A9 WILD-TYPE	17	7	10	7	34	21	11

'SLC6A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S620. Gene #62: 'SLC6A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC6A9 MUTATED	1	1	1	2	4	1
SLC6A9 WILD-TYPE	16	31	12	30	12	6

'INTS7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S621. Gene #63: 'INTS7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
INTS7 MUTATED	1	5	2	1
INTS7 WILD-TYPE	18	48	28	23

'INTS7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S622. Gene #63: 'INTS7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
INTS7 MUTATED	3	3	3	0
INTS7 WILD-TYPE	32	27	31	26

'INTS7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S623. Gene #63: 'INTS7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
INTS7 MUTATED	3	1	0	1	1
INTS7 WILD-TYPE	26	17	13	8	12

'INTS7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S624. Gene #63: 'INTS7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
INTS7 MUTATED	4	1	0	0	1
INTS7 WILD-TYPE	28	17	12	10	9

'INTS7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S625. Gene #63: 'INTS7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
INTS7 MUTATED	2	1	3	3	0
INTS7 WILD-TYPE	24	19	25	22	20

'INTS7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S626. Gene #63: 'INTS7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
INTS7 MUTATED	4	5	0
INTS7 WILD-TYPE	44	48	18

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S627. Gene #63: 'INTS7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
INTS7 MUTATED	4	1	2	2	0
INTS7 WILD-TYPE	33	30	15	19	13

'INTS7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S628. Gene #63: 'INTS7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
INTS7 MUTATED	7	2	0
INTS7 WILD-TYPE	64	25	21

'INTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S629. Gene #63: 'INTS7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
INTS7 MUTATED	1	0	3	0	3	1	1
INTS7 WILD-TYPE	17	8	7	8	33	24	11

'INTS7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S630. Gene #63: 'INTS7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
INTS7 MUTATED	2	4	0	3	0	0
INTS7 WILD-TYPE	15	28	13	29	16	7

'PASD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 1

Table S631. Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PASD1 MUTATED	0	4	7	1
PASD1 WILD-TYPE	19	49	23	23

Figure S44. Get High-res Image Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PASD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S632. Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PASD1 MUTATED	5	3	1	3
PASD1 WILD-TYPE	30	27	33	23

'PASD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S633. Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PASD1 MUTATED	3	0	2	1	1
PASD1 WILD-TYPE	26	18	11	8	12

'PASD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S634. Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PASD1 MUTATED	2	0	2	2	1
PASD1 WILD-TYPE	30	18	10	8	9

'PASD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S635. Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PASD1 MUTATED	2	2	2	4	2
PASD1 WILD-TYPE	24	18	26	21	18

'PASD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S636. Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PASD1 MUTATED	6	4	2
PASD1 WILD-TYPE	42	49	16

'PASD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S637. Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PASD1 MUTATED	2	4	2	3	1
PASD1 WILD-TYPE	35	27	15	18	12

'PASD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S638. Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PASD1 MUTATED	5	5	2
PASD1 WILD-TYPE	66	22	19

'PASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 1

Table S639. Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PASD1 MUTATED	1	1	4	1	2	3	0
PASD1 WILD-TYPE	17	7	6	7	34	22	12

'PASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S640. Gene #64: 'PASD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PASD1 MUTATED	1	1	2	5	3	0
PASD1 WILD-TYPE	16	31	11	27	13	7

'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S641. Gene #65: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BRDT MUTATED	0	4	4	3
BRDT WILD-TYPE	19	49	26	21

'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S642. Gene #65: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BRDT MUTATED	5	2	3	1
BRDT WILD-TYPE	30	28	31	25

'BRDT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S643. Gene #65: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BRDT MUTATED	3	1	0	1	0
BRDT WILD-TYPE	26	17	13	8	13

'BRDT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S644. Gene #65: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BRDT MUTATED	4	0	0	1	0
BRDT WILD-TYPE	28	18	12	9	10

'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S645. Gene #65: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BRDT MUTATED	5	1	1	3	1
BRDT WILD-TYPE	21	19	27	22	19

'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S646. Gene #65: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BRDT MUTATED	4	6	1
BRDT WILD-TYPE	44	47	17

'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S647. Gene #65: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BRDT MUTATED	4	0	2	3	2
BRDT WILD-TYPE	33	31	15	18	11

'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S648. Gene #65: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BRDT MUTATED	6	3	2
BRDT WILD-TYPE	65	24	19

'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S649. Gene #65: 'BRDT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BRDT MUTATED	1	1	2	1	3	1	1
BRDT WILD-TYPE	17	7	8	7	33	24	11

'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S650. Gene #65: 'BRDT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BRDT MUTATED	0	3	1	5	1	0
BRDT WILD-TYPE	17	29	12	27	15	7

'CDH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S651. Gene #66: 'CDH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CDH3 MUTATED	1	2	3	1
CDH3 WILD-TYPE	18	51	27	23

'CDH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S652. Gene #66: 'CDH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CDH3 MUTATED	4	1	1	1
CDH3 WILD-TYPE	31	29	33	25

'CDH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S653. Gene #66: 'CDH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CDH3 MUTATED	2	0	0	1	0
CDH3 WILD-TYPE	27	18	13	8	13

'CDH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S654. Gene #66: 'CDH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CDH3 MUTATED	3	0	0	0	0
CDH3 WILD-TYPE	29	18	12	10	10

'CDH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S655. Gene #66: 'CDH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CDH3 MUTATED	3	2	0	1	0
CDH3 WILD-TYPE	23	18	28	24	20

'CDH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S656. Gene #66: 'CDH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CDH3 MUTATED	1	3	2
CDH3 WILD-TYPE	47	50	16

'CDH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S657. Gene #66: 'CDH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CDH3 MUTATED	2	0	0	2	2
CDH3 WILD-TYPE	35	31	17	19	11

'CDH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S658. Gene #66: 'CDH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CDH3 MUTATED	4	1	1
CDH3 WILD-TYPE	67	26	20

'CDH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S659. Gene #66: 'CDH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CDH3 MUTATED	0	0	1	0	2	1	1
CDH3 WILD-TYPE	18	8	9	8	34	24	11

'CDH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S660. Gene #66: 'CDH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CDH3 MUTATED	0	2	0	1	1	1
CDH3 WILD-TYPE	17	30	13	31	15	6

'CTAGE5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S661. Gene #67: 'CTAGE5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CTAGE5 MUTATED	2	2	2	2
CTAGE5 WILD-TYPE	17	51	28	22

'CTAGE5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S662. Gene #67: 'CTAGE5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CTAGE5 MUTATED	2	2	3	1
CTAGE5 WILD-TYPE	33	28	31	25

'CTAGE5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S663. Gene #67: 'CTAGE5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CTAGE5 MUTATED	3	1	0	1	0
CTAGE5 WILD-TYPE	26	17	13	8	13

'CTAGE5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S664. Gene #67: 'CTAGE5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CTAGE5 MUTATED	4	1	0	0	0
CTAGE5 WILD-TYPE	28	17	12	10	10

'CTAGE5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S665. Gene #67: 'CTAGE5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CTAGE5 MUTATED	3	2	1	2	0
CTAGE5 WILD-TYPE	23	18	27	23	20

'CTAGE5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S666. Gene #67: 'CTAGE5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CTAGE5 MUTATED	3	3	2
CTAGE5 WILD-TYPE	45	50	16

'CTAGE5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S667. Gene #67: 'CTAGE5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CTAGE5 MUTATED	1	1	2	2	2
CTAGE5 WILD-TYPE	36	30	15	19	11

'CTAGE5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S668. Gene #67: 'CTAGE5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CTAGE5 MUTATED	5	1	2
CTAGE5 WILD-TYPE	66	26	19

'CTAGE5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S669. Gene #67: 'CTAGE5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CTAGE5 MUTATED	1	0	1	0	3	2	1
CTAGE5 WILD-TYPE	17	8	9	8	33	23	11

'CTAGE5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S670. Gene #67: 'CTAGE5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CTAGE5 MUTATED	2	2	0	2	1	1
CTAGE5 WILD-TYPE	15	30	13	30	15	6

'C6ORF165 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00723 (Fisher's exact test), Q value = 1

Table S671. Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C6ORF165 MUTATED	4	1	4	0
C6ORF165 WILD-TYPE	15	52	26	24

Figure S45. Get High-res Image Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C6ORF165 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S672. Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C6ORF165 MUTATED	4	2	2	1
C6ORF165 WILD-TYPE	31	28	32	25

'C6ORF165 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S673. Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
C6ORF165 MUTATED	1	0	1	1	1
C6ORF165 WILD-TYPE	28	18	12	8	12

'C6ORF165 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S674. Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
C6ORF165 MUTATED	2	0	1	0	1
C6ORF165 WILD-TYPE	30	18	11	10	9

'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S675. Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C6ORF165 MUTATED	2	2	2	2	1
C6ORF165 WILD-TYPE	24	18	26	23	19

'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S676. Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C6ORF165 MUTATED	4	3	2
C6ORF165 WILD-TYPE	44	50	16

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S677. Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C6ORF165 MUTATED	4	1	0	3	1
C6ORF165 WILD-TYPE	33	30	17	18	12

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S678. Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C6ORF165 MUTATED	7	0	2
C6ORF165 WILD-TYPE	64	27	19

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S679. Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C6ORF165 MUTATED	1	0	1	1	2	2	1
C6ORF165 WILD-TYPE	17	8	9	7	34	23	11

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S680. Gene #68: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C6ORF165 MUTATED	1	2	1	2	1	1
C6ORF165 WILD-TYPE	16	30	12	30	15	6

'POP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S681. Gene #69: 'POP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
POP5 MUTATED	0	4	1	1
POP5 WILD-TYPE	19	49	29	23

'POP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S682. Gene #69: 'POP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
POP5 MUTATED	0	1	4	1
POP5 WILD-TYPE	35	29	30	25

'POP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S683. Gene #69: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
POP5 MUTATED	2	1	0	0	1
POP5 WILD-TYPE	27	17	13	9	12

'POP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S684. Gene #69: 'POP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
POP5 MUTATED	1	1	0	1	1
POP5 WILD-TYPE	31	17	12	9	9

'POP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S685. Gene #69: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
POP5 MUTATED	3	1	1	1	0
POP5 WILD-TYPE	23	19	27	24	20

'POP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S686. Gene #69: 'POP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
POP5 MUTATED	3	3	0
POP5 WILD-TYPE	45	50	18

'POP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S687. Gene #69: 'POP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
POP5 MUTATED	1	1	1	2	1
POP5 WILD-TYPE	36	30	16	19	12

'POP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S688. Gene #69: 'POP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
POP5 MUTATED	5	1	0
POP5 WILD-TYPE	66	26	21

'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S689. Gene #69: 'POP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
POP5 MUTATED	0	1	1	1	3	0	0
POP5 WILD-TYPE	18	7	9	7	33	25	12

'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S690. Gene #69: 'POP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
POP5 MUTATED	3	1	1	1	0	0
POP5 WILD-TYPE	14	31	12	31	16	7

'CEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S691. Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CEL MUTATED	1	1	3	2
CEL WILD-TYPE	18	52	27	22

'CEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S692. Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CEL MUTATED	1	1	1	4
CEL WILD-TYPE	34	29	33	22

'CEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S693. Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CEL MUTATED	1	0	1	0	1
CEL WILD-TYPE	28	18	12	9	12

'CEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S694. Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CEL MUTATED	1	0	0	0	2
CEL WILD-TYPE	31	18	12	10	8

'CEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S695. Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CEL MUTATED	1	3	1	0	2
CEL WILD-TYPE	25	17	27	25	18

'CEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0863 (Fisher's exact test), Q value = 1

Table S696. Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CEL MUTATED	1	3	3
CEL WILD-TYPE	47	50	15

'CEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0893 (Fisher's exact test), Q value = 1

Table S697. Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CEL MUTATED	2	2	0	0	3
CEL WILD-TYPE	35	29	17	21	10

'CEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 1

Table S698. Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CEL MUTATED	3	0	4
CEL WILD-TYPE	68	27	17

Figure S46. Get High-res Image Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S699. Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CEL MUTATED	0	0	0	0	2	4	1
CEL WILD-TYPE	18	8	10	8	34	21	11

'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 1

Table S700. Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CEL MUTATED	1	2	0	0	4	0
CEL WILD-TYPE	16	30	13	32	12	7

Figure S47. Get High-res Image Gene #70: 'CEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EIF3C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S701. Gene #71: 'EIF3C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EIF3C MUTATED	1	5	1	2
EIF3C WILD-TYPE	18	48	29	22

'EIF3C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S702. Gene #71: 'EIF3C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EIF3C MUTATED	6	1	1	1
EIF3C WILD-TYPE	29	29	33	25

'EIF3C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S703. Gene #71: 'EIF3C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EIF3C MUTATED	2	0	1	2	0
EIF3C WILD-TYPE	27	18	12	7	13

'EIF3C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S704. Gene #71: 'EIF3C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EIF3C MUTATED	4	0	0	1	0
EIF3C WILD-TYPE	28	18	12	9	10

'EIF3C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S705. Gene #71: 'EIF3C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EIF3C MUTATED	2	0	3	3	1
EIF3C WILD-TYPE	24	20	25	22	19

'EIF3C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S706. Gene #71: 'EIF3C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EIF3C MUTATED	3	6	0
EIF3C WILD-TYPE	45	47	18

'EIF3C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S707. Gene #71: 'EIF3C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EIF3C MUTATED	2	3	2	1	1
EIF3C WILD-TYPE	35	28	15	20	12

'EIF3C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S708. Gene #71: 'EIF3C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EIF3C MUTATED	7	1	1
EIF3C WILD-TYPE	64	26	20

'EIF3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S709. Gene #71: 'EIF3C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EIF3C MUTATED	1	1	1	1	3	1	1
EIF3C WILD-TYPE	17	7	9	7	33	24	11

'EIF3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S710. Gene #71: 'EIF3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EIF3C MUTATED	0	3	2	4	0	0
EIF3C WILD-TYPE	17	29	11	28	16	7

'NR4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S711. Gene #72: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NR4A3 MUTATED	1	5	1	0
NR4A3 WILD-TYPE	18	48	29	24

'NR4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S712. Gene #72: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NR4A3 MUTATED	2	1	2	2
NR4A3 WILD-TYPE	33	29	32	24

'NR4A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S713. Gene #72: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NR4A3 MUTATED	2	1	0	1	0
NR4A3 WILD-TYPE	27	17	13	8	13

'NR4A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S714. Gene #72: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NR4A3 MUTATED	2	1	0	1	0
NR4A3 WILD-TYPE	30	17	12	9	10

'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S715. Gene #72: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NR4A3 MUTATED	2	0	2	2	1
NR4A3 WILD-TYPE	24	20	26	23	19

'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S716. Gene #72: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NR4A3 MUTATED	2	5	0
NR4A3 WILD-TYPE	46	48	18

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S717. Gene #72: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NR4A3 MUTATED	2	2	1	2	0
NR4A3 WILD-TYPE	35	29	16	19	13

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S718. Gene #72: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NR4A3 MUTATED	6	1	0
NR4A3 WILD-TYPE	65	26	21

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 1

Table S719. Gene #72: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NR4A3 MUTATED	0	0	3	0	3	0	1
NR4A3 WILD-TYPE	18	8	7	8	33	25	11

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S720. Gene #72: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NR4A3 MUTATED	1	2	2	2	0	0
NR4A3 WILD-TYPE	16	30	11	30	16	7

'DPYS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S721. Gene #73: 'DPYS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DPYS MUTATED	2	3	4	2
DPYS WILD-TYPE	17	50	26	22

'DPYS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S722. Gene #73: 'DPYS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DPYS MUTATED	3	4	2	2
DPYS WILD-TYPE	32	26	32	24

'DPYS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S723. Gene #73: 'DPYS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DPYS MUTATED	2	3	0	1	2
DPYS WILD-TYPE	27	15	13	8	11

'DPYS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S724. Gene #73: 'DPYS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DPYS MUTATED	3	3	1	0	1
DPYS WILD-TYPE	29	15	11	10	9

'DPYS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S725. Gene #73: 'DPYS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DPYS MUTATED	1	4	3	2	1
DPYS WILD-TYPE	25	16	25	23	19

'DPYS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 1

Table S726. Gene #73: 'DPYS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DPYS MUTATED	5	2	4
DPYS WILD-TYPE	43	51	14

'DPYS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S727. Gene #73: 'DPYS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DPYS MUTATED	3	2	1	4	1
DPYS WILD-TYPE	34	29	16	17	12

'DPYS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S728. Gene #73: 'DPYS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DPYS MUTATED	6	1	4
DPYS WILD-TYPE	65	26	17

'DPYS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S729. Gene #73: 'DPYS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DPYS MUTATED	2	0	1	1	3	1	3
DPYS WILD-TYPE	16	8	9	7	33	24	9

'DPYS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S730. Gene #73: 'DPYS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DPYS MUTATED	2	3	1	2	1	2
DPYS WILD-TYPE	15	29	12	30	15	5

'LRIG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S731. Gene #74: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LRIG1 MUTATED	1	3	5	2
LRIG1 WILD-TYPE	18	50	25	22

'LRIG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S732. Gene #74: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LRIG1 MUTATED	4	2	1	4
LRIG1 WILD-TYPE	31	28	33	22

'LRIG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0958 (Fisher's exact test), Q value = 1

Table S733. Gene #74: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
LRIG1 MUTATED	0	1	1	2	1
LRIG1 WILD-TYPE	29	17	12	7	12

'LRIG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S734. Gene #74: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
LRIG1 MUTATED	1	2	1	1	0
LRIG1 WILD-TYPE	31	16	11	9	10

'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S735. Gene #74: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LRIG1 MUTATED	3	2	1	2	3
LRIG1 WILD-TYPE	23	18	27	23	17

'LRIG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S736. Gene #74: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LRIG1 MUTATED	4	6	1
LRIG1 WILD-TYPE	44	47	17

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S737. Gene #74: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LRIG1 MUTATED	1	5	0	3	2
LRIG1 WILD-TYPE	36	26	17	18	11

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S738. Gene #74: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LRIG1 MUTATED	7	4	0
LRIG1 WILD-TYPE	64	23	21

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S739. Gene #74: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LRIG1 MUTATED	1	2	1	1	1	3	1
LRIG1 WILD-TYPE	17	6	9	7	35	22	11

'LRIG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S740. Gene #74: 'LRIG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LRIG1 MUTATED	3	1	1	3	1	1
LRIG1 WILD-TYPE	14	31	12	29	15	6

'EPS8L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S741. Gene #75: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EPS8L3 MUTATED	0	2	4	2
EPS8L3 WILD-TYPE	19	51	26	22

'EPS8L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S742. Gene #75: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EPS8L3 MUTATED	1	2	2	3
EPS8L3 WILD-TYPE	34	28	32	23

'EPS8L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S743. Gene #75: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EPS8L3 MUTATED	0	2	2	1	1
EPS8L3 WILD-TYPE	29	16	11	8	12

'EPS8L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S744. Gene #75: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EPS8L3 MUTATED	1	2	1	0	2
EPS8L3 WILD-TYPE	31	16	11	10	8

'EPS8L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S745. Gene #75: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EPS8L3 MUTATED	0	1	2	2	2
EPS8L3 WILD-TYPE	26	19	26	23	18

'EPS8L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S746. Gene #75: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EPS8L3 MUTATED	4	2	1
EPS8L3 WILD-TYPE	44	51	17

'EPS8L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S747. Gene #75: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EPS8L3 MUTATED	1	2	0	3	1
EPS8L3 WILD-TYPE	36	29	17	18	12

'EPS8L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S748. Gene #75: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EPS8L3 MUTATED	5	1	1
EPS8L3 WILD-TYPE	66	26	20

'EPS8L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S749. Gene #75: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EPS8L3 MUTATED	0	0	1	1	2	2	0
EPS8L3 WILD-TYPE	18	8	9	7	34	23	12

'EPS8L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S750. Gene #75: 'EPS8L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EPS8L3 MUTATED	0	2	1	2	1	0
EPS8L3 WILD-TYPE	17	30	12	30	15	7

'RIOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S751. Gene #76: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RIOK1 MUTATED	1	3	3	1
RIOK1 WILD-TYPE	18	50	27	23

'RIOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S752. Gene #76: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RIOK1 MUTATED	2	1	3	2
RIOK1 WILD-TYPE	33	29	31	24

'RIOK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S753. Gene #76: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RIOK1 MUTATED	1	1	1	1	2
RIOK1 WILD-TYPE	28	17	12	8	11

'RIOK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S754. Gene #76: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RIOK1 MUTATED	2	1	2	0	1
RIOK1 WILD-TYPE	30	17	10	10	9

'RIOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S755. Gene #76: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RIOK1 MUTATED	2	2	1	2	1
RIOK1 WILD-TYPE	24	18	27	23	19

'RIOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S756. Gene #76: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RIOK1 MUTATED	3	4	1
RIOK1 WILD-TYPE	45	49	17

'RIOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S757. Gene #76: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RIOK1 MUTATED	3	1	1	2	1
RIOK1 WILD-TYPE	34	30	16	19	12

'RIOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S758. Gene #76: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RIOK1 MUTATED	6	1	1
RIOK1 WILD-TYPE	65	26	20

'RIOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S759. Gene #76: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RIOK1 MUTATED	1	1	1	0	2	2	0
RIOK1 WILD-TYPE	17	7	9	8	34	23	12

'RIOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S760. Gene #76: 'RIOK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RIOK1 MUTATED	1	3	0	2	1	0
RIOK1 WILD-TYPE	16	29	13	30	15	7

'RBM10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S761. Gene #77: 'RBM10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RBM10 MUTATED	0	5	4	2
RBM10 WILD-TYPE	19	48	26	22

'RBM10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S762. Gene #77: 'RBM10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RBM10 MUTATED	5	3	1	2
RBM10 WILD-TYPE	30	27	33	24

'RBM10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S763. Gene #77: 'RBM10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RBM10 MUTATED	3	2	0	2	1
RBM10 WILD-TYPE	26	16	13	7	12

'RBM10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S764. Gene #77: 'RBM10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RBM10 MUTATED	5	1	0	1	1
RBM10 WILD-TYPE	27	17	12	9	9

'RBM10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S765. Gene #77: 'RBM10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RBM10 MUTATED	2	2	2	3	1
RBM10 WILD-TYPE	24	18	26	22	19

'RBM10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S766. Gene #77: 'RBM10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RBM10 MUTATED	5	4	1
RBM10 WILD-TYPE	43	49	17

'RBM10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S767. Gene #77: 'RBM10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RBM10 MUTATED	3	2	1	2	2
RBM10 WILD-TYPE	34	29	16	19	11

'RBM10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S768. Gene #77: 'RBM10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RBM10 MUTATED	5	3	2
RBM10 WILD-TYPE	66	24	19

'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S769. Gene #77: 'RBM10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RBM10 MUTATED	2	1	2	1	1	1	2
RBM10 WILD-TYPE	16	7	8	7	35	24	10

'RBM10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S770. Gene #77: 'RBM10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RBM10 MUTATED	1	3	0	5	1	0
RBM10 WILD-TYPE	16	29	13	27	15	7

'USP40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S771. Gene #78: 'USP40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
USP40 MUTATED	2	5	1	2
USP40 WILD-TYPE	17	48	29	22

'USP40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 1

Table S772. Gene #78: 'USP40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
USP40 MUTATED	5	0	4	1
USP40 WILD-TYPE	30	30	30	25

'USP40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S773. Gene #78: 'USP40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
USP40 MUTATED	2	0	1	1	1
USP40 WILD-TYPE	27	18	12	8	12

'USP40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S774. Gene #78: 'USP40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
USP40 MUTATED	3	1	1	0	0
USP40 WILD-TYPE	29	17	11	10	10

'USP40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S775. Gene #78: 'USP40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
USP40 MUTATED	4	1	3	1	1
USP40 WILD-TYPE	22	19	25	24	19

'USP40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S776. Gene #78: 'USP40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
USP40 MUTATED	3	6	1
USP40 WILD-TYPE	45	47	17

'USP40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S777. Gene #78: 'USP40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
USP40 MUTATED	6	1	0	1	2
USP40 WILD-TYPE	31	30	17	20	11

'USP40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S778. Gene #78: 'USP40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
USP40 MUTATED	8	0	2
USP40 WILD-TYPE	63	27	19

'USP40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S779. Gene #78: 'USP40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
USP40 MUTATED	0	1	1	1	5	0	2
USP40 WILD-TYPE	18	7	9	7	31	25	10

'USP40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S780. Gene #78: 'USP40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
USP40 MUTATED	4	2	1	3	0	0
USP40 WILD-TYPE	13	30	12	29	16	7

'NAPSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S781. Gene #79: 'NAPSA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NAPSA MUTATED	1	2	3	2
NAPSA WILD-TYPE	18	51	27	22

'NAPSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S782. Gene #79: 'NAPSA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NAPSA MUTATED	3	2	0	3
NAPSA WILD-TYPE	32	28	34	23

'NAPSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S783. Gene #79: 'NAPSA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NAPSA MUTATED	1	2	1	2	0
NAPSA WILD-TYPE	28	16	12	7	13

'NAPSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S784. Gene #79: 'NAPSA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NAPSA MUTATED	3	1	1	1	0
NAPSA WILD-TYPE	29	17	11	9	10

'NAPSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S785. Gene #79: 'NAPSA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NAPSA MUTATED	1	0	1	3	2
NAPSA WILD-TYPE	25	20	27	22	18

'NAPSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S786. Gene #79: 'NAPSA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NAPSA MUTATED	3	3	1
NAPSA WILD-TYPE	45	50	17

'NAPSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S787. Gene #79: 'NAPSA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NAPSA MUTATED	1	3	2	1	0
NAPSA WILD-TYPE	36	28	15	20	13

'NAPSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S788. Gene #79: 'NAPSA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NAPSA MUTATED	5	1	1
NAPSA WILD-TYPE	66	26	20

'NAPSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S789. Gene #79: 'NAPSA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NAPSA MUTATED	0	1	2	0	2	2	0
NAPSA WILD-TYPE	18	7	8	8	34	23	12

'NAPSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S790. Gene #79: 'NAPSA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NAPSA MUTATED	0	3	0	3	1	0
NAPSA WILD-TYPE	17	29	13	29	15	7

'GPR25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S791. Gene #80: 'GPR25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GPR25 MUTATED	0	3	1	1
GPR25 WILD-TYPE	19	50	29	23

'GPR25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S792. Gene #80: 'GPR25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GPR25 MUTATED	1	2	2	0
GPR25 WILD-TYPE	34	28	32	26

'GPR25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S793. Gene #80: 'GPR25 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GPR25 MUTATED	0	1	1	1	0
GPR25 WILD-TYPE	29	17	12	8	13

'GPR25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S794. Gene #80: 'GPR25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GPR25 MUTATED	1	1	0	0	1
GPR25 WILD-TYPE	31	17	12	10	9

'GPR25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S795. Gene #80: 'GPR25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GPR25 MUTATED	1	0	1	3	0
GPR25 WILD-TYPE	25	20	27	22	20

'GPR25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S796. Gene #80: 'GPR25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GPR25 MUTATED	4	1	0
GPR25 WILD-TYPE	44	52	18

'GPR25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S797. Gene #80: 'GPR25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GPR25 MUTATED	2	0	2	1	0
GPR25 WILD-TYPE	35	31	15	20	13

'GPR25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S798. Gene #80: 'GPR25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GPR25 MUTATED	3	2	0
GPR25 WILD-TYPE	68	25	21

'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S799. Gene #80: 'GPR25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GPR25 MUTATED	1	0	1	0	2	1	0
GPR25 WILD-TYPE	17	8	9	8	34	24	12

'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S800. Gene #80: 'GPR25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GPR25 MUTATED	0	2	0	3	0	0
GPR25 WILD-TYPE	17	30	13	29	16	7

'SETD1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S801. Gene #81: 'SETD1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SETD1A MUTATED	3	5	3	0
SETD1A WILD-TYPE	16	48	27	24

'SETD1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S802. Gene #81: 'SETD1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SETD1A MUTATED	3	2	4	2
SETD1A WILD-TYPE	32	28	30	24

'SETD1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S803. Gene #81: 'SETD1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SETD1A MUTATED	3	1	1	2	0
SETD1A WILD-TYPE	26	17	12	7	13

'SETD1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S804. Gene #81: 'SETD1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SETD1A MUTATED	3	1	1	2	0
SETD1A WILD-TYPE	29	17	11	8	10

'SETD1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S805. Gene #81: 'SETD1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SETD1A MUTATED	2	2	4	3	0
SETD1A WILD-TYPE	24	18	24	22	20

'SETD1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S806. Gene #81: 'SETD1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SETD1A MUTATED	3	6	2
SETD1A WILD-TYPE	45	47	16

'SETD1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S807. Gene #81: 'SETD1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SETD1A MUTATED	5	2	2	0	2
SETD1A WILD-TYPE	32	29	15	21	11

'SETD1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S808. Gene #81: 'SETD1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SETD1A MUTATED	6	3	2
SETD1A WILD-TYPE	65	24	19

'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S809. Gene #81: 'SETD1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SETD1A MUTATED	2	3	0	0	3	2	1
SETD1A WILD-TYPE	16	5	10	8	33	23	11

'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S810. Gene #81: 'SETD1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SETD1A MUTATED	3	3	0	3	2	0
SETD1A WILD-TYPE	14	29	13	29	14	7

'SEC63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S811. Gene #82: 'SEC63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SEC63 MUTATED	0	6	1	1
SEC63 WILD-TYPE	19	47	29	23

'SEC63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S812. Gene #82: 'SEC63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SEC63 MUTATED	2	0	3	3
SEC63 WILD-TYPE	33	30	31	23

'SEC63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S813. Gene #82: 'SEC63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SEC63 MUTATED	2	1	1	2	1
SEC63 WILD-TYPE	27	17	12	7	12

'SEC63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S814. Gene #82: 'SEC63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SEC63 MUTATED	2	0	1	2	2
SEC63 WILD-TYPE	30	18	11	8	8

'SEC63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S815. Gene #82: 'SEC63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SEC63 MUTATED	2	0	2	1	3
SEC63 WILD-TYPE	24	20	26	24	17

'SEC63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S816. Gene #82: 'SEC63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SEC63 MUTATED	6	2	0
SEC63 WILD-TYPE	42	51	18

'SEC63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S817. Gene #82: 'SEC63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SEC63 MUTATED	2	4	1	1	0
SEC63 WILD-TYPE	35	27	16	20	13

'SEC63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S818. Gene #82: 'SEC63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SEC63 MUTATED	6	1	1
SEC63 WILD-TYPE	65	26	20

'SEC63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S819. Gene #82: 'SEC63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SEC63 MUTATED	1	0	1	0	3	3	0
SEC63 WILD-TYPE	17	8	9	8	33	22	12

'SEC63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S820. Gene #82: 'SEC63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SEC63 MUTATED	1	2	1	2	2	0
SEC63 WILD-TYPE	16	30	12	30	14	7

'GAS2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S821. Gene #83: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GAS2L2 MUTATED	2	6	3	1
GAS2L2 WILD-TYPE	17	47	27	23

'GAS2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S822. Gene #83: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GAS2L2 MUTATED	5	2	5	0
GAS2L2 WILD-TYPE	30	28	29	26

'GAS2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S823. Gene #83: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GAS2L2 MUTATED	4	2	1	1	2
GAS2L2 WILD-TYPE	25	16	12	8	11

'GAS2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S824. Gene #83: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GAS2L2 MUTATED	5	2	1	0	2
GAS2L2 WILD-TYPE	27	16	11	10	8

'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S825. Gene #83: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GAS2L2 MUTATED	1	1	4	3	1
GAS2L2 WILD-TYPE	25	19	24	22	19

'GAS2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S826. Gene #83: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GAS2L2 MUTATED	5	5	0
GAS2L2 WILD-TYPE	43	48	18

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.985 (Fisher's exact test), Q value = 1

Table S827. Gene #83: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GAS2L2 MUTATED	4	2	1	2	1
GAS2L2 WILD-TYPE	33	29	16	19	12

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S828. Gene #83: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GAS2L2 MUTATED	7	2	1
GAS2L2 WILD-TYPE	64	25	20

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S829. Gene #83: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GAS2L2 MUTATED	1	0	2	2	4	1	0
GAS2L2 WILD-TYPE	17	8	8	6	32	24	12

'GAS2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S830. Gene #83: 'GAS2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GAS2L2 MUTATED	2	2	2	3	1	0
GAS2L2 WILD-TYPE	15	30	11	29	15	7

'PHF8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S831. Gene #84: 'PHF8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PHF8 MUTATED	4	4	2	1
PHF8 WILD-TYPE	15	49	28	23

'PHF8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S832. Gene #84: 'PHF8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PHF8 MUTATED	2	2	5	2
PHF8 WILD-TYPE	33	28	29	24

'PHF8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S833. Gene #84: 'PHF8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PHF8 MUTATED	5	0	2	0	2
PHF8 WILD-TYPE	24	18	11	9	11

'PHF8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S834. Gene #84: 'PHF8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PHF8 MUTATED	5	0	1	1	2
PHF8 WILD-TYPE	27	18	11	9	8

'PHF8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S835. Gene #84: 'PHF8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PHF8 MUTATED	3	0	4	1	2
PHF8 WILD-TYPE	23	20	24	24	18

'PHF8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S836. Gene #84: 'PHF8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PHF8 MUTATED	3	7	0
PHF8 WILD-TYPE	45	46	18

'PHF8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S837. Gene #84: 'PHF8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PHF8 MUTATED	4	3	1	2	0
PHF8 WILD-TYPE	33	28	16	19	13

'PHF8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S838. Gene #84: 'PHF8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PHF8 MUTATED	9	1	0
PHF8 WILD-TYPE	62	26	21

'PHF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S839. Gene #84: 'PHF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PHF8 MUTATED	0	0	0	1	5	2	1
PHF8 WILD-TYPE	18	8	10	7	31	23	11

'PHF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S840. Gene #84: 'PHF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PHF8 MUTATED	0	5	2	1	1	0
PHF8 WILD-TYPE	17	27	11	31	15	7

'SLC39A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 1

Table S841. Gene #85: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC39A5 MUTATED	1	5	1	1
SLC39A5 WILD-TYPE	18	48	29	23

'SLC39A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S842. Gene #85: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC39A5 MUTATED	4	0	1	3
SLC39A5 WILD-TYPE	31	30	33	23

'SLC39A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S843. Gene #85: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLC39A5 MUTATED	2	1	0	1	2
SLC39A5 WILD-TYPE	27	17	13	8	11

'SLC39A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S844. Gene #85: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLC39A5 MUTATED	2	1	1	1	1
SLC39A5 WILD-TYPE	30	17	11	9	9

'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S845. Gene #85: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC39A5 MUTATED	3	0	1	2	2
SLC39A5 WILD-TYPE	23	20	27	23	18

'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S846. Gene #85: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC39A5 MUTATED	3	4	1
SLC39A5 WILD-TYPE	45	49	17

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S847. Gene #85: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC39A5 MUTATED	2	2	2	0	2
SLC39A5 WILD-TYPE	35	29	15	21	11

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S848. Gene #85: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC39A5 MUTATED	6	1	1
SLC39A5 WILD-TYPE	65	26	20

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S849. Gene #85: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC39A5 MUTATED	2	0	1	1	3	1	0
SLC39A5 WILD-TYPE	16	8	9	7	33	24	12

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S850. Gene #85: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC39A5 MUTATED	1	3	0	2	2	0
SLC39A5 WILD-TYPE	16	29	13	30	14	7

'FAM82A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S851. Gene #86: 'FAM82A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FAM82A2 MUTATED	1	3	4	0
FAM82A2 WILD-TYPE	18	50	26	24

'FAM82A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S852. Gene #86: 'FAM82A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FAM82A2 MUTATED	3	0	3	2
FAM82A2 WILD-TYPE	32	30	31	24

'FAM82A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S853. Gene #86: 'FAM82A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FAM82A2 MUTATED	0	1	0	1	2
FAM82A2 WILD-TYPE	29	17	13	8	11

'FAM82A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S854. Gene #86: 'FAM82A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FAM82A2 MUTATED	1	1	1	0	1
FAM82A2 WILD-TYPE	31	17	11	10	9

'FAM82A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S855. Gene #86: 'FAM82A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FAM82A2 MUTATED	1	0	4	1	2
FAM82A2 WILD-TYPE	25	20	24	24	18

'FAM82A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S856. Gene #86: 'FAM82A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FAM82A2 MUTATED	1	6	1
FAM82A2 WILD-TYPE	47	47	17

'FAM82A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S857. Gene #86: 'FAM82A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FAM82A2 MUTATED	1	4	0	3	0
FAM82A2 WILD-TYPE	36	27	17	18	13

'FAM82A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S858. Gene #86: 'FAM82A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FAM82A2 MUTATED	7	0	1
FAM82A2 WILD-TYPE	64	27	20

'FAM82A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S859. Gene #86: 'FAM82A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FAM82A2 MUTATED	0	0	1	1	2	3	0
FAM82A2 WILD-TYPE	18	8	9	7	34	22	12

'FAM82A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S860. Gene #86: 'FAM82A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FAM82A2 MUTATED	0	4	1	1	1	0
FAM82A2 WILD-TYPE	17	28	12	31	15	7

'CHGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S861. Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CHGA MUTATED	0	3	4	4
CHGA WILD-TYPE	19	50	26	20

'CHGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S862. Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CHGA MUTATED	2	4	3	2
CHGA WILD-TYPE	33	26	31	24

'CHGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 1

Table S863. Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CHGA MUTATED	3	0	2	3	0
CHGA WILD-TYPE	26	18	11	6	13

Figure S48. Get High-res Image Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CHGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 1

Table S864. Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CHGA MUTATED	4	0	0	3	1
CHGA WILD-TYPE	28	18	12	7	9

'CHGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S865. Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CHGA MUTATED	1	1	3	4	2
CHGA WILD-TYPE	25	19	25	21	18

'CHGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S866. Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CHGA MUTATED	5	5	1
CHGA WILD-TYPE	43	48	17

'CHGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S867. Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CHGA MUTATED	1	4	2	3	1
CHGA WILD-TYPE	36	27	15	18	12

'CHGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S868. Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CHGA MUTATED	6	4	1
CHGA WILD-TYPE	65	23	20

'CHGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S869. Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CHGA MUTATED	2	1	2	0	2	4	0
CHGA WILD-TYPE	16	7	8	8	34	21	12

'CHGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S870. Gene #87: 'CHGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CHGA MUTATED	1	1	2	5	2	0
CHGA WILD-TYPE	16	31	11	27	14	7

'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S871. Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EGR1 MUTATED	2	2	2	1
EGR1 WILD-TYPE	17	51	28	23

'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S872. Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EGR1 MUTATED	2	2	1	2
EGR1 WILD-TYPE	33	28	33	24

'EGR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S873. Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EGR1 MUTATED	3	2	0	1	1
EGR1 WILD-TYPE	26	16	13	8	12

'EGR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S874. Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EGR1 MUTATED	4	3	0	0	0
EGR1 WILD-TYPE	28	15	12	10	10

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S875. Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EGR1 MUTATED	2	0	0	3	2
EGR1 WILD-TYPE	24	20	28	22	18

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S876. Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EGR1 MUTATED	4	3	0
EGR1 WILD-TYPE	44	50	18

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S877. Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EGR1 MUTATED	1	3	2	1	0
EGR1 WILD-TYPE	36	28	15	20	13

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S878. Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EGR1 MUTATED	5	2	0
EGR1 WILD-TYPE	66	25	21

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 1

Table S879. Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EGR1 MUTATED	1	1	2	2	1	0	0
EGR1 WILD-TYPE	17	7	8	6	35	25	12

Figure S49. Get High-res Image Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 1

Table S880. Gene #88: 'EGR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EGR1 MUTATED	1	0	3	3	0	0
EGR1 WILD-TYPE	16	32	10	29	16	7

'OLIG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S881. Gene #89: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OLIG3 MUTATED	3	3	1	3
OLIG3 WILD-TYPE	16	50	29	21

'OLIG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S882. Gene #89: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OLIG3 MUTATED	2	1	4	3
OLIG3 WILD-TYPE	33	29	30	23

'OLIG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S883. Gene #89: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OLIG3 MUTATED	4	2	0	2	1
OLIG3 WILD-TYPE	25	16	13	7	12

'OLIG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S884. Gene #89: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OLIG3 MUTATED	6	2	0	0	1
OLIG3 WILD-TYPE	26	16	12	10	9

'OLIG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S885. Gene #89: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OLIG3 MUTATED	1	1	5	1	2
OLIG3 WILD-TYPE	25	19	23	24	18

'OLIG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S886. Gene #89: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OLIG3 MUTATED	3	7	0
OLIG3 WILD-TYPE	45	46	18

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S887. Gene #89: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OLIG3 MUTATED	4	3	1	1	1
OLIG3 WILD-TYPE	33	28	16	20	12

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S888. Gene #89: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OLIG3 MUTATED	9	1	0
OLIG3 WILD-TYPE	62	26	21

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 1

Table S889. Gene #89: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OLIG3 MUTATED	1	0	2	2	5	0	0
OLIG3 WILD-TYPE	17	8	8	6	31	25	12

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S890. Gene #89: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OLIG3 MUTATED	1	5	2	2	0	0
OLIG3 WILD-TYPE	16	27	11	30	16	7

'C14ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 1

Table S891. Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C14ORF49 MUTATED	1	1	1	5
C14ORF49 WILD-TYPE	18	52	29	19

Figure S50. Get High-res Image Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C14ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S892. Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C14ORF49 MUTATED	3	1	2	2
C14ORF49 WILD-TYPE	32	29	32	24

'C14ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S893. Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
C14ORF49 MUTATED	4	0	1	0	0
C14ORF49 WILD-TYPE	25	18	12	9	13

'C14ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S894. Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
C14ORF49 MUTATED	3	0	0	1	1
C14ORF49 WILD-TYPE	29	18	12	9	9

'C14ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S895. Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C14ORF49 MUTATED	1	1	3	1	2
C14ORF49 WILD-TYPE	25	19	25	24	18

'C14ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S896. Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C14ORF49 MUTATED	1	5	2
C14ORF49 WILD-TYPE	47	48	16

'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S897. Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C14ORF49 MUTATED	2	1	0	4	1
C14ORF49 WILD-TYPE	35	30	17	17	12

'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S898. Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C14ORF49 MUTATED	6	0	2
C14ORF49 WILD-TYPE	65	27	19

'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S899. Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C14ORF49 MUTATED	1	0	0	1	4	1	1
C14ORF49 WILD-TYPE	17	8	10	7	32	24	11

'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S900. Gene #90: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C14ORF49 MUTATED	0	2	2	1	2	1
C14ORF49 WILD-TYPE	17	30	11	31	14	6

'TOB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S901. Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TOB1 MUTATED	1	4	0	1
TOB1 WILD-TYPE	18	49	30	23

'TOB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S902. Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TOB1 MUTATED	2	1	2	1
TOB1 WILD-TYPE	33	29	32	25

'TOB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S903. Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TOB1 MUTATED	1	2	0	1	0
TOB1 WILD-TYPE	28	16	13	8	13

'TOB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S904. Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TOB1 MUTATED	0	2	0	2	0
TOB1 WILD-TYPE	32	16	12	8	10

Figure S51. Get High-res Image Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TOB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S905. Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TOB1 MUTATED	2	1	2	1	0
TOB1 WILD-TYPE	24	19	26	24	20

'TOB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S906. Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TOB1 MUTATED	2	3	1
TOB1 WILD-TYPE	46	50	17

'TOB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S907. Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TOB1 MUTATED	3	1	0	2	0
TOB1 WILD-TYPE	34	30	17	19	13

'TOB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S908. Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TOB1 MUTATED	5	0	1
TOB1 WILD-TYPE	66	27	20

'TOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S909. Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TOB1 MUTATED	0	0	1	0	2	2	1
TOB1 WILD-TYPE	18	8	9	8	34	23	11

'TOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S910. Gene #91: 'TOB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TOB1 MUTATED	0	3	1	1	0	1
TOB1 WILD-TYPE	17	29	12	31	16	6

'MEPCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S911. Gene #92: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MEPCE MUTATED	1	5	3	1
MEPCE WILD-TYPE	18	48	27	23

'MEPCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S912. Gene #92: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MEPCE MUTATED	3	2	4	1
MEPCE WILD-TYPE	32	28	30	25

'MEPCE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S913. Gene #92: 'MEPCE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MEPCE MUTATED	3	1	0	1	0
MEPCE WILD-TYPE	26	17	13	8	13

'MEPCE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S914. Gene #92: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MEPCE MUTATED	3	1	0	1	0
MEPCE WILD-TYPE	29	17	12	9	10

'MEPCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S915. Gene #92: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MEPCE MUTATED	4	3	1	1	1
MEPCE WILD-TYPE	22	17	27	24	19

'MEPCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S916. Gene #92: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MEPCE MUTATED	2	6	2
MEPCE WILD-TYPE	46	47	16

'MEPCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 1

Table S917. Gene #92: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MEPCE MUTATED	3	1	0	5	1
MEPCE WILD-TYPE	34	30	17	16	12

'MEPCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S918. Gene #92: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MEPCE MUTATED	8	1	1
MEPCE WILD-TYPE	63	26	20

'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S919. Gene #92: 'MEPCE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MEPCE MUTATED	0	0	2	1	3	1	2
MEPCE WILD-TYPE	18	8	8	7	33	24	10

'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S920. Gene #92: 'MEPCE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MEPCE MUTATED	2	2	2	1	0	2
MEPCE WILD-TYPE	15	30	11	31	16	5

'TXLNG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 1

Table S921. Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TXLNG MUTATED	0	1	5	1
TXLNG WILD-TYPE	19	52	25	23

Figure S52. Get High-res Image Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TXLNG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S922. Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TXLNG MUTATED	3	0	1	3
TXLNG WILD-TYPE	32	30	33	23

'TXLNG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S923. Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TXLNG MUTATED	2	2	0	1	2
TXLNG WILD-TYPE	27	16	13	8	11

'TXLNG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S924. Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TXLNG MUTATED	4	1	0	0	2
TXLNG WILD-TYPE	28	17	12	10	8

'TXLNG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S925. Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TXLNG MUTATED	1	1	1	1	3
TXLNG WILD-TYPE	25	19	27	24	17

'TXLNG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S926. Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TXLNG MUTATED	2	3	2
TXLNG WILD-TYPE	46	50	16

'TXLNG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S927. Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TXLNG MUTATED	2	4	0	1	0
TXLNG WILD-TYPE	35	27	17	20	13

'TXLNG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S928. Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TXLNG MUTATED	4	0	3
TXLNG WILD-TYPE	67	27	18

'TXLNG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 1

Table S929. Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TXLNG MUTATED	0	1	2	1	0	3	0
TXLNG WILD-TYPE	18	7	8	7	36	22	12

Figure S53. Get High-res Image Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TXLNG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S930. Gene #93: 'TXLNG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TXLNG MUTATED	0	2	1	1	3	0
TXLNG WILD-TYPE	17	30	12	31	13	7

'TTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S931. Gene #94: 'TTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TTK MUTATED	1	3	5	3
TTK WILD-TYPE	18	50	25	21

'TTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S932. Gene #94: 'TTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TTK MUTATED	3	3	4	2
TTK WILD-TYPE	32	27	30	24

'TTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S933. Gene #94: 'TTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TTK MUTATED	2	1	3	2	0
TTK WILD-TYPE	27	17	10	7	13

'TTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S934. Gene #94: 'TTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TTK MUTATED	3	1	2	1	1
TTK WILD-TYPE	29	17	10	9	9

'TTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S935. Gene #94: 'TTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TTK MUTATED	2	3	2	3	2
TTK WILD-TYPE	24	17	26	22	18

'TTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S936. Gene #94: 'TTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TTK MUTATED	5	6	1
TTK WILD-TYPE	43	47	17

'TTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S937. Gene #94: 'TTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TTK MUTATED	3	3	2	3	1
TTK WILD-TYPE	34	28	15	18	12

'TTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S938. Gene #94: 'TTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TTK MUTATED	8	2	2
TTK WILD-TYPE	63	25	19

'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S939. Gene #94: 'TTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TTK MUTATED	2	0	1	0	2	5	1
TTK WILD-TYPE	16	8	9	8	34	20	11

'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S940. Gene #94: 'TTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TTK MUTATED	0	3	1	4	2	1
TTK WILD-TYPE	17	29	12	28	14	6

'TMCO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S941. Gene #95: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TMCO1 MUTATED	1	4	3	0
TMCO1 WILD-TYPE	18	49	27	24

'TMCO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S942. Gene #95: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TMCO1 MUTATED	2	0	3	3
TMCO1 WILD-TYPE	33	30	31	23

'TMCO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0665 (Fisher's exact test), Q value = 1

Table S943. Gene #95: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TMCO1 MUTATED	0	1	2	2	1
TMCO1 WILD-TYPE	29	17	11	7	12

'TMCO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S944. Gene #95: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TMCO1 MUTATED	1	1	3	1	0
TMCO1 WILD-TYPE	31	17	9	9	10

'TMCO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S945. Gene #95: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TMCO1 MUTATED	2	1	1	2	2
TMCO1 WILD-TYPE	24	19	27	23	18

'TMCO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S946. Gene #95: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TMCO1 MUTATED	4	3	1
TMCO1 WILD-TYPE	44	50	17

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S947. Gene #95: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TMCO1 MUTATED	2	3	1	1	1
TMCO1 WILD-TYPE	35	28	16	20	12

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S948. Gene #95: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TMCO1 MUTATED	6	1	1
TMCO1 WILD-TYPE	65	26	20

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S949. Gene #95: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TMCO1 MUTATED	0	1	1	0	3	3	0
TMCO1 WILD-TYPE	18	7	9	8	33	22	12

'TMCO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S950. Gene #95: 'TMCO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TMCO1 MUTATED	1	3	0	2	2	0
TMCO1 WILD-TYPE	16	29	13	30	14	7

'NUDT11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S951. Gene #96: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NUDT11 MUTATED	0	2	4	3
NUDT11 WILD-TYPE	19	51	26	21

'NUDT11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S952. Gene #96: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NUDT11 MUTATED	4	3	2	0
NUDT11 WILD-TYPE	31	27	32	26

'NUDT11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S953. Gene #96: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NUDT11 MUTATED	2	3	0	2	1
NUDT11 WILD-TYPE	27	15	13	7	12

'NUDT11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S954. Gene #96: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NUDT11 MUTATED	3	4	0	1	0
NUDT11 WILD-TYPE	29	14	12	9	10

'NUDT11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S955. Gene #96: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NUDT11 MUTATED	2	1	3	3	0
NUDT11 WILD-TYPE	24	19	25	22	20

'NUDT11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S956. Gene #96: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NUDT11 MUTATED	4	4	1
NUDT11 WILD-TYPE	44	49	17

'NUDT11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S957. Gene #96: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NUDT11 MUTATED	2	2	2	2	1
NUDT11 WILD-TYPE	35	29	15	19	12

'NUDT11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S958. Gene #96: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NUDT11 MUTATED	5	3	1
NUDT11 WILD-TYPE	66	24	20

'NUDT11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S959. Gene #96: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NUDT11 MUTATED	3	0	1	0	3	2	0
NUDT11 WILD-TYPE	15	8	9	8	33	23	12

'NUDT11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S960. Gene #96: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NUDT11 MUTATED	1	2	1	4	1	0
NUDT11 WILD-TYPE	16	30	12	28	15	7

'PTPRF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S961. Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PTPRF MUTATED	4	5	3	1
PTPRF WILD-TYPE	15	48	27	23

'PTPRF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S962. Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PTPRF MUTATED	5	3	4	1
PTPRF WILD-TYPE	30	27	30	25

'PTPRF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S963. Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PTPRF MUTATED	2	2	1	2	2
PTPRF WILD-TYPE	27	16	12	7	11

'PTPRF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S964. Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PTPRF MUTATED	3	2	1	1	2
PTPRF WILD-TYPE	29	16	11	9	8

'PTPRF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 1

Table S965. Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PTPRF MUTATED	2	0	3	7	1
PTPRF WILD-TYPE	24	20	25	18	19

Figure S54. Get High-res Image Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTPRF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 1

Table S966. Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PTPRF MUTATED	10	2	1
PTPRF WILD-TYPE	38	51	17

Figure S55. Get High-res Image Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPRF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S967. Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PTPRF MUTATED	6	2	3	1	1
PTPRF WILD-TYPE	31	29	14	20	12

'PTPRF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S968. Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PTPRF MUTATED	8	4	1
PTPRF WILD-TYPE	63	23	20

'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S969. Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PTPRF MUTATED	3	0	1	2	5	2	0
PTPRF WILD-TYPE	15	8	9	6	31	23	12

'PTPRF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S970. Gene #97: 'PTPRF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PTPRF MUTATED	2	3	0	7	1	0
PTPRF WILD-TYPE	15	29	13	25	15	7

'YTHDF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S971. Gene #98: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
YTHDF1 MUTATED	3	2	2	1
YTHDF1 WILD-TYPE	16	51	28	23

'YTHDF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S972. Gene #98: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
YTHDF1 MUTATED	1	2	1	4
YTHDF1 WILD-TYPE	34	28	33	22

'YTHDF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S973. Gene #98: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
YTHDF1 MUTATED	4	1	0	0	0
YTHDF1 WILD-TYPE	25	17	13	9	13

'YTHDF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S974. Gene #98: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
YTHDF1 MUTATED	4	1	0	0	0
YTHDF1 WILD-TYPE	28	17	12	10	10

'YTHDF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S975. Gene #98: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
YTHDF1 MUTATED	1	2	1	2	2
YTHDF1 WILD-TYPE	25	18	27	23	18

'YTHDF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S976. Gene #98: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
YTHDF1 MUTATED	4	2	2
YTHDF1 WILD-TYPE	44	51	16

'YTHDF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S977. Gene #98: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
YTHDF1 MUTATED	1	3	2	0	2
YTHDF1 WILD-TYPE	36	28	15	21	11

'YTHDF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S978. Gene #98: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
YTHDF1 MUTATED	3	3	2
YTHDF1 WILD-TYPE	68	24	19

'YTHDF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S979. Gene #98: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
YTHDF1 MUTATED	1	1	0	1	1	3	1
YTHDF1 WILD-TYPE	17	7	10	7	35	22	11

'YTHDF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S980. Gene #98: 'YTHDF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
YTHDF1 MUTATED	2	0	1	2	3	0
YTHDF1 WILD-TYPE	15	32	12	30	13	7

'AAMP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S981. Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AAMP MUTATED	2	2	1	1
AAMP WILD-TYPE	17	51	29	23

'AAMP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S982. Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AAMP MUTATED	2	3	0	1
AAMP WILD-TYPE	33	27	34	25

'AAMP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S983. Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AAMP MUTATED	2	0	1	1	0
AAMP WILD-TYPE	27	18	12	8	13

'AAMP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S984. Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AAMP MUTATED	2	0	0	1	1
AAMP WILD-TYPE	30	18	12	9	9

'AAMP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 1

Table S985. Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AAMP MUTATED	0	2	0	3	1
AAMP WILD-TYPE	26	18	28	22	19

'AAMP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 1

Table S986. Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AAMP MUTATED	4	0	2
AAMP WILD-TYPE	44	53	16

Figure S56. Get High-res Image Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AAMP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S987. Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AAMP MUTATED	3	0	1	0	2
AAMP WILD-TYPE	34	31	16	21	11

'AAMP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S988. Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AAMP MUTATED	2	2	2
AAMP WILD-TYPE	69	25	19

'AAMP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S989. Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AAMP MUTATED	1	0	0	1	1	2	1
AAMP WILD-TYPE	17	8	10	7	35	23	11

'AAMP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S990. Gene #99: 'AAMP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AAMP MUTATED	1	0	0	3	2	0
AAMP WILD-TYPE	16	32	13	29	14	7

'RAI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S991. Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RAI1 MUTATED	1	2	2	1
RAI1 WILD-TYPE	18	51	28	23

'RAI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S992. Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RAI1 MUTATED	3	2	1	0
RAI1 WILD-TYPE	32	28	33	26

'RAI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S993. Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RAI1 MUTATED	3	0	0	1	0
RAI1 WILD-TYPE	26	18	13	8	13

'RAI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S994. Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RAI1 MUTATED	4	0	0	0	0
RAI1 WILD-TYPE	28	18	12	10	10

'RAI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00249 (Fisher's exact test), Q value = 1

Table S995. Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RAI1 MUTATED	0	1	0	5	0
RAI1 WILD-TYPE	26	19	28	20	20

Figure S57. Get High-res Image Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RAI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S996. Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RAI1 MUTATED	5	1	0
RAI1 WILD-TYPE	43	52	18

'RAI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S997. Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RAI1 MUTATED	2	0	2	2	0
RAI1 WILD-TYPE	35	31	15	19	13

'RAI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S998. Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RAI1 MUTATED	3	3	0
RAI1 WILD-TYPE	68	24	21

'RAI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S999. Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RAI1 MUTATED	2	0	2	0	0	2	0
RAI1 WILD-TYPE	16	8	8	8	36	23	12

'RAI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1000. Gene #100: 'RAI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RAI1 MUTATED	0	1	0	5	0	0
RAI1 WILD-TYPE	17	31	13	27	16	7

'PDZD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 1

Table S1001. Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PDZD7 MUTATED	0	1	5	1
PDZD7 WILD-TYPE	19	52	25	23

Figure S58. Get High-res Image Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PDZD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 1

Table S1002. Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PDZD7 MUTATED	2	1	0	4
PDZD7 WILD-TYPE	33	29	34	22

'PDZD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1003. Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PDZD7 MUTATED	1	1	1	1	2
PDZD7 WILD-TYPE	28	17	12	8	11

'PDZD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1004. Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PDZD7 MUTATED	3	1	1	0	1
PDZD7 WILD-TYPE	29	17	11	10	9

'PDZD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 1

Table S1005. Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PDZD7 MUTATED	1	0	0	2	4
PDZD7 WILD-TYPE	25	20	28	23	16

Figure S59. Get High-res Image Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PDZD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1006. Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PDZD7 MUTATED	2	4	1
PDZD7 WILD-TYPE	46	49	17

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00889 (Fisher's exact test), Q value = 1

Table S1007. Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PDZD7 MUTATED	0	6	0	1	0
PDZD7 WILD-TYPE	37	25	17	20	13

Figure S60. Get High-res Image Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1008. Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PDZD7 MUTATED	6	1	0
PDZD7 WILD-TYPE	65	26	21

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S1009. Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PDZD7 MUTATED	0	1	1	2	0	2	1
PDZD7 WILD-TYPE	18	7	9	6	36	23	11

Figure S61. Get High-res Image Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PDZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 1

Table S1010. Gene #101: 'PDZD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PDZD7 MUTATED	1	0	3	2	1	0
PDZD7 WILD-TYPE	16	32	10	30	15	7

'F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S1011. Gene #102: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
F8 MUTATED	3	5	2	2
F8 WILD-TYPE	16	48	28	22

'F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1012. Gene #102: 'F8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
F8 MUTATED	7	1	2	2
F8 WILD-TYPE	28	29	32	24

'F8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1013. Gene #102: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
F8 MUTATED	4	1	0	2	1
F8 WILD-TYPE	25	17	13	7	12

'F8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1014. Gene #102: 'F8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
F8 MUTATED	5	0	1	1	1
F8 WILD-TYPE	27	18	11	9	9

'F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1015. Gene #102: 'F8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
F8 MUTATED	3	1	4	3	1
F8 WILD-TYPE	23	19	24	22	19

'F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1016. Gene #102: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
F8 MUTATED	6	6	0
F8 WILD-TYPE	42	47	18

'F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1017. Gene #102: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
F8 MUTATED	4	3	0	4	1
F8 WILD-TYPE	33	28	17	17	12

'F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1018. Gene #102: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
F8 MUTATED	8	2	2
F8 WILD-TYPE	63	25	19

'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1019. Gene #102: 'F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
F8 MUTATED	2	2	2	0	4	2	0
F8 WILD-TYPE	16	6	8	8	32	23	12

'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1020. Gene #102: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
F8 MUTATED	1	5	0	4	2	0
F8 WILD-TYPE	16	27	13	28	14	7

'CACNA1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S1021. Gene #103: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CACNA1D MUTATED	3	6	3	4
CACNA1D WILD-TYPE	16	47	27	20

'CACNA1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1022. Gene #103: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CACNA1D MUTATED	7	3	4	2
CACNA1D WILD-TYPE	28	27	30	24

'CACNA1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1023. Gene #103: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CACNA1D MUTATED	2	3	2	3	1
CACNA1D WILD-TYPE	27	15	11	6	12

'CACNA1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1024. Gene #103: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CACNA1D MUTATED	3	3	1	2	2
CACNA1D WILD-TYPE	29	15	11	8	8

'CACNA1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1025. Gene #103: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CACNA1D MUTATED	4	1	4	6	1
CACNA1D WILD-TYPE	22	19	24	19	19

'CACNA1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1026. Gene #103: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CACNA1D MUTATED	6	9	1
CACNA1D WILD-TYPE	42	44	17

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1027. Gene #103: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CACNA1D MUTATED	6	2	4	4	0
CACNA1D WILD-TYPE	31	29	13	17	13

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S1028. Gene #103: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CACNA1D MUTATED	12	3	1
CACNA1D WILD-TYPE	59	24	20

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1029. Gene #103: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CACNA1D MUTATED	3	2	1	0	8	2	0
CACNA1D WILD-TYPE	15	6	9	8	28	23	12

'CACNA1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1030. Gene #103: 'CACNA1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CACNA1D MUTATED	2	6	0	6	1	1
CACNA1D WILD-TYPE	15	26	13	26	15	6

'IFNGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1031. Gene #104: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IFNGR2 MUTATED	1	5	0	1
IFNGR2 WILD-TYPE	18	48	30	23

'IFNGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S1032. Gene #104: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IFNGR2 MUTATED	4	1	2	0
IFNGR2 WILD-TYPE	31	29	32	26

'IFNGR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S1033. Gene #104: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
IFNGR2 MUTATED	2	1	0	1	1
IFNGR2 WILD-TYPE	27	17	13	8	12

'IFNGR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1034. Gene #104: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
IFNGR2 MUTATED	2	1	1	1	0
IFNGR2 WILD-TYPE	30	17	11	9	10

'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S1035. Gene #104: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IFNGR2 MUTATED	2	1	1	3	0
IFNGR2 WILD-TYPE	24	19	27	22	20

'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0564 (Fisher's exact test), Q value = 1

Table S1036. Gene #104: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IFNGR2 MUTATED	6	1	0
IFNGR2 WILD-TYPE	42	52	18

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1037. Gene #104: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IFNGR2 MUTATED	4	0	2	0	1
IFNGR2 WILD-TYPE	33	31	15	21	12

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1038. Gene #104: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IFNGR2 MUTATED	5	1	1
IFNGR2 WILD-TYPE	66	26	20

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S1039. Gene #104: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IFNGR2 MUTATED	0	0	0	0	4	3	0
IFNGR2 WILD-TYPE	18	8	10	8	32	22	12

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1040. Gene #104: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IFNGR2 MUTATED	0	3	0	3	1	0
IFNGR2 WILD-TYPE	17	29	13	29	15	7

'ALS2CR11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S1041. Gene #105: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ALS2CR11 MUTATED	1	3	3	1
ALS2CR11 WILD-TYPE	18	50	27	23

'ALS2CR11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S1042. Gene #105: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ALS2CR11 MUTATED	1	2	3	2
ALS2CR11 WILD-TYPE	34	28	31	24

'ALS2CR11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1043. Gene #105: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ALS2CR11 MUTATED	2	2	0	1	2
ALS2CR11 WILD-TYPE	27	16	13	8	11

'ALS2CR11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1044. Gene #105: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ALS2CR11 MUTATED	3	3	1	0	0
ALS2CR11 WILD-TYPE	29	15	11	10	10

'ALS2CR11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S1045. Gene #105: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ALS2CR11 MUTATED	2	0	1	3	2
ALS2CR11 WILD-TYPE	24	20	27	22	18

'ALS2CR11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S1046. Gene #105: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ALS2CR11 MUTATED	4	4	0
ALS2CR11 WILD-TYPE	44	49	18

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1047. Gene #105: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ALS2CR11 MUTATED	2	2	3	1	0
ALS2CR11 WILD-TYPE	35	29	14	20	13

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1048. Gene #105: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ALS2CR11 MUTATED	6	2	0
ALS2CR11 WILD-TYPE	65	25	21

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 1

Table S1049. Gene #105: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ALS2CR11 MUTATED	1	1	2	2	2	0	0
ALS2CR11 WILD-TYPE	17	7	8	6	34	25	12

'ALS2CR11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S1050. Gene #105: 'ALS2CR11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ALS2CR11 MUTATED	2	1	2	3	0	0
ALS2CR11 WILD-TYPE	15	31	11	29	16	7

'OSBPL1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1051. Gene #106: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OSBPL1A MUTATED	1	4	3	1
OSBPL1A WILD-TYPE	18	49	27	23

'OSBPL1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1052. Gene #106: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OSBPL1A MUTATED	4	0	4	1
OSBPL1A WILD-TYPE	31	30	30	25

'OSBPL1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1053. Gene #106: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OSBPL1A MUTATED	2	0	0	2	2
OSBPL1A WILD-TYPE	27	18	13	7	11

'OSBPL1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S1054. Gene #106: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OSBPL1A MUTATED	4	1	0	1	0
OSBPL1A WILD-TYPE	28	17	12	9	10

'OSBPL1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S1055. Gene #106: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OSBPL1A MUTATED	5	1	1	1	1
OSBPL1A WILD-TYPE	21	19	27	24	19

'OSBPL1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S1056. Gene #106: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OSBPL1A MUTATED	3	5	1
OSBPL1A WILD-TYPE	45	48	17

'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1057. Gene #106: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OSBPL1A MUTATED	4	2	0	3	0
OSBPL1A WILD-TYPE	33	29	17	18	13

'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1058. Gene #106: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OSBPL1A MUTATED	8	1	0
OSBPL1A WILD-TYPE	63	26	21

'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1059. Gene #106: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OSBPL1A MUTATED	1	0	1	0	3	2	1
OSBPL1A WILD-TYPE	17	8	9	8	33	23	11

'OSBPL1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1060. Gene #106: 'OSBPL1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OSBPL1A MUTATED	3	3	0	2	0	0
OSBPL1A WILD-TYPE	14	29	13	30	16	7

'SLC24A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1061. Gene #107: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC24A1 MUTATED	1	3	1	1
SLC24A1 WILD-TYPE	18	50	29	23

'SLC24A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S1062. Gene #107: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC24A1 MUTATED	2	0	1	3
SLC24A1 WILD-TYPE	33	30	33	23

'SLC24A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S1063. Gene #107: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLC24A1 MUTATED	3	0	0	0	0
SLC24A1 WILD-TYPE	26	18	13	9	13

'SLC24A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1064. Gene #107: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLC24A1 MUTATED	2	0	0	1	0
SLC24A1 WILD-TYPE	30	18	12	9	10

'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1065. Gene #107: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC24A1 MUTATED	2	1	1	0	2
SLC24A1 WILD-TYPE	24	19	27	25	18

'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0549 (Fisher's exact test), Q value = 1

Table S1066. Gene #107: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC24A1 MUTATED	0	4	2
SLC24A1 WILD-TYPE	48	49	16

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1067. Gene #107: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC24A1 MUTATED	2	2	0	1	1
SLC24A1 WILD-TYPE	35	29	17	20	12

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S1068. Gene #107: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC24A1 MUTATED	4	0	2
SLC24A1 WILD-TYPE	67	27	19

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1069. Gene #107: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC24A1 MUTATED	0	0	0	1	3	2	0
SLC24A1 WILD-TYPE	18	8	10	7	33	23	12

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1070. Gene #107: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC24A1 MUTATED	0	2	2	0	2	0
SLC24A1 WILD-TYPE	17	30	11	32	14	7

'PDZD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1071. Gene #108: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PDZD2 MUTATED	1	5	5	2
PDZD2 WILD-TYPE	18	48	25	22

'PDZD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1072. Gene #108: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PDZD2 MUTATED	3	3	5	2
PDZD2 WILD-TYPE	32	27	29	24

'PDZD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S1073. Gene #108: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PDZD2 MUTATED	4	4	2	2	0
PDZD2 WILD-TYPE	25	14	11	7	13

'PDZD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S1074. Gene #108: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PDZD2 MUTATED	4	4	0	2	2
PDZD2 WILD-TYPE	28	14	12	8	8

'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S1075. Gene #108: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PDZD2 MUTATED	5	2	1	4	1
PDZD2 WILD-TYPE	21	18	27	21	19

'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S1076. Gene #108: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PDZD2 MUTATED	6	5	2
PDZD2 WILD-TYPE	42	48	16

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S1077. Gene #108: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PDZD2 MUTATED	4	1	3	3	2
PDZD2 WILD-TYPE	33	30	14	18	11

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1078. Gene #108: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PDZD2 MUTATED	9	2	2
PDZD2 WILD-TYPE	62	25	19

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S1079. Gene #108: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PDZD2 MUTATED	1	0	2	0	5	4	0
PDZD2 WILD-TYPE	17	8	8	8	31	21	12

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1080. Gene #108: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PDZD2 MUTATED	1	3	1	4	3	0
PDZD2 WILD-TYPE	16	29	12	28	13	7

'CIR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S1081. Gene #109: 'CIR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CIR1 MUTATED	0	4	1	0
CIR1 WILD-TYPE	19	49	29	24

'CIR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1082. Gene #109: 'CIR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CIR1 MUTATED	3	0	2	0
CIR1 WILD-TYPE	32	30	32	26

'CIR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1083. Gene #109: 'CIR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CIR1 MUTATED	0	1	0	1	2
CIR1 WILD-TYPE	29	17	13	8	11

'CIR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1084. Gene #109: 'CIR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CIR1 MUTATED	1	1	1	0	1
CIR1 WILD-TYPE	31	17	11	10	9

'CIR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1085. Gene #109: 'CIR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CIR1 MUTATED	1	0	2	2	0
CIR1 WILD-TYPE	25	20	26	23	20

'CIR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1086. Gene #109: 'CIR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CIR1 MUTATED	3	2	0
CIR1 WILD-TYPE	45	51	18

'CIR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1087. Gene #109: 'CIR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CIR1 MUTATED	3	0	1	1	0
CIR1 WILD-TYPE	34	31	16	20	13

'CIR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1088. Gene #109: 'CIR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CIR1 MUTATED	4	1	0
CIR1 WILD-TYPE	67	26	21

'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1089. Gene #109: 'CIR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CIR1 MUTATED	1	0	1	0	2	1	0
CIR1 WILD-TYPE	17	8	9	8	34	24	12

'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S1090. Gene #109: 'CIR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CIR1 MUTATED	0	3	0	2	0	0
CIR1 WILD-TYPE	17	29	13	30	16	7

'ZNF184 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1091. Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF184 MUTATED	1	5	3	1
ZNF184 WILD-TYPE	18	48	27	23

'ZNF184 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S1092. Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF184 MUTATED	3	3	4	0
ZNF184 WILD-TYPE	32	27	30	26

'ZNF184 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1093. Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF184 MUTATED	4	0	0	1	0
ZNF184 WILD-TYPE	25	18	13	8	13

'ZNF184 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S1094. Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF184 MUTATED	4	0	0	1	0
ZNF184 WILD-TYPE	28	18	12	9	10

'ZNF184 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1095. Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF184 MUTATED	4	1	1	4	0
ZNF184 WILD-TYPE	22	19	27	21	20

'ZNF184 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1096. Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF184 MUTATED	5	4	1
ZNF184 WILD-TYPE	43	49	17

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0243 (Fisher's exact test), Q value = 1

Table S1097. Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF184 MUTATED	3	0	2	5	0
ZNF184 WILD-TYPE	34	31	15	16	13

Figure S62. Get High-res Image Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1098. Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF184 MUTATED	6	3	1
ZNF184 WILD-TYPE	65	24	20

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1099. Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF184 MUTATED	2	0	1	0	6	0	1
ZNF184 WILD-TYPE	16	8	9	8	30	25	11

'ZNF184 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S1100. Gene #110: 'ZNF184 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF184 MUTATED	1	2	2	4	0	1
ZNF184 WILD-TYPE	16	30	11	28	16	6

'RBM15B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1101. Gene #111: 'RBM15B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RBM15B MUTATED	1	3	2	1
RBM15B WILD-TYPE	18	50	28	23

'RBM15B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S1102. Gene #111: 'RBM15B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RBM15B MUTATED	3	1	2	1
RBM15B WILD-TYPE	32	29	32	25

'RBM15B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1103. Gene #111: 'RBM15B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RBM15B MUTATED	3	2	0	0	1
RBM15B WILD-TYPE	26	16	13	9	12

'RBM15B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1104. Gene #111: 'RBM15B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RBM15B MUTATED	3	2	1	0	0
RBM15B WILD-TYPE	29	16	11	10	10

'RBM15B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S1105. Gene #111: 'RBM15B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RBM15B MUTATED	2	0	3	1	1
RBM15B WILD-TYPE	24	20	25	24	19

'RBM15B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1106. Gene #111: 'RBM15B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RBM15B MUTATED	2	5	0
RBM15B WILD-TYPE	46	48	18

'RBM15B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S1107. Gene #111: 'RBM15B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RBM15B MUTATED	5	1	0	1	0
RBM15B WILD-TYPE	32	30	17	20	13

'RBM15B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1108. Gene #111: 'RBM15B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RBM15B MUTATED	6	1	0
RBM15B WILD-TYPE	65	26	21

'RBM15B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1109. Gene #111: 'RBM15B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RBM15B MUTATED	1	0	0	1	5	0	0
RBM15B WILD-TYPE	17	8	10	7	31	25	12

'RBM15B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S1110. Gene #111: 'RBM15B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RBM15B MUTATED	0	5	1	1	0	0
RBM15B WILD-TYPE	17	27	12	31	16	7

'ATRX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S1111. Gene #112: 'ATRX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ATRX MUTATED	2	7	4	4
ATRX WILD-TYPE	17	46	26	20

'ATRX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1112. Gene #112: 'ATRX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ATRX MUTATED	5	6	5	1
ATRX WILD-TYPE	30	24	29	25

'ATRX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1113. Gene #112: 'ATRX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ATRX MUTATED	3	3	0	1	2
ATRX WILD-TYPE	26	15	13	8	11

'ATRX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1114. Gene #112: 'ATRX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ATRX MUTATED	4	3	1	0	1
ATRX WILD-TYPE	28	15	11	10	9

'ATRX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1115. Gene #112: 'ATRX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ATRX MUTATED	3	2	3	6	3
ATRX WILD-TYPE	23	18	25	19	17

'ATRX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S1116. Gene #112: 'ATRX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ATRX MUTATED	6	9	2
ATRX WILD-TYPE	42	44	16

'ATRX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1117. Gene #112: 'ATRX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ATRX MUTATED	6	4	3	4	0
ATRX WILD-TYPE	31	27	14	17	13

'ATRX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S1118. Gene #112: 'ATRX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ATRX MUTATED	11	4	2
ATRX WILD-TYPE	60	23	19

'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.995 (Fisher's exact test), Q value = 1

Table S1119. Gene #112: 'ATRX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ATRX MUTATED	2	1	2	1	5	4	2
ATRX WILD-TYPE	16	7	8	7	31	21	10

'ATRX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S1120. Gene #112: 'ATRX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ATRX MUTATED	1	5	3	6	0	2
ATRX WILD-TYPE	16	27	10	26	16	5

'SBNO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1121. Gene #113: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SBNO1 MUTATED	2	4	2	3
SBNO1 WILD-TYPE	17	49	28	21

'SBNO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1122. Gene #113: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SBNO1 MUTATED	4	2	2	3
SBNO1 WILD-TYPE	31	28	32	23

'SBNO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1123. Gene #113: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SBNO1 MUTATED	2	2	2	1	0
SBNO1 WILD-TYPE	27	16	11	8	13

'SBNO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S1124. Gene #113: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SBNO1 MUTATED	2	2	0	2	1
SBNO1 WILD-TYPE	30	16	12	8	9

'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S1125. Gene #113: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SBNO1 MUTATED	3	0	2	3	3
SBNO1 WILD-TYPE	23	20	26	22	17

'SBNO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S1126. Gene #113: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SBNO1 MUTATED	4	7	0
SBNO1 WILD-TYPE	44	46	18

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1127. Gene #113: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SBNO1 MUTATED	4	3	3	1	0
SBNO1 WILD-TYPE	33	28	14	20	13

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S1128. Gene #113: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SBNO1 MUTATED	8	3	0
SBNO1 WILD-TYPE	63	24	21

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1129. Gene #113: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SBNO1 MUTATED	2	1	0	0	5	3	0
SBNO1 WILD-TYPE	16	7	10	8	31	22	12

'SBNO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S1130. Gene #113: 'SBNO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SBNO1 MUTATED	0	4	2	3	2	0
SBNO1 WILD-TYPE	17	28	11	29	14	7

'APOBEC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S1131. Gene #114: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
APOBEC4 MUTATED	2	4	0	0
APOBEC4 WILD-TYPE	17	49	30	24

'APOBEC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S1132. Gene #114: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
APOBEC4 MUTATED	2	0	4	0
APOBEC4 WILD-TYPE	33	30	30	26

'APOBEC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1133. Gene #114: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
APOBEC4 MUTATED	0	1	1	1	0
APOBEC4 WILD-TYPE	29	17	12	8	13

'APOBEC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1134. Gene #114: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
APOBEC4 MUTATED	0	1	1	1	0
APOBEC4 WILD-TYPE	32	17	11	9	10

'APOBEC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 1

Table S1135. Gene #114: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
APOBEC4 MUTATED	3	0	3	0	0
APOBEC4 WILD-TYPE	23	20	25	25	20

'APOBEC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1136. Gene #114: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
APOBEC4 MUTATED	2	4	0
APOBEC4 WILD-TYPE	46	49	18

'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S1137. Gene #114: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
APOBEC4 MUTATED	2	1	0	3	0
APOBEC4 WILD-TYPE	35	30	17	18	13

'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1138. Gene #114: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
APOBEC4 MUTATED	5	1	0
APOBEC4 WILD-TYPE	66	26	21

'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1139. Gene #114: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
APOBEC4 MUTATED	1	1	1	0	3	0	0
APOBEC4 WILD-TYPE	17	7	9	8	33	25	12

'APOBEC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1140. Gene #114: 'APOBEC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
APOBEC4 MUTATED	2	2	1	1	0	0
APOBEC4 WILD-TYPE	15	30	12	31	16	7

'ST6GALNAC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S1141. Gene #115: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ST6GALNAC5 MUTATED	1	4	4	3
ST6GALNAC5 WILD-TYPE	18	49	26	21

'ST6GALNAC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1142. Gene #115: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ST6GALNAC5 MUTATED	5	2	3	2
ST6GALNAC5 WILD-TYPE	30	28	31	24

'ST6GALNAC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1143. Gene #115: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ST6GALNAC5 MUTATED	3	3	1	2	1
ST6GALNAC5 WILD-TYPE	26	15	12	7	12

'ST6GALNAC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 1

Table S1144. Gene #115: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ST6GALNAC5 MUTATED	4	3	1	1	1
ST6GALNAC5 WILD-TYPE	28	15	11	9	9

'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1145. Gene #115: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ST6GALNAC5 MUTATED	3	2	3	2	2
ST6GALNAC5 WILD-TYPE	23	18	25	23	18

'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S1146. Gene #115: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ST6GALNAC5 MUTATED	5	6	1
ST6GALNAC5 WILD-TYPE	43	47	17

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S1147. Gene #115: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ST6GALNAC5 MUTATED	3	3	2	2	2
ST6GALNAC5 WILD-TYPE	34	28	15	19	11

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S1148. Gene #115: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ST6GALNAC5 MUTATED	8	3	1
ST6GALNAC5 WILD-TYPE	63	24	20

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1149. Gene #115: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ST6GALNAC5 MUTATED	2	0	2	1	4	1	2
ST6GALNAC5 WILD-TYPE	16	8	8	7	32	24	10

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S1150. Gene #115: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ST6GALNAC5 MUTATED	1	4	2	4	0	1
ST6GALNAC5 WILD-TYPE	16	28	11	28	16	6

'OFD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S1151. Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OFD1 MUTATED	1	2	4	0
OFD1 WILD-TYPE	18	51	26	24

'OFD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1152. Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OFD1 MUTATED	1	1	2	3
OFD1 WILD-TYPE	34	29	32	23

'OFD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 1

Table S1153. Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OFD1 MUTATED	0	2	3	0	1
OFD1 WILD-TYPE	29	16	10	9	12

Figure S63. Get High-res Image Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'OFD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 1

Table S1154. Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OFD1 MUTATED	0	2	2	0	2
OFD1 WILD-TYPE	32	16	10	10	8

Figure S64. Get High-res Image Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OFD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S1155. Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OFD1 MUTATED	1	0	2	1	3
OFD1 WILD-TYPE	25	20	26	24	17

'OFD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1156. Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OFD1 MUTATED	3	3	1
OFD1 WILD-TYPE	45	50	17

'OFD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1157. Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OFD1 MUTATED	3	4	0	0	0
OFD1 WILD-TYPE	34	27	17	21	13

'OFD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1158. Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OFD1 MUTATED	5	1	1
OFD1 WILD-TYPE	66	26	20

'OFD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S1159. Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OFD1 MUTATED	0	0	1	2	2	2	0
OFD1 WILD-TYPE	18	8	9	6	34	23	12

'OFD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S1160. Gene #116: 'OFD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OFD1 MUTATED	1	1	1	2	2	0
OFD1 WILD-TYPE	16	31	12	30	14	7

'NAP1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S1161. Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NAP1L2 MUTATED	2	4	1	1
NAP1L2 WILD-TYPE	17	49	29	23

'NAP1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1162. Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NAP1L2 MUTATED	2	0	5	1
NAP1L2 WILD-TYPE	33	30	29	25

'NAP1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S1163. Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NAP1L2 MUTATED	1	2	2	1	0
NAP1L2 WILD-TYPE	28	16	11	8	13

'NAP1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1164. Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NAP1L2 MUTATED	2	2	2	0	0
NAP1L2 WILD-TYPE	30	16	10	10	10

'NAP1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 1

Table S1165. Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NAP1L2 MUTATED	1	0	6	1	0
NAP1L2 WILD-TYPE	25	20	22	24	20

Figure S65. Get High-res Image Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NAP1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S1166. Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NAP1L2 MUTATED	2	6	0
NAP1L2 WILD-TYPE	46	47	18

'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S1167. Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NAP1L2 MUTATED	3	3	0	2	0
NAP1L2 WILD-TYPE	34	28	17	19	13

'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0882 (Fisher's exact test), Q value = 1

Table S1168. Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NAP1L2 MUTATED	8	0	0
NAP1L2 WILD-TYPE	63	27	21

'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S1169. Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NAP1L2 MUTATED	0	2	2	0	3	1	0
NAP1L2 WILD-TYPE	18	6	8	8	33	24	12

'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S1170. Gene #117: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NAP1L2 MUTATED	1	5	1	1	0	0
NAP1L2 WILD-TYPE	16	27	12	31	16	7

'AFTPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1171. Gene #118: 'AFTPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AFTPH MUTATED	0	4	4	1
AFTPH WILD-TYPE	19	49	26	23

'AFTPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1172. Gene #118: 'AFTPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AFTPH MUTATED	3	3	1	2
AFTPH WILD-TYPE	32	27	33	24

'AFTPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S1173. Gene #118: 'AFTPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AFTPH MUTATED	1	1	2	2	1
AFTPH WILD-TYPE	28	17	11	7	12

'AFTPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S1174. Gene #118: 'AFTPH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AFTPH MUTATED	2	2	1	1	1
AFTPH WILD-TYPE	30	16	11	9	9

'AFTPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1175. Gene #118: 'AFTPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AFTPH MUTATED	2	3	1	2	1
AFTPH WILD-TYPE	24	17	27	23	19

'AFTPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S1176. Gene #118: 'AFTPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AFTPH MUTATED	4	3	2
AFTPH WILD-TYPE	44	50	16

'AFTPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1177. Gene #118: 'AFTPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AFTPH MUTATED	1	3	0	3	2
AFTPH WILD-TYPE	36	28	17	18	11

'AFTPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1178. Gene #118: 'AFTPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AFTPH MUTATED	5	2	2
AFTPH WILD-TYPE	66	25	19

'AFTPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1179. Gene #118: 'AFTPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AFTPH MUTATED	1	1	1	2	1	2	1
AFTPH WILD-TYPE	17	7	9	6	35	23	11

'AFTPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S1180. Gene #118: 'AFTPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AFTPH MUTATED	1	2	1	3	1	1
AFTPH WILD-TYPE	16	30	12	29	15	6

'SYNCRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S1181. Gene #119: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SYNCRIP MUTATED	0	1	3	1
SYNCRIP WILD-TYPE	19	52	27	23

'SYNCRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1182. Gene #119: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SYNCRIP MUTATED	2	2	1	0
SYNCRIP WILD-TYPE	33	28	33	26

'SYNCRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1183. Gene #119: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SYNCRIP MUTATED	1	1	0	1	0
SYNCRIP WILD-TYPE	28	17	13	8	13

'SYNCRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1184. Gene #119: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SYNCRIP MUTATED	2	1	0	0	0
SYNCRIP WILD-TYPE	30	17	12	10	10

'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S1185. Gene #119: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SYNCRIP MUTATED	0	0	2	3	0
SYNCRIP WILD-TYPE	26	20	26	22	20

'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1186. Gene #119: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SYNCRIP MUTATED	3	1	1
SYNCRIP WILD-TYPE	45	52	17

'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S1187. Gene #119: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SYNCRIP MUTATED	0	2	1	2	0
SYNCRIP WILD-TYPE	37	29	16	19	13

'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S1188. Gene #119: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SYNCRIP MUTATED	2	2	1
SYNCRIP WILD-TYPE	69	25	20

'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1189. Gene #119: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SYNCRIP MUTATED	0	0	1	1	2	1	0
SYNCRIP WILD-TYPE	18	8	9	7	34	24	12

'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1190. Gene #119: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SYNCRIP MUTATED	0	0	1	3	1	0
SYNCRIP WILD-TYPE	17	32	12	29	15	7

'RNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1191. Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RNF43 MUTATED	0	4	1	4
RNF43 WILD-TYPE	19	49	29	20

'RNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00842 (Fisher's exact test), Q value = 1

Table S1192. Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RNF43 MUTATED	7	0	1	1
RNF43 WILD-TYPE	28	30	33	25

Figure S66. Get High-res Image Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1193. Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RNF43 MUTATED	5	0	0	1	0
RNF43 WILD-TYPE	24	18	13	8	13

'RNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1194. Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RNF43 MUTATED	5	0	0	1	0
RNF43 WILD-TYPE	27	18	12	9	10

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1195. Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RNF43 MUTATED	3	0	2	2	2
RNF43 WILD-TYPE	23	20	26	23	18

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1196. Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RNF43 MUTATED	2	7	0
RNF43 WILD-TYPE	46	46	18

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S1197. Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RNF43 MUTATED	5	2	0	2	0
RNF43 WILD-TYPE	32	29	17	19	13

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0375 (Fisher's exact test), Q value = 1

Table S1198. Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RNF43 MUTATED	9	0	0
RNF43 WILD-TYPE	62	27	21

Figure S67. Get High-res Image Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S1199. Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RNF43 MUTATED	0	1	1	0	5	2	0
RNF43 WILD-TYPE	18	7	9	8	31	23	12

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S1200. Gene #120: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RNF43 MUTATED	1	3	3	2	0	0
RNF43 WILD-TYPE	16	29	10	30	16	7

'PRRG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0501 (Fisher's exact test), Q value = 1

Table S1201. Gene #121: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PRRG1 MUTATED	2	0	2	2
PRRG1 WILD-TYPE	17	53	28	22

'PRRG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S1202. Gene #121: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PRRG1 MUTATED	0	1	4	1
PRRG1 WILD-TYPE	35	29	30	25

'PRRG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1203. Gene #121: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PRRG1 MUTATED	2	2	2	0	0
PRRG1 WILD-TYPE	27	16	11	9	13

'PRRG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1204. Gene #121: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PRRG1 MUTATED	2	2	1	0	1
PRRG1 WILD-TYPE	30	16	11	10	9

'PRRG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S1205. Gene #121: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PRRG1 MUTATED	0	1	3	1	1
PRRG1 WILD-TYPE	26	19	25	24	19

'PRRG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1206. Gene #121: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PRRG1 MUTATED	1	5	0
PRRG1 WILD-TYPE	47	48	18

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S1207. Gene #121: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PRRG1 MUTATED	3	2	1	0	0
PRRG1 WILD-TYPE	34	29	16	21	13

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1208. Gene #121: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PRRG1 MUTATED	5	1	0
PRRG1 WILD-TYPE	66	26	21

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1209. Gene #121: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PRRG1 MUTATED	1	1	0	0	2	2	0
PRRG1 WILD-TYPE	17	7	10	8	34	23	12

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S1210. Gene #121: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PRRG1 MUTATED	1	3	0	1	1	0
PRRG1 WILD-TYPE	16	29	13	31	15	7

'HSD17B7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1211. Gene #122: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HSD17B7 MUTATED	1	2	4	1
HSD17B7 WILD-TYPE	18	51	26	23

'HSD17B7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1212. Gene #122: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HSD17B7 MUTATED	2	3	3	0
HSD17B7 WILD-TYPE	33	27	31	26

'HSD17B7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1213. Gene #122: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HSD17B7 MUTATED	2	1	1	2	1
HSD17B7 WILD-TYPE	27	17	12	7	12

'HSD17B7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S1214. Gene #122: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HSD17B7 MUTATED	2	1	1	2	1
HSD17B7 WILD-TYPE	30	17	11	8	9

'HSD17B7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S1215. Gene #122: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HSD17B7 MUTATED	4	2	1	1	0
HSD17B7 WILD-TYPE	22	18	27	24	20

'HSD17B7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S1216. Gene #122: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HSD17B7 MUTATED	2	3	3
HSD17B7 WILD-TYPE	46	50	15

'HSD17B7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1217. Gene #122: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HSD17B7 MUTATED	3	1	1	2	1
HSD17B7 WILD-TYPE	34	30	16	19	12

'HSD17B7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S1218. Gene #122: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HSD17B7 MUTATED	4	1	3
HSD17B7 WILD-TYPE	67	26	18

'HSD17B7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1219. Gene #122: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HSD17B7 MUTATED	1	0	0	0	3	2	1
HSD17B7 WILD-TYPE	17	8	10	8	33	23	11

'HSD17B7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1220. Gene #122: 'HSD17B7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HSD17B7 MUTATED	1	2	0	1	2	1
HSD17B7 WILD-TYPE	16	30	13	31	14	6

'HTATSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 1

Table S1221. Gene #123: 'HTATSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HTATSF1 MUTATED	1	2	3	3
HTATSF1 WILD-TYPE	18	51	27	21

'HTATSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S1222. Gene #123: 'HTATSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HTATSF1 MUTATED	2	5	2	0
HTATSF1 WILD-TYPE	33	25	32	26

'HTATSF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1223. Gene #123: 'HTATSF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HTATSF1 MUTATED	2	0	0	2	0
HTATSF1 WILD-TYPE	27	18	13	7	13

'HTATSF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S1224. Gene #123: 'HTATSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HTATSF1 MUTATED	3	0	0	1	0
HTATSF1 WILD-TYPE	29	18	12	9	10

'HTATSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 1

Table S1225. Gene #123: 'HTATSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HTATSF1 MUTATED	0	2	3	4	0
HTATSF1 WILD-TYPE	26	18	25	21	20

'HTATSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1226. Gene #123: 'HTATSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HTATSF1 MUTATED	5	2	2
HTATSF1 WILD-TYPE	43	51	16

'HTATSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 1

Table S1227. Gene #123: 'HTATSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HTATSF1 MUTATED	2	0	3	3	1
HTATSF1 WILD-TYPE	35	31	14	18	12

'HTATSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0636 (Fisher's exact test), Q value = 1

Table S1228. Gene #123: 'HTATSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HTATSF1 MUTATED	3	5	1
HTATSF1 WILD-TYPE	68	22	20

'HTATSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1229. Gene #123: 'HTATSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HTATSF1 MUTATED	3	0	1	0	3	0	2
HTATSF1 WILD-TYPE	15	8	9	8	33	25	10

'HTATSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S1230. Gene #123: 'HTATSF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HTATSF1 MUTATED	0	2	0	5	0	2
HTATSF1 WILD-TYPE	17	30	13	27	16	5

'PRDM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S1231. Gene #124: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PRDM8 MUTATED	0	5	1	2
PRDM8 WILD-TYPE	19	48	29	22

'PRDM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S1232. Gene #124: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PRDM8 MUTATED	2	2	3	1
PRDM8 WILD-TYPE	33	28	31	25

'PRDM8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1233. Gene #124: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PRDM8 MUTATED	4	1	0	1	0
PRDM8 WILD-TYPE	25	17	13	8	13

'PRDM8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S1234. Gene #124: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PRDM8 MUTATED	5	0	0	0	1
PRDM8 WILD-TYPE	27	18	12	10	9

'PRDM8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1235. Gene #124: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PRDM8 MUTATED	2	1	1	3	1
PRDM8 WILD-TYPE	24	19	27	22	19

'PRDM8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S1236. Gene #124: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PRDM8 MUTATED	5	3	0
PRDM8 WILD-TYPE	43	50	18

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S1237. Gene #124: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PRDM8 MUTATED	4	1	2	1	0
PRDM8 WILD-TYPE	33	30	15	20	13

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1238. Gene #124: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PRDM8 MUTATED	5	2	1
PRDM8 WILD-TYPE	66	25	20

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S1239. Gene #124: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PRDM8 MUTATED	0	1	3	0	3	1	0
PRDM8 WILD-TYPE	18	7	7	8	33	24	12

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S1240. Gene #124: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PRDM8 MUTATED	1	3	0	3	1	0
PRDM8 WILD-TYPE	16	29	13	29	15	7

'TIGD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S1241. Gene #125: 'TIGD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TIGD6 MUTATED	1	2	1	3
TIGD6 WILD-TYPE	18	51	29	21

'TIGD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S1242. Gene #125: 'TIGD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TIGD6 MUTATED	3	1	2	1
TIGD6 WILD-TYPE	32	29	32	25

'TIGD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1243. Gene #125: 'TIGD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TIGD6 MUTATED	3	1	0	1	0
TIGD6 WILD-TYPE	26	17	13	8	13

'TIGD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S1244. Gene #125: 'TIGD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TIGD6 MUTATED	4	1	0	0	0
TIGD6 WILD-TYPE	28	17	12	10	10

'TIGD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1245. Gene #125: 'TIGD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TIGD6 MUTATED	1	1	1	3	1
TIGD6 WILD-TYPE	25	19	27	22	19

'TIGD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1246. Gene #125: 'TIGD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TIGD6 MUTATED	3	4	0
TIGD6 WILD-TYPE	45	49	18

'TIGD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1247. Gene #125: 'TIGD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TIGD6 MUTATED	4	1	1	1	0
TIGD6 WILD-TYPE	33	30	16	20	13

'TIGD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S1248. Gene #125: 'TIGD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TIGD6 MUTATED	6	1	0
TIGD6 WILD-TYPE	65	26	21

'TIGD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S1249. Gene #125: 'TIGD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TIGD6 MUTATED	0	0	1	1	4	1	0
TIGD6 WILD-TYPE	18	8	9	7	32	24	12

'TIGD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S1250. Gene #125: 'TIGD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TIGD6 MUTATED	0	3	1	3	0	0
TIGD6 WILD-TYPE	17	29	12	29	16	7

'CLCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1251. Gene #126: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CLCC1 MUTATED	1	1	1	3
CLCC1 WILD-TYPE	18	52	29	21

'CLCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0063 (Fisher's exact test), Q value = 1

Table S1252. Gene #126: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CLCC1 MUTATED	0	2	0	4
CLCC1 WILD-TYPE	35	28	34	22

Figure S68. Get High-res Image Gene #126: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00442 (Fisher's exact test), Q value = 1

Table S1253. Gene #126: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CLCC1 MUTATED	0	0	0	2	4
CLCC1 WILD-TYPE	26	20	28	23	16

Figure S69. Get High-res Image Gene #126: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CLCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1254. Gene #126: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CLCC1 MUTATED	2	3	1
CLCC1 WILD-TYPE	46	50	17

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 1

Table S1255. Gene #126: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CLCC1 MUTATED	0	3	2	0	1
CLCC1 WILD-TYPE	37	28	15	21	12

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1256. Gene #126: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CLCC1 MUTATED	3	2	1
CLCC1 WILD-TYPE	68	25	20

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S1257. Gene #126: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CLCC1 MUTATED	0	0	1	2	1	2	0
CLCC1 WILD-TYPE	18	8	9	6	35	23	12

'CLCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1258. Gene #126: 'CLCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CLCC1 MUTATED	0	1	2	2	1	0
CLCC1 WILD-TYPE	17	31	11	30	15	7

'MKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S1259. Gene #127: 'MKL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MKL1 MUTATED	1	2	3	1
MKL1 WILD-TYPE	18	51	27	23

'MKL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S1260. Gene #127: 'MKL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MKL1 MUTATED	1	1	1	4
MKL1 WILD-TYPE	34	29	33	22

'MKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1261. Gene #127: 'MKL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MKL1 MUTATED	2	3	0	0	0
MKL1 WILD-TYPE	27	15	13	9	13

'MKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1262. Gene #127: 'MKL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MKL1 MUTATED	2	3	0	0	0
MKL1 WILD-TYPE	30	15	12	10	10

'MKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1263. Gene #127: 'MKL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MKL1 MUTATED	0	1	1	1	3
MKL1 WILD-TYPE	26	19	27	24	17

'MKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1264. Gene #127: 'MKL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MKL1 MUTATED	2	3	1
MKL1 WILD-TYPE	46	50	17

'MKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 1

Table S1265. Gene #127: 'MKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MKL1 MUTATED	0	4	1	0	1
MKL1 WILD-TYPE	37	27	16	21	12

'MKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1266. Gene #127: 'MKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MKL1 MUTATED	2	2	2
MKL1 WILD-TYPE	69	25	19

'MKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 1

Table S1267. Gene #127: 'MKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MKL1 MUTATED	1	0	0	1	0	4	0
MKL1 WILD-TYPE	17	8	10	7	36	21	12

'MKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1268. Gene #127: 'MKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MKL1 MUTATED	0	1	1	1	3	0
MKL1 WILD-TYPE	17	31	12	31	13	7

'SFRS2IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 1

Table S1269. Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SFRS2IP MUTATED	0	3	3	5
SFRS2IP WILD-TYPE	19	50	27	19

'SFRS2IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S1270. Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SFRS2IP MUTATED	5	3	2	1
SFRS2IP WILD-TYPE	30	27	32	25

'SFRS2IP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1271. Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SFRS2IP MUTATED	5	1	0	1	0
SFRS2IP WILD-TYPE	24	17	13	8	13

'SFRS2IP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 1

Table S1272. Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SFRS2IP MUTATED	7	0	0	0	0
SFRS2IP WILD-TYPE	25	18	12	10	10

Figure S70. Get High-res Image Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SFRS2IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1273. Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SFRS2IP MUTATED	3	3	1	3	0
SFRS2IP WILD-TYPE	23	17	27	22	20

'SFRS2IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1274. Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SFRS2IP MUTATED	4	4	2
SFRS2IP WILD-TYPE	44	49	16

'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 1

Table S1275. Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SFRS2IP MUTATED	4	0	3	1	2
SFRS2IP WILD-TYPE	33	31	14	20	11

'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1276. Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SFRS2IP MUTATED	6	3	1
SFRS2IP WILD-TYPE	65	24	20

'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S1277. Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SFRS2IP MUTATED	1	1	1	0	4	2	1
SFRS2IP WILD-TYPE	17	7	9	8	32	23	11

'SFRS2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1278. Gene #128: 'SFRS2IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SFRS2IP MUTATED	1	4	0	3	1	1
SFRS2IP WILD-TYPE	16	28	13	29	15	6

'PAK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S1279. Gene #129: 'PAK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PAK3 MUTATED	3	2	3	4
PAK3 WILD-TYPE	16	51	27	20

'PAK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S1280. Gene #129: 'PAK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PAK3 MUTATED	5	3	2	2
PAK3 WILD-TYPE	30	27	32	24

'PAK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1281. Gene #129: 'PAK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PAK3 MUTATED	5	0	1	1	1
PAK3 WILD-TYPE	24	18	12	8	12

'PAK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1282. Gene #129: 'PAK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PAK3 MUTATED	5	1	1	1	0
PAK3 WILD-TYPE	27	17	11	9	10

'PAK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1283. Gene #129: 'PAK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PAK3 MUTATED	2	3	2	2	3
PAK3 WILD-TYPE	24	17	26	23	17

'PAK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S1284. Gene #129: 'PAK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PAK3 MUTATED	3	5	4
PAK3 WILD-TYPE	45	48	14

'PAK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S1285. Gene #129: 'PAK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PAK3 MUTATED	5	3	1	2	1
PAK3 WILD-TYPE	32	28	16	19	12

'PAK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1286. Gene #129: 'PAK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PAK3 MUTATED	7	1	4
PAK3 WILD-TYPE	64	26	17

'PAK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1287. Gene #129: 'PAK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PAK3 MUTATED	0	0	0	2	5	2	3
PAK3 WILD-TYPE	18	8	10	6	31	23	9

'PAK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1288. Gene #129: 'PAK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PAK3 MUTATED	1	3	2	2	2	2
PAK3 WILD-TYPE	16	29	11	30	14	5

'RTKN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1289. Gene #130: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RTKN2 MUTATED	1	3	1	3
RTKN2 WILD-TYPE	18	50	29	21

'RTKN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1290. Gene #130: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RTKN2 MUTATED	1	2	2	3
RTKN2 WILD-TYPE	34	28	32	23

'RTKN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S1291. Gene #130: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RTKN2 MUTATED	2	1	1	0	2
RTKN2 WILD-TYPE	27	17	12	9	11

'RTKN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1292. Gene #130: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RTKN2 MUTATED	4	1	1	0	0
RTKN2 WILD-TYPE	28	17	11	10	10

'RTKN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S1293. Gene #130: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RTKN2 MUTATED	0	1	4	2	1
RTKN2 WILD-TYPE	26	19	24	23	19

'RTKN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1294. Gene #130: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RTKN2 MUTATED	3	3	2
RTKN2 WILD-TYPE	45	50	16

'RTKN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1295. Gene #130: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RTKN2 MUTATED	2	3	2	0	1
RTKN2 WILD-TYPE	35	28	15	21	12

'RTKN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1296. Gene #130: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RTKN2 MUTATED	5	2	1
RTKN2 WILD-TYPE	66	25	20

'RTKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S1297. Gene #130: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RTKN2 MUTATED	0	0	1	0	3	3	1
RTKN2 WILD-TYPE	18	8	9	8	33	22	11

'RTKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S1298. Gene #130: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RTKN2 MUTATED	1	4	0	2	1	0
RTKN2 WILD-TYPE	16	28	13	30	15	7

'TEX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1299. Gene #131: 'TEX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TEX2 MUTATED	2	3	3	1
TEX2 WILD-TYPE	17	50	27	23

'TEX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1300. Gene #131: 'TEX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TEX2 MUTATED	4	2	2	1
TEX2 WILD-TYPE	31	28	32	25

'TEX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1301. Gene #131: 'TEX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TEX2 MUTATED	1	4	1	1	0
TEX2 WILD-TYPE	28	14	12	8	13

'TEX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1302. Gene #131: 'TEX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TEX2 MUTATED	2	4	1	0	0
TEX2 WILD-TYPE	30	14	11	10	10

'TEX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S1303. Gene #131: 'TEX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TEX2 MUTATED	3	1	1	3	1
TEX2 WILD-TYPE	23	19	27	22	19

'TEX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S1304. Gene #131: 'TEX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TEX2 MUTATED	4	3	2
TEX2 WILD-TYPE	44	50	16

'TEX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S1305. Gene #131: 'TEX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TEX2 MUTATED	4	1	1	1	2
TEX2 WILD-TYPE	33	30	16	20	11

'TEX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1306. Gene #131: 'TEX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TEX2 MUTATED	5	2	2
TEX2 WILD-TYPE	66	25	19

'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S1307. Gene #131: 'TEX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TEX2 MUTATED	0	0	1	2	3	1	2
TEX2 WILD-TYPE	18	8	9	6	33	24	10

'TEX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S1308. Gene #131: 'TEX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TEX2 MUTATED	1	3	0	3	2	0
TEX2 WILD-TYPE	16	29	13	29	14	7

'TMEM41A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1309. Gene #132: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TMEM41A MUTATED	0	3	1	2
TMEM41A WILD-TYPE	19	50	29	22

'TMEM41A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1310. Gene #132: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TMEM41A MUTATED	2	1	3	0
TMEM41A WILD-TYPE	33	29	31	26

'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1311. Gene #132: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TMEM41A MUTATED	1	2	2	1	0
TMEM41A WILD-TYPE	25	18	26	24	20

'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1312. Gene #132: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TMEM41A MUTATED	2	3	1
TMEM41A WILD-TYPE	46	50	17

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1313. Gene #132: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TMEM41A MUTATED	4	0	0	2	0
TMEM41A WILD-TYPE	33	31	17	19	13

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1314. Gene #132: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TMEM41A MUTATED	4	1	1
TMEM41A WILD-TYPE	67	26	20

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1315. Gene #132: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TMEM41A MUTATED	1	1	1	0	1	1	1
TMEM41A WILD-TYPE	17	7	9	8	35	24	11

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1316. Gene #132: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TMEM41A MUTATED	0	3	0	2	0	1
TMEM41A WILD-TYPE	17	29	13	30	16	6

'DHX57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1317. Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DHX57 MUTATED	0	6	3	2
DHX57 WILD-TYPE	19	47	27	22

'DHX57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 1

Table S1318. Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DHX57 MUTATED	7	0	2	2
DHX57 WILD-TYPE	28	30	32	24

Figure S71. Get High-res Image Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DHX57 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 1

Table S1319. Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DHX57 MUTATED	4	2	0	3	0
DHX57 WILD-TYPE	25	16	13	6	13

'DHX57 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1320. Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DHX57 MUTATED	5	2	0	2	0
DHX57 WILD-TYPE	27	16	12	8	10

'DHX57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S1321. Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DHX57 MUTATED	4	2	1	3	1
DHX57 WILD-TYPE	22	18	27	22	19

'DHX57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1322. Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DHX57 MUTATED	5	5	1
DHX57 WILD-TYPE	43	48	17

'DHX57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S1323. Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DHX57 MUTATED	5	1	1	2	2
DHX57 WILD-TYPE	32	30	16	19	11

'DHX57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1324. Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DHX57 MUTATED	8	1	2
DHX57 WILD-TYPE	63	26	19

'DHX57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S1325. Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DHX57 MUTATED	0	0	1	1	5	3	0
DHX57 WILD-TYPE	18	8	9	7	31	22	12

'DHX57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S1326. Gene #133: 'DHX57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DHX57 MUTATED	2	2	1	3	2	0
DHX57 WILD-TYPE	15	30	12	29	14	7

'UHRF1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S1327. Gene #134: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
UHRF1BP1 MUTATED	1	1	4	1
UHRF1BP1 WILD-TYPE	18	52	26	23

'UHRF1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1328. Gene #134: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
UHRF1BP1 MUTATED	1	3	1	2
UHRF1BP1 WILD-TYPE	34	27	33	24

'UHRF1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1329. Gene #134: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
UHRF1BP1 MUTATED	0	1	0	1	1
UHRF1BP1 WILD-TYPE	29	17	13	8	12

'UHRF1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1330. Gene #134: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
UHRF1BP1 MUTATED	1	1	1	0	0
UHRF1BP1 WILD-TYPE	31	17	11	10	10

'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1331. Gene #134: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
UHRF1BP1 MUTATED	1	1	0	3	2
UHRF1BP1 WILD-TYPE	25	19	28	22	18

'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1332. Gene #134: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
UHRF1BP1 MUTATED	3	2	2
UHRF1BP1 WILD-TYPE	45	51	16

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1333. Gene #134: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
UHRF1BP1 MUTATED	1	1	2	2	1
UHRF1BP1 WILD-TYPE	36	30	15	19	12

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S1334. Gene #134: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
UHRF1BP1 MUTATED	3	2	2
UHRF1BP1 WILD-TYPE	68	25	19

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 1

Table S1335. Gene #134: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
UHRF1BP1 MUTATED	2	0	1	2	1	0	1
UHRF1BP1 WILD-TYPE	16	8	9	6	35	25	11

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1336. Gene #134: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
UHRF1BP1 MUTATED	0	1	1	3	1	1
UHRF1BP1 WILD-TYPE	17	31	12	29	15	6

'NEDD4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S1337. Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NEDD4L MUTATED	2	3	3	2
NEDD4L WILD-TYPE	17	50	27	22

'NEDD4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 1

Table S1338. Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NEDD4L MUTATED	2	2	6	0
NEDD4L WILD-TYPE	33	28	28	26

'NEDD4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 1

Table S1339. Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NEDD4L MUTATED	1	1	3	2	0
NEDD4L WILD-TYPE	28	17	10	7	13

'NEDD4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1340. Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NEDD4L MUTATED	3	1	2	0	1
NEDD4L WILD-TYPE	29	17	10	10	9

'NEDD4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 1

Table S1341. Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NEDD4L MUTATED	0	3	6	1	0
NEDD4L WILD-TYPE	26	17	22	24	20

Figure S72. Get High-res Image Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NEDD4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S1342. Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NEDD4L MUTATED	2	6	2
NEDD4L WILD-TYPE	46	47	16

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S1343. Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NEDD4L MUTATED	2	3	0	2	3
NEDD4L WILD-TYPE	35	28	17	19	10

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S1344. Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NEDD4L MUTATED	7	1	2
NEDD4L WILD-TYPE	64	26	19

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S1345. Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NEDD4L MUTATED	1	2	1	0	3	2	1
NEDD4L WILD-TYPE	17	6	9	8	33	23	11

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S1346. Gene #135: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NEDD4L MUTATED	1	4	1	2	2	0
NEDD4L WILD-TYPE	16	28	12	30	14	7

'SMCR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 1

Table S1347. Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SMCR7 MUTATED	0	7	0	0
SMCR7 WILD-TYPE	19	46	30	24

Figure S73. Get High-res Image Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SMCR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1348. Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SMCR7 MUTATED	2	2	2	1
SMCR7 WILD-TYPE	33	28	32	25

'SMCR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1349. Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SMCR7 MUTATED	1	1	0	1	1
SMCR7 WILD-TYPE	28	17	13	8	12

'SMCR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1350. Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SMCR7 MUTATED	1	1	1	1	0
SMCR7 WILD-TYPE	31	17	11	9	10

'SMCR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1351. Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SMCR7 MUTATED	3	1	2	1	0
SMCR7 WILD-TYPE	23	19	26	24	20

'SMCR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S1352. Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SMCR7 MUTATED	2	4	1
SMCR7 WILD-TYPE	46	49	17

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S1353. Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SMCR7 MUTATED	2	2	1	2	0
SMCR7 WILD-TYPE	35	29	16	19	13

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1354. Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SMCR7 MUTATED	4	2	1
SMCR7 WILD-TYPE	67	25	20

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 1

Table S1355. Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SMCR7 MUTATED	2	2	1	0	1	0	1
SMCR7 WILD-TYPE	16	6	9	8	35	25	11

'SMCR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S1356. Gene #136: 'SMCR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SMCR7 MUTATED	0	3	1	2	0	1
SMCR7 WILD-TYPE	17	29	12	30	16	6

'PUM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1357. Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PUM2 MUTATED	0	3	3	1
PUM2 WILD-TYPE	19	50	27	23

'PUM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S1358. Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PUM2 MUTATED	3	2	1	1
PUM2 WILD-TYPE	32	28	33	25

'PUM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1359. Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PUM2 MUTATED	2	0	0	1	0
PUM2 WILD-TYPE	27	18	13	8	13

'PUM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1360. Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PUM2 MUTATED	3	0	0	0	0
PUM2 WILD-TYPE	29	18	12	10	10

'PUM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S1361. Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PUM2 MUTATED	2	2	0	2	1
PUM2 WILD-TYPE	24	18	28	23	19

'PUM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1362. Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PUM2 MUTATED	4	1	2
PUM2 WILD-TYPE	44	52	16

'PUM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 1

Table S1363. Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PUM2 MUTATED	1	0	1	2	3
PUM2 WILD-TYPE	36	31	16	19	10

Figure S74. Get High-res Image Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PUM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1364. Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PUM2 MUTATED	3	2	2
PUM2 WILD-TYPE	68	25	19

'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1365. Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PUM2 MUTATED	0	0	1	1	2	1	1
PUM2 WILD-TYPE	18	8	9	7	34	24	11

'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S1366. Gene #137: 'PUM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PUM2 MUTATED	1	0	0	2	2	1
PUM2 WILD-TYPE	16	32	13	30	14	6

'IL1R2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S1367. Gene #138: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IL1R2 MUTATED	0	4	1	1
IL1R2 WILD-TYPE	19	49	29	23

'IL1R2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S1368. Gene #138: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IL1R2 MUTATED	4	0	2	0
IL1R2 WILD-TYPE	31	30	32	26

'IL1R2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1369. Gene #138: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
IL1R2 MUTATED	2	1	0	2	0
IL1R2 WILD-TYPE	27	17	13	7	13

'IL1R2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1370. Gene #138: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
IL1R2 MUTATED	3	1	0	1	0
IL1R2 WILD-TYPE	29	17	12	9	10

'IL1R2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1371. Gene #138: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IL1R2 MUTATED	2	1	2	1	0
IL1R2 WILD-TYPE	24	19	26	24	20

'IL1R2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1372. Gene #138: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IL1R2 MUTATED	3	3	0
IL1R2 WILD-TYPE	45	50	18

'IL1R2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S1373. Gene #138: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IL1R2 MUTATED	2	0	0	2	2
IL1R2 WILD-TYPE	35	31	17	19	11

'IL1R2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1374. Gene #138: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IL1R2 MUTATED	3	1	2
IL1R2 WILD-TYPE	68	26	19

'IL1R2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S1375. Gene #138: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IL1R2 MUTATED	1	0	1	0	2	1	1
IL1R2 WILD-TYPE	17	8	9	8	34	24	11

'IL1R2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S1376. Gene #138: 'IL1R2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IL1R2 MUTATED	1	1	0	3	1	0
IL1R2 WILD-TYPE	16	31	13	29	15	7

'SLC22A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1377. Gene #139: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC22A9 MUTATED	0	3	4	1
SLC22A9 WILD-TYPE	19	50	26	23

'SLC22A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1378. Gene #139: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC22A9 MUTATED	2	2	1	3
SLC22A9 WILD-TYPE	33	28	33	23

'SLC22A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1379. Gene #139: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLC22A9 MUTATED	2	1	2	0	1
SLC22A9 WILD-TYPE	27	17	11	9	12

'SLC22A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1380. Gene #139: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLC22A9 MUTATED	2	1	2	0	1
SLC22A9 WILD-TYPE	30	17	10	10	9

'SLC22A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S1381. Gene #139: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC22A9 MUTATED	1	2	1	1	3
SLC22A9 WILD-TYPE	25	18	27	24	17

'SLC22A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1382. Gene #139: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC22A9 MUTATED	3	2	3
SLC22A9 WILD-TYPE	45	51	15

'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S1383. Gene #139: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC22A9 MUTATED	2	3	1	1	1
SLC22A9 WILD-TYPE	35	28	16	20	12

'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1384. Gene #139: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC22A9 MUTATED	4	1	3
SLC22A9 WILD-TYPE	67	26	18

'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S1385. Gene #139: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC22A9 MUTATED	1	0	0	1	2	2	2
SLC22A9 WILD-TYPE	17	8	10	7	34	23	10

'SLC22A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S1386. Gene #139: 'SLC22A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC22A9 MUTATED	1	1	1	1	3	1
SLC22A9 WILD-TYPE	16	31	12	31	13	6

'MAGEA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S1387. Gene #140: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MAGEA10 MUTATED	0	4	1	1
MAGEA10 WILD-TYPE	19	49	29	23

'MAGEA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1388. Gene #140: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MAGEA10 MUTATED	2	1	2	1
MAGEA10 WILD-TYPE	33	29	32	25

'MAGEA10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S1389. Gene #140: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MAGEA10 MUTATED	0	3	0	0	1
MAGEA10 WILD-TYPE	29	15	13	9	12

'MAGEA10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0792 (Fisher's exact test), Q value = 1

Table S1390. Gene #140: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MAGEA10 MUTATED	0	3	1	0	0
MAGEA10 WILD-TYPE	32	15	11	10	10

'MAGEA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1391. Gene #140: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MAGEA10 MUTATED	3	0	0	2	1
MAGEA10 WILD-TYPE	23	20	28	23	19

'MAGEA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1392. Gene #140: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MAGEA10 MUTATED	3	3	0
MAGEA10 WILD-TYPE	45	50	18

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S1393. Gene #140: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MAGEA10 MUTATED	3	1	2	0	0
MAGEA10 WILD-TYPE	34	30	15	21	13

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S1394. Gene #140: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MAGEA10 MUTATED	4	2	0
MAGEA10 WILD-TYPE	67	25	21

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1395. Gene #140: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MAGEA10 MUTATED	2	0	0	0	1	3	0
MAGEA10 WILD-TYPE	16	8	10	8	35	22	12

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1396. Gene #140: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MAGEA10 MUTATED	0	4	0	2	0	0
MAGEA10 WILD-TYPE	17	28	13	30	16	7

'PTPLAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1397. Gene #141: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PTPLAD2 MUTATED	0	3	2	1
PTPLAD2 WILD-TYPE	19	50	28	23

'PTPLAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S1398. Gene #141: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PTPLAD2 MUTATED	2	1	1	2
PTPLAD2 WILD-TYPE	33	29	33	24

'PTPLAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1399. Gene #141: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PTPLAD2 MUTATED	2	0	0	2	2
PTPLAD2 WILD-TYPE	24	20	28	23	18

'PTPLAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1400. Gene #141: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PTPLAD2 MUTATED	2	4	0
PTPLAD2 WILD-TYPE	46	49	18

'PTPLAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1401. Gene #141: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PTPLAD2 MUTATED	2	2	1	1	0
PTPLAD2 WILD-TYPE	35	29	16	20	13

'PTPLAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1402. Gene #141: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PTPLAD2 MUTATED	5	1	0
PTPLAD2 WILD-TYPE	66	26	21

'PTPLAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S1403. Gene #141: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PTPLAD2 MUTATED	0	0	1	0	3	2	0
PTPLAD2 WILD-TYPE	18	8	9	8	33	23	12

'PTPLAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S1404. Gene #141: 'PTPLAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PTPLAD2 MUTATED	1	1	1	2	1	0
PTPLAD2 WILD-TYPE	16	31	12	30	15	7

'HERC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 1

Table S1405. Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HERC5 MUTATED	1	0	2	3
HERC5 WILD-TYPE	18	53	28	21

Figure S75. Get High-res Image Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HERC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 1

Table S1406. Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HERC5 MUTATED	1	1	0	4
HERC5 WILD-TYPE	34	29	34	22

Figure S76. Get High-res Image Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HERC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S1407. Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HERC5 MUTATED	1	0	1	1	0
HERC5 WILD-TYPE	28	18	12	8	13

'HERC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1408. Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HERC5 MUTATED	3	0	0	0	0
HERC5 WILD-TYPE	29	18	12	10	10

'HERC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S1409. Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HERC5 MUTATED	0	2	1	2	1
HERC5 WILD-TYPE	26	18	27	23	19

'HERC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1410. Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HERC5 MUTATED	2	2	2
HERC5 WILD-TYPE	46	51	16

'HERC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 1

Table S1411. Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HERC5 MUTATED	0	1	1	2	2
HERC5 WILD-TYPE	37	30	16	19	11

'HERC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S1412. Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HERC5 MUTATED	3	1	2
HERC5 WILD-TYPE	68	26	19

'HERC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1413. Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HERC5 MUTATED	1	1	1	0	0	1	2
HERC5 WILD-TYPE	17	7	9	8	36	24	10

'HERC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S1414. Gene #142: 'HERC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HERC5 MUTATED	2	0	1	2	1	0
HERC5 WILD-TYPE	15	32	12	30	15	7

'WDR67 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1415. Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
WDR67 MUTATED	1	3	1	0
WDR67 WILD-TYPE	18	50	29	24

'WDR67 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S1416. Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
WDR67 MUTATED	3	0	2	0
WDR67 WILD-TYPE	32	30	32	26

'WDR67 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 1

Table S1417. Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
WDR67 MUTATED	0	0	2	2	0
WDR67 WILD-TYPE	29	18	11	7	13

Figure S77. Get High-res Image Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WDR67 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S1418. Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
WDR67 MUTATED	1	0	1	1	1
WDR67 WILD-TYPE	31	18	11	9	9

'WDR67 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S1419. Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
WDR67 MUTATED	0	0	2	2	1
WDR67 WILD-TYPE	26	20	26	23	19

'WDR67 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S1420. Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
WDR67 MUTATED	3	2	0
WDR67 WILD-TYPE	45	51	18

'WDR67 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S1421. Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
WDR67 MUTATED	1	2	1	1	0
WDR67 WILD-TYPE	36	29	16	20	13

'WDR67 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S1422. Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
WDR67 MUTATED	5	0	0
WDR67 WILD-TYPE	66	27	21

'WDR67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S1423. Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
WDR67 MUTATED	0	0	1	1	2	1	0
WDR67 WILD-TYPE	18	8	9	7	34	24	12

'WDR67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S1424. Gene #143: 'WDR67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
WDR67 MUTATED	0	2	1	2	0	0
WDR67 WILD-TYPE	17	30	12	30	16	7

'TMEM40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1425. Gene #144: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TMEM40 MUTATED	2	3	1	0
TMEM40 WILD-TYPE	17	50	29	24

'TMEM40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1426. Gene #144: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TMEM40 MUTATED	3	1	1	1
TMEM40 WILD-TYPE	32	29	33	25

'TMEM40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S1427. Gene #144: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TMEM40 MUTATED	0	1	1	1	0
TMEM40 WILD-TYPE	29	17	12	8	13

'TMEM40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1428. Gene #144: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TMEM40 MUTATED	0	1	0	1	1
TMEM40 WILD-TYPE	32	17	12	9	9

'TMEM40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S1429. Gene #144: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TMEM40 MUTATED	1	1	1	1	2
TMEM40 WILD-TYPE	25	19	27	24	18

'TMEM40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1430. Gene #144: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TMEM40 MUTATED	2	3	1
TMEM40 WILD-TYPE	46	50	17

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S1431. Gene #144: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TMEM40 MUTATED	2	2	1	0	1
TMEM40 WILD-TYPE	35	29	16	21	12

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1432. Gene #144: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TMEM40 MUTATED	5	0	1
TMEM40 WILD-TYPE	66	27	20

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S1433. Gene #144: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TMEM40 MUTATED	0	0	0	2	2	2	0
TMEM40 WILD-TYPE	18	8	10	6	34	23	12

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1434. Gene #144: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TMEM40 MUTATED	0	2	2	1	1	0
TMEM40 WILD-TYPE	17	30	11	31	15	7

'UNC5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1435. Gene #145: 'UNC5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
UNC5A MUTATED	0	3	2	3
UNC5A WILD-TYPE	19	50	28	21

'UNC5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1436. Gene #145: 'UNC5A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
UNC5A MUTATED	4	1	2	1
UNC5A WILD-TYPE	31	29	32	25

'UNC5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S1437. Gene #145: 'UNC5A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
UNC5A MUTATED	1	2	0	2	1
UNC5A WILD-TYPE	28	16	13	7	12

'UNC5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S1438. Gene #145: 'UNC5A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
UNC5A MUTATED	2	2	0	1	1
UNC5A WILD-TYPE	30	16	12	9	9

'UNC5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1439. Gene #145: 'UNC5A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
UNC5A MUTATED	1	2	2	2	0
UNC5A WILD-TYPE	25	18	26	23	20

'UNC5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S1440. Gene #145: 'UNC5A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
UNC5A MUTATED	4	1	2
UNC5A WILD-TYPE	44	52	16

'UNC5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1441. Gene #145: 'UNC5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
UNC5A MUTATED	2	0	2	1	2
UNC5A WILD-TYPE	35	31	15	20	11

'UNC5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1442. Gene #145: 'UNC5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
UNC5A MUTATED	4	2	1
UNC5A WILD-TYPE	67	25	20

'UNC5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S1443. Gene #145: 'UNC5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
UNC5A MUTATED	1	0	1	0	2	2	1
UNC5A WILD-TYPE	17	8	9	8	34	23	11

'UNC5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S1444. Gene #145: 'UNC5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
UNC5A MUTATED	0	2	0	3	1	1
UNC5A WILD-TYPE	17	30	13	29	15	6

'AARS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1445. Gene #146: 'AARS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AARS2 MUTATED	0	3	2	2
AARS2 WILD-TYPE	19	50	28	22

'AARS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S1446. Gene #146: 'AARS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AARS2 MUTATED	3	1	2	1
AARS2 WILD-TYPE	32	29	32	25

'AARS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1447. Gene #146: 'AARS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AARS2 MUTATED	3	2	0	1	0
AARS2 WILD-TYPE	26	16	13	8	13

'AARS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1448. Gene #146: 'AARS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AARS2 MUTATED	3	2	0	1	0
AARS2 WILD-TYPE	29	16	12	9	10

'AARS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 1

Table S1449. Gene #146: 'AARS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AARS2 MUTATED	2	0	0	4	1
AARS2 WILD-TYPE	24	20	28	21	19

'AARS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1450. Gene #146: 'AARS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AARS2 MUTATED	5	1	1
AARS2 WILD-TYPE	43	52	17

'AARS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1451. Gene #146: 'AARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AARS2 MUTATED	2	1	0	3	1
AARS2 WILD-TYPE	35	30	17	18	12

'AARS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1452. Gene #146: 'AARS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AARS2 MUTATED	5	1	1
AARS2 WILD-TYPE	66	26	20

'AARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1453. Gene #146: 'AARS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AARS2 MUTATED	1	0	1	2	2	1	0
AARS2 WILD-TYPE	17	8	9	6	34	24	12

'AARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1454. Gene #146: 'AARS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AARS2 MUTATED	0	1	1	4	1	0
AARS2 WILD-TYPE	17	31	12	28	15	7

'PDILT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1455. Gene #147: 'PDILT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PDILT MUTATED	1	5	1	2
PDILT WILD-TYPE	18	48	29	22

'PDILT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1456. Gene #147: 'PDILT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PDILT MUTATED	2	2	4	1
PDILT WILD-TYPE	33	28	30	25

'PDILT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1457. Gene #147: 'PDILT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PDILT MUTATED	2	2	0	2	1
PDILT WILD-TYPE	27	16	13	7	12

'PDILT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1458. Gene #147: 'PDILT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PDILT MUTATED	4	2	1	0	0
PDILT WILD-TYPE	28	16	11	10	10

'PDILT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S1459. Gene #147: 'PDILT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PDILT MUTATED	2	2	3	2	0
PDILT WILD-TYPE	24	18	25	23	20

'PDILT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1460. Gene #147: 'PDILT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PDILT MUTATED	4	5	0
PDILT WILD-TYPE	44	48	18

'PDILT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1461. Gene #147: 'PDILT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PDILT MUTATED	4	1	1	1	2
PDILT WILD-TYPE	33	30	16	20	11

'PDILT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1462. Gene #147: 'PDILT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PDILT MUTATED	5	3	1
PDILT WILD-TYPE	66	24	20

'PDILT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1463. Gene #147: 'PDILT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PDILT MUTATED	3	0	2	0	3	1	0
PDILT WILD-TYPE	15	8	8	8	33	24	12

'PDILT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1464. Gene #147: 'PDILT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PDILT MUTATED	0	4	0	4	1	0
PDILT WILD-TYPE	17	28	13	28	15	7

'PTPN21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1465. Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PTPN21 MUTATED	1	3	4	0
PTPN21 WILD-TYPE	18	50	26	24

'PTPN21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1466. Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PTPN21 MUTATED	3	2	1	2
PTPN21 WILD-TYPE	32	28	33	24

'PTPN21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S1467. Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PTPN21 MUTATED	2	1	0	1	1
PTPN21 WILD-TYPE	27	17	13	8	12

'PTPN21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S1468. Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PTPN21 MUTATED	3	1	0	0	1
PTPN21 WILD-TYPE	29	17	12	10	9

'PTPN21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 1

Table S1469. Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PTPN21 MUTATED	2	0	0	4	2
PTPN21 WILD-TYPE	24	20	28	21	18

'PTPN21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S1470. Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PTPN21 MUTATED	4	3	1
PTPN21 WILD-TYPE	44	50	17

'PTPN21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 1

Table S1471. Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PTPN21 MUTATED	0	3	2	3	0
PTPN21 WILD-TYPE	37	28	15	18	13

'PTPN21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S1472. Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PTPN21 MUTATED	4	3	1
PTPN21 WILD-TYPE	67	24	20

'PTPN21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 1

Table S1473. Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PTPN21 MUTATED	3	1	2	1	0	1	0
PTPN21 WILD-TYPE	15	7	8	7	36	24	12

Figure S78. Get High-res Image Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTPN21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S1474. Gene #148: 'PTPN21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PTPN21 MUTATED	1	0	2	4	1	0
PTPN21 WILD-TYPE	16	32	11	28	15	7

'HIBCH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S1475. Gene #149: 'HIBCH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HIBCH MUTATED	0	3	2	0
HIBCH WILD-TYPE	19	50	28	24

'HIBCH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1476. Gene #149: 'HIBCH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HIBCH MUTATED	0	2	1	2
HIBCH WILD-TYPE	35	28	33	24

'HIBCH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1477. Gene #149: 'HIBCH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HIBCH MUTATED	1	1	1	0	1
HIBCH WILD-TYPE	28	17	12	9	12

'HIBCH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1478. Gene #149: 'HIBCH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HIBCH MUTATED	0	1	1	1	1
HIBCH WILD-TYPE	32	17	11	9	9

'HIBCH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S1479. Gene #149: 'HIBCH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HIBCH MUTATED	0	1	2	1	1
HIBCH WILD-TYPE	26	19	26	24	19

'HIBCH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1480. Gene #149: 'HIBCH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HIBCH MUTATED	2	1	2
HIBCH WILD-TYPE	46	52	16

'HIBCH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1481. Gene #149: 'HIBCH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HIBCH MUTATED	0	3	0	1	1
HIBCH WILD-TYPE	37	28	17	20	12

'HIBCH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1482. Gene #149: 'HIBCH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HIBCH MUTATED	2	2	1
HIBCH WILD-TYPE	69	25	20

'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 1

Table S1483. Gene #149: 'HIBCH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HIBCH MUTATED	0	0	2	0	0	2	1
HIBCH WILD-TYPE	18	8	8	8	36	23	11

'HIBCH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S1484. Gene #149: 'HIBCH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HIBCH MUTATED	0	2	0	1	1	1
HIBCH WILD-TYPE	17	30	13	31	15	6

'C16ORF79 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1485. Gene #150: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C16ORF79 MUTATED	1	2	2	0
C16ORF79 WILD-TYPE	18	51	28	24

'C16ORF79 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S1486. Gene #150: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C16ORF79 MUTATED	1	1	3	0
C16ORF79 WILD-TYPE	34	29	31	26

'C16ORF79 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S1487. Gene #150: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C16ORF79 MUTATED	2	0	1	2	0
C16ORF79 WILD-TYPE	24	20	27	23	20

'C16ORF79 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1488. Gene #150: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C16ORF79 MUTATED	2	3	0
C16ORF79 WILD-TYPE	46	50	18

'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S1489. Gene #150: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C16ORF79 MUTATED	3	0	1	1	0
C16ORF79 WILD-TYPE	34	31	16	20	13

'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1490. Gene #150: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C16ORF79 MUTATED	4	1	0
C16ORF79 WILD-TYPE	67	26	21

'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1491. Gene #150: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C16ORF79 MUTATED	1	1	1	0	2	0	0
C16ORF79 WILD-TYPE	17	7	9	8	34	25	12

'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1492. Gene #150: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C16ORF79 MUTATED	2	1	0	2	0	0
C16ORF79 WILD-TYPE	15	31	13	30	16	7

'KIAA0430 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S1493. Gene #151: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KIAA0430 MUTATED	1	4	3	1
KIAA0430 WILD-TYPE	18	49	27	23

'KIAA0430 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S1494. Gene #151: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KIAA0430 MUTATED	2	3	3	1
KIAA0430 WILD-TYPE	33	27	31	25

'KIAA0430 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S1495. Gene #151: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KIAA0430 MUTATED	4	0	1	1	1
KIAA0430 WILD-TYPE	25	18	12	8	12

'KIAA0430 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1496. Gene #151: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KIAA0430 MUTATED	5	0	1	0	1
KIAA0430 WILD-TYPE	27	18	11	10	9

'KIAA0430 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S1497. Gene #151: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KIAA0430 MUTATED	2	3	2	1	1
KIAA0430 WILD-TYPE	24	17	26	24	19

'KIAA0430 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S1498. Gene #151: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KIAA0430 MUTATED	4	3	2
KIAA0430 WILD-TYPE	44	50	16

'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1499. Gene #151: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KIAA0430 MUTATED	3	2	1	1	2
KIAA0430 WILD-TYPE	34	29	16	20	11

'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1500. Gene #151: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KIAA0430 MUTATED	7	1	1
KIAA0430 WILD-TYPE	64	26	20

'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1501. Gene #151: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KIAA0430 MUTATED	1	1	2	0	3	1	1
KIAA0430 WILD-TYPE	17	7	8	8	33	24	11

'KIAA0430 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1502. Gene #151: 'KIAA0430 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KIAA0430 MUTATED	2	2	2	1	1	1
KIAA0430 WILD-TYPE	15	30	11	31	15	6

'NOX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1503. Gene #152: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NOX5 MUTATED	2	1	2	1
NOX5 WILD-TYPE	17	52	28	23

'NOX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1504. Gene #152: 'NOX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NOX5 MUTATED	3	1	1	1
NOX5 WILD-TYPE	32	29	33	25

'NOX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S1505. Gene #152: 'NOX5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NOX5 MUTATED	2	1	0	1	1
NOX5 WILD-TYPE	27	17	13	8	12

'NOX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1506. Gene #152: 'NOX5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NOX5 MUTATED	3	1	0	0	1
NOX5 WILD-TYPE	29	17	12	10	9

'NOX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1507. Gene #152: 'NOX5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NOX5 MUTATED	2	0	1	2	1
NOX5 WILD-TYPE	24	20	27	23	19

'NOX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1508. Gene #152: 'NOX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NOX5 MUTATED	2	3	1
NOX5 WILD-TYPE	46	50	17

'NOX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1509. Gene #152: 'NOX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NOX5 MUTATED	3	1	1	1	0
NOX5 WILD-TYPE	34	30	16	20	13

'NOX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1510. Gene #152: 'NOX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NOX5 MUTATED	4	1	1
NOX5 WILD-TYPE	67	26	20

'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S1511. Gene #152: 'NOX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NOX5 MUTATED	1	0	1	0	3	1	0
NOX5 WILD-TYPE	17	8	9	8	33	24	12

'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1512. Gene #152: 'NOX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NOX5 MUTATED	1	2	0	2	1	0
NOX5 WILD-TYPE	16	30	13	30	15	7

'NF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S1513. Gene #153: 'NF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NF2 MUTATED	1	3	1	0
NF2 WILD-TYPE	18	50	29	24

'NF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S1514. Gene #153: 'NF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NF2 MUTATED	2	1	2	0
NF2 WILD-TYPE	33	29	32	26

'NF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S1515. Gene #153: 'NF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NF2 MUTATED	1	0	1	1	0
NF2 WILD-TYPE	28	18	12	8	13

'NF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1516. Gene #153: 'NF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NF2 MUTATED	2	0	1	0	0
NF2 WILD-TYPE	30	18	11	10	10

'NF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S1517. Gene #153: 'NF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NF2 MUTATED	0	0	2	2	1
NF2 WILD-TYPE	26	20	26	23	19

'NF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S1518. Gene #153: 'NF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NF2 MUTATED	3	2	0
NF2 WILD-TYPE	45	51	18

'NF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S1519. Gene #153: 'NF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NF2 MUTATED	0	2	1	2	0
NF2 WILD-TYPE	37	29	16	19	13

'NF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1520. Gene #153: 'NF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NF2 MUTATED	4	1	0
NF2 WILD-TYPE	67	26	21

'NF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1521. Gene #153: 'NF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NF2 MUTATED	0	0	2	1	1	1	0
NF2 WILD-TYPE	18	8	8	7	35	24	12

'NF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1522. Gene #153: 'NF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NF2 MUTATED	0	1	2	2	0	0
NF2 WILD-TYPE	17	31	11	30	16	7

'EPHB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1523. Gene #154: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EPHB6 MUTATED	1	3	2	1
EPHB6 WILD-TYPE	18	50	28	23

'EPHB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1524. Gene #154: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EPHB6 MUTATED	4	1	2	0
EPHB6 WILD-TYPE	31	29	32	26

'EPHB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S1525. Gene #154: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EPHB6 MUTATED	1	0	1	1	1
EPHB6 WILD-TYPE	28	18	12	8	12

'EPHB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S1526. Gene #154: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EPHB6 MUTATED	2	0	1	0	1
EPHB6 WILD-TYPE	30	18	11	10	9

'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S1527. Gene #154: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EPHB6 MUTATED	1	1	2	1	2
EPHB6 WILD-TYPE	25	19	26	24	18

'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1528. Gene #154: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EPHB6 MUTATED	3	3	1
EPHB6 WILD-TYPE	45	50	17

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1529. Gene #154: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EPHB6 MUTATED	1	2	0	4	0
EPHB6 WILD-TYPE	36	29	17	17	13

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S1530. Gene #154: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EPHB6 MUTATED	6	0	1
EPHB6 WILD-TYPE	65	27	20

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1531. Gene #154: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EPHB6 MUTATED	0	0	1	1	2	1	1
EPHB6 WILD-TYPE	18	8	9	7	34	24	11

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S1532. Gene #154: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EPHB6 MUTATED	0	1	2	2	0	1
EPHB6 WILD-TYPE	17	31	11	30	16	6

'PRMT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S1533. Gene #155: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PRMT8 MUTATED	2	4	1	1
PRMT8 WILD-TYPE	17	49	29	23

'PRMT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S1534. Gene #155: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PRMT8 MUTATED	3	1	4	0
PRMT8 WILD-TYPE	32	29	30	26

'PRMT8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S1535. Gene #155: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PRMT8 MUTATED	0	2	1	0	0
PRMT8 WILD-TYPE	29	16	12	9	13

'PRMT8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1536. Gene #155: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PRMT8 MUTATED	0	2	1	0	0
PRMT8 WILD-TYPE	32	16	11	10	10

'PRMT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S1537. Gene #155: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PRMT8 MUTATED	4	0	3	1	0
PRMT8 WILD-TYPE	22	20	25	24	20

'PRMT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S1538. Gene #155: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PRMT8 MUTATED	2	6	0
PRMT8 WILD-TYPE	46	47	18

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 1

Table S1539. Gene #155: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PRMT8 MUTATED	6	0	1	1	0
PRMT8 WILD-TYPE	31	31	16	20	13

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1540. Gene #155: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PRMT8 MUTATED	7	1	0
PRMT8 WILD-TYPE	64	26	21

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1541. Gene #155: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PRMT8 MUTATED	0	1	0	0	5	1	0
PRMT8 WILD-TYPE	18	7	10	8	31	24	12

'PRMT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1542. Gene #155: 'PRMT8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PRMT8 MUTATED	0	5	0	2	0	0
PRMT8 WILD-TYPE	17	27	13	30	16	7

'TNRC6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1543. Gene #156: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TNRC6C MUTATED	1	6	1	1
TNRC6C WILD-TYPE	18	47	29	23

'TNRC6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 1

Table S1544. Gene #156: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TNRC6C MUTATED	6	1	2	0
TNRC6C WILD-TYPE	29	29	32	26

'TNRC6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 1

Table S1545. Gene #156: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TNRC6C MUTATED	2	1	0	3	0
TNRC6C WILD-TYPE	27	17	13	6	13

'TNRC6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S1546. Gene #156: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TNRC6C MUTATED	2	1	0	3	0
TNRC6C WILD-TYPE	30	17	12	7	10

'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1547. Gene #156: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TNRC6C MUTATED	4	1	1	2	0
TNRC6C WILD-TYPE	22	19	27	23	20

'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1548. Gene #156: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TNRC6C MUTATED	4	4	0
TNRC6C WILD-TYPE	44	49	18

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1549. Gene #156: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TNRC6C MUTATED	5	0	0	2	1
TNRC6C WILD-TYPE	32	31	17	19	12

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S1550. Gene #156: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TNRC6C MUTATED	6	1	1
TNRC6C WILD-TYPE	65	26	20

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S1551. Gene #156: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TNRC6C MUTATED	1	0	1	0	4	2	0
TNRC6C WILD-TYPE	17	8	9	8	32	23	12

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S1552. Gene #156: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TNRC6C MUTATED	2	2	1	2	1	0
TNRC6C WILD-TYPE	15	30	12	30	15	7

'ZC3H4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S1553. Gene #157: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZC3H4 MUTATED	1	4	1	2
ZC3H4 WILD-TYPE	18	49	29	22

'ZC3H4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1554. Gene #157: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZC3H4 MUTATED	2	1	3	1
ZC3H4 WILD-TYPE	33	29	31	25

'ZC3H4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S1555. Gene #157: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZC3H4 MUTATED	3	2	0	1	0
ZC3H4 WILD-TYPE	26	16	13	8	13

'ZC3H4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1556. Gene #157: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZC3H4 MUTATED	4	2	0	0	0
ZC3H4 WILD-TYPE	28	16	12	10	10

'ZC3H4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S1557. Gene #157: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZC3H4 MUTATED	2	1	1	2	0
ZC3H4 WILD-TYPE	24	19	27	23	20

'ZC3H4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S1558. Gene #157: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZC3H4 MUTATED	4	1	1
ZC3H4 WILD-TYPE	44	52	17

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1559. Gene #157: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZC3H4 MUTATED	3	0	1	1	1
ZC3H4 WILD-TYPE	34	31	16	20	12

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1560. Gene #157: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZC3H4 MUTATED	4	1	1
ZC3H4 WILD-TYPE	67	26	20

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S1561. Gene #157: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZC3H4 MUTATED	0	1	1	0	2	2	0
ZC3H4 WILD-TYPE	18	7	9	8	34	23	12

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1562. Gene #157: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZC3H4 MUTATED	1	2	0	2	1	0
ZC3H4 WILD-TYPE	16	30	13	30	15	7

'NRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1563. Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NRD1 MUTATED	1	3	4	1
NRD1 WILD-TYPE	18	50	26	23

'NRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1564. Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NRD1 MUTATED	2	3	3	1
NRD1 WILD-TYPE	33	27	31	25

'NRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 1

Table S1565. Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NRD1 MUTATED	0	2	3	1	2
NRD1 WILD-TYPE	29	16	10	8	11

'NRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 1

Table S1566. Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NRD1 MUTATED	2	2	0	0	4
NRD1 WILD-TYPE	30	16	12	10	6

Figure S79. Get High-res Image Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S1567. Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NRD1 MUTATED	1	2	3	2	1
NRD1 WILD-TYPE	25	18	25	23	19

'NRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1568. Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NRD1 MUTATED	3	4	2
NRD1 WILD-TYPE	45	49	16

'NRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S1569. Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NRD1 MUTATED	2	2	1	3	1
NRD1 WILD-TYPE	35	29	16	18	12

'NRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1570. Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NRD1 MUTATED	6	1	2
NRD1 WILD-TYPE	65	26	19

'NRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1571. Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NRD1 MUTATED	1	0	1	0	2	4	1
NRD1 WILD-TYPE	17	8	9	8	34	21	11

'NRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1572. Gene #158: 'NRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NRD1 MUTATED	0	4	0	2	2	1
NRD1 WILD-TYPE	17	28	13	30	14	6

'ZNF552 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 1

Table S1573. Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF552 MUTATED	2	0	1	3
ZNF552 WILD-TYPE	17	53	29	21

Figure S80. Get High-res Image Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF552 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1574. Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF552 MUTATED	1	2	2	1
ZNF552 WILD-TYPE	34	28	32	25

'ZNF552 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 1

Table S1575. Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF552 MUTATED	1	0	0	2	0
ZNF552 WILD-TYPE	28	18	13	7	13

'ZNF552 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S1576. Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF552 MUTATED	3	0	0	0	0
ZNF552 WILD-TYPE	29	18	12	10	10

'ZNF552 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1577. Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF552 MUTATED	0	3	2	1	0
ZNF552 WILD-TYPE	26	17	26	24	20

'ZNF552 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1578. Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF552 MUTATED	2	2	2
ZNF552 WILD-TYPE	46	51	16

'ZNF552 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 1

Table S1579. Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF552 MUTATED	1	0	0	3	2
ZNF552 WILD-TYPE	36	31	17	18	11

Figure S81. Get High-res Image Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF552 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S1580. Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF552 MUTATED	3	1	2
ZNF552 WILD-TYPE	68	26	19

'ZNF552 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S1581. Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF552 MUTATED	1	0	1	0	2	0	2
ZNF552 WILD-TYPE	17	8	9	8	34	25	10

'ZNF552 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1582. Gene #159: 'ZNF552 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF552 MUTATED	1	2	0	2	0	1
ZNF552 WILD-TYPE	16	30	13	30	16	6

'BCAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1583. Gene #160: 'BCAS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BCAS1 MUTATED	1	2	1	1
BCAS1 WILD-TYPE	18	51	29	23

'BCAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 1

Table S1584. Gene #160: 'BCAS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BCAS1 MUTATED	4	1	0	0
BCAS1 WILD-TYPE	31	29	34	26

'BCAS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S1585. Gene #160: 'BCAS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BCAS1 MUTATED	3	0	0	1	0
BCAS1 WILD-TYPE	26	18	13	8	13

'BCAS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S1586. Gene #160: 'BCAS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BCAS1 MUTATED	3	0	0	1	0
BCAS1 WILD-TYPE	29	18	12	9	10

'BCAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S1587. Gene #160: 'BCAS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BCAS1 MUTATED	0	1	0	3	1
BCAS1 WILD-TYPE	26	19	28	22	19

'BCAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S1588. Gene #160: 'BCAS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BCAS1 MUTATED	3	2	0
BCAS1 WILD-TYPE	45	51	18

'BCAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1589. Gene #160: 'BCAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BCAS1 MUTATED	1	1	1	1	1
BCAS1 WILD-TYPE	36	30	16	20	12

'BCAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1590. Gene #160: 'BCAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BCAS1 MUTATED	3	1	1
BCAS1 WILD-TYPE	68	26	20

'BCAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1591. Gene #160: 'BCAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BCAS1 MUTATED	1	0	0	0	1	3	0
BCAS1 WILD-TYPE	17	8	10	8	35	22	12

'BCAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1592. Gene #160: 'BCAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BCAS1 MUTATED	0	0	1	3	1	0
BCAS1 WILD-TYPE	17	32	12	29	15	7

'SERTAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1593. Gene #161: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SERTAD1 MUTATED	1	2	1	2
SERTAD1 WILD-TYPE	18	51	29	22

'SERTAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1594. Gene #161: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SERTAD1 MUTATED	3	0	2	1
SERTAD1 WILD-TYPE	32	30	32	25

'SERTAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S1595. Gene #161: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SERTAD1 MUTATED	4	0	0	1	0
SERTAD1 WILD-TYPE	25	18	13	8	13

'SERTAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1596. Gene #161: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SERTAD1 MUTATED	5	0	0	0	0
SERTAD1 WILD-TYPE	27	18	12	10	10

'SERTAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S1597. Gene #161: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SERTAD1 MUTATED	2	1	1	1	1
SERTAD1 WILD-TYPE	24	19	27	24	19

'SERTAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1598. Gene #161: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SERTAD1 MUTATED	2	4	0
SERTAD1 WILD-TYPE	46	49	18

'SERTAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S1599. Gene #161: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SERTAD1 MUTATED	2	1	1	1	1
SERTAD1 WILD-TYPE	35	30	16	20	12

'SERTAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1600. Gene #161: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SERTAD1 MUTATED	6	0	0
SERTAD1 WILD-TYPE	65	27	21

'SERTAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S1601. Gene #161: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SERTAD1 MUTATED	0	1	1	0	3	1	0
SERTAD1 WILD-TYPE	18	7	9	8	33	24	12

'SERTAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1602. Gene #161: 'SERTAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SERTAD1 MUTATED	2	2	1	1	0	0
SERTAD1 WILD-TYPE	15	30	12	31	16	7

'GLCCI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S1603. Gene #162: 'GLCCI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GLCCI1 MUTATED	1	2	3	0
GLCCI1 WILD-TYPE	18	51	27	24

'GLCCI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1604. Gene #162: 'GLCCI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GLCCI1 MUTATED	3	1	0	2
GLCCI1 WILD-TYPE	32	29	34	24

'GLCCI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1605. Gene #162: 'GLCCI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GLCCI1 MUTATED	1	1	0	1	1
GLCCI1 WILD-TYPE	28	17	13	8	12

'GLCCI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1606. Gene #162: 'GLCCI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GLCCI1 MUTATED	2	1	1	0	0
GLCCI1 WILD-TYPE	30	17	11	10	10

'GLCCI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 1

Table S1607. Gene #162: 'GLCCI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GLCCI1 MUTATED	0	1	0	3	2
GLCCI1 WILD-TYPE	26	19	28	22	18

'GLCCI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1608. Gene #162: 'GLCCI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GLCCI1 MUTATED	3	3	0
GLCCI1 WILD-TYPE	45	50	18

'GLCCI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S1609. Gene #162: 'GLCCI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GLCCI1 MUTATED	0	2	1	2	1
GLCCI1 WILD-TYPE	37	29	16	19	12

'GLCCI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1610. Gene #162: 'GLCCI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GLCCI1 MUTATED	3	2	1
GLCCI1 WILD-TYPE	68	25	20

'GLCCI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 1

Table S1611. Gene #162: 'GLCCI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GLCCI1 MUTATED	1	0	1	2	0	1	0
GLCCI1 WILD-TYPE	17	8	9	6	36	24	12

'GLCCI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1612. Gene #162: 'GLCCI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GLCCI1 MUTATED	0	0	2	2	1	0
GLCCI1 WILD-TYPE	17	32	11	30	15	7

'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1613. Gene #163: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
WASF3 MUTATED	1	3	1	3
WASF3 WILD-TYPE	18	50	29	21

'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S1614. Gene #163: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
WASF3 MUTATED	2	1	3	2
WASF3 WILD-TYPE	33	29	31	24

'WASF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1615. Gene #163: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
WASF3 MUTATED	3	2	0	1	1
WASF3 WILD-TYPE	26	16	13	8	12

'WASF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S1616. Gene #163: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
WASF3 MUTATED	4	2	1	0	0
WASF3 WILD-TYPE	28	16	11	10	10

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1617. Gene #163: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
WASF3 MUTATED	2	2	2	0	2
WASF3 WILD-TYPE	24	18	26	25	18

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1618. Gene #163: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
WASF3 MUTATED	3	4	1
WASF3 WILD-TYPE	45	49	17

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S1619. Gene #163: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
WASF3 MUTATED	2	2	1	1	2
WASF3 WILD-TYPE	35	29	16	20	11

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S1620. Gene #163: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
WASF3 MUTATED	6	1	1
WASF3 WILD-TYPE	65	26	20

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1621. Gene #163: 'WASF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
WASF3 MUTATED	2	0	0	2	3	1	0
WASF3 WILD-TYPE	16	8	10	6	33	24	12

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1622. Gene #163: 'WASF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
WASF3 MUTATED	1	3	1	2	1	0
WASF3 WILD-TYPE	16	29	12	30	15	7

'WDR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 1

Table S1623. Gene #164: 'WDR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
WDR5 MUTATED	0	0	2	2
WDR5 WILD-TYPE	19	53	28	22

'WDR5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 1

Table S1624. Gene #164: 'WDR5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
WDR5 MUTATED	0	3	0	1
WDR5 WILD-TYPE	35	27	34	25

'WDR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0804 (Fisher's exact test), Q value = 1

Table S1625. Gene #164: 'WDR5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
WDR5 MUTATED	0	2	0	2	0
WDR5 WILD-TYPE	26	18	28	23	20

'WDR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 1

Table S1626. Gene #164: 'WDR5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
WDR5 MUTATED	2	0	2
WDR5 WILD-TYPE	46	53	16

Figure S82. Get High-res Image Gene #164: 'WDR5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WDR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1627. Gene #164: 'WDR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
WDR5 MUTATED	0	1	1	1	1
WDR5 WILD-TYPE	37	30	16	20	12

'WDR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S1628. Gene #164: 'WDR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
WDR5 MUTATED	0	2	2
WDR5 WILD-TYPE	71	25	19

Figure S83. Get High-res Image Gene #164: 'WDR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WDR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1629. Gene #164: 'WDR5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
WDR5 MUTATED	0	0	1	0	1	1	1
WDR5 WILD-TYPE	18	8	9	8	35	24	11

'WDR5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S1630. Gene #164: 'WDR5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
WDR5 MUTATED	0	0	0	2	1	1
WDR5 WILD-TYPE	17	32	13	30	15	6

'FGF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1631. Gene #165: 'FGF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FGF10 MUTATED	2	2	0	2
FGF10 WILD-TYPE	17	51	30	22

'FGF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S1632. Gene #165: 'FGF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FGF10 MUTATED	2	0	3	1
FGF10 WILD-TYPE	33	30	31	25

'FGF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1633. Gene #165: 'FGF10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FGF10 MUTATED	3	1	0	1	0
FGF10 WILD-TYPE	26	17	13	8	13

'FGF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1634. Gene #165: 'FGF10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FGF10 MUTATED	3	0	0	1	1
FGF10 WILD-TYPE	29	18	12	9	9

'FGF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S1635. Gene #165: 'FGF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FGF10 MUTATED	1	1	1	2	1
FGF10 WILD-TYPE	25	19	27	23	19

'FGF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1636. Gene #165: 'FGF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FGF10 MUTATED	3	3	0
FGF10 WILD-TYPE	45	50	18

'FGF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S1637. Gene #165: 'FGF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FGF10 MUTATED	3	1	1	1	0
FGF10 WILD-TYPE	34	30	16	20	13

'FGF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1638. Gene #165: 'FGF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FGF10 MUTATED	5	0	1
FGF10 WILD-TYPE	66	27	20

'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1639. Gene #165: 'FGF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FGF10 MUTATED	1	0	1	0	3	1	0
FGF10 WILD-TYPE	17	8	9	8	33	24	12

'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S1640. Gene #165: 'FGF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FGF10 MUTATED	0	3	0	2	1	0
FGF10 WILD-TYPE	17	29	13	30	15	7

'FAM155B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1641. Gene #166: 'FAM155B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FAM155B MUTATED	0	2	1	1
FAM155B WILD-TYPE	19	51	29	23

'FAM155B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 1

Table S1642. Gene #166: 'FAM155B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FAM155B MUTATED	0	3	1	0
FAM155B WILD-TYPE	35	27	33	26

'FAM155B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S1643. Gene #166: 'FAM155B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FAM155B MUTATED	1	1	0	1	0
FAM155B WILD-TYPE	25	19	28	24	20

'FAM155B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1644. Gene #166: 'FAM155B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FAM155B MUTATED	2	0	1
FAM155B WILD-TYPE	46	53	17

'FAM155B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S1645. Gene #166: 'FAM155B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FAM155B MUTATED	1	0	1	0	1
FAM155B WILD-TYPE	36	31	16	21	12

'FAM155B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S1646. Gene #166: 'FAM155B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FAM155B MUTATED	1	2	0
FAM155B WILD-TYPE	70	25	21

'FAM155B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1647. Gene #166: 'FAM155B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FAM155B MUTATED	1	0	0	0	1	0	1
FAM155B WILD-TYPE	17	8	10	8	35	25	11

'FAM155B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S1648. Gene #166: 'FAM155B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FAM155B MUTATED	1	0	0	1	0	1
FAM155B WILD-TYPE	16	32	13	31	16	6

'RBM12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1649. Gene #167: 'RBM12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RBM12 MUTATED	1	4	1	0
RBM12 WILD-TYPE	18	49	29	24

'RBM12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S1650. Gene #167: 'RBM12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RBM12 MUTATED	1	0	4	1
RBM12 WILD-TYPE	34	30	30	25

'RBM12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S1651. Gene #167: 'RBM12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RBM12 MUTATED	1	1	1	0	2
RBM12 WILD-TYPE	28	17	12	9	11

'RBM12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S1652. Gene #167: 'RBM12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RBM12 MUTATED	1	2	0	0	2
RBM12 WILD-TYPE	31	16	12	10	8

'RBM12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1653. Gene #167: 'RBM12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RBM12 MUTATED	3	0	2	0	1
RBM12 WILD-TYPE	23	20	26	25	19

'RBM12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1654. Gene #167: 'RBM12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RBM12 MUTATED	2	4	0
RBM12 WILD-TYPE	46	49	18

'RBM12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S1655. Gene #167: 'RBM12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RBM12 MUTATED	4	1	0	1	0
RBM12 WILD-TYPE	33	30	17	20	13

'RBM12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1656. Gene #167: 'RBM12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RBM12 MUTATED	5	1	0
RBM12 WILD-TYPE	66	26	21

'RBM12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1657. Gene #167: 'RBM12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RBM12 MUTATED	1	0	0	0	4	1	0
RBM12 WILD-TYPE	17	8	10	8	32	24	12

'RBM12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1658. Gene #167: 'RBM12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RBM12 MUTATED	1	3	0	1	1	0
RBM12 WILD-TYPE	16	29	13	31	15	7

'ZNF337 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S1659. Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF337 MUTATED	2	5	3	0
ZNF337 WILD-TYPE	17	48	27	24

'ZNF337 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1660. Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF337 MUTATED	4	3	2	1
ZNF337 WILD-TYPE	31	27	32	25

'ZNF337 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S1661. Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF337 MUTATED	4	1	0	2	0
ZNF337 WILD-TYPE	25	17	13	7	13

'ZNF337 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1662. Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF337 MUTATED	5	1	0	1	0
ZNF337 WILD-TYPE	27	17	12	9	10

'ZNF337 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S1663. Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF337 MUTATED	3	1	1	4	1
ZNF337 WILD-TYPE	23	19	27	21	19

'ZNF337 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 1

Table S1664. Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF337 MUTATED	7	1	2
ZNF337 WILD-TYPE	41	52	16

Figure S84. Get High-res Image Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1665. Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF337 MUTATED	4	1	2	2	1
ZNF337 WILD-TYPE	33	30	15	19	12

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S1666. Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF337 MUTATED	5	4	1
ZNF337 WILD-TYPE	66	23	20

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S1667. Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF337 MUTATED	1	0	2	0	2	3	2
ZNF337 WILD-TYPE	17	8	8	8	34	22	10

'ZNF337 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1668. Gene #168: 'ZNF337 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF337 MUTATED	1	2	0	5	1	1
ZNF337 WILD-TYPE	16	30	13	27	15	6

'C16ORF46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1669. Gene #169: 'C16ORF46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C16ORF46 MUTATED	1	0	2	1
C16ORF46 WILD-TYPE	18	53	28	23

'C16ORF46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S1670. Gene #169: 'C16ORF46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C16ORF46 MUTATED	2	0	0	2
C16ORF46 WILD-TYPE	33	30	34	24

'C16ORF46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1671. Gene #169: 'C16ORF46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C16ORF46 MUTATED	0	1	0	1	2
C16ORF46 WILD-TYPE	26	19	28	24	18

'C16ORF46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S1672. Gene #169: 'C16ORF46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C16ORF46 MUTATED	1	1	2
C16ORF46 WILD-TYPE	47	52	16

'C16ORF46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S1673. Gene #169: 'C16ORF46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C16ORF46 MUTATED	0	2	0	1	1
C16ORF46 WILD-TYPE	37	29	17	20	12

'C16ORF46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1674. Gene #169: 'C16ORF46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C16ORF46 MUTATED	2	0	2
C16ORF46 WILD-TYPE	69	27	19

'C16ORF46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1675. Gene #169: 'C16ORF46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C16ORF46 MUTATED	0	0	1	1	0	1	1
C16ORF46 WILD-TYPE	18	8	9	7	36	24	11

'C16ORF46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S1676. Gene #169: 'C16ORF46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C16ORF46 MUTATED	1	0	1	1	1	0
C16ORF46 WILD-TYPE	16	32	12	31	15	7

'TAOK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S1677. Gene #170: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TAOK2 MUTATED	1	3	3	1
TAOK2 WILD-TYPE	18	50	27	23

'TAOK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1678. Gene #170: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TAOK2 MUTATED	3	0	3	2
TAOK2 WILD-TYPE	32	30	31	24

'TAOK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S1679. Gene #170: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TAOK2 MUTATED	1	0	2	1	2
TAOK2 WILD-TYPE	28	18	11	8	11

'TAOK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S1680. Gene #170: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TAOK2 MUTATED	3	0	2	0	1
TAOK2 WILD-TYPE	29	18	10	10	9

'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1681. Gene #170: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TAOK2 MUTATED	0	1	4	1	2
TAOK2 WILD-TYPE	26	19	24	24	18

'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1682. Gene #170: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TAOK2 MUTATED	3	2	3
TAOK2 WILD-TYPE	45	51	15

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S1683. Gene #170: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TAOK2 MUTATED	1	3	1	2	1
TAOK2 WILD-TYPE	36	28	16	19	12

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S1684. Gene #170: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TAOK2 MUTATED	5	1	2
TAOK2 WILD-TYPE	66	26	19

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S1685. Gene #170: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TAOK2 MUTATED	1	0	1	1	2	2	1
TAOK2 WILD-TYPE	17	8	9	7	34	23	11

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S1686. Gene #170: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TAOK2 MUTATED	1	3	0	2	2	0
TAOK2 WILD-TYPE	16	29	13	30	14	7

'DHX9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 1

Table S1687. Gene #171: 'DHX9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DHX9 MUTATED	0	1	3	3
DHX9 WILD-TYPE	19	52	27	21

'DHX9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S1688. Gene #171: 'DHX9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DHX9 MUTATED	3	1	0	3
DHX9 WILD-TYPE	32	29	34	23

'DHX9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S1689. Gene #171: 'DHX9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DHX9 MUTATED	2	0	0	2	0
DHX9 WILD-TYPE	27	18	13	7	13

'DHX9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1690. Gene #171: 'DHX9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DHX9 MUTATED	3	0	0	1	0
DHX9 WILD-TYPE	29	18	12	9	10

'DHX9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 1

Table S1691. Gene #171: 'DHX9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DHX9 MUTATED	0	0	1	3	3
DHX9 WILD-TYPE	26	20	27	22	17

'DHX9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1692. Gene #171: 'DHX9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DHX9 MUTATED	4	2	1
DHX9 WILD-TYPE	44	51	17

'DHX9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1693. Gene #171: 'DHX9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DHX9 MUTATED	1	2	1	2	1
DHX9 WILD-TYPE	36	29	16	19	12

'DHX9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1694. Gene #171: 'DHX9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DHX9 MUTATED	4	2	1
DHX9 WILD-TYPE	67	25	20

'DHX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S1695. Gene #171: 'DHX9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DHX9 MUTATED	1	0	1	1	2	2	0
DHX9 WILD-TYPE	17	8	9	7	34	23	12

'DHX9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S1696. Gene #171: 'DHX9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DHX9 MUTATED	0	1	1	3	2	0
DHX9 WILD-TYPE	17	31	12	29	14	7

'ZNF608 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S1697. Gene #172: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF608 MUTATED	0	5	3	0
ZNF608 WILD-TYPE	19	48	27	24

'ZNF608 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1698. Gene #172: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF608 MUTATED	4	0	2	2
ZNF608 WILD-TYPE	31	30	32	24

'ZNF608 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S1699. Gene #172: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF608 MUTATED	1	0	0	1	2
ZNF608 WILD-TYPE	28	18	13	8	11

'ZNF608 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1700. Gene #172: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF608 MUTATED	2	0	1	0	1
ZNF608 WILD-TYPE	30	18	11	10	9

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S1701. Gene #172: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF608 MUTATED	3	0	2	1	2
ZNF608 WILD-TYPE	23	20	26	24	18

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S1702. Gene #172: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF608 MUTATED	2	6	0
ZNF608 WILD-TYPE	46	47	18

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1703. Gene #172: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF608 MUTATED	2	3	0	2	1
ZNF608 WILD-TYPE	35	28	17	19	12

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S1704. Gene #172: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF608 MUTATED	7	0	1
ZNF608 WILD-TYPE	64	27	20

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S1705. Gene #172: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF608 MUTATED	0	1	2	1	2	1	1
ZNF608 WILD-TYPE	18	7	8	7	34	24	11

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1706. Gene #172: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF608 MUTATED	2	1	2	2	1	0
ZNF608 WILD-TYPE	15	31	11	30	15	7

'SLITRK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S1707. Gene #173: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLITRK5 MUTATED	4	5	5	1
SLITRK5 WILD-TYPE	15	48	25	23

'SLITRK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1708. Gene #173: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLITRK5 MUTATED	6	5	3	1
SLITRK5 WILD-TYPE	29	25	31	25

'SLITRK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S1709. Gene #173: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLITRK5 MUTATED	3	1	3	1	0
SLITRK5 WILD-TYPE	26	17	10	8	13

'SLITRK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S1710. Gene #173: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLITRK5 MUTATED	4	1	2	0	1
SLITRK5 WILD-TYPE	28	17	10	10	9

'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1711. Gene #173: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLITRK5 MUTATED	2	4	3	4	2
SLITRK5 WILD-TYPE	24	16	25	21	18

'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S1712. Gene #173: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLITRK5 MUTATED	7	6	2
SLITRK5 WILD-TYPE	41	47	16

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1713. Gene #173: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLITRK5 MUTATED	3	3	3	5	1
SLITRK5 WILD-TYPE	34	28	14	16	12

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1714. Gene #173: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLITRK5 MUTATED	9	5	1
SLITRK5 WILD-TYPE	62	22	20

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S1715. Gene #173: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLITRK5 MUTATED	4	1	1	1	2	2	3
SLITRK5 WILD-TYPE	14	7	9	7	34	23	9

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1716. Gene #173: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLITRK5 MUTATED	2	2	2	5	1	2
SLITRK5 WILD-TYPE	15	30	11	27	15	5

'KIAA0802 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S1717. Gene #174: 'KIAA0802 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KIAA0802 MUTATED	0	1	3	1
KIAA0802 WILD-TYPE	19	52	27	23

'KIAA0802 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1718. Gene #174: 'KIAA0802 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KIAA0802 MUTATED	3	1	0	1
KIAA0802 WILD-TYPE	32	29	34	25

'KIAA0802 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S1719. Gene #174: 'KIAA0802 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KIAA0802 MUTATED	3	1	0	1	0
KIAA0802 WILD-TYPE	23	19	28	24	20

'KIAA0802 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1720. Gene #174: 'KIAA0802 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KIAA0802 MUTATED	1	3	1
KIAA0802 WILD-TYPE	47	50	17

'KIAA0802 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S1721. Gene #174: 'KIAA0802 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KIAA0802 MUTATED	2	0	1	1	1
KIAA0802 WILD-TYPE	35	31	16	20	12

'KIAA0802 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1722. Gene #174: 'KIAA0802 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KIAA0802 MUTATED	3	1	1
KIAA0802 WILD-TYPE	68	26	20

'KIAA0802 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S1723. Gene #174: 'KIAA0802 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KIAA0802 MUTATED	0	1	1	0	1	1	0
KIAA0802 WILD-TYPE	18	7	9	8	35	24	12

'KIAA0802 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S1724. Gene #174: 'KIAA0802 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KIAA0802 MUTATED	0	2	0	1	1	0
KIAA0802 WILD-TYPE	17	30	13	31	15	7

'CTRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1725. Gene #175: 'CTRL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CTRL MUTATED	2	1	1	1
CTRL WILD-TYPE	17	52	29	23

'CTRL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0986 (Fisher's exact test), Q value = 1

Table S1726. Gene #175: 'CTRL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CTRL MUTATED	3	0	0	2
CTRL WILD-TYPE	32	30	34	24

'CTRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1727. Gene #175: 'CTRL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CTRL MUTATED	1	0	1	1	2
CTRL WILD-TYPE	25	20	27	24	18

'CTRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1728. Gene #175: 'CTRL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CTRL MUTATED	2	3	0
CTRL WILD-TYPE	46	50	18

'CTRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S1729. Gene #175: 'CTRL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CTRL MUTATED	1	3	0	1	0
CTRL WILD-TYPE	36	28	17	20	13

'CTRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1730. Gene #175: 'CTRL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CTRL MUTATED	5	0	0
CTRL WILD-TYPE	66	27	21

'CTRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.081 (Fisher's exact test), Q value = 1

Table S1731. Gene #175: 'CTRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CTRL MUTATED	1	0	2	1	0	1	0
CTRL WILD-TYPE	17	8	8	7	36	24	12

'CTRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S1732. Gene #175: 'CTRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CTRL MUTATED	1	2	1	1	0	0
CTRL WILD-TYPE	16	30	12	31	16	7

'DHX36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1733. Gene #176: 'DHX36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DHX36 MUTATED	2	6	1	1
DHX36 WILD-TYPE	17	47	29	23

'DHX36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1734. Gene #176: 'DHX36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DHX36 MUTATED	4	2	2	2
DHX36 WILD-TYPE	31	28	32	24

'DHX36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S1735. Gene #176: 'DHX36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DHX36 MUTATED	2	3	0	2	0
DHX36 WILD-TYPE	27	15	13	7	13

'DHX36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1736. Gene #176: 'DHX36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DHX36 MUTATED	3	2	0	1	1
DHX36 WILD-TYPE	29	16	12	9	9

'DHX36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1737. Gene #176: 'DHX36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DHX36 MUTATED	3	1	1	4	1
DHX36 WILD-TYPE	23	19	27	21	19

'DHX36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S1738. Gene #176: 'DHX36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DHX36 MUTATED	5	5	0
DHX36 WILD-TYPE	43	48	18

'DHX36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1739. Gene #176: 'DHX36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DHX36 MUTATED	5	1	2	1	1
DHX36 WILD-TYPE	32	30	15	20	12

'DHX36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1740. Gene #176: 'DHX36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DHX36 MUTATED	6	3	1
DHX36 WILD-TYPE	65	24	20

'DHX36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 1

Table S1741. Gene #176: 'DHX36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DHX36 MUTATED	0	1	2	0	6	0	1
DHX36 WILD-TYPE	18	7	8	8	30	25	11

'DHX36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1742. Gene #176: 'DHX36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DHX36 MUTATED	1	4	0	4	1	0
DHX36 WILD-TYPE	16	28	13	28	15	7

'GTF3C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1743. Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GTF3C3 MUTATED	1	1	3	0
GTF3C3 WILD-TYPE	18	52	27	24

'GTF3C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1744. Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GTF3C3 MUTATED	0	1	2	2
GTF3C3 WILD-TYPE	35	29	32	24

'GTF3C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S1745. Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GTF3C3 MUTATED	1	0	2	0	1
GTF3C3 WILD-TYPE	28	18	11	9	12

'GTF3C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S1746. Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GTF3C3 MUTATED	1	0	2	0	1
GTF3C3 WILD-TYPE	31	18	10	10	9

'GTF3C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1747. Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GTF3C3 MUTATED	1	1	1	0	2
GTF3C3 WILD-TYPE	25	19	27	25	18

'GTF3C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S1748. Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GTF3C3 MUTATED	2	1	2
GTF3C3 WILD-TYPE	46	52	16

'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1749. Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GTF3C3 MUTATED	1	3	0	1	0
GTF3C3 WILD-TYPE	36	28	17	20	13

'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S1750. Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GTF3C3 MUTATED	3	0	2
GTF3C3 WILD-TYPE	68	27	19

'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1751. Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GTF3C3 MUTATED	0	1	0	0	1	2	1
GTF3C3 WILD-TYPE	18	7	10	8	35	23	11

'GTF3C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 1

Table S1752. Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GTF3C3 MUTATED	2	0	0	0	2	1
GTF3C3 WILD-TYPE	15	32	13	32	14	6

Figure S85. Get High-res Image Gene #177: 'GTF3C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OTX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1753. Gene #178: 'OTX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OTX1 MUTATED	2	2	3	0
OTX1 WILD-TYPE	17	51	27	24

'OTX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S1754. Gene #178: 'OTX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OTX1 MUTATED	3	1	3	0
OTX1 WILD-TYPE	32	29	31	26

'OTX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S1755. Gene #178: 'OTX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OTX1 MUTATED	1	1	2	2	1
OTX1 WILD-TYPE	28	17	11	7	12

'OTX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1756. Gene #178: 'OTX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OTX1 MUTATED	3	0	2	1	1
OTX1 WILD-TYPE	29	18	10	9	9

'OTX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1757. Gene #178: 'OTX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OTX1 MUTATED	1	1	3	2	0
OTX1 WILD-TYPE	25	19	25	23	20

'OTX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1758. Gene #178: 'OTX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OTX1 MUTATED	3	3	1
OTX1 WILD-TYPE	45	50	17

'OTX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S1759. Gene #178: 'OTX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OTX1 MUTATED	4	1	0	1	1
OTX1 WILD-TYPE	33	30	17	20	12

'OTX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1760. Gene #178: 'OTX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OTX1 MUTATED	5	1	1
OTX1 WILD-TYPE	66	26	20

'OTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S1761. Gene #178: 'OTX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OTX1 MUTATED	0	2	1	0	3	1	0
OTX1 WILD-TYPE	18	6	9	8	33	24	12

'OTX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.982 (Fisher's exact test), Q value = 1

Table S1762. Gene #178: 'OTX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OTX1 MUTATED	1	3	0	2	1	0
OTX1 WILD-TYPE	16	29	13	30	15	7

'MTMR15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1763. Gene #179: 'MTMR15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MTMR15 MUTATED	3	3	1	1
MTMR15 WILD-TYPE	16	50	29	23

'MTMR15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S1764. Gene #179: 'MTMR15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MTMR15 MUTATED	3	2	3	0
MTMR15 WILD-TYPE	32	28	31	26

'MTMR15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1765. Gene #179: 'MTMR15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MTMR15 MUTATED	2	1	0	2	1
MTMR15 WILD-TYPE	27	17	13	7	12

'MTMR15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S1766. Gene #179: 'MTMR15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MTMR15 MUTATED	4	1	1	0	0
MTMR15 WILD-TYPE	28	17	11	10	10

'MTMR15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1767. Gene #179: 'MTMR15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MTMR15 MUTATED	3	1	1	3	0
MTMR15 WILD-TYPE	23	19	27	22	20

'MTMR15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S1768. Gene #179: 'MTMR15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MTMR15 MUTATED	6	2	0
MTMR15 WILD-TYPE	42	51	18

'MTMR15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S1769. Gene #179: 'MTMR15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MTMR15 MUTATED	5	0	1	1	1
MTMR15 WILD-TYPE	32	31	16	20	12

'MTMR15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1770. Gene #179: 'MTMR15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MTMR15 MUTATED	6	2	0
MTMR15 WILD-TYPE	65	25	21

'MTMR15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1771. Gene #179: 'MTMR15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MTMR15 MUTATED	2	0	1	0	4	1	0
MTMR15 WILD-TYPE	16	8	9	8	32	24	12

'MTMR15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1772. Gene #179: 'MTMR15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MTMR15 MUTATED	1	3	0	4	0	0
MTMR15 WILD-TYPE	16	29	13	28	16	7

'IYD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S1773. Gene #180: 'IYD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IYD MUTATED	1	2	2	1
IYD WILD-TYPE	18	51	28	23

'IYD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S1774. Gene #180: 'IYD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IYD MUTATED	1	2	2	1
IYD WILD-TYPE	34	28	32	25

'IYD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1775. Gene #180: 'IYD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
IYD MUTATED	2	0	1	0	2
IYD WILD-TYPE	27	18	12	9	11

'IYD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1776. Gene #180: 'IYD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
IYD MUTATED	2	1	1	0	1
IYD WILD-TYPE	30	17	11	10	9

'IYD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S1777. Gene #180: 'IYD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IYD MUTATED	2	0	1	1	1
IYD WILD-TYPE	24	20	27	24	19

'IYD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S1778. Gene #180: 'IYD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IYD MUTATED	3	2	0
IYD WILD-TYPE	45	51	18

'IYD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S1779. Gene #180: 'IYD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IYD MUTATED	3	1	0	1	0
IYD WILD-TYPE	34	30	17	20	13

'IYD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1780. Gene #180: 'IYD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IYD MUTATED	4	1	0
IYD WILD-TYPE	67	26	21

'IYD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S1781. Gene #180: 'IYD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IYD MUTATED	1	0	0	1	3	0	0
IYD WILD-TYPE	17	8	10	7	33	25	12

'IYD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1782. Gene #180: 'IYD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IYD MUTATED	1	2	1	1	0	0
IYD WILD-TYPE	16	30	12	31	16	7

'GTF2F1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S1783. Gene #181: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GTF2F1 MUTATED	0	1	3	1
GTF2F1 WILD-TYPE	19	52	27	23

'GTF2F1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1784. Gene #181: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GTF2F1 MUTATED	3	1	0	1
GTF2F1 WILD-TYPE	32	29	34	25

'GTF2F1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S1785. Gene #181: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GTF2F1 MUTATED	1	2	0	1	0
GTF2F1 WILD-TYPE	28	16	13	8	13

'GTF2F1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S1786. Gene #181: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GTF2F1 MUTATED	3	1	0	0	0
GTF2F1 WILD-TYPE	29	17	12	10	10

'GTF2F1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1787. Gene #181: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GTF2F1 MUTATED	1	1	1	2	0
GTF2F1 WILD-TYPE	25	19	27	23	20

'GTF2F1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1788. Gene #181: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GTF2F1 MUTATED	3	1	1
GTF2F1 WILD-TYPE	45	52	17

'GTF2F1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S1789. Gene #181: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GTF2F1 MUTATED	2	0	0	2	1
GTF2F1 WILD-TYPE	35	31	17	19	12

'GTF2F1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1790. Gene #181: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GTF2F1 MUTATED	3	1	1
GTF2F1 WILD-TYPE	68	26	20

'GTF2F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S1791. Gene #181: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GTF2F1 MUTATED	0	1	1	0	1	1	0
GTF2F1 WILD-TYPE	18	7	9	8	35	24	12

'GTF2F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1792. Gene #181: 'GTF2F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GTF2F1 MUTATED	0	2	0	1	1	0
GTF2F1 WILD-TYPE	17	30	13	31	15	7

'DIDO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00362 (Fisher's exact test), Q value = 1

Table S1793. Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DIDO1 MUTATED	0	3	9	2
DIDO1 WILD-TYPE	19	50	21	22

Figure S86. Get High-res Image Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DIDO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S1794. Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DIDO1 MUTATED	7	3	2	2
DIDO1 WILD-TYPE	28	27	32	24

'DIDO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S1795. Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DIDO1 MUTATED	3	3	2	1	1
DIDO1 WILD-TYPE	26	15	11	8	12

'DIDO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S1796. Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DIDO1 MUTATED	5	3	0	0	2
DIDO1 WILD-TYPE	27	15	12	10	8

'DIDO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S1797. Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DIDO1 MUTATED	5	2	3	3	1
DIDO1 WILD-TYPE	21	18	25	22	19

'DIDO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1798. Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DIDO1 MUTATED	4	7	3
DIDO1 WILD-TYPE	44	46	15

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1799. Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DIDO1 MUTATED	5	4	1	2	2
DIDO1 WILD-TYPE	32	27	16	19	11

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1800. Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DIDO1 MUTATED	8	4	2
DIDO1 WILD-TYPE	63	23	19

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1801. Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DIDO1 MUTATED	1	1	2	2	3	3	1
DIDO1 WILD-TYPE	17	7	8	6	33	22	11

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S1802. Gene #182: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DIDO1 MUTATED	0	5	1	4	2	1
DIDO1 WILD-TYPE	17	27	12	28	14	6

'GNL3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S1803. Gene #183: 'GNL3L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GNL3L MUTATED	2	1	2	0
GNL3L WILD-TYPE	17	52	28	24

'GNL3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 1

Table S1804. Gene #183: 'GNL3L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GNL3L MUTATED	0	0	2	3
GNL3L WILD-TYPE	35	30	32	23

'GNL3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S1805. Gene #183: 'GNL3L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GNL3L MUTATED	1	2	0	0	0
GNL3L WILD-TYPE	28	16	13	9	13

'GNL3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S1806. Gene #183: 'GNL3L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GNL3L MUTATED	1	2	0	0	0
GNL3L WILD-TYPE	31	16	12	10	10

'GNL3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1807. Gene #183: 'GNL3L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GNL3L MUTATED	2	0	1	0	2
GNL3L WILD-TYPE	24	20	27	25	18

'GNL3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S1808. Gene #183: 'GNL3L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GNL3L MUTATED	1	3	1
GNL3L WILD-TYPE	47	50	17

'GNL3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S1809. Gene #183: 'GNL3L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GNL3L MUTATED	2	3	0	0	0
GNL3L WILD-TYPE	35	28	17	21	13

'GNL3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1810. Gene #183: 'GNL3L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GNL3L MUTATED	3	1	1
GNL3L WILD-TYPE	68	26	20

'GNL3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1811. Gene #183: 'GNL3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GNL3L MUTATED	0	0	1	0	2	2	0
GNL3L WILD-TYPE	18	8	9	8	34	23	12

'GNL3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S1812. Gene #183: 'GNL3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GNL3L MUTATED	0	3	0	0	2	0
GNL3L WILD-TYPE	17	29	13	32	14	7

'ZC3H7B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S1813. Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZC3H7B MUTATED	2	1	2	2
ZC3H7B WILD-TYPE	17	52	28	22

'ZC3H7B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 1

Table S1814. Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZC3H7B MUTATED	2	0	1	4
ZC3H7B WILD-TYPE	33	30	33	22

'ZC3H7B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S1815. Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZC3H7B MUTATED	2	2	1	1	0
ZC3H7B WILD-TYPE	27	16	12	8	13

'ZC3H7B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1816. Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZC3H7B MUTATED	3	2	1	0	0
ZC3H7B WILD-TYPE	29	16	11	10	10

'ZC3H7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1817. Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZC3H7B MUTATED	0	1	2	1	3
ZC3H7B WILD-TYPE	26	19	26	24	17

'ZC3H7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S1818. Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZC3H7B MUTATED	2	4	1
ZC3H7B WILD-TYPE	46	49	17

'ZC3H7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S1819. Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZC3H7B MUTATED	1	4	0	1	1
ZC3H7B WILD-TYPE	36	27	17	20	12

'ZC3H7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S1820. Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZC3H7B MUTATED	6	0	1
ZC3H7B WILD-TYPE	65	27	20

'ZC3H7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S1821. Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZC3H7B MUTATED	0	0	1	3	1	2	0
ZC3H7B WILD-TYPE	18	8	9	5	35	23	12

Figure S87. Get High-res Image Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZC3H7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S1822. Gene #184: 'ZC3H7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZC3H7B MUTATED	0	2	3	1	1	0
ZC3H7B WILD-TYPE	17	30	10	31	15	7

'COL4A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S1823. Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
COL4A4 MUTATED	2	3	4	0
COL4A4 WILD-TYPE	17	50	26	24

'COL4A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S1824. Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
COL4A4 MUTATED	2	2	3	2
COL4A4 WILD-TYPE	33	28	31	24

'COL4A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S1825. Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
COL4A4 MUTATED	0	1	0	1	2
COL4A4 WILD-TYPE	29	17	13	8	11

'COL4A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1826. Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
COL4A4 MUTATED	1	1	1	0	1
COL4A4 WILD-TYPE	31	17	11	10	9

'COL4A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1827. Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
COL4A4 MUTATED	2	0	2	3	2
COL4A4 WILD-TYPE	24	20	26	22	18

'COL4A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1828. Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
COL4A4 MUTATED	4	5	0
COL4A4 WILD-TYPE	44	48	18

'COL4A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S1829. Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
COL4A4 MUTATED	2	2	2	3	0
COL4A4 WILD-TYPE	35	29	15	18	13

'COL4A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1830. Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
COL4A4 MUTATED	7	2	0
COL4A4 WILD-TYPE	64	25	21

'COL4A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 1

Table S1831. Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
COL4A4 MUTATED	0	0	2	2	4	0	0
COL4A4 WILD-TYPE	18	8	8	6	32	25	12

Figure S88. Get High-res Image Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'COL4A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1832. Gene #185: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
COL4A4 MUTATED	0	2	3	3	0	0
COL4A4 WILD-TYPE	17	30	10	29	16	7

'SYCP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S1833. Gene #186: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SYCP2 MUTATED	2	3	3	0
SYCP2 WILD-TYPE	17	50	27	24

'SYCP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1834. Gene #186: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SYCP2 MUTATED	2	3	2	1
SYCP2 WILD-TYPE	33	27	32	25

'SYCP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1835. Gene #186: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SYCP2 MUTATED	1	0	2	1	1
SYCP2 WILD-TYPE	28	18	11	8	12

'SYCP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1836. Gene #186: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SYCP2 MUTATED	2	0	2	0	1
SYCP2 WILD-TYPE	30	18	10	10	9

'SYCP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1837. Gene #186: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SYCP2 MUTATED	1	2	1	2	2
SYCP2 WILD-TYPE	25	18	27	23	18

'SYCP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S1838. Gene #186: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SYCP2 MUTATED	3	3	2
SYCP2 WILD-TYPE	45	50	16

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S1839. Gene #186: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SYCP2 MUTATED	2	2	1	2	1
SYCP2 WILD-TYPE	35	29	16	19	12

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1840. Gene #186: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SYCP2 MUTATED	4	1	3
SYCP2 WILD-TYPE	67	26	18

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S1841. Gene #186: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SYCP2 MUTATED	0	0	1	1	2	2	2
SYCP2 WILD-TYPE	18	8	9	7	34	23	10

'SYCP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S1842. Gene #186: 'SYCP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SYCP2 MUTATED	0	1	1	3	2	1
SYCP2 WILD-TYPE	17	31	12	29	14	6

'CNKSR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1843. Gene #187: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CNKSR2 MUTATED	1	5	4	1
CNKSR2 WILD-TYPE	18	48	26	23

'CNKSR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1844. Gene #187: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CNKSR2 MUTATED	4	3	2	2
CNKSR2 WILD-TYPE	31	27	32	24

'CNKSR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S1845. Gene #187: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CNKSR2 MUTATED	2	3	0	1	1
CNKSR2 WILD-TYPE	27	15	13	8	12

'CNKSR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1846. Gene #187: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CNKSR2 MUTATED	3	3	1	0	0
CNKSR2 WILD-TYPE	29	15	11	10	10

'CNKSR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S1847. Gene #187: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CNKSR2 MUTATED	2	2	2	4	1
CNKSR2 WILD-TYPE	24	18	26	21	19

'CNKSR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S1848. Gene #187: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CNKSR2 MUTATED	7	3	1
CNKSR2 WILD-TYPE	41	50	17

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S1849. Gene #187: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CNKSR2 MUTATED	4	2	1	3	1
CNKSR2 WILD-TYPE	33	29	16	18	12

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S1850. Gene #187: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CNKSR2 MUTATED	6	3	2
CNKSR2 WILD-TYPE	65	24	19

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S1851. Gene #187: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CNKSR2 MUTATED	2	0	2	0	4	3	0
CNKSR2 WILD-TYPE	16	8	8	8	32	22	12

'CNKSR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1852. Gene #187: 'CNKSR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CNKSR2 MUTATED	0	4	1	4	1	1
CNKSR2 WILD-TYPE	17	28	12	28	15	6

'OR5A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1853. Gene #188: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OR5A1 MUTATED	1	3	1	0
OR5A1 WILD-TYPE	18	50	29	24

'OR5A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1854. Gene #188: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OR5A1 MUTATED	2	1	2	0
OR5A1 WILD-TYPE	33	29	32	26

'OR5A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S1855. Gene #188: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OR5A1 MUTATED	1	0	0	1	1
OR5A1 WILD-TYPE	28	18	13	8	12

'OR5A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S1856. Gene #188: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OR5A1 MUTATED	2	0	1	0	0
OR5A1 WILD-TYPE	30	18	11	10	10

'OR5A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0948 (Fisher's exact test), Q value = 1

Table S1857. Gene #188: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OR5A1 MUTATED	2	0	0	3	0
OR5A1 WILD-TYPE	24	20	28	22	20

'OR5A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1858. Gene #188: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OR5A1 MUTATED	3	2	0
OR5A1 WILD-TYPE	45	51	18

'OR5A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S1859. Gene #188: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OR5A1 MUTATED	3	0	1	1	0
OR5A1 WILD-TYPE	34	31	16	20	13

'OR5A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1860. Gene #188: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OR5A1 MUTATED	4	1	0
OR5A1 WILD-TYPE	67	26	21

'OR5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S1861. Gene #188: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OR5A1 MUTATED	0	0	2	0	2	1	0
OR5A1 WILD-TYPE	18	8	8	8	34	24	12

'OR5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1862. Gene #188: 'OR5A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OR5A1 MUTATED	1	1	0	3	0	0
OR5A1 WILD-TYPE	16	31	13	29	16	7

'OSBPL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S1863. Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OSBPL3 MUTATED	1	3	3	1
OSBPL3 WILD-TYPE	18	50	27	23

'OSBPL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0635 (Fisher's exact test), Q value = 1

Table S1864. Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OSBPL3 MUTATED	3	1	0	4
OSBPL3 WILD-TYPE	32	29	34	22

'OSBPL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S1865. Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OSBPL3 MUTATED	0	1	0	1	1
OSBPL3 WILD-TYPE	29	17	13	8	12

'OSBPL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S1866. Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OSBPL3 MUTATED	2	0	0	0	1
OSBPL3 WILD-TYPE	30	18	12	10	9

'OSBPL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 1

Table S1867. Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OSBPL3 MUTATED	2	0	0	2	4
OSBPL3 WILD-TYPE	24	20	28	23	16

Figure S89. Get High-res Image Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OSBPL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S1868. Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OSBPL3 MUTATED	3	5	0
OSBPL3 WILD-TYPE	45	48	18

'OSBPL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S1869. Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OSBPL3 MUTATED	2	4	1	1	0
OSBPL3 WILD-TYPE	35	27	16	20	13

'OSBPL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1870. Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OSBPL3 MUTATED	7	1	0
OSBPL3 WILD-TYPE	64	26	21

'OSBPL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S1871. Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OSBPL3 MUTATED	0	1	2	1	2	2	0
OSBPL3 WILD-TYPE	18	7	8	7	34	23	12

'OSBPL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S1872. Gene #189: 'OSBPL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OSBPL3 MUTATED	1	1	3	2	1	0
OSBPL3 WILD-TYPE	16	31	10	30	15	7

'HSP90AB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S1873. Gene #190: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HSP90AB1 MUTATED	0	1	3	1
HSP90AB1 WILD-TYPE	19	52	27	23

'HSP90AB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1874. Gene #190: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HSP90AB1 MUTATED	1	3	0	1
HSP90AB1 WILD-TYPE	34	27	34	25

'HSP90AB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S1875. Gene #190: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HSP90AB1 MUTATED	0	1	1	2	1
HSP90AB1 WILD-TYPE	26	19	27	23	19

'HSP90AB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1876. Gene #190: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HSP90AB1 MUTATED	2	1	2
HSP90AB1 WILD-TYPE	46	52	16

'HSP90AB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1877. Gene #190: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HSP90AB1 MUTATED	1	1	2	0	1
HSP90AB1 WILD-TYPE	36	30	15	21	12

'HSP90AB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1878. Gene #190: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HSP90AB1 MUTATED	2	2	1
HSP90AB1 WILD-TYPE	69	25	20

'HSP90AB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S1879. Gene #190: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HSP90AB1 MUTATED	0	0	1	0	2	1	1
HSP90AB1 WILD-TYPE	18	8	9	8	34	24	11

'HSP90AB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1880. Gene #190: 'HSP90AB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HSP90AB1 MUTATED	1	1	0	2	1	0
HSP90AB1 WILD-TYPE	16	31	13	30	15	7

'PLAUR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S1881. Gene #191: 'PLAUR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PLAUR MUTATED	0	2	0	2
PLAUR WILD-TYPE	19	51	30	22

'PLAUR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1882. Gene #191: 'PLAUR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PLAUR MUTATED	1	1	1	1
PLAUR WILD-TYPE	34	29	33	25

'PLAUR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S1883. Gene #191: 'PLAUR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PLAUR MUTATED	1	0	0	1	1
PLAUR WILD-TYPE	25	20	28	24	19

'PLAUR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S1884. Gene #191: 'PLAUR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PLAUR MUTATED	2	0	1
PLAUR WILD-TYPE	46	53	17

'PLAUR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 1

Table S1885. Gene #191: 'PLAUR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PLAUR MUTATED	0	0	2	0	1
PLAUR WILD-TYPE	37	31	15	21	12

Figure S90. Get High-res Image Gene #191: 'PLAUR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLAUR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1886. Gene #191: 'PLAUR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PLAUR MUTATED	1	1	1
PLAUR WILD-TYPE	70	26	20

'PLAUR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1887. Gene #191: 'PLAUR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PLAUR MUTATED	1	0	0	1	1	0	0
PLAUR WILD-TYPE	17	8	10	7	35	25	12

'PLAUR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S1888. Gene #191: 'PLAUR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PLAUR MUTATED	1	0	0	1	1	0
PLAUR WILD-TYPE	16	32	13	31	15	7

'GPC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1889. Gene #192: 'GPC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GPC2 MUTATED	1	3	0	1
GPC2 WILD-TYPE	18	50	30	23

'GPC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S1890. Gene #192: 'GPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GPC2 MUTATED	0	2	3	0
GPC2 WILD-TYPE	35	28	31	26

'GPC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S1891. Gene #192: 'GPC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GPC2 MUTATED	2	0	0	0	1
GPC2 WILD-TYPE	27	18	13	9	12

'GPC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S1892. Gene #192: 'GPC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GPC2 MUTATED	1	0	1	1	0
GPC2 WILD-TYPE	31	18	11	9	10

'GPC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S1893. Gene #192: 'GPC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GPC2 MUTATED	2	1	1	1	0
GPC2 WILD-TYPE	24	19	27	24	20

'GPC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1894. Gene #192: 'GPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GPC2 MUTATED	2	2	1
GPC2 WILD-TYPE	46	51	17

'GPC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1895. Gene #192: 'GPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GPC2 MUTATED	1	0	2	2	0
GPC2 WILD-TYPE	36	31	15	19	13

'GPC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S1896. Gene #192: 'GPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GPC2 MUTATED	2	2	1
GPC2 WILD-TYPE	69	25	20

'GPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1897. Gene #192: 'GPC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GPC2 MUTATED	1	0	0	0	2	0	2
GPC2 WILD-TYPE	17	8	10	8	34	25	10

'GPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S1898. Gene #192: 'GPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GPC2 MUTATED	0	1	1	2	0	1
GPC2 WILD-TYPE	17	31	12	30	16	6

'ACBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1899. Gene #193: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ACBD3 MUTATED	0	1	2	1
ACBD3 WILD-TYPE	19	52	28	23

'ACBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1900. Gene #193: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ACBD3 MUTATED	1	1	1	1
ACBD3 WILD-TYPE	34	29	33	25

'ACBD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1901. Gene #193: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ACBD3 MUTATED	0	1	1	1	0
ACBD3 WILD-TYPE	29	17	12	8	13

'ACBD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1902. Gene #193: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ACBD3 MUTATED	1	1	0	0	1
ACBD3 WILD-TYPE	31	17	12	10	9

'ACBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S1903. Gene #193: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ACBD3 MUTATED	0	0	1	2	1
ACBD3 WILD-TYPE	26	20	27	23	19

'ACBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1904. Gene #193: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ACBD3 MUTATED	2	2	0
ACBD3 WILD-TYPE	46	51	18

'ACBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S1905. Gene #193: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ACBD3 MUTATED	1	2	0	1	0
ACBD3 WILD-TYPE	36	29	17	20	13

'ACBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1906. Gene #193: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ACBD3 MUTATED	3	1	0
ACBD3 WILD-TYPE	68	26	21

'ACBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1907. Gene #193: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ACBD3 MUTATED	0	0	1	1	1	1	0
ACBD3 WILD-TYPE	18	8	9	7	35	24	12

'ACBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S1908. Gene #193: 'ACBD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ACBD3 MUTATED	0	1	1	2	0	0
ACBD3 WILD-TYPE	17	31	12	30	16	7

'PURB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1909. Gene #194: 'PURB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PURB MUTATED	1	1	1	1
PURB WILD-TYPE	18	52	29	23

'PURB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S1910. Gene #194: 'PURB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PURB MUTATED	1	1	2	0
PURB WILD-TYPE	34	29	32	26

'PURB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1911. Gene #194: 'PURB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PURB MUTATED	2	0	1	1	0
PURB WILD-TYPE	24	20	27	24	20

'PURB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1912. Gene #194: 'PURB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PURB MUTATED	2	2	0
PURB WILD-TYPE	46	51	18

'PURB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1913. Gene #194: 'PURB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PURB MUTATED	2	0	1	1	0
PURB WILD-TYPE	35	31	16	20	13

'PURB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1914. Gene #194: 'PURB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PURB MUTATED	3	1	0
PURB WILD-TYPE	68	26	21

'PURB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S1915. Gene #194: 'PURB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PURB MUTATED	0	0	0	0	3	0	0
PURB WILD-TYPE	18	8	10	8	33	25	12

'PURB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1916. Gene #194: 'PURB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PURB MUTATED	0	2	0	1	0	0
PURB WILD-TYPE	17	30	13	31	16	7

'ABCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S1917. Gene #195: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ABCC2 MUTATED	0	3	3	0
ABCC2 WILD-TYPE	19	50	27	24

'ABCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 1

Table S1918. Gene #195: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ABCC2 MUTATED	4	0	0	2
ABCC2 WILD-TYPE	31	30	34	24

'ABCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S1919. Gene #195: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ABCC2 MUTATED	2	1	1	1	0
ABCC2 WILD-TYPE	27	17	12	8	13

'ABCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1920. Gene #195: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ABCC2 MUTATED	3	1	1	0	0
ABCC2 WILD-TYPE	29	17	11	10	10

'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S1921. Gene #195: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ABCC2 MUTATED	0	0	2	1	2
ABCC2 WILD-TYPE	26	20	26	24	18

'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1922. Gene #195: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ABCC2 MUTATED	2	2	1
ABCC2 WILD-TYPE	46	51	17

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S1923. Gene #195: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ABCC2 MUTATED	2	2	0	1	0
ABCC2 WILD-TYPE	35	29	17	20	13

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S1924. Gene #195: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ABCC2 MUTATED	4	0	1
ABCC2 WILD-TYPE	67	27	20

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S1925. Gene #195: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ABCC2 MUTATED	0	0	2	1	1	1	0
ABCC2 WILD-TYPE	18	8	8	7	35	24	12

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S1926. Gene #195: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ABCC2 MUTATED	1	1	1	1	1	0
ABCC2 WILD-TYPE	16	31	12	31	15	7

'KRT73 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 1

Table S1927. Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KRT73 MUTATED	0	0	2	3
KRT73 WILD-TYPE	19	53	28	21

Figure S91. Get High-res Image Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRT73 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1928. Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KRT73 MUTATED	1	2	1	1
KRT73 WILD-TYPE	34	28	33	25

'KRT73 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S1929. Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KRT73 MUTATED	2	1	1	1	0
KRT73 WILD-TYPE	27	17	12	8	13

'KRT73 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1930. Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KRT73 MUTATED	4	1	0	0	0
KRT73 WILD-TYPE	28	17	12	10	10

'KRT73 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 1

Table S1931. Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KRT73 MUTATED	0	2	0	3	0
KRT73 WILD-TYPE	26	18	28	22	20

Figure S92. Get High-res Image Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KRT73 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S1932. Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KRT73 MUTATED	3	1	1
KRT73 WILD-TYPE	45	52	17

'KRT73 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S1933. Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KRT73 MUTATED	1	0	2	1	1
KRT73 WILD-TYPE	36	31	15	20	12

'KRT73 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1934. Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KRT73 MUTATED	2	2	1
KRT73 WILD-TYPE	69	25	20

'KRT73 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1935. Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KRT73 MUTATED	2	0	1	0	0	2	0
KRT73 WILD-TYPE	16	8	9	8	36	23	12

'KRT73 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1936. Gene #196: 'KRT73 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KRT73 MUTATED	0	1	0	3	1	0
KRT73 WILD-TYPE	17	31	13	29	15	7

'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S1937. Gene #197: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SGOL2 MUTATED	0	4	1	2
SGOL2 WILD-TYPE	19	49	29	22

'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S1938. Gene #197: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SGOL2 MUTATED	4	1	2	0
SGOL2 WILD-TYPE	31	29	32	26

'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S1939. Gene #197: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SGOL2 MUTATED	2	1	2	2	0
SGOL2 WILD-TYPE	24	19	26	23	20

'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S1940. Gene #197: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SGOL2 MUTATED	3	4	0
SGOL2 WILD-TYPE	45	49	18

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S1941. Gene #197: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SGOL2 MUTATED	3	0	2	1	1
SGOL2 WILD-TYPE	34	31	15	20	12

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S1942. Gene #197: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SGOL2 MUTATED	4	2	1
SGOL2 WILD-TYPE	67	25	20

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1943. Gene #197: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SGOL2 MUTATED	1	0	1	0	4	1	0
SGOL2 WILD-TYPE	17	8	9	8	32	24	12

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S1944. Gene #197: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SGOL2 MUTATED	2	1	0	3	1	0
SGOL2 WILD-TYPE	15	31	13	29	15	7

'MAGEC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1945. Gene #198: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MAGEC1 MUTATED	4	6	7	4
MAGEC1 WILD-TYPE	15	47	23	20

'MAGEC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1946. Gene #198: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MAGEC1 MUTATED	4	5	7	5
MAGEC1 WILD-TYPE	31	25	27	21

'MAGEC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S1947. Gene #198: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MAGEC1 MUTATED	5	4	2	1	3
MAGEC1 WILD-TYPE	24	14	11	8	10

'MAGEC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1948. Gene #198: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MAGEC1 MUTATED	6	4	1	2	2
MAGEC1 WILD-TYPE	26	14	11	8	8

'MAGEC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S1949. Gene #198: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MAGEC1 MUTATED	6	2	3	6	4
MAGEC1 WILD-TYPE	20	18	25	19	16

'MAGEC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S1950. Gene #198: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MAGEC1 MUTATED	8	9	4
MAGEC1 WILD-TYPE	40	44	14

'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S1951. Gene #198: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MAGEC1 MUTATED	5	6	5	3	2
MAGEC1 WILD-TYPE	32	25	12	18	11

'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1952. Gene #198: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MAGEC1 MUTATED	13	6	2
MAGEC1 WILD-TYPE	58	21	19

'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S1953. Gene #198: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MAGEC1 MUTATED	3	0	2	2	7	3	4
MAGEC1 WILD-TYPE	15	8	8	6	29	22	8

'MAGEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S1954. Gene #198: 'MAGEC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MAGEC1 MUTATED	4	5	4	6	1	1
MAGEC1 WILD-TYPE	13	27	9	26	15	6

'ZNF609 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1955. Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF609 MUTATED	0	2	2	0
ZNF609 WILD-TYPE	19	51	28	24

'ZNF609 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S1956. Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF609 MUTATED	2	2	0	0
ZNF609 WILD-TYPE	33	28	34	26

'ZNF609 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S1957. Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF609 MUTATED	0	2	1	1	0
ZNF609 WILD-TYPE	26	18	27	24	20

'ZNF609 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0317 (Fisher's exact test), Q value = 1

Table S1958. Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF609 MUTATED	2	0	2
ZNF609 WILD-TYPE	46	53	16

Figure S93. Get High-res Image Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF609 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S1959. Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF609 MUTATED	1	0	0	2	1
ZNF609 WILD-TYPE	36	31	17	19	12

'ZNF609 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S1960. Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF609 MUTATED	2	1	1
ZNF609 WILD-TYPE	69	26	20

'ZNF609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00609 (Fisher's exact test), Q value = 1

Table S1961. Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF609 MUTATED	0	0	2	0	0	0	2
ZNF609 WILD-TYPE	18	8	8	8	36	25	10

Figure S94. Get High-res Image Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 1

Table S1962. Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF609 MUTATED	1	0	0	1	0	2
ZNF609 WILD-TYPE	16	32	13	31	16	5

Figure S95. Get High-res Image Gene #199: 'ZNF609 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ATP4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S1963. Gene #200: 'ATP4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ATP4A MUTATED	3	4	3	0
ATP4A WILD-TYPE	16	49	27	24

'ATP4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S1964. Gene #200: 'ATP4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ATP4A MUTATED	2	4	4	0
ATP4A WILD-TYPE	33	26	30	26

'ATP4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1965. Gene #200: 'ATP4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ATP4A MUTATED	2	1	0	1	2
ATP4A WILD-TYPE	27	17	13	8	11

'ATP4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1966. Gene #200: 'ATP4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ATP4A MUTATED	3	1	1	0	1
ATP4A WILD-TYPE	29	17	11	10	9

'ATP4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1967. Gene #200: 'ATP4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ATP4A MUTATED	1	1	3	4	1
ATP4A WILD-TYPE	25	19	25	21	19

'ATP4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1968. Gene #200: 'ATP4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ATP4A MUTATED	5	4	1
ATP4A WILD-TYPE	43	49	17

'ATP4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1969. Gene #200: 'ATP4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ATP4A MUTATED	3	2	2	3	0
ATP4A WILD-TYPE	34	29	15	18	13

'ATP4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S1970. Gene #200: 'ATP4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ATP4A MUTATED	6	3	1
ATP4A WILD-TYPE	65	24	20

'ATP4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1971. Gene #200: 'ATP4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ATP4A MUTATED	1	1	2	1	2	1	2
ATP4A WILD-TYPE	17	7	8	7	34	24	10

'ATP4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S1972. Gene #200: 'ATP4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ATP4A MUTATED	1	3	1	4	0	1
ATP4A WILD-TYPE	16	29	12	28	16	6

'TRPV2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1973. Gene #201: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TRPV2 MUTATED	0	3	2	2
TRPV2 WILD-TYPE	19	50	28	22

'TRPV2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S1974. Gene #201: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TRPV2 MUTATED	2	0	4	1
TRPV2 WILD-TYPE	33	30	30	25

'TRPV2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S1975. Gene #201: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TRPV2 MUTATED	2	1	1	1	0
TRPV2 WILD-TYPE	27	17	12	8	13

'TRPV2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S1976. Gene #201: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TRPV2 MUTATED	2	1	0	1	1
TRPV2 WILD-TYPE	30	17	12	9	9

'TRPV2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S1977. Gene #201: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TRPV2 MUTATED	3	0	2	1	1
TRPV2 WILD-TYPE	23	20	26	24	19

'TRPV2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1978. Gene #201: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TRPV2 MUTATED	1	6	0
TRPV2 WILD-TYPE	47	47	18

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S1979. Gene #201: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TRPV2 MUTATED	3	1	0	3	0
TRPV2 WILD-TYPE	34	30	17	18	13

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1980. Gene #201: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TRPV2 MUTATED	7	0	0
TRPV2 WILD-TYPE	64	27	21

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S1981. Gene #201: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TRPV2 MUTATED	0	0	2	0	4	1	0
TRPV2 WILD-TYPE	18	8	8	8	32	24	12

'TRPV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1982. Gene #201: 'TRPV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TRPV2 MUTATED	2	2	1	1	1	0
TRPV2 WILD-TYPE	15	30	12	31	15	7

'N4BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S1983. Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
N4BP2 MUTATED	2	1	1	2
N4BP2 WILD-TYPE	17	52	29	22

'N4BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1984. Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
N4BP2 MUTATED	2	1	2	1
N4BP2 WILD-TYPE	33	29	32	25

'N4BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S1985. Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
N4BP2 MUTATED	3	0	0	1	0
N4BP2 WILD-TYPE	26	18	13	8	13

'N4BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1986. Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
N4BP2 MUTATED	4	0	0	0	0
N4BP2 WILD-TYPE	28	18	12	10	10

'N4BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S1987. Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
N4BP2 MUTATED	3	0	0	2	1
N4BP2 WILD-TYPE	23	20	28	23	19

'N4BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S1988. Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
N4BP2 MUTATED	3	2	1
N4BP2 WILD-TYPE	45	51	17

'N4BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 1

Table S1989. Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
N4BP2 MUTATED	0	0	2	2	2
N4BP2 WILD-TYPE	37	31	15	19	11

Figure S96. Get High-res Image Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'N4BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1990. Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
N4BP2 MUTATED	4	1	1
N4BP2 WILD-TYPE	67	26	20

'N4BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1991. Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
N4BP2 MUTATED	1	0	2	1	1	0	1
N4BP2 WILD-TYPE	17	8	8	7	35	25	11

'N4BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1992. Gene #202: 'N4BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
N4BP2 MUTATED	3	0	0	2	1	0
N4BP2 WILD-TYPE	14	32	13	30	15	7

'HMMR MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1993. Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HMMR MUTATED	1	3	1	1
HMMR WILD-TYPE	18	50	29	23

'HMMR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 1

Table S1994. Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HMMR MUTATED	5	0	1	0
HMMR WILD-TYPE	30	30	33	26

Figure S97. Get High-res Image Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HMMR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1995. Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HMMR MUTATED	1	1	0	1	1
HMMR WILD-TYPE	28	17	13	8	12

'HMMR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1996. Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HMMR MUTATED	1	1	0	1	1
HMMR WILD-TYPE	31	17	12	9	9

'HMMR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S1997. Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HMMR MUTATED	2	0	2	1	1
HMMR WILD-TYPE	24	20	26	24	19

'HMMR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1998. Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HMMR MUTATED	2	4	0
HMMR WILD-TYPE	46	49	18

'HMMR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S1999. Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HMMR MUTATED	2	1	0	3	0
HMMR WILD-TYPE	35	30	17	18	13

'HMMR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S2000. Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HMMR MUTATED	6	0	0
HMMR WILD-TYPE	65	27	21

'HMMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S2001. Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HMMR MUTATED	0	0	1	1	3	1	0
HMMR WILD-TYPE	18	8	9	7	33	24	12

'HMMR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S2002. Gene #203: 'HMMR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HMMR MUTATED	0	3	2	1	0	0
HMMR WILD-TYPE	17	29	11	31	16	7

'CSNK1G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2003. Gene #204: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CSNK1G3 MUTATED	1	2	1	1
CSNK1G3 WILD-TYPE	18	51	29	23

'CSNK1G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S2004. Gene #204: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CSNK1G3 MUTATED	2	2	0	0
CSNK1G3 WILD-TYPE	33	28	34	26

'CSNK1G3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S2005. Gene #204: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CSNK1G3 MUTATED	1	2	1	0	0
CSNK1G3 WILD-TYPE	28	16	12	9	13

'CSNK1G3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S2006. Gene #204: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CSNK1G3 MUTATED	1	2	1	0	0
CSNK1G3 WILD-TYPE	31	16	11	10	10

'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2007. Gene #204: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CSNK1G3 MUTATED	1	1	1	1	0
CSNK1G3 WILD-TYPE	25	19	27	24	20

'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S2008. Gene #204: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CSNK1G3 MUTATED	2	1	1
CSNK1G3 WILD-TYPE	46	52	17

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2009. Gene #204: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CSNK1G3 MUTATED	2	1	0	1	0
CSNK1G3 WILD-TYPE	35	30	17	20	13

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S2010. Gene #204: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CSNK1G3 MUTATED	2	1	1
CSNK1G3 WILD-TYPE	69	26	20

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S2011. Gene #204: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CSNK1G3 MUTATED	0	0	1	1	2	0	0
CSNK1G3 WILD-TYPE	18	8	9	7	34	25	12

'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S2012. Gene #204: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CSNK1G3 MUTATED	1	1	0	1	0	1
CSNK1G3 WILD-TYPE	16	31	13	31	16	6

'ATP13A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S2013. Gene #205: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ATP13A3 MUTATED	0	1	3	1
ATP13A3 WILD-TYPE	19	52	27	23

'ATP13A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S2014. Gene #205: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ATP13A3 MUTATED	0	1	2	2
ATP13A3 WILD-TYPE	35	29	32	24

'ATP13A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S2015. Gene #205: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ATP13A3 MUTATED	2	2	1	0	0
ATP13A3 WILD-TYPE	27	16	12	9	13

'ATP13A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S2016. Gene #205: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ATP13A3 MUTATED	2	2	0	0	1
ATP13A3 WILD-TYPE	30	16	12	10	9

'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S2017. Gene #205: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ATP13A3 MUTATED	0	1	1	1	2
ATP13A3 WILD-TYPE	26	19	27	24	18

'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S2018. Gene #205: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ATP13A3 MUTATED	1	3	1
ATP13A3 WILD-TYPE	47	50	17

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S2019. Gene #205: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ATP13A3 MUTATED	1	3	1	0	0
ATP13A3 WILD-TYPE	36	28	16	21	13

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2020. Gene #205: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ATP13A3 MUTATED	3	1	1
ATP13A3 WILD-TYPE	68	26	20

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S2021. Gene #205: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ATP13A3 MUTATED	1	0	0	0	0	4	0
ATP13A3 WILD-TYPE	17	8	10	8	36	21	12

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S2022. Gene #205: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ATP13A3 MUTATED	0	2	0	1	2	0
ATP13A3 WILD-TYPE	17	30	13	31	14	7

'ZNF626 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2023. Gene #206: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF626 MUTATED	1	5	2	2
ZNF626 WILD-TYPE	18	48	28	22

'ZNF626 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0577 (Fisher's exact test), Q value = 1

Table S2024. Gene #206: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF626 MUTATED	5	4	0	1
ZNF626 WILD-TYPE	30	26	34	25

'ZNF626 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S2025. Gene #206: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF626 MUTATED	2	0	1	2	1
ZNF626 WILD-TYPE	27	18	12	7	12

'ZNF626 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S2026. Gene #206: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF626 MUTATED	4	0	1	1	0
ZNF626 WILD-TYPE	28	18	11	9	10

'ZNF626 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S2027. Gene #206: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF626 MUTATED	1	2	2	5	0
ZNF626 WILD-TYPE	25	18	26	20	20

'ZNF626 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S2028. Gene #206: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF626 MUTATED	5	4	1
ZNF626 WILD-TYPE	43	49	17

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S2029. Gene #206: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF626 MUTATED	1	2	2	3	2
ZNF626 WILD-TYPE	36	29	15	18	11

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0831 (Fisher's exact test), Q value = 1

Table S2030. Gene #206: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF626 MUTATED	3	4	3
ZNF626 WILD-TYPE	68	23	18

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S2031. Gene #206: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF626 MUTATED	1	2	1	0	2	2	2
ZNF626 WILD-TYPE	17	6	9	8	34	23	10

'ZNF626 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0914 (Fisher's exact test), Q value = 1

Table S2032. Gene #206: 'ZNF626 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF626 MUTATED	1	0	1	6	1	1
ZNF626 WILD-TYPE	16	32	12	26	15	6

'LIMD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2033. Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LIMD1 MUTATED	1	4	2	1
LIMD1 WILD-TYPE	18	49	28	23

'LIMD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 1

Table S2034. Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LIMD1 MUTATED	5	0	3	0
LIMD1 WILD-TYPE	30	30	31	26

Figure S98. Get High-res Image Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LIMD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S2035. Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
LIMD1 MUTATED	2	2	0	2	1
LIMD1 WILD-TYPE	27	16	13	7	12

'LIMD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S2036. Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
LIMD1 MUTATED	4	1	0	1	1
LIMD1 WILD-TYPE	28	17	12	9	9

'LIMD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S2037. Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LIMD1 MUTATED	3	0	2	3	0
LIMD1 WILD-TYPE	23	20	26	22	20

'LIMD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S2038. Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LIMD1 MUTATED	4	4	0
LIMD1 WILD-TYPE	44	49	18

'LIMD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S2039. Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LIMD1 MUTATED	4	1	1	2	0
LIMD1 WILD-TYPE	33	30	16	19	13

'LIMD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0859 (Fisher's exact test), Q value = 1

Table S2040. Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LIMD1 MUTATED	8	0	0
LIMD1 WILD-TYPE	63	27	21

'LIMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S2041. Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LIMD1 MUTATED	1	2	1	0	3	1	0
LIMD1 WILD-TYPE	17	6	9	8	33	24	12

'LIMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S2042. Gene #207: 'LIMD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LIMD1 MUTATED	0	5	0	3	0	0
LIMD1 WILD-TYPE	17	27	13	29	16	7

'ESCO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S2043. Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ESCO2 MUTATED	0	1	3	0
ESCO2 WILD-TYPE	19	52	27	24

'ESCO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 1

Table S2044. Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ESCO2 MUTATED	0	1	0	3
ESCO2 WILD-TYPE	35	29	34	23

Figure S99. Get High-res Image Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ESCO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S2045. Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ESCO2 MUTATED	0	1	1	0	1
ESCO2 WILD-TYPE	29	17	12	9	12

'ESCO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S2046. Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ESCO2 MUTATED	0	2	0	0	1
ESCO2 WILD-TYPE	32	16	12	10	9

'ESCO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 1

Table S2047. Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ESCO2 MUTATED	0	2	0	0	2
ESCO2 WILD-TYPE	26	18	28	25	18

Figure S100. Get High-res Image Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ESCO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S2048. Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ESCO2 MUTATED	0	3	1
ESCO2 WILD-TYPE	48	50	17

'ESCO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 1

Table S2049. Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ESCO2 MUTATED	0	2	0	0	2
ESCO2 WILD-TYPE	37	29	17	21	11

Figure S101. Get High-res Image Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ESCO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S2050. Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ESCO2 MUTATED	3	0	1
ESCO2 WILD-TYPE	68	27	20

'ESCO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 1

Table S2051. Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ESCO2 MUTATED	0	1	0	2	0	1	0
ESCO2 WILD-TYPE	18	7	10	6	36	24	12

Figure S102. Get High-res Image Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ESCO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0519 (Fisher's exact test), Q value = 1

Table S2052. Gene #208: 'ESCO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ESCO2 MUTATED	1	0	2	0	1	0
ESCO2 WILD-TYPE	16	32	11	32	15	7

'MRPS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S2053. Gene #209: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MRPS5 MUTATED	1	1	1	1
MRPS5 WILD-TYPE	18	52	29	23

'MRPS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S2054. Gene #209: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MRPS5 MUTATED	1	0	2	1
MRPS5 WILD-TYPE	34	30	32	25

'MRPS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S2055. Gene #209: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MRPS5 MUTATED	1	1	0	1	0
MRPS5 WILD-TYPE	28	17	13	8	13

'MRPS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2056. Gene #209: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MRPS5 MUTATED	2	1	0	0	0
MRPS5 WILD-TYPE	30	17	12	10	10

'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S2057. Gene #209: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MRPS5 MUTATED	0	1	2	1	0
MRPS5 WILD-TYPE	26	19	26	24	20

'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2058. Gene #209: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MRPS5 MUTATED	1	2	1
MRPS5 WILD-TYPE	47	51	17

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S2059. Gene #209: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MRPS5 MUTATED	0	2	0	1	1
MRPS5 WILD-TYPE	37	29	17	20	12

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S2060. Gene #209: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MRPS5 MUTATED	3	0	1
MRPS5 WILD-TYPE	68	27	20

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S2061. Gene #209: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MRPS5 MUTATED	0	1	1	0	0	2	0
MRPS5 WILD-TYPE	18	7	9	8	36	23	12

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S2062. Gene #209: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MRPS5 MUTATED	0	2	0	1	1	0
MRPS5 WILD-TYPE	17	30	13	31	15	7

'TFIP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S2063. Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TFIP11 MUTATED	1	2	3	0
TFIP11 WILD-TYPE	18	51	27	24

'TFIP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S2064. Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TFIP11 MUTATED	3	2	0	1
TFIP11 WILD-TYPE	32	28	34	25

'TFIP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 1

Table S2065. Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TFIP11 MUTATED	0	1	3	2	0
TFIP11 WILD-TYPE	29	17	10	7	13

Figure S103. Get High-res Image Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TFIP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S2066. Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TFIP11 MUTATED	1	1	2	1	1
TFIP11 WILD-TYPE	31	17	10	9	9

'TFIP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S2067. Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TFIP11 MUTATED	1	0	1	2	1
TFIP11 WILD-TYPE	25	20	27	23	19

'TFIP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S2068. Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TFIP11 MUTATED	4	1	0
TFIP11 WILD-TYPE	44	52	18

'TFIP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S2069. Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TFIP11 MUTATED	1	1	1	2	0
TFIP11 WILD-TYPE	36	30	16	19	13

'TFIP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S2070. Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TFIP11 MUTATED	3	2	0
TFIP11 WILD-TYPE	68	25	21

'TFIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 1

Table S2071. Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TFIP11 MUTATED	2	0	2	0	0	1	0
TFIP11 WILD-TYPE	16	8	8	8	36	24	12

'TFIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S2072. Gene #210: 'TFIP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TFIP11 MUTATED	1	0	0	3	1	0
TFIP11 WILD-TYPE	16	32	13	29	15	7

'PVRL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S2073. Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PVRL1 MUTATED	0	5	2	1
PVRL1 WILD-TYPE	19	48	28	23

'PVRL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S2074. Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PVRL1 MUTATED	4	2	1	1
PVRL1 WILD-TYPE	31	28	33	25

'PVRL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S2075. Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PVRL1 MUTATED	1	2	1	2	0
PVRL1 WILD-TYPE	28	16	12	7	13

'PVRL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S2076. Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PVRL1 MUTATED	2	2	1	1	0
PVRL1 WILD-TYPE	30	16	11	9	10

'PVRL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S2077. Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PVRL1 MUTATED	1	2	3	2	0
PVRL1 WILD-TYPE	25	18	25	23	20

'PVRL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2078. Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PVRL1 MUTATED	3	4	1
PVRL1 WILD-TYPE	45	49	17

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S2079. Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PVRL1 MUTATED	2	2	2	2	0
PVRL1 WILD-TYPE	35	29	15	19	13

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2080. Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PVRL1 MUTATED	5	2	1
PVRL1 WILD-TYPE	66	25	20

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 1

Table S2081. Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PVRL1 MUTATED	2	2	2	0	1	0	1
PVRL1 WILD-TYPE	16	6	8	8	35	25	11

Figure S104. Get High-res Image Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S2082. Gene #211: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PVRL1 MUTATED	0	3	1	3	0	1
PVRL1 WILD-TYPE	17	29	12	29	16	6

'DIAPH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 1

Table S2083. Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DIAPH3 MUTATED	0	1	5	1
DIAPH3 WILD-TYPE	19	52	25	23

Figure S105. Get High-res Image Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DIAPH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S2084. Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DIAPH3 MUTATED	4	1	0	2
DIAPH3 WILD-TYPE	31	29	34	24

'DIAPH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S2085. Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DIAPH3 MUTATED	0	1	0	1	2
DIAPH3 WILD-TYPE	29	17	13	8	11

'DIAPH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S2086. Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DIAPH3 MUTATED	3	0	1	0	0
DIAPH3 WILD-TYPE	29	18	11	10	10

'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S2087. Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DIAPH3 MUTATED	2	0	1	2	2
DIAPH3 WILD-TYPE	24	20	27	23	18

'DIAPH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S2088. Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DIAPH3 MUTATED	2	4	1
DIAPH3 WILD-TYPE	46	49	17

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S2089. Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DIAPH3 MUTATED	2	2	1	2	0
DIAPH3 WILD-TYPE	35	29	16	19	13

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S2090. Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DIAPH3 MUTATED	6	1	0
DIAPH3 WILD-TYPE	65	26	21

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S2091. Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DIAPH3 MUTATED	0	1	1	1	2	0	1
DIAPH3 WILD-TYPE	18	7	9	7	34	25	11

'DIAPH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S2092. Gene #212: 'DIAPH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DIAPH3 MUTATED	1	2	1	2	0	0
DIAPH3 WILD-TYPE	16	30	12	30	16	7

'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S2093. Gene #213: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IRS4 MUTATED	3	2	2	1
IRS4 WILD-TYPE	16	51	28	23

'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S2094. Gene #213: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IRS4 MUTATED	3	1	3	1
IRS4 WILD-TYPE	32	29	31	25

'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S2095. Gene #213: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
IRS4 MUTATED	2	0	1	2	0
IRS4 WILD-TYPE	27	18	12	7	13

'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S2096. Gene #213: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
IRS4 MUTATED	3	0	1	1	0
IRS4 WILD-TYPE	29	18	11	9	10

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S2097. Gene #213: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IRS4 MUTATED	2	0	3	2	1
IRS4 WILD-TYPE	24	20	25	23	19

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2098. Gene #213: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IRS4 MUTATED	3	4	1
IRS4 WILD-TYPE	45	49	17

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S2099. Gene #213: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IRS4 MUTATED	1	2	1	3	1
IRS4 WILD-TYPE	36	29	16	18	12

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2100. Gene #213: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IRS4 MUTATED	5	2	1
IRS4 WILD-TYPE	66	25	20

'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 1

Table S2101. Gene #213: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IRS4 MUTATED	1	2	1	1	1	0	1
IRS4 WILD-TYPE	17	6	9	7	35	25	11

'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S2102. Gene #213: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IRS4 MUTATED	1	2	0	3	1	0
IRS4 WILD-TYPE	16	30	13	29	15	7

'USP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2103. Gene #214: 'USP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
USP4 MUTATED	1	3	2	1
USP4 WILD-TYPE	18	50	28	23

'USP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S2104. Gene #214: 'USP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
USP4 MUTATED	3	1	2	1
USP4 WILD-TYPE	32	29	32	25

'USP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S2105. Gene #214: 'USP4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
USP4 MUTATED	1	0	0	1	1
USP4 WILD-TYPE	28	18	13	8	12

'USP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S2106. Gene #214: 'USP4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
USP4 MUTATED	2	0	1	0	0
USP4 WILD-TYPE	30	18	11	10	10

'USP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S2107. Gene #214: 'USP4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
USP4 MUTATED	3	1	0	2	1
USP4 WILD-TYPE	23	19	28	23	19

'USP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2108. Gene #214: 'USP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
USP4 MUTATED	3	3	1
USP4 WILD-TYPE	45	50	17

'USP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S2109. Gene #214: 'USP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
USP4 MUTATED	3	1	0	3	0
USP4 WILD-TYPE	34	30	17	18	13

'USP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2110. Gene #214: 'USP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
USP4 MUTATED	5	1	1
USP4 WILD-TYPE	66	26	20

'USP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S2111. Gene #214: 'USP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
USP4 MUTATED	1	0	2	1	2	1	0
USP4 WILD-TYPE	17	8	8	7	34	24	12

'USP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S2112. Gene #214: 'USP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
USP4 MUTATED	1	1	1	3	0	1
USP4 WILD-TYPE	16	31	12	29	16	6

'TGFBR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S2113. Gene #215: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TGFBR2 MUTATED	3	3	2	0
TGFBR2 WILD-TYPE	16	50	28	24

'TGFBR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 1

Table S2114. Gene #215: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TGFBR2 MUTATED	5	0	1	2
TGFBR2 WILD-TYPE	30	30	33	24

'TGFBR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S2115. Gene #215: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TGFBR2 MUTATED	1	2	0	1	2
TGFBR2 WILD-TYPE	28	16	13	8	11

'TGFBR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S2116. Gene #215: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TGFBR2 MUTATED	3	3	0	0	0
TGFBR2 WILD-TYPE	29	15	12	10	10

'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S2117. Gene #215: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TGFBR2 MUTATED	3	1	1	1	2
TGFBR2 WILD-TYPE	23	19	27	24	18

'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2118. Gene #215: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TGFBR2 MUTATED	3	4	1
TGFBR2 WILD-TYPE	45	49	17

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S2119. Gene #215: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TGFBR2 MUTATED	3	2	0	2	1
TGFBR2 WILD-TYPE	34	29	17	19	12

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S2120. Gene #215: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TGFBR2 MUTATED	7	0	1
TGFBR2 WILD-TYPE	64	27	20

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.951 (Fisher's exact test), Q value = 1

Table S2121. Gene #215: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TGFBR2 MUTATED	1	0	1	1	2	2	1
TGFBR2 WILD-TYPE	17	8	9	7	34	23	11

'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S2122. Gene #215: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TGFBR2 MUTATED	3	2	1	1	1	0
TGFBR2 WILD-TYPE	14	30	12	31	15	7

'ZMYND8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S2123. Gene #216: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZMYND8 MUTATED	1	2	2	3
ZMYND8 WILD-TYPE	18	51	28	21

'ZMYND8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S2124. Gene #216: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZMYND8 MUTATED	5	1	2	0
ZMYND8 WILD-TYPE	30	29	32	26

'ZMYND8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S2125. Gene #216: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZMYND8 MUTATED	2	1	0	1	1
ZMYND8 WILD-TYPE	27	17	13	8	12

'ZMYND8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S2126. Gene #216: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZMYND8 MUTATED	2	2	0	1	0
ZMYND8 WILD-TYPE	30	16	12	9	10

'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S2127. Gene #216: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZMYND8 MUTATED	4	0	1	2	1
ZMYND8 WILD-TYPE	22	20	27	23	19

'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S2128. Gene #216: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZMYND8 MUTATED	3	5	0
ZMYND8 WILD-TYPE	45	48	18

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S2129. Gene #216: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZMYND8 MUTATED	2	2	1	3	0
ZMYND8 WILD-TYPE	35	29	16	18	13

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S2130. Gene #216: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZMYND8 MUTATED	6	2	0
ZMYND8 WILD-TYPE	65	25	21

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0992 (Fisher's exact test), Q value = 1

Table S2131. Gene #216: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZMYND8 MUTATED	1	0	2	2	3	0	0
ZMYND8 WILD-TYPE	17	8	8	6	33	25	12

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S2132. Gene #216: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZMYND8 MUTATED	2	1	2	3	0	0
ZMYND8 WILD-TYPE	15	31	11	29	16	7

'ATG2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S2133. Gene #217: 'ATG2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ATG2B MUTATED	1	5	3	0
ATG2B WILD-TYPE	18	48	27	24

'ATG2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S2134. Gene #217: 'ATG2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ATG2B MUTATED	1	5	1	2
ATG2B WILD-TYPE	34	25	33	24

'ATG2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 1

Table S2135. Gene #217: 'ATG2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ATG2B MUTATED	1	0	2	2	0
ATG2B WILD-TYPE	28	18	11	7	13

'ATG2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S2136. Gene #217: 'ATG2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ATG2B MUTATED	2	0	2	1	0
ATG2B WILD-TYPE	30	18	10	9	10

'ATG2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S2137. Gene #217: 'ATG2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ATG2B MUTATED	0	3	1	2	1
ATG2B WILD-TYPE	26	17	27	23	19

'ATG2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S2138. Gene #217: 'ATG2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ATG2B MUTATED	5	1	1
ATG2B WILD-TYPE	43	52	17

'ATG2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S2139. Gene #217: 'ATG2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ATG2B MUTATED	2	1	1	1	2
ATG2B WILD-TYPE	35	30	16	20	11

'ATG2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S2140. Gene #217: 'ATG2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ATG2B MUTATED	4	3	0
ATG2B WILD-TYPE	67	24	21

'ATG2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S2141. Gene #217: 'ATG2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ATG2B MUTATED	2	1	1	0	1	1	1
ATG2B WILD-TYPE	16	7	9	8	35	24	11

'ATG2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S2142. Gene #217: 'ATG2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ATG2B MUTATED	2	0	0	3	1	1
ATG2B WILD-TYPE	15	32	13	29	15	6

'CDH10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S2143. Gene #218: 'CDH10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CDH10 MUTATED	3	4	5	1
CDH10 WILD-TYPE	16	49	25	23

'CDH10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S2144. Gene #218: 'CDH10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CDH10 MUTATED	2	3	6	2
CDH10 WILD-TYPE	33	27	28	24

'CDH10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S2145. Gene #218: 'CDH10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CDH10 MUTATED	2	2	0	1	1
CDH10 WILD-TYPE	27	16	13	8	12

'CDH10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S2146. Gene #218: 'CDH10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CDH10 MUTATED	2	2	0	1	1
CDH10 WILD-TYPE	30	16	12	9	9

'CDH10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S2147. Gene #218: 'CDH10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CDH10 MUTATED	3	1	3	3	2
CDH10 WILD-TYPE	23	19	25	22	18

'CDH10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S2148. Gene #218: 'CDH10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CDH10 MUTATED	4	7	1
CDH10 WILD-TYPE	44	46	17

'CDH10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S2149. Gene #218: 'CDH10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CDH10 MUTATED	3	3	1	4	1
CDH10 WILD-TYPE	34	28	16	17	12

'CDH10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S2150. Gene #218: 'CDH10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CDH10 MUTATED	8	4	0
CDH10 WILD-TYPE	63	23	21

'CDH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S2151. Gene #218: 'CDH10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CDH10 MUTATED	1	1	1	1	3	2	1
CDH10 WILD-TYPE	17	7	9	7	33	23	11

'CDH10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S2152. Gene #218: 'CDH10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CDH10 MUTATED	1	3	2	2	1	1
CDH10 WILD-TYPE	16	29	11	30	15	6

'OXR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S2153. Gene #219: 'OXR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OXR1 MUTATED	0	3	1	1
OXR1 WILD-TYPE	19	50	29	23

'OXR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S2154. Gene #219: 'OXR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OXR1 MUTATED	0	1	3	1
OXR1 WILD-TYPE	35	29	31	25

'OXR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S2155. Gene #219: 'OXR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OXR1 MUTATED	1	1	0	0	1
OXR1 WILD-TYPE	28	17	13	9	12

'OXR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S2156. Gene #219: 'OXR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OXR1 MUTATED	1	1	0	0	1
OXR1 WILD-TYPE	31	17	12	10	9

'OXR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S2157. Gene #219: 'OXR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OXR1 MUTATED	1	1	2	0	1
OXR1 WILD-TYPE	25	19	26	25	19

'OXR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2158. Gene #219: 'OXR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OXR1 MUTATED	2	2	1
OXR1 WILD-TYPE	46	51	17

'OXR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S2159. Gene #219: 'OXR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OXR1 MUTATED	1	2	0	2	0
OXR1 WILD-TYPE	36	29	17	19	13

'OXR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S2160. Gene #219: 'OXR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OXR1 MUTATED	4	0	1
OXR1 WILD-TYPE	67	27	20

'OXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S2161. Gene #219: 'OXR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OXR1 MUTATED	0	0	0	0	2	2	1
OXR1 WILD-TYPE	18	8	10	8	34	23	11

'OXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S2162. Gene #219: 'OXR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OXR1 MUTATED	1	2	1	0	0	1
OXR1 WILD-TYPE	16	30	12	32	16	6

'SEC31A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2163. Gene #220: 'SEC31A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SEC31A MUTATED	1	3	1	1
SEC31A WILD-TYPE	18	50	29	23

'SEC31A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S2164. Gene #220: 'SEC31A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SEC31A MUTATED	4	0	1	1
SEC31A WILD-TYPE	31	30	33	25

'SEC31A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S2165. Gene #220: 'SEC31A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SEC31A MUTATED	2	2	0	1	0
SEC31A WILD-TYPE	27	16	13	8	13

'SEC31A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S2166. Gene #220: 'SEC31A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SEC31A MUTATED	3	2	0	0	0
SEC31A WILD-TYPE	29	16	12	10	10

'SEC31A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S2167. Gene #220: 'SEC31A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SEC31A MUTATED	3	1	0	1	1
SEC31A WILD-TYPE	23	19	28	24	19

'SEC31A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S2168. Gene #220: 'SEC31A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SEC31A MUTATED	1	5	0
SEC31A WILD-TYPE	47	48	18

'SEC31A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S2169. Gene #220: 'SEC31A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SEC31A MUTATED	4	1	0	1	0
SEC31A WILD-TYPE	33	30	17	20	13

'SEC31A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S2170. Gene #220: 'SEC31A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SEC31A MUTATED	6	0	0
SEC31A WILD-TYPE	65	27	21

'SEC31A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S2171. Gene #220: 'SEC31A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SEC31A MUTATED	0	0	1	1	2	2	0
SEC31A WILD-TYPE	18	8	9	7	34	23	12

'SEC31A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S2172. Gene #220: 'SEC31A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SEC31A MUTATED	1	3	1	1	0	0
SEC31A WILD-TYPE	16	29	12	31	16	7

'NDEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S2173. Gene #221: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NDEL1 MUTATED	1	1	2	1
NDEL1 WILD-TYPE	18	52	28	23

'NDEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S2174. Gene #221: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NDEL1 MUTATED	0	1	1	3
NDEL1 WILD-TYPE	35	29	33	23

'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0835 (Fisher's exact test), Q value = 1

Table S2175. Gene #221: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NDEL1 MUTATED	0	1	1	0	3
NDEL1 WILD-TYPE	26	19	27	25	17

'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S2176. Gene #221: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NDEL1 MUTATED	1	2	2
NDEL1 WILD-TYPE	47	51	16

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S2177. Gene #221: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NDEL1 MUTATED	0	3	0	1	1
NDEL1 WILD-TYPE	37	28	17	20	12

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 1

Table S2178. Gene #221: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NDEL1 MUTATED	2	0	3
NDEL1 WILD-TYPE	69	27	18

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S2179. Gene #221: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NDEL1 MUTATED	0	1	0	1	0	2	1
NDEL1 WILD-TYPE	18	7	10	7	36	23	11

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00879 (Fisher's exact test), Q value = 1

Table S2180. Gene #221: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NDEL1 MUTATED	1	0	0	0	3	1
NDEL1 WILD-TYPE	16	32	13	32	13	6

Figure S106. Get High-res Image Gene #221: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SHROOM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S2181. Gene #222: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SHROOM4 MUTATED	0	4	4	2
SHROOM4 WILD-TYPE	19	49	26	22

'SHROOM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S2182. Gene #222: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SHROOM4 MUTATED	3	1	3	3
SHROOM4 WILD-TYPE	32	29	31	23

'SHROOM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S2183. Gene #222: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SHROOM4 MUTATED	2	1	2	1	1
SHROOM4 WILD-TYPE	27	17	11	8	12

'SHROOM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S2184. Gene #222: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SHROOM4 MUTATED	3	1	1	0	2
SHROOM4 WILD-TYPE	29	17	11	10	8

'SHROOM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S2185. Gene #222: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SHROOM4 MUTATED	2	1	2	2	3
SHROOM4 WILD-TYPE	24	19	26	23	17

'SHROOM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S2186. Gene #222: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SHROOM4 MUTATED	3	4	3
SHROOM4 WILD-TYPE	45	49	15

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S2187. Gene #222: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SHROOM4 MUTATED	3	4	1	1	1
SHROOM4 WILD-TYPE	34	27	16	20	12

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S2188. Gene #222: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SHROOM4 MUTATED	6	1	3
SHROOM4 WILD-TYPE	65	26	18

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S2189. Gene #222: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SHROOM4 MUTATED	1	0	1	0	3	5	0
SHROOM4 WILD-TYPE	17	8	9	8	33	20	12

'SHROOM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S2190. Gene #222: 'SHROOM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SHROOM4 MUTATED	1	2	1	3	3	0
SHROOM4 WILD-TYPE	16	30	12	29	13	7

'HIRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 1

Table S2191. Gene #223: 'HIRA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HIRA MUTATED	1	0	2	2
HIRA WILD-TYPE	18	53	28	22

'HIRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S2192. Gene #223: 'HIRA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HIRA MUTATED	1	0	2	2
HIRA WILD-TYPE	34	30	32	24

'HIRA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2193. Gene #223: 'HIRA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HIRA MUTATED	2	1	0	0	1
HIRA WILD-TYPE	27	17	13	9	12

'HIRA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S2194. Gene #223: 'HIRA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HIRA MUTATED	3	0	0	0	1
HIRA WILD-TYPE	29	18	12	10	9

'HIRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S2195. Gene #223: 'HIRA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HIRA MUTATED	2	1	1	0	1
HIRA WILD-TYPE	24	19	27	25	19

'HIRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S2196. Gene #223: 'HIRA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HIRA MUTATED	1	2	2
HIRA WILD-TYPE	47	51	16

'HIRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S2197. Gene #223: 'HIRA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HIRA MUTATED	2	1	1	0	1
HIRA WILD-TYPE	35	30	16	21	12

'HIRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S2198. Gene #223: 'HIRA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HIRA MUTATED	3	0	2
HIRA WILD-TYPE	68	27	19

'HIRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S2199. Gene #223: 'HIRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HIRA MUTATED	0	1	0	0	2	1	1
HIRA WILD-TYPE	18	7	10	8	34	24	11

'HIRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S2200. Gene #223: 'HIRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HIRA MUTATED	2	2	0	0	1	0
HIRA WILD-TYPE	15	30	13	32	15	7

'XRCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S2201. Gene #224: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
XRCC2 MUTATED	2	2	0	0
XRCC2 WILD-TYPE	17	51	30	24

'XRCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S2202. Gene #224: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
XRCC2 MUTATED	1	1	2	0
XRCC2 WILD-TYPE	34	29	32	26

'XRCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S2203. Gene #224: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
XRCC2 MUTATED	0	0	2	2	0
XRCC2 WILD-TYPE	26	20	26	23	20

'XRCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2204. Gene #224: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
XRCC2 MUTATED	2	2	0
XRCC2 WILD-TYPE	46	51	18

'XRCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S2205. Gene #224: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
XRCC2 MUTATED	2	0	2	0	0
XRCC2 WILD-TYPE	35	31	15	21	13

'XRCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S2206. Gene #224: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
XRCC2 MUTATED	2	2	0
XRCC2 WILD-TYPE	69	25	21

'XRCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S2207. Gene #224: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
XRCC2 MUTATED	1	1	0	0	1	0	1
XRCC2 WILD-TYPE	17	7	10	8	35	25	11

'XRCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S2208. Gene #224: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
XRCC2 MUTATED	1	1	0	2	0	0
XRCC2 WILD-TYPE	16	31	13	30	16	7

'APEX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S2209. Gene #225: 'APEX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
APEX1 MUTATED	1	2	1	0
APEX1 WILD-TYPE	18	51	29	24

'APEX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S2210. Gene #225: 'APEX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
APEX1 MUTATED	1	1	2	0
APEX1 WILD-TYPE	34	29	32	26

'APEX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S2211. Gene #225: 'APEX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
APEX1 MUTATED	0	1	2	1	0
APEX1 WILD-TYPE	26	19	26	24	20

'APEX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S2212. Gene #225: 'APEX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
APEX1 MUTATED	2	1	1
APEX1 WILD-TYPE	46	52	17

'APEX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S2213. Gene #225: 'APEX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
APEX1 MUTATED	2	1	0	0	1
APEX1 WILD-TYPE	35	30	17	21	12

'APEX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2214. Gene #225: 'APEX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
APEX1 MUTATED	3	1	0
APEX1 WILD-TYPE	68	26	21

'APEX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S2215. Gene #225: 'APEX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
APEX1 MUTATED	0	0	0	0	1	2	1
APEX1 WILD-TYPE	18	8	10	8	35	23	11

'APEX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S2216. Gene #225: 'APEX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
APEX1 MUTATED	0	2	0	1	0	1
APEX1 WILD-TYPE	17	30	13	31	16	6

'TMEM90B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S2217. Gene #226: 'TMEM90B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TMEM90B MUTATED	1	1	2	2
TMEM90B WILD-TYPE	18	52	28	22

'TMEM90B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S2218. Gene #226: 'TMEM90B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TMEM90B MUTATED	3	1	1	1
TMEM90B WILD-TYPE	32	29	33	25

'TMEM90B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S2219. Gene #226: 'TMEM90B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TMEM90B MUTATED	2	1	0	1	1
TMEM90B WILD-TYPE	27	17	13	8	12

'TMEM90B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S2220. Gene #226: 'TMEM90B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TMEM90B MUTATED	3	2	0	0	0
TMEM90B WILD-TYPE	29	16	12	10	10

'TMEM90B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2221. Gene #226: 'TMEM90B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TMEM90B MUTATED	1	1	2	1	1
TMEM90B WILD-TYPE	25	19	26	24	19

'TMEM90B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S2222. Gene #226: 'TMEM90B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TMEM90B MUTATED	1	4	1
TMEM90B WILD-TYPE	47	49	17

'TMEM90B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S2223. Gene #226: 'TMEM90B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TMEM90B MUTATED	3	1	0	2	0
TMEM90B WILD-TYPE	34	30	17	19	13

'TMEM90B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S2224. Gene #226: 'TMEM90B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TMEM90B MUTATED	5	0	1
TMEM90B WILD-TYPE	66	27	20

'TMEM90B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S2225. Gene #226: 'TMEM90B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TMEM90B MUTATED	0	0	1	1	3	0	1
TMEM90B WILD-TYPE	18	8	9	7	33	25	11

'TMEM90B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S2226. Gene #226: 'TMEM90B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TMEM90B MUTATED	1	2	1	1	0	1
TMEM90B WILD-TYPE	16	30	12	31	16	6

'RAB11FIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S2227. Gene #227: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RAB11FIP1 MUTATED	3	2	2	0
RAB11FIP1 WILD-TYPE	16	51	28	24

'RAB11FIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S2228. Gene #227: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RAB11FIP1 MUTATED	2	1	3	1
RAB11FIP1 WILD-TYPE	33	29	31	25

'RAB11FIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S2229. Gene #227: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RAB11FIP1 MUTATED	2	0	0	1	2
RAB11FIP1 WILD-TYPE	27	18	13	8	11

'RAB11FIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2230. Gene #227: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RAB11FIP1 MUTATED	3	1	1	0	0
RAB11FIP1 WILD-TYPE	29	17	11	10	10

'RAB11FIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S2231. Gene #227: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RAB11FIP1 MUTATED	3	0	1	2	1
RAB11FIP1 WILD-TYPE	23	20	27	23	19

'RAB11FIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S2232. Gene #227: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RAB11FIP1 MUTATED	3	4	0
RAB11FIP1 WILD-TYPE	45	49	18

'RAB11FIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S2233. Gene #227: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RAB11FIP1 MUTATED	3	1	1	2	0
RAB11FIP1 WILD-TYPE	34	30	16	19	13

'RAB11FIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S2234. Gene #227: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RAB11FIP1 MUTATED	6	1	0
RAB11FIP1 WILD-TYPE	65	26	21

'RAB11FIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S2235. Gene #227: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RAB11FIP1 MUTATED	0	0	1	1	4	0	1
RAB11FIP1 WILD-TYPE	18	8	9	7	32	25	11

'RAB11FIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S2236. Gene #227: 'RAB11FIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RAB11FIP1 MUTATED	2	2	1	2	0	0
RAB11FIP1 WILD-TYPE	15	30	12	30	16	7

'MPP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 1

Table S2237. Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MPP6 MUTATED	1	0	3	1
MPP6 WILD-TYPE	18	53	27	23

'MPP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2238. Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MPP6 MUTATED	2	1	1	1
MPP6 WILD-TYPE	33	29	33	25

'MPP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 1

Table S2239. Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MPP6 MUTATED	0	0	0	1	2
MPP6 WILD-TYPE	29	18	13	8	11

Figure S107. Get High-res Image Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MPP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S2240. Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MPP6 MUTATED	1	0	1	0	1
MPP6 WILD-TYPE	31	18	11	10	9

'MPP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 1

Table S2241. Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MPP6 MUTATED	0	0	0	3	1
MPP6 WILD-TYPE	26	20	28	22	19

'MPP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 1

Table S2242. Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MPP6 MUTATED	4	0	0
MPP6 WILD-TYPE	44	53	18

'MPP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S2243. Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MPP6 MUTATED	1	2	0	1	0
MPP6 WILD-TYPE	36	29	17	20	13

'MPP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S2244. Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MPP6 MUTATED	2	2	0
MPP6 WILD-TYPE	69	25	21

'MPP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S2245. Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MPP6 MUTATED	0	0	1	0	0	3	0
MPP6 WILD-TYPE	18	8	9	8	36	22	12

'MPP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S2246. Gene #228: 'MPP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MPP6 MUTATED	0	0	0	3	1	0
MPP6 WILD-TYPE	17	32	13	29	15	7

'KIAA2018 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2247. Gene #229: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KIAA2018 MUTATED	1	4	2	1
KIAA2018 WILD-TYPE	18	49	28	23

'KIAA2018 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S2248. Gene #229: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KIAA2018 MUTATED	3	1	2	2
KIAA2018 WILD-TYPE	32	29	32	24

'KIAA2018 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S2249. Gene #229: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KIAA2018 MUTATED	1	2	1	1	0
KIAA2018 WILD-TYPE	28	16	12	8	13

'KIAA2018 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S2250. Gene #229: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KIAA2018 MUTATED	2	2	1	0	0
KIAA2018 WILD-TYPE	30	16	11	10	10

'KIAA2018 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S2251. Gene #229: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KIAA2018 MUTATED	3	0	1	3	1
KIAA2018 WILD-TYPE	23	20	27	22	19

'KIAA2018 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S2252. Gene #229: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KIAA2018 MUTATED	4	3	1
KIAA2018 WILD-TYPE	44	50	17

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S2253. Gene #229: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KIAA2018 MUTATED	3	2	2	1	0
KIAA2018 WILD-TYPE	34	29	15	20	13

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2254. Gene #229: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KIAA2018 MUTATED	5	2	1
KIAA2018 WILD-TYPE	66	25	20

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S2255. Gene #229: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KIAA2018 MUTATED	1	0	2	0	3	2	0
KIAA2018 WILD-TYPE	17	8	8	8	33	23	12

'KIAA2018 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S2256. Gene #229: 'KIAA2018 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KIAA2018 MUTATED	1	3	0	3	1	0
KIAA2018 WILD-TYPE	16	29	13	29	15	7

'CEP72 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S2257. Gene #230: 'CEP72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CEP72 MUTATED	0	4	1	1
CEP72 WILD-TYPE	19	49	29	23

'CEP72 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S2258. Gene #230: 'CEP72 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CEP72 MUTATED	3	0	2	1
CEP72 WILD-TYPE	32	30	32	25

'CEP72 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S2259. Gene #230: 'CEP72 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CEP72 MUTATED	2	2	0	1	0
CEP72 WILD-TYPE	27	16	13	8	13

'CEP72 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S2260. Gene #230: 'CEP72 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CEP72 MUTATED	3	2	0	0	0
CEP72 WILD-TYPE	29	16	12	10	10

'CEP72 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S2261. Gene #230: 'CEP72 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CEP72 MUTATED	3	0	1	2	0
CEP72 WILD-TYPE	23	20	27	23	20

'CEP72 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S2262. Gene #230: 'CEP72 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CEP72 MUTATED	4	2	0
CEP72 WILD-TYPE	44	51	18

'CEP72 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S2263. Gene #230: 'CEP72 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CEP72 MUTATED	2	1	2	1	0
CEP72 WILD-TYPE	35	30	15	20	13

'CEP72 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S2264. Gene #230: 'CEP72 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CEP72 MUTATED	5	1	0
CEP72 WILD-TYPE	66	26	21

'CEP72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S2265. Gene #230: 'CEP72 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CEP72 MUTATED	1	0	2	0	2	1	0
CEP72 WILD-TYPE	17	8	8	8	34	24	12

'CEP72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S2266. Gene #230: 'CEP72 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CEP72 MUTATED	1	3	0	2	0	0
CEP72 WILD-TYPE	16	29	13	30	16	7

'AJAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S2267. Gene #231: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AJAP1 MUTATED	2	2	1	3
AJAP1 WILD-TYPE	17	51	29	21

'AJAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S2268. Gene #231: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AJAP1 MUTATED	3	1	3	1
AJAP1 WILD-TYPE	32	29	31	25

'AJAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S2269. Gene #231: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AJAP1 MUTATED	1	0	1	2	1
AJAP1 WILD-TYPE	28	18	12	7	12

'AJAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S2270. Gene #231: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AJAP1 MUTATED	4	0	0	0	1
AJAP1 WILD-TYPE	28	18	12	10	9

'AJAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2271. Gene #231: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AJAP1 MUTATED	1	1	3	1	2
AJAP1 WILD-TYPE	25	19	25	24	18

'AJAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S2272. Gene #231: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AJAP1 MUTATED	4	4	0
AJAP1 WILD-TYPE	44	49	18

'AJAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S2273. Gene #231: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AJAP1 MUTATED	2	3	0	1	2
AJAP1 WILD-TYPE	35	28	17	20	11

'AJAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S2274. Gene #231: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AJAP1 MUTATED	6	1	1
AJAP1 WILD-TYPE	65	26	20

'AJAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S2275. Gene #231: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AJAP1 MUTATED	1	0	1	2	2	1	1
AJAP1 WILD-TYPE	17	8	9	6	34	24	11

'AJAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S2276. Gene #231: 'AJAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AJAP1 MUTATED	1	2	2	3	0	0
AJAP1 WILD-TYPE	16	30	11	29	16	7

'GABBR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S2277. Gene #232: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GABBR1 MUTATED	1	4	5	0
GABBR1 WILD-TYPE	18	49	25	24

'GABBR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S2278. Gene #232: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GABBR1 MUTATED	3	3	2	2
GABBR1 WILD-TYPE	32	27	32	24

'GABBR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2279. Gene #232: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GABBR1 MUTATED	3	1	1	1	1
GABBR1 WILD-TYPE	26	17	12	8	12

'GABBR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S2280. Gene #232: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GABBR1 MUTATED	3	2	1	1	0
GABBR1 WILD-TYPE	29	16	11	9	10

'GABBR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S2281. Gene #232: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GABBR1 MUTATED	3	2	1	2	2
GABBR1 WILD-TYPE	23	18	27	23	18

'GABBR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S2282. Gene #232: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GABBR1 MUTATED	4	4	2
GABBR1 WILD-TYPE	44	49	16

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S2283. Gene #232: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GABBR1 MUTATED	3	3	0	3	1
GABBR1 WILD-TYPE	34	28	17	18	12

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S2284. Gene #232: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GABBR1 MUTATED	7	2	1
GABBR1 WILD-TYPE	64	25	20

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S2285. Gene #232: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GABBR1 MUTATED	1	0	1	2	3	1	1
GABBR1 WILD-TYPE	17	8	9	6	33	24	11

'GABBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S2286. Gene #232: 'GABBR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GABBR1 MUTATED	2	0	2	3	1	1
GABBR1 WILD-TYPE	15	32	11	29	15	6

'PAMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S2287. Gene #233: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PAMR1 MUTATED	0	3	3	1
PAMR1 WILD-TYPE	19	50	27	23

'PAMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S2288. Gene #233: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PAMR1 MUTATED	4	2	0	1
PAMR1 WILD-TYPE	31	28	34	25

'PAMR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S2289. Gene #233: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PAMR1 MUTATED	3	1	2	1	0
PAMR1 WILD-TYPE	26	17	11	8	13

'PAMR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S2290. Gene #233: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PAMR1 MUTATED	4	1	0	0	2
PAMR1 WILD-TYPE	28	17	12	10	8

'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S2291. Gene #233: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PAMR1 MUTATED	3	2	0	1	1
PAMR1 WILD-TYPE	23	18	28	24	19

'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S2292. Gene #233: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PAMR1 MUTATED	2	4	1
PAMR1 WILD-TYPE	46	49	17

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S2293. Gene #233: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PAMR1 MUTATED	4	1	0	1	1
PAMR1 WILD-TYPE	33	30	17	20	12

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S2294. Gene #233: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PAMR1 MUTATED	6	0	1
PAMR1 WILD-TYPE	65	27	20

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S2295. Gene #233: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PAMR1 MUTATED	1	0	1	0	2	3	0
PAMR1 WILD-TYPE	17	8	9	8	34	22	12

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S2296. Gene #233: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PAMR1 MUTATED	1	3	0	1	2	0
PAMR1 WILD-TYPE	16	29	13	31	14	7

'GRHPR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 1

Table S2297. Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GRHPR MUTATED	1	0	1	3
GRHPR WILD-TYPE	18	53	29	21

Figure S108. Get High-res Image Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GRHPR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 1

Table S2298. Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GRHPR MUTATED	0	0	2	3
GRHPR WILD-TYPE	35	30	32	23

'GRHPR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S2299. Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GRHPR MUTATED	1	1	0	0	1
GRHPR WILD-TYPE	28	17	13	9	12

'GRHPR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S2300. Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GRHPR MUTATED	1	1	0	0	1
GRHPR WILD-TYPE	31	17	12	10	9

'GRHPR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S2301. Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GRHPR MUTATED	1	1	0	0	2
GRHPR WILD-TYPE	25	19	28	25	18

'GRHPR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S2302. Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GRHPR MUTATED	0	3	1
GRHPR WILD-TYPE	48	50	17

'GRHPR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S2303. Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GRHPR MUTATED	2	2	0	0	0
GRHPR WILD-TYPE	35	29	17	21	13

'GRHPR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S2304. Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GRHPR MUTATED	3	0	1
GRHPR WILD-TYPE	68	27	20

'GRHPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S2305. Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GRHPR MUTATED	0	0	0	0	1	3	0
GRHPR WILD-TYPE	18	8	10	8	35	22	12

'GRHPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S2306. Gene #234: 'GRHPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GRHPR MUTATED	0	2	1	0	1	0
GRHPR WILD-TYPE	17	30	12	32	15	7

'CYP20A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S2307. Gene #235: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CYP20A1 MUTATED	2	1	2	1
CYP20A1 WILD-TYPE	17	52	28	23

'CYP20A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S2308. Gene #235: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CYP20A1 MUTATED	1	2	1	2
CYP20A1 WILD-TYPE	34	28	33	24

'CYP20A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S2309. Gene #235: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CYP20A1 MUTATED	0	1	1	1	0
CYP20A1 WILD-TYPE	29	17	12	8	13

'CYP20A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S2310. Gene #235: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CYP20A1 MUTATED	1	1	0	0	1
CYP20A1 WILD-TYPE	31	17	12	10	9

'CYP20A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S2311. Gene #235: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CYP20A1 MUTATED	0	2	1	1	2
CYP20A1 WILD-TYPE	26	18	27	24	18

'CYP20A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S2312. Gene #235: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CYP20A1 MUTATED	1	3	2
CYP20A1 WILD-TYPE	47	50	16

'CYP20A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0875 (Fisher's exact test), Q value = 1

Table S2313. Gene #235: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CYP20A1 MUTATED	0	2	0	3	1
CYP20A1 WILD-TYPE	37	29	17	18	12

'CYP20A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S2314. Gene #235: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CYP20A1 MUTATED	4	0	2
CYP20A1 WILD-TYPE	67	27	19

'CYP20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S2315. Gene #235: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CYP20A1 MUTATED	0	0	1	1	2	2	0
CYP20A1 WILD-TYPE	18	8	9	7	34	23	12

'CYP20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S2316. Gene #235: 'CYP20A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CYP20A1 MUTATED	0	1	2	1	1	1
CYP20A1 WILD-TYPE	17	31	11	31	15	6

'ARMCX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S2317. Gene #236: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ARMCX3 MUTATED	1	1	1	2
ARMCX3 WILD-TYPE	18	52	29	22

'ARMCX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S2318. Gene #236: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ARMCX3 MUTATED	2	0	1	2
ARMCX3 WILD-TYPE	33	30	33	24

'ARMCX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S2319. Gene #236: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ARMCX3 MUTATED	3	1	0	1	0
ARMCX3 WILD-TYPE	26	17	13	8	13

'ARMCX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S2320. Gene #236: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ARMCX3 MUTATED	2	1	0	2	0
ARMCX3 WILD-TYPE	30	17	12	8	10

'ARMCX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S2321. Gene #236: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ARMCX3 MUTATED	2	2	0	1	0
ARMCX3 WILD-TYPE	24	18	28	24	20

'ARMCX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S2322. Gene #236: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ARMCX3 MUTATED	1	2	2
ARMCX3 WILD-TYPE	47	51	16

'ARMCX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S2323. Gene #236: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ARMCX3 MUTATED	2	0	0	1	2
ARMCX3 WILD-TYPE	35	31	17	20	11

'ARMCX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S2324. Gene #236: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ARMCX3 MUTATED	2	1	2
ARMCX3 WILD-TYPE	69	26	19

'ARMCX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S2325. Gene #236: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ARMCX3 MUTATED	0	0	0	0	3	1	1
ARMCX3 WILD-TYPE	18	8	10	8	33	24	11

'ARMCX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S2326. Gene #236: 'ARMCX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ARMCX3 MUTATED	0	1	1	1	2	0
ARMCX3 WILD-TYPE	17	31	12	31	14	7

'MED23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S2327. Gene #237: 'MED23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MED23 MUTATED	0	3	3	0
MED23 WILD-TYPE	19	50	27	24

'MED23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S2328. Gene #237: 'MED23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MED23 MUTATED	2	2	1	1
MED23 WILD-TYPE	33	28	33	25

'MED23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2329. Gene #237: 'MED23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MED23 MUTATED	2	1	0	1	0
MED23 WILD-TYPE	27	17	13	8	13

'MED23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S2330. Gene #237: 'MED23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MED23 MUTATED	3	1	0	0	0
MED23 WILD-TYPE	29	17	12	10	10

'MED23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S2331. Gene #237: 'MED23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MED23 MUTATED	1	1	1	3	0
MED23 WILD-TYPE	25	19	27	22	20

'MED23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S2332. Gene #237: 'MED23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MED23 MUTATED	3	2	1
MED23 WILD-TYPE	45	51	17

'MED23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S2333. Gene #237: 'MED23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MED23 MUTATED	1	1	2	1	1
MED23 WILD-TYPE	36	30	15	20	12

'MED23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S2334. Gene #237: 'MED23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MED23 MUTATED	3	2	1
MED23 WILD-TYPE	68	25	20

'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S2335. Gene #237: 'MED23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MED23 MUTATED	0	0	2	0	2	1	1
MED23 WILD-TYPE	18	8	8	8	34	24	11

'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S2336. Gene #237: 'MED23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MED23 MUTATED	0	2	0	3	1	0
MED23 WILD-TYPE	17	30	13	29	15	7

'AR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 1

Table S2337. Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AR MUTATED	1	2	5	0
AR WILD-TYPE	18	51	25	24

'AR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S2338. Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AR MUTATED	2	3	2	1
AR WILD-TYPE	33	27	32	25

'AR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S2339. Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AR MUTATED	1	1	0	1	0
AR WILD-TYPE	28	17	13	8	13

'AR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2340. Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AR MUTATED	2	1	0	0	0
AR WILD-TYPE	30	17	12	10	10

'AR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S2341. Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AR MUTATED	2	1	0	4	1
AR WILD-TYPE	24	19	28	21	19

'AR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0916 (Fisher's exact test), Q value = 1

Table S2342. Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AR MUTATED	6	1	1
AR WILD-TYPE	42	52	17

'AR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S2343. Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AR MUTATED	2	2	1	2	1
AR WILD-TYPE	35	29	16	19	12

'AR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00278 (Fisher's exact test), Q value = 1

Table S2344. Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AR MUTATED	2	6	0
AR WILD-TYPE	69	21	21

Figure S109. Get High-res Image Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S2345. Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AR MUTATED	3	0	1	1	1	1	1
AR WILD-TYPE	15	8	9	7	35	24	11

'AR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S2346. Gene #238: 'AR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AR MUTATED	0	1	0	5	1	1
AR WILD-TYPE	17	31	13	27	15	6

'NKTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S2347. Gene #239: 'NKTR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NKTR MUTATED	0	2	2	2
NKTR WILD-TYPE	19	51	28	22

'NKTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0878 (Fisher's exact test), Q value = 1

Table S2348. Gene #239: 'NKTR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NKTR MUTATED	3	3	0	0
NKTR WILD-TYPE	32	27	34	26

'NKTR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S2349. Gene #239: 'NKTR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NKTR MUTATED	3	1	0	1	0
NKTR WILD-TYPE	26	17	13	8	13

'NKTR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S2350. Gene #239: 'NKTR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NKTR MUTATED	4	1	0	0	0
NKTR WILD-TYPE	28	17	12	10	10

'NKTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 1

Table S2351. Gene #239: 'NKTR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NKTR MUTATED	1	1	0	4	0
NKTR WILD-TYPE	25	19	28	21	20

'NKTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S2352. Gene #239: 'NKTR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NKTR MUTATED	4	1	1
NKTR WILD-TYPE	44	52	17

'NKTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S2353. Gene #239: 'NKTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NKTR MUTATED	1	1	1	3	0
NKTR WILD-TYPE	36	30	16	18	13

'NKTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S2354. Gene #239: 'NKTR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NKTR MUTATED	3	2	1
NKTR WILD-TYPE	68	25	20

'NKTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S2355. Gene #239: 'NKTR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NKTR MUTATED	1	0	2	1	1	0	1
NKTR WILD-TYPE	17	8	8	7	35	25	11

'NKTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S2356. Gene #239: 'NKTR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NKTR MUTATED	0	1	0	4	0	1
NKTR WILD-TYPE	17	31	13	28	16	6

'VDAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S2357. Gene #240: 'VDAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
VDAC1 MUTATED	0	2	2	1
VDAC1 WILD-TYPE	19	51	28	23

'VDAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S2358. Gene #240: 'VDAC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
VDAC1 MUTATED	1	1	2	1
VDAC1 WILD-TYPE	34	29	32	25

'VDAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S2359. Gene #240: 'VDAC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
VDAC1 MUTATED	0	1	2	1	1
VDAC1 WILD-TYPE	26	19	26	24	19

'VDAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2360. Gene #240: 'VDAC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
VDAC1 MUTATED	2	2	1
VDAC1 WILD-TYPE	46	51	17

'VDAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S2361. Gene #240: 'VDAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
VDAC1 MUTATED	0	3	0	2	0
VDAC1 WILD-TYPE	37	28	17	19	13

'VDAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2362. Gene #240: 'VDAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
VDAC1 MUTATED	3	1	1
VDAC1 WILD-TYPE	68	26	20

'VDAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S2363. Gene #240: 'VDAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
VDAC1 MUTATED	0	0	1	0	0	3	1
VDAC1 WILD-TYPE	18	8	9	8	36	22	11

'VDAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S2364. Gene #240: 'VDAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
VDAC1 MUTATED	0	2	0	1	1	1
VDAC1 WILD-TYPE	17	30	13	31	15	6

'RIT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S2365. Gene #241: 'RIT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RIT1 MUTATED	1	2	1	0
RIT1 WILD-TYPE	18	51	29	24

'RIT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S2366. Gene #241: 'RIT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RIT1 MUTATED	1	1	2	0
RIT1 WILD-TYPE	34	29	32	26

'RIT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2367. Gene #241: 'RIT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RIT1 MUTATED	2	1	1	0	0
RIT1 WILD-TYPE	27	17	12	9	13

'RIT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S2368. Gene #241: 'RIT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RIT1 MUTATED	1	1	1	1	0
RIT1 WILD-TYPE	31	17	11	9	10

'RIT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S2369. Gene #241: 'RIT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RIT1 MUTATED	2	1	0	1	0
RIT1 WILD-TYPE	24	19	28	24	20

'RIT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S2370. Gene #241: 'RIT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RIT1 MUTATED	2	1	1
RIT1 WILD-TYPE	46	52	17

'RIT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S2371. Gene #241: 'RIT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RIT1 MUTATED	1	0	1	1	1
RIT1 WILD-TYPE	36	31	16	20	12

'RIT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S2372. Gene #241: 'RIT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RIT1 MUTATED	2	1	1
RIT1 WILD-TYPE	69	26	20

'RIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S2373. Gene #241: 'RIT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RIT1 MUTATED	0	0	0	0	1	1	2
RIT1 WILD-TYPE	18	8	10	8	35	24	10

'RIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S2374. Gene #241: 'RIT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RIT1 MUTATED	0	1	1	1	1	0
RIT1 WILD-TYPE	17	31	12	31	15	7

'FAM47C MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2375. Gene #242: 'FAM47C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FAM47C MUTATED	3	9	5	4
FAM47C WILD-TYPE	16	44	25	20

'FAM47C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S2376. Gene #242: 'FAM47C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FAM47C MUTATED	8	5	4	4
FAM47C WILD-TYPE	27	25	30	22

'FAM47C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S2377. Gene #242: 'FAM47C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FAM47C MUTATED	7	2	2	3	2
FAM47C WILD-TYPE	22	16	11	6	11

'FAM47C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S2378. Gene #242: 'FAM47C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FAM47C MUTATED	8	2	2	3	1
FAM47C WILD-TYPE	24	16	10	7	9

'FAM47C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S2379. Gene #242: 'FAM47C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FAM47C MUTATED	5	5	2	7	2
FAM47C WILD-TYPE	21	15	26	18	18

'FAM47C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S2380. Gene #242: 'FAM47C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FAM47C MUTATED	10	7	4
FAM47C WILD-TYPE	38	46	14

'FAM47C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S2381. Gene #242: 'FAM47C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FAM47C MUTATED	8	3	4	2	4
FAM47C WILD-TYPE	29	28	13	19	9

'FAM47C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S2382. Gene #242: 'FAM47C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FAM47C MUTATED	10	7	4
FAM47C WILD-TYPE	61	20	17

'FAM47C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S2383. Gene #242: 'FAM47C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FAM47C MUTATED	6	0	0	2	7	3	3
FAM47C WILD-TYPE	12	8	10	6	29	22	9

'FAM47C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S2384. Gene #242: 'FAM47C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FAM47C MUTATED	5	3	1	9	2	1
FAM47C WILD-TYPE	12	29	12	23	14	6

'SEC62 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 1

Table S2385. Gene #243: 'SEC62 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SEC62 MUTATED	3	1	1	0
SEC62 WILD-TYPE	16	52	29	24

'SEC62 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S2386. Gene #243: 'SEC62 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SEC62 MUTATED	3	1	1	0
SEC62 WILD-TYPE	32	29	33	26

'SEC62 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S2387. Gene #243: 'SEC62 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SEC62 MUTATED	1	0	1	1	0
SEC62 WILD-TYPE	28	18	12	8	13

'SEC62 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S2388. Gene #243: 'SEC62 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SEC62 MUTATED	1	0	0	1	1
SEC62 WILD-TYPE	31	18	12	9	9

'SEC62 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S2389. Gene #243: 'SEC62 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SEC62 MUTATED	0	1	1	2	1
SEC62 WILD-TYPE	26	19	27	23	19

'SEC62 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2390. Gene #243: 'SEC62 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SEC62 MUTATED	2	2	1
SEC62 WILD-TYPE	46	51	17

'SEC62 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S2391. Gene #243: 'SEC62 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SEC62 MUTATED	2	1	1	0	1
SEC62 WILD-TYPE	35	30	16	21	12

'SEC62 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S2392. Gene #243: 'SEC62 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SEC62 MUTATED	4	0	1
SEC62 WILD-TYPE	67	27	20

'SEC62 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S2393. Gene #243: 'SEC62 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SEC62 MUTATED	0	0	0	1	2	2	0
SEC62 WILD-TYPE	18	8	10	7	34	23	12

'SEC62 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S2394. Gene #243: 'SEC62 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SEC62 MUTATED	0	1	1	2	1	0
SEC62 WILD-TYPE	17	31	12	30	15	7

'CDC27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S2395. Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CDC27 MUTATED	0	2	2	2
CDC27 WILD-TYPE	19	51	28	22

'CDC27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S2396. Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CDC27 MUTATED	1	3	0	2
CDC27 WILD-TYPE	34	27	34	24

'CDC27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 1

Table S2397. Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CDC27 MUTATED	1	0	3	0	0
CDC27 WILD-TYPE	28	18	10	9	13

Figure S110. Get High-res Image Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDC27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S2398. Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CDC27 MUTATED	2	0	1	0	1
CDC27 WILD-TYPE	30	18	11	10	9

'CDC27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S2399. Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CDC27 MUTATED	0	0	1	3	2
CDC27 WILD-TYPE	26	20	27	22	18

'CDC27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S2400. Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CDC27 MUTATED	4	2	0
CDC27 WILD-TYPE	44	51	18

'CDC27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S2401. Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CDC27 MUTATED	1	2	2	1	0
CDC27 WILD-TYPE	36	29	15	20	13

'CDC27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S2402. Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CDC27 MUTATED	3	3	0
CDC27 WILD-TYPE	68	24	21

'CDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S2403. Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CDC27 MUTATED	2	0	1	0	1	2	0
CDC27 WILD-TYPE	16	8	9	8	35	23	12

'CDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S2404. Gene #244: 'CDC27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CDC27 MUTATED	1	1	0	3	1	0
CDC27 WILD-TYPE	16	31	13	29	15	7

'PLXNA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0055 (Fisher's exact test), Q value = 1

Table S2405. Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PLXNA3 MUTATED	0	0	3	4
PLXNA3 WILD-TYPE	19	53	27	20

Figure S111. Get High-res Image Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLXNA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S2406. Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PLXNA3 MUTATED	2	3	1	1
PLXNA3 WILD-TYPE	33	27	33	25

'PLXNA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S2407. Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PLXNA3 MUTATED	1	2	0	3	0
PLXNA3 WILD-TYPE	28	16	13	6	13

Figure S112. Get High-res Image Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PLXNA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S2408. Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PLXNA3 MUTATED	2	2	0	2	0
PLXNA3 WILD-TYPE	30	16	12	8	10

'PLXNA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S2409. Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PLXNA3 MUTATED	1	1	1	3	0
PLXNA3 WILD-TYPE	25	19	27	22	20

'PLXNA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S2410. Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PLXNA3 MUTATED	5	1	0
PLXNA3 WILD-TYPE	43	52	18

'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00996 (Fisher's exact test), Q value = 1

Table S2411. Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PLXNA3 MUTATED	0	0	3	2	1
PLXNA3 WILD-TYPE	37	31	14	19	12

Figure S113. Get High-res Image Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0565 (Fisher's exact test), Q value = 1

Table S2412. Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PLXNA3 MUTATED	2	4	0
PLXNA3 WILD-TYPE	69	23	21

'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 1

Table S2413. Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PLXNA3 MUTATED	4	0	1	0	1	0	0
PLXNA3 WILD-TYPE	14	8	9	8	35	25	12

Figure S114. Get High-res Image Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PLXNA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0623 (Fisher's exact test), Q value = 1

Table S2414. Gene #245: 'PLXNA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PLXNA3 MUTATED	0	0	1	5	0	0
PLXNA3 WILD-TYPE	17	32	12	27	16	7

'ACCN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S2415. Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ACCN2 MUTATED	0	3	2	1
ACCN2 WILD-TYPE	19	50	28	23

'ACCN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S2416. Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ACCN2 MUTATED	4	1	0	1
ACCN2 WILD-TYPE	31	29	34	25

'ACCN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 1

Table S2417. Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ACCN2 MUTATED	1	1	0	3	0
ACCN2 WILD-TYPE	28	17	13	6	13

Figure S115. Get High-res Image Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ACCN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S2418. Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ACCN2 MUTATED	2	1	0	2	0
ACCN2 WILD-TYPE	30	17	12	8	10

'ACCN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S2419. Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ACCN2 MUTATED	3	0	0	1	1
ACCN2 WILD-TYPE	23	20	28	24	19

'ACCN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S2420. Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ACCN2 MUTATED	2	3	0
ACCN2 WILD-TYPE	46	50	18

'ACCN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S2421. Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ACCN2 MUTATED	2	1	0	2	0
ACCN2 WILD-TYPE	35	30	17	19	13

'ACCN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S2422. Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ACCN2 MUTATED	4	1	0
ACCN2 WILD-TYPE	67	26	21

'ACCN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S2423. Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ACCN2 MUTATED	1	0	1	1	2	0	0
ACCN2 WILD-TYPE	17	8	9	7	34	25	12

'ACCN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S2424. Gene #246: 'ACCN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ACCN2 MUTATED	1	1	1	2	0	0
ACCN2 WILD-TYPE	16	31	12	30	16	7

'RGS22 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2425. Gene #247: 'RGS22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RGS22 MUTATED	1	2	1	1
RGS22 WILD-TYPE	18	51	29	23

'RGS22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S2426. Gene #247: 'RGS22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RGS22 MUTATED	1	1	2	1
RGS22 WILD-TYPE	34	29	32	25

'RGS22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2427. Gene #247: 'RGS22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RGS22 MUTATED	1	1	1	1	1
RGS22 WILD-TYPE	25	19	27	24	19

'RGS22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S2428. Gene #247: 'RGS22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RGS22 MUTATED	2	3	0
RGS22 WILD-TYPE	46	50	18

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S2429. Gene #247: 'RGS22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RGS22 MUTATED	2	1	1	0	1
RGS22 WILD-TYPE	35	30	16	21	12

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2430. Gene #247: 'RGS22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RGS22 MUTATED	3	1	1
RGS22 WILD-TYPE	68	26	20

'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S2431. Gene #247: 'RGS22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RGS22 MUTATED	0	0	1	1	0	2	1
RGS22 WILD-TYPE	18	8	9	7	36	23	11

'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S2432. Gene #247: 'RGS22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RGS22 MUTATED	0	2	1	2	0	0
RGS22 WILD-TYPE	17	30	12	30	16	7

'FRG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S2433. Gene #248: 'FRG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FRG1 MUTATED	2	2	1	2
FRG1 WILD-TYPE	17	51	29	22

'FRG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S2434. Gene #248: 'FRG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FRG1 MUTATED	2	0	3	2
FRG1 WILD-TYPE	33	30	31	24

'FRG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S2435. Gene #248: 'FRG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FRG1 MUTATED	1	0	0	0	2
FRG1 WILD-TYPE	28	18	13	9	11

'FRG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S2436. Gene #248: 'FRG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FRG1 MUTATED	2	0	0	0	1
FRG1 WILD-TYPE	30	18	12	10	9

'FRG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S2437. Gene #248: 'FRG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FRG1 MUTATED	1	0	3	0	3
FRG1 WILD-TYPE	25	20	25	25	17

'FRG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S2438. Gene #248: 'FRG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FRG1 MUTATED	2	4	1
FRG1 WILD-TYPE	46	49	17

'FRG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S2439. Gene #248: 'FRG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FRG1 MUTATED	2	3	0	2	0
FRG1 WILD-TYPE	35	28	17	19	13

'FRG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S2440. Gene #248: 'FRG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FRG1 MUTATED	6	1	0
FRG1 WILD-TYPE	65	26	21

'FRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S2441. Gene #248: 'FRG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FRG1 MUTATED	1	0	0	1	3	1	1
FRG1 WILD-TYPE	17	8	10	7	33	24	11

'FRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S2442. Gene #248: 'FRG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FRG1 MUTATED	1	4	1	1	0	0
FRG1 WILD-TYPE	16	28	12	31	16	7

'CCDC88A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S2443. Gene #249: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCDC88A MUTATED	1	4	0	1
CCDC88A WILD-TYPE	18	49	30	23

'CCDC88A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S2444. Gene #249: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCDC88A MUTATED	2	0	3	1
CCDC88A WILD-TYPE	33	30	31	25

'CCDC88A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S2445. Gene #249: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CCDC88A MUTATED	2	1	2	0	0
CCDC88A WILD-TYPE	27	17	11	9	13

'CCDC88A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S2446. Gene #249: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CCDC88A MUTATED	2	1	2	0	0
CCDC88A WILD-TYPE	30	17	10	10	10

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S2447. Gene #249: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCDC88A MUTATED	1	1	3	0	1
CCDC88A WILD-TYPE	25	19	25	25	19

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S2448. Gene #249: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCDC88A MUTATED	3	3	0
CCDC88A WILD-TYPE	45	50	18

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S2449. Gene #249: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCDC88A MUTATED	4	2	0	0	0
CCDC88A WILD-TYPE	33	29	17	21	13

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S2450. Gene #249: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCDC88A MUTATED	6	0	0
CCDC88A WILD-TYPE	65	27	21

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S2451. Gene #249: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCDC88A MUTATED	0	0	1	1	2	2	0
CCDC88A WILD-TYPE	18	8	9	7	34	23	12

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S2452. Gene #249: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCDC88A MUTATED	2	3	1	0	0	0
CCDC88A WILD-TYPE	15	29	12	32	16	7

'CR1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 1

Table S2453. Gene #250: 'CR1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CR1L MUTATED	1	0	2	2
CR1L WILD-TYPE	18	53	28	22

'CR1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S2454. Gene #250: 'CR1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CR1L MUTATED	2	0	2	1
CR1L WILD-TYPE	33	30	32	25

'CR1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S2455. Gene #250: 'CR1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CR1L MUTATED	3	0	0	1	1
CR1L WILD-TYPE	23	20	28	24	19

'CR1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2456. Gene #250: 'CR1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CR1L MUTATED	2	2	1
CR1L WILD-TYPE	46	51	17

'CR1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S2457. Gene #250: 'CR1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CR1L MUTATED	1	0	1	2	1
CR1L WILD-TYPE	36	31	16	19	12

'CR1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S2458. Gene #250: 'CR1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CR1L MUTATED	4	0	1
CR1L WILD-TYPE	67	27	20

'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S2459. Gene #250: 'CR1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CR1L MUTATED	0	0	1	1	2	0	0
CR1L WILD-TYPE	18	8	9	7	34	25	12

'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2460. Gene #250: 'CR1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CR1L MUTATED	1	1	0	1	1	0
CR1L WILD-TYPE	16	31	13	31	15	7

'HDLBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 1

Table S2461. Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HDLBP MUTATED	0	2	1	5
HDLBP WILD-TYPE	19	51	29	19

Figure S116. Get High-res Image Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HDLBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S2462. Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HDLBP MUTATED	2	2	4	0
HDLBP WILD-TYPE	33	28	30	26

'HDLBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S2463. Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HDLBP MUTATED	2	1	0	1	0
HDLBP WILD-TYPE	27	17	13	8	13

'HDLBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S2464. Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HDLBP MUTATED	3	1	0	0	0
HDLBP WILD-TYPE	29	17	12	10	10

'HDLBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S2465. Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HDLBP MUTATED	2	1	2	3	0
HDLBP WILD-TYPE	24	19	26	22	20

'HDLBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S2466. Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HDLBP MUTATED	4	4	0
HDLBP WILD-TYPE	44	49	18

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 1

Table S2467. Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HDLBP MUTATED	4	0	3	1	0
HDLBP WILD-TYPE	33	31	14	20	13

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S2468. Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HDLBP MUTATED	5	3	0
HDLBP WILD-TYPE	66	24	21

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S2469. Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HDLBP MUTATED	2	0	1	0	4	1	0
HDLBP WILD-TYPE	16	8	9	8	32	24	12

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S2470. Gene #251: 'HDLBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HDLBP MUTATED	1	3	0	4	0	0
HDLBP WILD-TYPE	16	29	13	28	16	7

'KBTBD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S2471. Gene #252: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KBTBD4 MUTATED	2	1	0	1
KBTBD4 WILD-TYPE	17	52	30	23

'KBTBD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 1

Table S2472. Gene #252: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KBTBD4 MUTATED	4	0	0	0
KBTBD4 WILD-TYPE	31	30	34	26

Figure S117. Get High-res Image Gene #252: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KBTBD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S2473. Gene #252: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KBTBD4 MUTATED	1	0	2	0	1
KBTBD4 WILD-TYPE	25	20	26	25	19

'KBTBD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S2474. Gene #252: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KBTBD4 MUTATED	1	3	0
KBTBD4 WILD-TYPE	47	50	18

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S2475. Gene #252: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KBTBD4 MUTATED	3	1	0	0	0
KBTBD4 WILD-TYPE	34	30	17	21	13

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S2476. Gene #252: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KBTBD4 MUTATED	4	0	0
KBTBD4 WILD-TYPE	67	27	21

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S2477. Gene #252: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KBTBD4 MUTATED	1	0	0	1	2	0	0
KBTBD4 WILD-TYPE	17	8	10	7	34	25	12

'KBTBD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S2478. Gene #252: 'KBTBD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KBTBD4 MUTATED	1	2	1	0	0	0
KBTBD4 WILD-TYPE	16	30	12	32	16	7

'SBSN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S2479. Gene #253: 'SBSN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SBSN MUTATED	1	1	2	1
SBSN WILD-TYPE	18	52	28	23

'SBSN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S2480. Gene #253: 'SBSN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SBSN MUTATED	3	0	1	1
SBSN WILD-TYPE	32	30	33	25

'SBSN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S2481. Gene #253: 'SBSN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SBSN MUTATED	3	0	0	2	0
SBSN WILD-TYPE	23	20	28	23	20

'SBSN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S2482. Gene #253: 'SBSN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SBSN MUTATED	3	2	0
SBSN WILD-TYPE	45	51	18

'SBSN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S2483. Gene #253: 'SBSN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SBSN MUTATED	1	1	0	3	0
SBSN WILD-TYPE	36	30	17	18	13

'SBSN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S2484. Gene #253: 'SBSN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SBSN MUTATED	4	1	0
SBSN WILD-TYPE	67	26	21

'SBSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 1

Table S2485. Gene #253: 'SBSN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SBSN MUTATED	1	0	3	0	1	0	0
SBSN WILD-TYPE	17	8	7	8	35	25	12

Figure S118. Get High-res Image Gene #253: 'SBSN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SBSN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S2486. Gene #253: 'SBSN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SBSN MUTATED	2	0	1	2	0	0
SBSN WILD-TYPE	15	32	12	30	16	7

'KCTD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S2487. Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KCTD3 MUTATED	0	1	1	2
KCTD3 WILD-TYPE	19	52	29	22

'KCTD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 1

Table S2488. Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KCTD3 MUTATED	4	0	0	0
KCTD3 WILD-TYPE	31	30	34	26

Figure S119. Get High-res Image Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCTD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S2489. Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KCTD3 MUTATED	2	0	1	1	0
KCTD3 WILD-TYPE	27	18	12	8	13

'KCTD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S2490. Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KCTD3 MUTATED	3	0	1	0	0
KCTD3 WILD-TYPE	29	18	11	10	10

'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S2491. Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KCTD3 MUTATED	1	0	1	2	0
KCTD3 WILD-TYPE	25	20	27	23	20

'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S2492. Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KCTD3 MUTATED	3	1	0
KCTD3 WILD-TYPE	45	52	18

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S2493. Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KCTD3 MUTATED	2	0	0	2	0
KCTD3 WILD-TYPE	35	31	17	19	13

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S2494. Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KCTD3 MUTATED	4	0	0
KCTD3 WILD-TYPE	67	27	21

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S2495. Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KCTD3 MUTATED	1	0	2	0	1	0	0
KCTD3 WILD-TYPE	17	8	8	8	35	25	12

'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S2496. Gene #254: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KCTD3 MUTATED	1	1	0	2	0	0
KCTD3 WILD-TYPE	16	31	13	30	16	7

'GUCY2F MUTATION STATUS' versus 'CN_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S2497. Gene #255: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GUCY2F MUTATED	1	1	2	3
GUCY2F WILD-TYPE	18	52	28	21

'GUCY2F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S2498. Gene #255: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GUCY2F MUTATED	3	1	1	2
GUCY2F WILD-TYPE	32	29	33	24

'GUCY2F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S2499. Gene #255: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GUCY2F MUTATED	3	1	1	1	0
GUCY2F WILD-TYPE	26	17	12	8	13

'GUCY2F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2500. Gene #255: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GUCY2F MUTATED	4	1	1	0	0
GUCY2F WILD-TYPE	28	17	11	10	10

'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S2501. Gene #255: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GUCY2F MUTATED	1	2	2	1	1
GUCY2F WILD-TYPE	25	18	26	24	19

'GUCY2F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S2502. Gene #255: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GUCY2F MUTATED	2	3	2
GUCY2F WILD-TYPE	46	50	16

'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S2503. Gene #255: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GUCY2F MUTATED	2	2	0	1	2
GUCY2F WILD-TYPE	35	29	17	20	11

'GUCY2F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2504. Gene #255: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GUCY2F MUTATED	5	1	1
GUCY2F WILD-TYPE	66	26	20

'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S2505. Gene #255: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GUCY2F MUTATED	0	0	1	1	2	2	1
GUCY2F WILD-TYPE	18	8	9	7	34	23	11

'GUCY2F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S2506. Gene #255: 'GUCY2F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GUCY2F MUTATED	0	3	1	1	1	1
GUCY2F WILD-TYPE	17	29	12	31	15	6

'PHIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2507. Gene #256: 'PHIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PHIP MUTATED	1	3	1	2
PHIP WILD-TYPE	18	50	29	22

'PHIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S2508. Gene #256: 'PHIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PHIP MUTATED	4	0	2	1
PHIP WILD-TYPE	31	30	32	25

'PHIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S2509. Gene #256: 'PHIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PHIP MUTATED	3	1	0	1	0
PHIP WILD-TYPE	26	17	13	8	13

'PHIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S2510. Gene #256: 'PHIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PHIP MUTATED	3	1	0	1	0
PHIP WILD-TYPE	29	17	12	9	10

'PHIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S2511. Gene #256: 'PHIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PHIP MUTATED	3	1	1	1	1
PHIP WILD-TYPE	23	19	27	24	19

'PHIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S2512. Gene #256: 'PHIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PHIP MUTATED	2	5	0
PHIP WILD-TYPE	46	48	18

'PHIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S2513. Gene #256: 'PHIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PHIP MUTATED	3	1	0	2	1
PHIP WILD-TYPE	34	30	17	19	12

'PHIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2514. Gene #256: 'PHIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PHIP MUTATED	5	1	1
PHIP WILD-TYPE	66	26	20

'PHIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S2515. Gene #256: 'PHIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PHIP MUTATED	1	1	1	1	2	1	0
PHIP WILD-TYPE	17	7	9	7	34	24	12

'PHIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S2516. Gene #256: 'PHIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PHIP MUTATED	1	1	2	2	1	0
PHIP WILD-TYPE	16	31	11	30	15	7

'FOXJ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S2517. Gene #257: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FOXJ2 MUTATED	1	2	2	0
FOXJ2 WILD-TYPE	18	51	28	24

'FOXJ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S2518. Gene #257: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FOXJ2 MUTATED	1	0	2	2
FOXJ2 WILD-TYPE	34	30	32	24

'FOXJ2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S2519. Gene #257: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FOXJ2 MUTATED	0	1	0	1	2
FOXJ2 WILD-TYPE	29	17	13	8	11

'FOXJ2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S2520. Gene #257: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FOXJ2 MUTATED	1	1	1	0	1
FOXJ2 WILD-TYPE	31	17	11	10	9

'FOXJ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S2521. Gene #257: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FOXJ2 MUTATED	1	0	1	2	1
FOXJ2 WILD-TYPE	25	20	27	23	19

'FOXJ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S2522. Gene #257: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FOXJ2 MUTATED	2	3	0
FOXJ2 WILD-TYPE	46	50	18

'FOXJ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S2523. Gene #257: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FOXJ2 MUTATED	2	2	0	1	0
FOXJ2 WILD-TYPE	35	29	17	20	13

'FOXJ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S2524. Gene #257: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FOXJ2 MUTATED	4	1	0
FOXJ2 WILD-TYPE	67	26	21

'FOXJ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S2525. Gene #257: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FOXJ2 MUTATED	0	0	2	1	2	0	0
FOXJ2 WILD-TYPE	18	8	8	7	34	25	12

'FOXJ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S2526. Gene #257: 'FOXJ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FOXJ2 MUTATED	0	2	1	2	0	0
FOXJ2 WILD-TYPE	17	30	12	30	16	7

'KIF3C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S2527. Gene #258: 'KIF3C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KIF3C MUTATED	1	1	2	0
KIF3C WILD-TYPE	18	52	28	24

'KIF3C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2528. Gene #258: 'KIF3C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KIF3C MUTATED	1	1	1	1
KIF3C WILD-TYPE	34	29	33	25

'KIF3C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S2529. Gene #258: 'KIF3C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KIF3C MUTATED	1	0	1	1	0
KIF3C WILD-TYPE	28	18	12	8	13

'KIF3C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S2530. Gene #258: 'KIF3C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KIF3C MUTATED	2	0	1	0	0
KIF3C WILD-TYPE	30	18	11	10	10

'KIF3C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S2531. Gene #258: 'KIF3C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KIF3C MUTATED	0	0	1	1	1
KIF3C WILD-TYPE	26	20	27	24	19

'KIF3C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S2532. Gene #258: 'KIF3C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KIF3C MUTATED	2	1	0
KIF3C WILD-TYPE	46	52	18

'KIF3C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2533. Gene #258: 'KIF3C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KIF3C MUTATED	1	1	0	1	0
KIF3C WILD-TYPE	36	30	17	20	13

'KIF3C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2534. Gene #258: 'KIF3C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KIF3C MUTATED	2	1	0
KIF3C WILD-TYPE	69	26	21

'KIF3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S2535. Gene #258: 'KIF3C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KIF3C MUTATED	0	0	1	0	1	1	0
KIF3C WILD-TYPE	18	8	9	8	35	24	12

'KIF3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S2536. Gene #258: 'KIF3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KIF3C MUTATED	0	1	0	1	1	0
KIF3C WILD-TYPE	17	31	13	31	15	7

'ZC3H13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S2537. Gene #259: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZC3H13 MUTATED	1	2	3	3
ZC3H13 WILD-TYPE	18	51	27	21

'ZC3H13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S2538. Gene #259: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZC3H13 MUTATED	4	2	2	1
ZC3H13 WILD-TYPE	31	28	32	25

'ZC3H13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S2539. Gene #259: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZC3H13 MUTATED	3	2	0	1	0
ZC3H13 WILD-TYPE	26	16	13	8	13

'ZC3H13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S2540. Gene #259: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZC3H13 MUTATED	5	1	0	0	0
ZC3H13 WILD-TYPE	27	17	12	10	10

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S2541. Gene #259: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZC3H13 MUTATED	1	2	1	3	2
ZC3H13 WILD-TYPE	25	18	27	22	18

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2542. Gene #259: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZC3H13 MUTATED	3	4	2
ZC3H13 WILD-TYPE	45	49	16

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S2543. Gene #259: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZC3H13 MUTATED	2	3	2	2	0
ZC3H13 WILD-TYPE	35	28	15	19	13

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S2544. Gene #259: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZC3H13 MUTATED	5	2	2
ZC3H13 WILD-TYPE	66	25	19

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S2545. Gene #259: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZC3H13 MUTATED	2	1	1	0	0	4	1
ZC3H13 WILD-TYPE	16	7	9	8	36	21	11

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S2546. Gene #259: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZC3H13 MUTATED	0	3	1	3	1	1
ZC3H13 WILD-TYPE	17	29	12	29	15	6

'NAGPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S2547. Gene #260: 'NAGPA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NAGPA MUTATED	2	1	2	0
NAGPA WILD-TYPE	17	52	28	24

'NAGPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2548. Gene #260: 'NAGPA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NAGPA MUTATED	2	1	1	1
NAGPA WILD-TYPE	33	29	33	25

'NAGPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S2549. Gene #260: 'NAGPA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NAGPA MUTATED	2	0	0	1	0
NAGPA WILD-TYPE	27	18	13	8	13

'NAGPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S2550. Gene #260: 'NAGPA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NAGPA MUTATED	3	0	0	0	0
NAGPA WILD-TYPE	29	18	12	10	10

'NAGPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S2551. Gene #260: 'NAGPA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NAGPA MUTATED	0	0	2	2	1
NAGPA WILD-TYPE	26	20	26	23	19

'NAGPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S2552. Gene #260: 'NAGPA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NAGPA MUTATED	3	2	0
NAGPA WILD-TYPE	45	51	18

'NAGPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2553. Gene #260: 'NAGPA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NAGPA MUTATED	2	1	1	1	0
NAGPA WILD-TYPE	35	30	16	20	13

'NAGPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S2554. Gene #260: 'NAGPA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NAGPA MUTATED	3	2	0
NAGPA WILD-TYPE	68	25	21

'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S2555. Gene #260: 'NAGPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NAGPA MUTATED	0	0	1	0	2	1	1
NAGPA WILD-TYPE	18	8	9	8	34	24	11

'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S2556. Gene #260: 'NAGPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NAGPA MUTATED	0	2	0	2	1	0
NAGPA WILD-TYPE	17	30	13	30	15	7

'CLIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S2557. Gene #261: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CLIP1 MUTATED	1	4	1	0
CLIP1 WILD-TYPE	18	49	29	24

'CLIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S2558. Gene #261: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CLIP1 MUTATED	3	0	2	1
CLIP1 WILD-TYPE	32	30	32	25

'CLIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S2559. Gene #261: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CLIP1 MUTATED	1	1	0	1	0
CLIP1 WILD-TYPE	28	17	13	8	13

'CLIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2560. Gene #261: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CLIP1 MUTATED	2	1	0	0	0
CLIP1 WILD-TYPE	30	17	12	10	10

'CLIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S2561. Gene #261: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CLIP1 MUTATED	2	0	1	2	1
CLIP1 WILD-TYPE	24	20	27	23	19

'CLIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S2562. Gene #261: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CLIP1 MUTATED	2	4	0
CLIP1 WILD-TYPE	46	49	18

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S2563. Gene #261: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CLIP1 MUTATED	1	1	1	3	0
CLIP1 WILD-TYPE	36	30	16	18	13

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S2564. Gene #261: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CLIP1 MUTATED	5	1	0
CLIP1 WILD-TYPE	66	26	21

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S2565. Gene #261: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CLIP1 MUTATED	1	0	2	1	2	0	0
CLIP1 WILD-TYPE	17	8	8	7	34	25	12

'CLIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S2566. Gene #261: 'CLIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CLIP1 MUTATED	1	1	2	2	0	0
CLIP1 WILD-TYPE	16	31	11	30	16	7

'FNDC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2567. Gene #262: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FNDC7 MUTATED	0	2	1	1
FNDC7 WILD-TYPE	19	51	29	23

'FNDC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2568. Gene #262: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FNDC7 MUTATED	1	1	1	1
FNDC7 WILD-TYPE	34	29	33	25

'FNDC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S2569. Gene #262: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FNDC7 MUTATED	2	0	0	0	1
FNDC7 WILD-TYPE	27	18	13	9	12

'FNDC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2570. Gene #262: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FNDC7 MUTATED	2	1	0	0	0
FNDC7 WILD-TYPE	30	17	12	10	10

'FNDC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S2571. Gene #262: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FNDC7 MUTATED	0	0	2	1	1
FNDC7 WILD-TYPE	26	20	26	24	19

'FNDC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S2572. Gene #262: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FNDC7 MUTATED	1	3	0
FNDC7 WILD-TYPE	47	50	18

'FNDC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S2573. Gene #262: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FNDC7 MUTATED	2	1	1	0	0
FNDC7 WILD-TYPE	35	30	16	21	13

'FNDC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2574. Gene #262: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FNDC7 MUTATED	3	1	0
FNDC7 WILD-TYPE	68	26	21

'FNDC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S2575. Gene #262: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FNDC7 MUTATED	1	0	0	1	2	0	0
FNDC7 WILD-TYPE	17	8	10	7	34	25	12

'FNDC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S2576. Gene #262: 'FNDC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FNDC7 MUTATED	0	2	1	1	0	0
FNDC7 WILD-TYPE	17	30	12	31	16	7

'MOGS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S2577. Gene #263: 'MOGS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MOGS MUTATED	2	2	1	0
MOGS WILD-TYPE	17	51	29	24

'MOGS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S2578. Gene #263: 'MOGS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MOGS MUTATED	1	0	3	1
MOGS WILD-TYPE	34	30	31	25

'MOGS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S2579. Gene #263: 'MOGS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MOGS MUTATED	0	1	2	1	0
MOGS WILD-TYPE	29	17	11	8	13

'MOGS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S2580. Gene #263: 'MOGS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MOGS MUTATED	1	1	2	0	0
MOGS WILD-TYPE	31	17	10	10	10

'MOGS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S2581. Gene #263: 'MOGS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MOGS MUTATED	0	0	3	1	1
MOGS WILD-TYPE	26	20	25	24	19

'MOGS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S2582. Gene #263: 'MOGS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MOGS MUTATED	2	3	0
MOGS WILD-TYPE	46	50	18

'MOGS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S2583. Gene #263: 'MOGS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MOGS MUTATED	1	3	0	1	0
MOGS WILD-TYPE	36	28	17	20	13

'MOGS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S2584. Gene #263: 'MOGS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MOGS MUTATED	5	0	0
MOGS WILD-TYPE	66	27	21

'MOGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S2585. Gene #263: 'MOGS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MOGS MUTATED	0	1	1	1	1	1	0
MOGS WILD-TYPE	18	7	9	7	35	24	12

'MOGS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S2586. Gene #263: 'MOGS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MOGS MUTATED	1	1	1	2	0	0
MOGS WILD-TYPE	16	31	12	30	16	7

'BCL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S2587. Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BCL3 MUTATED	0	3	2	0
BCL3 WILD-TYPE	19	50	28	24

'BCL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S2588. Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BCL3 MUTATED	2	0	2	1
BCL3 WILD-TYPE	33	30	32	25

'BCL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 1

Table S2589. Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BCL3 MUTATED	0	0	1	2	1
BCL3 WILD-TYPE	29	18	12	7	12

Figure S120. Get High-res Image Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S2590. Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BCL3 MUTATED	1	0	1	1	1
BCL3 WILD-TYPE	31	18	11	9	9

'BCL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S2591. Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BCL3 MUTATED	0	0	2	2	1
BCL3 WILD-TYPE	26	20	26	23	19

'BCL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S2592. Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BCL3 MUTATED	3	2	0
BCL3 WILD-TYPE	45	51	18

'BCL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2593. Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BCL3 MUTATED	2	1	1	1	0
BCL3 WILD-TYPE	35	30	16	20	13

'BCL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S2594. Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BCL3 MUTATED	5	0	0
BCL3 WILD-TYPE	66	27	21

'BCL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S2595. Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BCL3 MUTATED	0	1	1	0	2	1	0
BCL3 WILD-TYPE	18	7	9	8	34	24	12

'BCL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S2596. Gene #264: 'BCL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BCL3 MUTATED	0	2	0	2	1	0
BCL3 WILD-TYPE	17	30	13	30	15	7

'MED12L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S2597. Gene #265: 'MED12L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MED12L MUTATED	2	4	5	2
MED12L WILD-TYPE	17	49	25	22

'MED12L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S2598. Gene #265: 'MED12L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MED12L MUTATED	4	3	4	2
MED12L WILD-TYPE	31	27	30	24

'MED12L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S2599. Gene #265: 'MED12L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MED12L MUTATED	3	2	2	1	2
MED12L WILD-TYPE	26	16	11	8	11

'MED12L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S2600. Gene #265: 'MED12L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MED12L MUTATED	5	2	1	0	2
MED12L WILD-TYPE	27	16	11	10	8

'MED12L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S2601. Gene #265: 'MED12L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MED12L MUTATED	3	1	4	4	1
MED12L WILD-TYPE	23	19	24	21	19

'MED12L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S2602. Gene #265: 'MED12L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MED12L MUTATED	8	4	1
MED12L WILD-TYPE	40	49	17

'MED12L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S2603. Gene #265: 'MED12L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MED12L MUTATED	5	2	3	2	1
MED12L WILD-TYPE	32	29	14	19	12

'MED12L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S2604. Gene #265: 'MED12L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MED12L MUTATED	9	3	1
MED12L WILD-TYPE	62	24	20

'MED12L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S2605. Gene #265: 'MED12L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MED12L MUTATED	2	1	1	0	4	2	2
MED12L WILD-TYPE	16	7	9	8	32	23	10

'MED12L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S2606. Gene #265: 'MED12L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MED12L MUTATED	0	5	0	5	2	0
MED12L WILD-TYPE	17	27	13	27	14	7

'EXOC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S2607. Gene #266: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EXOC4 MUTATED	1	1	2	3
EXOC4 WILD-TYPE	18	52	28	21

'EXOC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S2608. Gene #266: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EXOC4 MUTATED	4	1	2	0
EXOC4 WILD-TYPE	31	29	32	26

'EXOC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S2609. Gene #266: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EXOC4 MUTATED	4	0	0	1	0
EXOC4 WILD-TYPE	25	18	13	8	13

'EXOC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S2610. Gene #266: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EXOC4 MUTATED	5	0	0	0	0
EXOC4 WILD-TYPE	27	18	12	10	10

'EXOC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S2611. Gene #266: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EXOC4 MUTATED	2	1	1	2	1
EXOC4 WILD-TYPE	24	19	27	23	19

'EXOC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2612. Gene #266: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EXOC4 MUTATED	3	3	1
EXOC4 WILD-TYPE	45	50	17

'EXOC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S2613. Gene #266: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EXOC4 MUTATED	3	2	1	1	0
EXOC4 WILD-TYPE	34	29	16	20	13

'EXOC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2614. Gene #266: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EXOC4 MUTATED	5	1	1
EXOC4 WILD-TYPE	66	26	20

'EXOC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S2615. Gene #266: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EXOC4 MUTATED	0	0	1	1	3	2	0
EXOC4 WILD-TYPE	18	8	9	7	33	23	12

'EXOC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2616. Gene #266: 'EXOC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EXOC4 MUTATED	1	2	1	2	1	0
EXOC4 WILD-TYPE	16	30	12	30	15	7

'MARCH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S2617. Gene #267: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MARCH7 MUTATED	1	2	0	1
MARCH7 WILD-TYPE	18	51	30	23

'MARCH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S2618. Gene #267: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MARCH7 MUTATED	1	0	3	0
MARCH7 WILD-TYPE	34	30	31	26

'MARCH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S2619. Gene #267: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MARCH7 MUTATED	1	2	0	0	1
MARCH7 WILD-TYPE	28	16	13	9	12

'MARCH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S2620. Gene #267: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MARCH7 MUTATED	1	2	1	0	0
MARCH7 WILD-TYPE	31	16	11	10	10

'MARCH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S2621. Gene #267: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MARCH7 MUTATED	1	0	3	0	0
MARCH7 WILD-TYPE	25	20	25	25	20

'MARCH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S2622. Gene #267: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MARCH7 MUTATED	1	3	0
MARCH7 WILD-TYPE	47	50	18

'MARCH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S2623. Gene #267: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MARCH7 MUTATED	4	0	0	0	0
MARCH7 WILD-TYPE	33	31	17	21	13

'MARCH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S2624. Gene #267: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MARCH7 MUTATED	4	0	0
MARCH7 WILD-TYPE	67	27	21

'MARCH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S2625. Gene #267: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MARCH7 MUTATED	0	0	0	0	4	0	0
MARCH7 WILD-TYPE	18	8	10	8	32	25	12

'MARCH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S2626. Gene #267: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MARCH7 MUTATED	0	4	0	0	0	0
MARCH7 WILD-TYPE	17	28	13	32	16	7

'TMCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S2627. Gene #268: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TMCC1 MUTATED	0	1	2	3
TMCC1 WILD-TYPE	19	52	28	21

'TMCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S2628. Gene #268: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TMCC1 MUTATED	1	2	1	2
TMCC1 WILD-TYPE	34	28	33	24

'TMCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S2629. Gene #268: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TMCC1 MUTATED	0	0	1	3	2
TMCC1 WILD-TYPE	26	20	27	22	18

'TMCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S2630. Gene #268: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TMCC1 MUTATED	4	2	0
TMCC1 WILD-TYPE	44	51	18

'TMCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S2631. Gene #268: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TMCC1 MUTATED	0	3	1	2	0
TMCC1 WILD-TYPE	37	28	16	19	13

'TMCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S2632. Gene #268: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TMCC1 MUTATED	4	2	0
TMCC1 WILD-TYPE	67	25	21

'TMCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S2633. Gene #268: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TMCC1 MUTATED	0	0	1	0	1	3	0
TMCC1 WILD-TYPE	18	8	9	8	35	22	12

'TMCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S2634. Gene #268: 'TMCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TMCC1 MUTATED	0	2	1	2	0	0
TMCC1 WILD-TYPE	17	30	12	30	16	7

'NBPF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S2635. Gene #269: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NBPF10 MUTATED	1	6	2	0
NBPF10 WILD-TYPE	18	47	28	24

'NBPF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S2636. Gene #269: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NBPF10 MUTATED	5	1	2	0
NBPF10 WILD-TYPE	30	29	32	26

'NBPF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S2637. Gene #269: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NBPF10 MUTATED	1	2	1	0	1
NBPF10 WILD-TYPE	28	16	12	9	12

'NBPF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S2638. Gene #269: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NBPF10 MUTATED	1	2	1	0	1
NBPF10 WILD-TYPE	31	16	11	10	9

'NBPF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S2639. Gene #269: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NBPF10 MUTATED	3	0	4	1	0
NBPF10 WILD-TYPE	23	20	24	24	20

'NBPF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S2640. Gene #269: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NBPF10 MUTATED	3	5	0
NBPF10 WILD-TYPE	45	48	18

'NBPF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S2641. Gene #269: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NBPF10 MUTATED	5	1	0	2	0
NBPF10 WILD-TYPE	32	30	17	19	13

'NBPF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S2642. Gene #269: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NBPF10 MUTATED	7	1	0
NBPF10 WILD-TYPE	64	26	21

'NBPF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S2643. Gene #269: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NBPF10 MUTATED	0	0	1	1	5	0	0
NBPF10 WILD-TYPE	18	8	9	7	31	25	12

'NBPF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S2644. Gene #269: 'NBPF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NBPF10 MUTATED	1	4	1	1	0	0
NBPF10 WILD-TYPE	16	28	12	31	16	7

'IFFO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S2645. Gene #270: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IFFO1 MUTATED	0	2	1	2
IFFO1 WILD-TYPE	19	51	29	22

'IFFO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S2646. Gene #270: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IFFO1 MUTATED	1	1	3	0
IFFO1 WILD-TYPE	34	29	31	26

'IFFO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2647. Gene #270: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
IFFO1 MUTATED	2	1	0	1	0
IFFO1 WILD-TYPE	27	17	13	8	13

'IFFO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S2648. Gene #270: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
IFFO1 MUTATED	2	1	0	1	0
IFFO1 WILD-TYPE	30	17	12	9	10

'IFFO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S2649. Gene #270: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IFFO1 MUTATED	3	1	0	1	0
IFFO1 WILD-TYPE	23	19	28	24	20

'IFFO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S2650. Gene #270: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IFFO1 MUTATED	3	1	1
IFFO1 WILD-TYPE	45	52	17

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S2651. Gene #270: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IFFO1 MUTATED	2	0	0	3	0
IFFO1 WILD-TYPE	35	31	17	18	13

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S2652. Gene #270: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IFFO1 MUTATED	4	0	1
IFFO1 WILD-TYPE	67	27	20

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S2653. Gene #270: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IFFO1 MUTATED	0	0	1	0	2	1	1
IFFO1 WILD-TYPE	18	8	9	8	34	24	11

'IFFO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S2654. Gene #270: 'IFFO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IFFO1 MUTATED	1	1	1	1	0	1
IFFO1 WILD-TYPE	16	31	12	31	16	6

'ARHGEF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 1

Table S2655. Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ARHGEF7 MUTATED	2	0	3	1
ARHGEF7 WILD-TYPE	17	53	27	23

Figure S121. Get High-res Image Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGEF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S2656. Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ARHGEF7 MUTATED	2	1	1	2
ARHGEF7 WILD-TYPE	33	29	33	24

'ARHGEF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S2657. Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ARHGEF7 MUTATED	2	0	1	1	0
ARHGEF7 WILD-TYPE	27	18	12	8	13

'ARHGEF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S2658. Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ARHGEF7 MUTATED	3	0	0	0	1
ARHGEF7 WILD-TYPE	29	18	12	10	9

'ARHGEF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S2659. Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ARHGEF7 MUTATED	0	0	1	2	3
ARHGEF7 WILD-TYPE	26	20	27	23	17

'ARHGEF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2660. Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ARHGEF7 MUTATED	2	3	1
ARHGEF7 WILD-TYPE	46	50	17

'ARHGEF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S2661. Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ARHGEF7 MUTATED	1	3	1	1	0
ARHGEF7 WILD-TYPE	36	28	16	20	13

'ARHGEF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2662. Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ARHGEF7 MUTATED	4	1	1
ARHGEF7 WILD-TYPE	67	26	20

'ARHGEF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S2663. Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ARHGEF7 MUTATED	0	0	1	1	2	2	0
ARHGEF7 WILD-TYPE	18	8	9	7	34	23	12

'ARHGEF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S2664. Gene #271: 'ARHGEF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ARHGEF7 MUTATED	0	1	1	2	2	0
ARHGEF7 WILD-TYPE	17	31	12	30	14	7

'ZNF878 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S2665. Gene #272: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF878 MUTATED	1	3	2	2
ZNF878 WILD-TYPE	18	50	28	22

'ZNF878 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S2666. Gene #272: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF878 MUTATED	3	2	1	2
ZNF878 WILD-TYPE	32	28	33	24

'ZNF878 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S2667. Gene #272: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF878 MUTATED	2	1	1	2	0
ZNF878 WILD-TYPE	27	17	12	7	13

'ZNF878 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S2668. Gene #272: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF878 MUTATED	3	1	0	1	1
ZNF878 WILD-TYPE	29	17	12	9	9

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S2669. Gene #272: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF878 MUTATED	1	2	2	2	1
ZNF878 WILD-TYPE	25	18	26	23	19

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S2670. Gene #272: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF878 MUTATED	4	2	2
ZNF878 WILD-TYPE	44	51	16

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S2671. Gene #272: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF878 MUTATED	2	2	1	2	1
ZNF878 WILD-TYPE	35	29	16	19	12

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S2672. Gene #272: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF878 MUTATED	4	2	2
ZNF878 WILD-TYPE	67	25	19

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S2673. Gene #272: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF878 MUTATED	3	0	1	0	1	2	1
ZNF878 WILD-TYPE	15	8	9	8	35	23	11

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S2674. Gene #272: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF878 MUTATED	2	1	1	3	1	0
ZNF878 WILD-TYPE	15	31	12	29	15	7

'AFF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S2675. Gene #273: 'AFF4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AFF4 MUTATED	1	2	1	0
AFF4 WILD-TYPE	18	51	29	24

'AFF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S2676. Gene #273: 'AFF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AFF4 MUTATED	1	1	2	0
AFF4 WILD-TYPE	34	29	32	26

'AFF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S2677. Gene #273: 'AFF4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AFF4 MUTATED	0	1	1	1	1
AFF4 WILD-TYPE	29	17	12	8	12

'AFF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.099 (Fisher's exact test), Q value = 1

Table S2678. Gene #273: 'AFF4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AFF4 MUTATED	0	1	2	1	0
AFF4 WILD-TYPE	32	17	10	9	10

'AFF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S2679. Gene #273: 'AFF4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AFF4 MUTATED	2	0	1	1	0
AFF4 WILD-TYPE	24	20	27	24	20

'AFF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S2680. Gene #273: 'AFF4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AFF4 MUTATED	3	1	0
AFF4 WILD-TYPE	45	52	18

'AFF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2681. Gene #273: 'AFF4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AFF4 MUTATED	2	1	0	1	0
AFF4 WILD-TYPE	35	30	17	20	13

'AFF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S2682. Gene #273: 'AFF4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AFF4 MUTATED	2	2	0
AFF4 WILD-TYPE	69	25	21

'AFF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2683. Gene #273: 'AFF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AFF4 MUTATED	1	0	0	0	2	1	0
AFF4 WILD-TYPE	17	8	10	8	34	24	12

'AFF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S2684. Gene #273: 'AFF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AFF4 MUTATED	0	1	0	3	0	0
AFF4 WILD-TYPE	17	31	13	29	16	7

'ZNF493 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S2685. Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF493 MUTATED	2	3	2	2
ZNF493 WILD-TYPE	17	50	28	22

'ZNF493 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S2686. Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF493 MUTATED	3	3	2	1
ZNF493 WILD-TYPE	32	27	32	25

'ZNF493 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 1

Table S2687. Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF493 MUTATED	0	1	2	2	0
ZNF493 WILD-TYPE	29	17	11	7	13

Figure S122. Get High-res Image Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF493 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S2688. Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF493 MUTATED	1	1	2	1	0
ZNF493 WILD-TYPE	31	17	10	9	10

'ZNF493 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S2689. Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF493 MUTATED	1	3	2	3	0
ZNF493 WILD-TYPE	25	17	26	22	20

'ZNF493 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S2690. Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF493 MUTATED	4	3	2
ZNF493 WILD-TYPE	44	50	16

'ZNF493 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S2691. Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF493 MUTATED	2	1	3	2	1
ZNF493 WILD-TYPE	35	30	14	19	12

'ZNF493 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S2692. Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF493 MUTATED	4	3	2
ZNF493 WILD-TYPE	67	24	19

'ZNF493 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S2693. Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF493 MUTATED	2	1	1	0	2	1	2
ZNF493 WILD-TYPE	16	7	9	8	34	24	10

'ZNF493 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S2694. Gene #274: 'ZNF493 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF493 MUTATED	3	1	0	4	0	1
ZNF493 WILD-TYPE	14	31	13	28	16	6

'HMGB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S2695. Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HMGB1 MUTATED	0	1	3	1
HMGB1 WILD-TYPE	19	52	27	23

'HMGB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 1

Table S2696. Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HMGB1 MUTATED	0	3	1	1
HMGB1 WILD-TYPE	35	27	33	25

'HMGB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S2697. Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HMGB1 MUTATED	1	1	2	0	0
HMGB1 WILD-TYPE	28	17	11	9	13

'HMGB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S2698. Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HMGB1 MUTATED	2	1	0	0	1
HMGB1 WILD-TYPE	30	17	12	10	9

'HMGB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 1

Table S2699. Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HMGB1 MUTATED	1	3	0	1	0
HMGB1 WILD-TYPE	25	17	28	24	20

'HMGB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00662 (Fisher's exact test), Q value = 1

Table S2700. Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HMGB1 MUTATED	2	0	3
HMGB1 WILD-TYPE	46	53	15

Figure S123. Get High-res Image Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HMGB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00909 (Fisher's exact test), Q value = 1

Table S2701. Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HMGB1 MUTATED	1	0	1	0	3
HMGB1 WILD-TYPE	36	31	16	21	10

Figure S124. Get High-res Image Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HMGB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S2702. Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HMGB1 MUTATED	1	2	2
HMGB1 WILD-TYPE	70	25	19

'HMGB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S2703. Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HMGB1 MUTATED	1	0	0	0	0	2	2
HMGB1 WILD-TYPE	17	8	10	8	36	23	10

'HMGB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S2704. Gene #275: 'HMGB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HMGB1 MUTATED	0	1	0	1	2	1
HMGB1 WILD-TYPE	17	31	13	31	14	6

'NKAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S2705. Gene #276: 'NKAP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NKAP MUTATED	0	1	2	1
NKAP WILD-TYPE	19	52	28	23

'NKAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S2706. Gene #276: 'NKAP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NKAP MUTATED	2	0	1	1
NKAP WILD-TYPE	33	30	33	25

'NKAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S2707. Gene #276: 'NKAP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NKAP MUTATED	1	1	0	1	0
NKAP WILD-TYPE	28	17	13	8	13

'NKAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2708. Gene #276: 'NKAP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NKAP MUTATED	2	1	0	0	0
NKAP WILD-TYPE	30	17	12	10	10

'NKAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S2709. Gene #276: 'NKAP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NKAP MUTATED	0	0	2	1	1
NKAP WILD-TYPE	26	20	26	24	19

'NKAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2710. Gene #276: 'NKAP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NKAP MUTATED	1	2	1
NKAP WILD-TYPE	47	51	17

'NKAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S2711. Gene #276: 'NKAP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NKAP MUTATED	1	1	0	1	1
NKAP WILD-TYPE	36	30	17	20	12

'NKAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S2712. Gene #276: 'NKAP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NKAP MUTATED	2	0	2
NKAP WILD-TYPE	69	27	19

'NKAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S2713. Gene #276: 'NKAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NKAP MUTATED	0	0	1	0	1	1	1
NKAP WILD-TYPE	18	8	9	8	35	24	11

'NKAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S2714. Gene #276: 'NKAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NKAP MUTATED	0	1	0	2	1	0
NKAP WILD-TYPE	17	31	13	30	15	7

'ZFP36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S2715. Gene #277: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZFP36 MUTATED	0	2	2	0
ZFP36 WILD-TYPE	19	51	28	24

'ZFP36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S2716. Gene #277: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZFP36 MUTATED	0	1	2	1
ZFP36 WILD-TYPE	35	29	32	25

'ZFP36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2717. Gene #277: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZFP36 MUTATED	2	1	0	0	0
ZFP36 WILD-TYPE	27	17	13	9	13

'ZFP36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S2718. Gene #277: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZFP36 MUTATED	1	1	0	1	0
ZFP36 WILD-TYPE	31	17	12	9	10

'ZFP36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S2719. Gene #277: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZFP36 MUTATED	2	1	0	1	0
ZFP36 WILD-TYPE	24	19	28	24	20

'ZFP36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S2720. Gene #277: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZFP36 MUTATED	1	2	1
ZFP36 WILD-TYPE	47	51	17

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S2721. Gene #277: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZFP36 MUTATED	0	1	0	2	1
ZFP36 WILD-TYPE	37	30	17	19	12

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2722. Gene #277: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZFP36 MUTATED	2	1	1
ZFP36 WILD-TYPE	69	26	20

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S2723. Gene #277: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZFP36 MUTATED	0	0	1	1	1	0	1
ZFP36 WILD-TYPE	18	8	9	7	35	25	11

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S2724. Gene #277: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZFP36 MUTATED	1	0	1	1	1	0
ZFP36 WILD-TYPE	16	32	12	31	15	7

'GIT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S2725. Gene #278: 'GIT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GIT1 MUTATED	1	1	2	1
GIT1 WILD-TYPE	18	52	28	23

'GIT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2726. Gene #278: 'GIT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GIT1 MUTATED	2	1	1	1
GIT1 WILD-TYPE	33	29	33	25

'GIT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S2727. Gene #278: 'GIT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GIT1 MUTATED	1	1	0	1	0
GIT1 WILD-TYPE	28	17	13	8	13

'GIT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2728. Gene #278: 'GIT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GIT1 MUTATED	2	1	0	0	0
GIT1 WILD-TYPE	30	17	12	10	10

'GIT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S2729. Gene #278: 'GIT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GIT1 MUTATED	0	1	1	3	0
GIT1 WILD-TYPE	26	19	27	22	20

'GIT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S2730. Gene #278: 'GIT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GIT1 MUTATED	3	1	1
GIT1 WILD-TYPE	45	52	17

'GIT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S2731. Gene #278: 'GIT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GIT1 MUTATED	1	1	1	1	1
GIT1 WILD-TYPE	36	30	16	20	12

'GIT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S2732. Gene #278: 'GIT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GIT1 MUTATED	2	2	1
GIT1 WILD-TYPE	69	25	20

'GIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S2733. Gene #278: 'GIT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GIT1 MUTATED	1	0	1	1	1	0	1
GIT1 WILD-TYPE	17	8	9	7	35	25	11

'GIT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S2734. Gene #278: 'GIT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GIT1 MUTATED	1	1	0	3	0	0
GIT1 WILD-TYPE	16	31	13	29	16	7

'RUNX1T1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S2735. Gene #279: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RUNX1T1 MUTATED	0	2	3	0
RUNX1T1 WILD-TYPE	19	51	27	24

'RUNX1T1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S2736. Gene #279: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RUNX1T1 MUTATED	3	0	2	0
RUNX1T1 WILD-TYPE	32	30	32	26

'RUNX1T1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S2737. Gene #279: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RUNX1T1 MUTATED	1	2	0	1	0
RUNX1T1 WILD-TYPE	28	16	13	8	13

'RUNX1T1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S2738. Gene #279: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RUNX1T1 MUTATED	3	1	0	0	0
RUNX1T1 WILD-TYPE	29	17	12	10	10

'RUNX1T1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S2739. Gene #279: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RUNX1T1 MUTATED	3	0	1	1	0
RUNX1T1 WILD-TYPE	23	20	27	24	20

'RUNX1T1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S2740. Gene #279: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RUNX1T1 MUTATED	2	3	0
RUNX1T1 WILD-TYPE	46	50	18

'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S2741. Gene #279: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RUNX1T1 MUTATED	2	1	0	2	0
RUNX1T1 WILD-TYPE	35	30	17	19	13

'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S2742. Gene #279: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RUNX1T1 MUTATED	5	0	0
RUNX1T1 WILD-TYPE	66	27	21

'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S2743. Gene #279: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RUNX1T1 MUTATED	0	1	1	0	1	1	0
RUNX1T1 WILD-TYPE	18	7	9	8	35	24	12

'RUNX1T1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S2744. Gene #279: 'RUNX1T1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RUNX1T1 MUTATED	1	2	0	1	0	0
RUNX1T1 WILD-TYPE	16	30	13	31	16	7

'RP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S2745. Gene #280: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RP1L1 MUTATED	3	6	3	2
RP1L1 WILD-TYPE	16	47	27	22

'RP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S2746. Gene #280: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RP1L1 MUTATED	7	3	2	2
RP1L1 WILD-TYPE	28	27	32	24

'RP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S2747. Gene #280: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RP1L1 MUTATED	5	1	1	2	1
RP1L1 WILD-TYPE	24	17	12	7	12

'RP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S2748. Gene #280: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RP1L1 MUTATED	6	1	0	1	2
RP1L1 WILD-TYPE	26	17	12	9	8

'RP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S2749. Gene #280: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RP1L1 MUTATED	4	1	1	5	3
RP1L1 WILD-TYPE	22	19	27	20	17

'RP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S2750. Gene #280: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RP1L1 MUTATED	6	8	0
RP1L1 WILD-TYPE	42	45	18

'RP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S2751. Gene #280: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RP1L1 MUTATED	4	4	2	3	1
RP1L1 WILD-TYPE	33	27	15	18	12

'RP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S2752. Gene #280: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RP1L1 MUTATED	10	4	0
RP1L1 WILD-TYPE	61	23	21

'RP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S2753. Gene #280: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RP1L1 MUTATED	3	1	1	2	4	2	1
RP1L1 WILD-TYPE	15	7	9	6	32	23	11

'RP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S2754. Gene #280: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RP1L1 MUTATED	1	4	2	6	1	0
RP1L1 WILD-TYPE	16	28	11	26	15	7

'AP2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S2755. Gene #281: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AP2A2 MUTATED	0	1	3	1
AP2A2 WILD-TYPE	19	52	27	23

'AP2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S2756. Gene #281: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AP2A2 MUTATED	1	1	2	1
AP2A2 WILD-TYPE	34	29	32	25

'AP2A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S2757. Gene #281: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AP2A2 MUTATED	1	1	0	1	1
AP2A2 WILD-TYPE	28	17	13	8	12

'AP2A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S2758. Gene #281: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AP2A2 MUTATED	1	1	0	1	1
AP2A2 WILD-TYPE	31	17	12	9	9

'AP2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2759. Gene #281: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AP2A2 MUTATED	1	1	1	1	1
AP2A2 WILD-TYPE	25	19	27	24	19

'AP2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S2760. Gene #281: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AP2A2 MUTATED	1	2	2
AP2A2 WILD-TYPE	47	51	16

'AP2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S2761. Gene #281: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AP2A2 MUTATED	1	1	0	2	1
AP2A2 WILD-TYPE	36	30	17	19	12

'AP2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2762. Gene #281: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AP2A2 MUTATED	3	1	1
AP2A2 WILD-TYPE	68	26	20

'AP2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S2763. Gene #281: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AP2A2 MUTATED	0	0	1	0	2	1	1
AP2A2 WILD-TYPE	18	8	9	8	34	24	11

'AP2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S2764. Gene #281: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AP2A2 MUTATED	0	1	1	1	1	1
AP2A2 WILD-TYPE	17	31	12	31	15	6

'EIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S2765. Gene #282: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EIF5B MUTATED	1	3	1	0
EIF5B WILD-TYPE	18	50	29	24

'EIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S2766. Gene #282: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EIF5B MUTATED	3	0	2	0
EIF5B WILD-TYPE	32	30	32	26

'EIF5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S2767. Gene #282: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EIF5B MUTATED	1	0	0	1	1
EIF5B WILD-TYPE	28	18	13	8	12

'EIF5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S2768. Gene #282: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EIF5B MUTATED	2	0	1	0	0
EIF5B WILD-TYPE	30	18	11	10	10

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S2769. Gene #282: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EIF5B MUTATED	1	1	1	2	0
EIF5B WILD-TYPE	25	19	27	23	20

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S2770. Gene #282: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EIF5B MUTATED	3	2	0
EIF5B WILD-TYPE	45	51	18

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S2771. Gene #282: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EIF5B MUTATED	2	0	1	1	1
EIF5B WILD-TYPE	35	31	16	20	12

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2772. Gene #282: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EIF5B MUTATED	3	1	1
EIF5B WILD-TYPE	68	26	20

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S2773. Gene #282: 'EIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EIF5B MUTATED	1	0	1	0	2	1	0
EIF5B WILD-TYPE	17	8	9	8	34	24	12

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S2774. Gene #282: 'EIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EIF5B MUTATED	0	2	0	2	1	0
EIF5B WILD-TYPE	17	30	13	30	15	7

'WHSC1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S2775. Gene #283: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
WHSC1L1 MUTATED	2	2	2	0
WHSC1L1 WILD-TYPE	17	51	28	24

'WHSC1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 1

Table S2776. Gene #283: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
WHSC1L1 MUTATED	0	3	3	0
WHSC1L1 WILD-TYPE	35	27	31	26

'WHSC1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2777. Gene #283: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
WHSC1L1 MUTATED	2	1	0	0	0
WHSC1L1 WILD-TYPE	27	17	13	9	13

'WHSC1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2778. Gene #283: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
WHSC1L1 MUTATED	2	1	0	0	0
WHSC1L1 WILD-TYPE	30	17	12	10	10

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S2779. Gene #283: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
WHSC1L1 MUTATED	2	1	1	2	0
WHSC1L1 WILD-TYPE	24	19	27	23	20

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S2780. Gene #283: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
WHSC1L1 MUTATED	3	2	1
WHSC1L1 WILD-TYPE	45	51	17

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S2781. Gene #283: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
WHSC1L1 MUTATED	2	1	1	2	0
WHSC1L1 WILD-TYPE	35	30	16	19	13

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S2782. Gene #283: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
WHSC1L1 MUTATED	3	2	1
WHSC1L1 WILD-TYPE	68	25	20

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S2783. Gene #283: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
WHSC1L1 MUTATED	0	0	1	1	3	0	1
WHSC1L1 WILD-TYPE	18	8	9	7	33	25	11

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S2784. Gene #283: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
WHSC1L1 MUTATED	1	2	0	2	0	1
WHSC1L1 WILD-TYPE	16	30	13	30	16	6

'BRCA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S2785. Gene #284: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BRCA2 MUTATED	1	3	3	0
BRCA2 WILD-TYPE	18	50	27	24

'BRCA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S2786. Gene #284: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BRCA2 MUTATED	2	1	3	1
BRCA2 WILD-TYPE	33	29	31	25

'BRCA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S2787. Gene #284: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BRCA2 MUTATED	1	0	0	2	1
BRCA2 WILD-TYPE	28	18	13	7	12

'BRCA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S2788. Gene #284: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BRCA2 MUTATED	1	0	0	2	1
BRCA2 WILD-TYPE	31	18	12	8	9

'BRCA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 1

Table S2789. Gene #284: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BRCA2 MUTATED	3	1	0	2	1
BRCA2 WILD-TYPE	23	19	28	23	19

'BRCA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S2790. Gene #284: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BRCA2 MUTATED	2	3	2
BRCA2 WILD-TYPE	46	50	16

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S2791. Gene #284: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BRCA2 MUTATED	2	1	1	3	0
BRCA2 WILD-TYPE	35	30	16	18	13

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S2792. Gene #284: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BRCA2 MUTATED	5	0	2
BRCA2 WILD-TYPE	66	27	19

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S2793. Gene #284: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BRCA2 MUTATED	0	0	1	0	4	1	1
BRCA2 WILD-TYPE	18	8	9	8	32	24	11

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S2794. Gene #284: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BRCA2 MUTATED	1	1	1	2	1	1
BRCA2 WILD-TYPE	16	31	12	30	15	6

'E2F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S2795. Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
E2F8 MUTATED	0	3	1	0
E2F8 WILD-TYPE	19	50	29	24

'E2F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 1

Table S2796. Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
E2F8 MUTATED	4	0	0	0
E2F8 WILD-TYPE	31	30	34	26

Figure S125. Get High-res Image Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'E2F8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S2797. Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
E2F8 MUTATED	2	1	0	1	0
E2F8 WILD-TYPE	27	17	13	8	13

'E2F8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S2798. Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
E2F8 MUTATED	3	1	0	0	0
E2F8 WILD-TYPE	29	17	12	10	10

'E2F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S2799. Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
E2F8 MUTATED	1	2	0	1	0
E2F8 WILD-TYPE	25	18	28	24	20

'E2F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S2800. Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
E2F8 MUTATED	3	1	0
E2F8 WILD-TYPE	45	52	18

'E2F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S2801. Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
E2F8 MUTATED	1	0	0	2	1
E2F8 WILD-TYPE	36	31	17	19	12

'E2F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S2802. Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
E2F8 MUTATED	3	0	1
E2F8 WILD-TYPE	68	27	20

'E2F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S2803. Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
E2F8 MUTATED	1	0	1	0	1	1	0
E2F8 WILD-TYPE	17	8	9	8	35	24	12

'E2F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S2804. Gene #285: 'E2F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
E2F8 MUTATED	0	1	0	2	1	0
E2F8 WILD-TYPE	17	31	13	30	15	7

'SPRR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2805. Gene #286: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SPRR4 MUTATED	0	2	1	1
SPRR4 WILD-TYPE	19	51	29	23

'SPRR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2806. Gene #286: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SPRR4 MUTATED	1	1	1	1
SPRR4 WILD-TYPE	34	29	33	25

'SPRR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2807. Gene #286: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SPRR4 MUTATED	2	1	0	0	0
SPRR4 WILD-TYPE	27	17	13	9	13

'SPRR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2808. Gene #286: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SPRR4 MUTATED	2	1	0	0	0
SPRR4 WILD-TYPE	30	17	12	10	10

'SPRR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S2809. Gene #286: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SPRR4 MUTATED	2	0	0	1	1
SPRR4 WILD-TYPE	24	20	28	24	19

'SPRR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2810. Gene #286: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SPRR4 MUTATED	2	2	0
SPRR4 WILD-TYPE	46	51	18

'SPRR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2811. Gene #286: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SPRR4 MUTATED	2	1	0	1	0
SPRR4 WILD-TYPE	35	30	17	20	13

'SPRR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2812. Gene #286: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SPRR4 MUTATED	3	1	0
SPRR4 WILD-TYPE	68	26	21

'SPRR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S2813. Gene #286: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SPRR4 MUTATED	1	0	1	0	1	1	0
SPRR4 WILD-TYPE	17	8	9	8	35	24	12

'SPRR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S2814. Gene #286: 'SPRR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SPRR4 MUTATED	0	2	1	1	0	0
SPRR4 WILD-TYPE	17	30	12	31	16	7

'ZMIZ2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2815. Gene #287: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZMIZ2 MUTATED	1	3	1	1
ZMIZ2 WILD-TYPE	18	50	29	23

'ZMIZ2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S2816. Gene #287: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZMIZ2 MUTATED	3	0	2	0
ZMIZ2 WILD-TYPE	32	30	32	26

'ZMIZ2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S2817. Gene #287: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZMIZ2 MUTATED	3	1	0	2	0
ZMIZ2 WILD-TYPE	26	17	13	7	13

'ZMIZ2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S2818. Gene #287: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZMIZ2 MUTATED	4	1	0	1	0
ZMIZ2 WILD-TYPE	28	17	12	9	10

'ZMIZ2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S2819. Gene #287: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZMIZ2 MUTATED	2	0	2	1	0
ZMIZ2 WILD-TYPE	24	20	26	24	20

'ZMIZ2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S2820. Gene #287: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZMIZ2 MUTATED	3	2	0
ZMIZ2 WILD-TYPE	45	51	18

'ZMIZ2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S2821. Gene #287: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZMIZ2 MUTATED	3	0	0	2	0
ZMIZ2 WILD-TYPE	34	31	17	19	13

'ZMIZ2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S2822. Gene #287: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZMIZ2 MUTATED	4	1	0
ZMIZ2 WILD-TYPE	67	26	21

'ZMIZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S2823. Gene #287: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZMIZ2 MUTATED	1	0	1	0	3	0	0
ZMIZ2 WILD-TYPE	17	8	9	8	33	25	12

'ZMIZ2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 1

Table S2824. Gene #287: 'ZMIZ2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZMIZ2 MUTATED	1	2	0	2	0	0
ZMIZ2 WILD-TYPE	16	30	13	30	16	7

'OR5H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S2825. Gene #288: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OR5H1 MUTATED	0	2	3	2
OR5H1 WILD-TYPE	19	51	27	22

'OR5H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S2826. Gene #288: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OR5H1 MUTATED	5	1	1	0
OR5H1 WILD-TYPE	30	29	33	26

'OR5H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S2827. Gene #288: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OR5H1 MUTATED	3	1	0	2	0
OR5H1 WILD-TYPE	26	17	13	7	13

'OR5H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S2828. Gene #288: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OR5H1 MUTATED	5	0	0	1	0
OR5H1 WILD-TYPE	27	18	12	9	10

'OR5H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S2829. Gene #288: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OR5H1 MUTATED	1	0	2	3	1
OR5H1 WILD-TYPE	25	20	26	22	19

'OR5H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S2830. Gene #288: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OR5H1 MUTATED	3	4	0
OR5H1 WILD-TYPE	45	49	18

'OR5H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S2831. Gene #288: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OR5H1 MUTATED	3	1	2	1	0
OR5H1 WILD-TYPE	34	30	15	20	13

'OR5H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S2832. Gene #288: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OR5H1 MUTATED	5	2	0
OR5H1 WILD-TYPE	66	25	21

'OR5H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S2833. Gene #288: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OR5H1 MUTATED	2	1	1	0	2	1	0
OR5H1 WILD-TYPE	16	7	9	8	34	24	12

'OR5H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S2834. Gene #288: 'OR5H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OR5H1 MUTATED	0	3	1	3	0	0
OR5H1 WILD-TYPE	17	29	12	29	16	7

'SMYD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S2835. Gene #289: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SMYD5 MUTATED	1	3	1	0
SMYD5 WILD-TYPE	18	50	29	24

'SMYD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S2836. Gene #289: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SMYD5 MUTATED	3	0	2	0
SMYD5 WILD-TYPE	32	30	32	26

'SMYD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S2837. Gene #289: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SMYD5 MUTATED	2	1	0	1	0
SMYD5 WILD-TYPE	27	17	13	8	13

'SMYD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S2838. Gene #289: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SMYD5 MUTATED	3	1	0	0	0
SMYD5 WILD-TYPE	29	17	12	10	10

'SMYD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S2839. Gene #289: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SMYD5 MUTATED	2	0	2	1	0
SMYD5 WILD-TYPE	24	20	26	24	20

'SMYD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S2840. Gene #289: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SMYD5 MUTATED	1	4	0
SMYD5 WILD-TYPE	47	49	18

'SMYD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S2841. Gene #289: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SMYD5 MUTATED	4	0	0	1	0
SMYD5 WILD-TYPE	33	31	17	20	13

'SMYD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S2842. Gene #289: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SMYD5 MUTATED	5	0	0
SMYD5 WILD-TYPE	66	27	21

'SMYD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S2843. Gene #289: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SMYD5 MUTATED	0	1	1	0	2	1	0
SMYD5 WILD-TYPE	18	7	9	8	34	24	12

'SMYD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S2844. Gene #289: 'SMYD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SMYD5 MUTATED	1	3	0	1	0	0
SMYD5 WILD-TYPE	16	29	13	31	16	7

'NIPA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S2845. Gene #290: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NIPA2 MUTATED	1	2	0	0
NIPA2 WILD-TYPE	18	51	30	24

'NIPA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S2846. Gene #290: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NIPA2 MUTATED	1	0	2	0
NIPA2 WILD-TYPE	34	30	32	26

'NIPA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S2847. Gene #290: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NIPA2 MUTATED	3	0	0	0	0
NIPA2 WILD-TYPE	26	18	13	9	13

'NIPA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S2848. Gene #290: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NIPA2 MUTATED	3	0	0	0	0
NIPA2 WILD-TYPE	29	18	12	10	10

'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S2849. Gene #290: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NIPA2 MUTATED	1	0	2	0	0
NIPA2 WILD-TYPE	25	20	26	25	20

'NIPA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S2850. Gene #290: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NIPA2 MUTATED	0	3	0
NIPA2 WILD-TYPE	48	50	18

'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S2851. Gene #290: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NIPA2 MUTATED	3	0	0	0	0
NIPA2 WILD-TYPE	34	31	17	21	13

'NIPA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S2852. Gene #290: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NIPA2 MUTATED	3	0	0
NIPA2 WILD-TYPE	68	27	21

'NIPA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S2853. Gene #290: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NIPA2 MUTATED	0	0	0	0	3	0	0
NIPA2 WILD-TYPE	18	8	10	8	33	25	12

'NIPA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S2854. Gene #290: 'NIPA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NIPA2 MUTATED	0	3	0	0	0	0
NIPA2 WILD-TYPE	17	29	13	32	16	7

'C7ORF16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S2855. Gene #291: 'C7ORF16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C7ORF16 MUTATED	1	2	1	0
C7ORF16 WILD-TYPE	18	51	29	24

'C7ORF16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S2856. Gene #291: 'C7ORF16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C7ORF16 MUTATED	0	2	1	1
C7ORF16 WILD-TYPE	35	28	33	25

'C7ORF16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S2857. Gene #291: 'C7ORF16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C7ORF16 MUTATED	1	2	0	0	0
C7ORF16 WILD-TYPE	25	18	28	25	20

'C7ORF16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 1

Table S2858. Gene #291: 'C7ORF16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C7ORF16 MUTATED	0	1	2
C7ORF16 WILD-TYPE	48	52	16

'C7ORF16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 1

Table S2859. Gene #291: 'C7ORF16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C7ORF16 MUTATED	0	0	0	2	1
C7ORF16 WILD-TYPE	37	31	17	19	12

Figure S126. Get High-res Image Gene #291: 'C7ORF16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C7ORF16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S2860. Gene #291: 'C7ORF16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C7ORF16 MUTATED	1	0	2
C7ORF16 WILD-TYPE	70	27	19

'C7ORF16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 1

Table S2861. Gene #291: 'C7ORF16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C7ORF16 MUTATED	0	0	1	0	0	0	2
C7ORF16 WILD-TYPE	18	8	9	8	36	25	10

Figure S127. Get High-res Image Gene #291: 'C7ORF16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C7ORF16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 1

Table S2862. Gene #291: 'C7ORF16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C7ORF16 MUTATED	1	0	0	0	1	1
C7ORF16 WILD-TYPE	16	32	13	32	15	6

'DOCK6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S2863. Gene #292: 'DOCK6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DOCK6 MUTATED	0	1	2	2
DOCK6 WILD-TYPE	19	52	28	22

'DOCK6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S2864. Gene #292: 'DOCK6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DOCK6 MUTATED	2	0	1	2
DOCK6 WILD-TYPE	33	30	33	24

'DOCK6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S2865. Gene #292: 'DOCK6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DOCK6 MUTATED	2	0	1	1	0
DOCK6 WILD-TYPE	27	18	12	8	13

'DOCK6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S2866. Gene #292: 'DOCK6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DOCK6 MUTATED	3	0	0	0	1
DOCK6 WILD-TYPE	29	18	12	10	9

'DOCK6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S2867. Gene #292: 'DOCK6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DOCK6 MUTATED	1	1	0	1	2
DOCK6 WILD-TYPE	25	19	28	24	18

'DOCK6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S2868. Gene #292: 'DOCK6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DOCK6 MUTATED	1	4	0
DOCK6 WILD-TYPE	47	49	18

'DOCK6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S2869. Gene #292: 'DOCK6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DOCK6 MUTATED	2	2	0	1	0
DOCK6 WILD-TYPE	35	29	17	20	13

'DOCK6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S2870. Gene #292: 'DOCK6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DOCK6 MUTATED	5	0	0
DOCK6 WILD-TYPE	66	27	21

'DOCK6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S2871. Gene #292: 'DOCK6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DOCK6 MUTATED	0	0	1	0	1	3	0
DOCK6 WILD-TYPE	18	8	9	8	35	22	12

'DOCK6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S2872. Gene #292: 'DOCK6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DOCK6 MUTATED	0	3	0	1	1	0
DOCK6 WILD-TYPE	17	29	13	31	15	7

'OR10A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S2873. Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OR10A2 MUTATED	0	1	2	1
OR10A2 WILD-TYPE	19	52	28	23

'OR10A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S2874. Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OR10A2 MUTATED	2	0	1	1
OR10A2 WILD-TYPE	33	30	33	25

'OR10A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2875. Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OR10A2 MUTATED	2	1	0	0	0
OR10A2 WILD-TYPE	27	17	13	9	13

'OR10A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S2876. Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OR10A2 MUTATED	1	1	0	1	0
OR10A2 WILD-TYPE	31	17	12	9	10

'OR10A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S2877. Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OR10A2 MUTATED	2	0	0	0	2
OR10A2 WILD-TYPE	24	20	28	25	18

'OR10A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S2878. Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OR10A2 MUTATED	0	4	0
OR10A2 WILD-TYPE	48	49	18

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S2879. Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OR10A2 MUTATED	0	2	0	2	0
OR10A2 WILD-TYPE	37	29	17	19	13

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S2880. Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OR10A2 MUTATED	4	0	0
OR10A2 WILD-TYPE	67	27	21

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S2881. Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OR10A2 MUTATED	0	0	0	1	1	1	0
OR10A2 WILD-TYPE	18	8	10	7	35	24	12

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00215 (Fisher's exact test), Q value = 1

Table S2882. Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OR10A2 MUTATED	0	0	3	0	0	0
OR10A2 WILD-TYPE	17	32	10	32	16	7

Figure S128. Get High-res Image Gene #293: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KDM2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S2883. Gene #294: 'KDM2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KDM2A MUTATED	0	2	1	2
KDM2A WILD-TYPE	19	51	29	22

'KDM2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S2884. Gene #294: 'KDM2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KDM2A MUTATED	2	1	2	0
KDM2A WILD-TYPE	33	29	32	26

'KDM2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S2885. Gene #294: 'KDM2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KDM2A MUTATED	2	1	0	1	1
KDM2A WILD-TYPE	27	17	13	8	12

'KDM2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S2886. Gene #294: 'KDM2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KDM2A MUTATED	3	1	0	0	1
KDM2A WILD-TYPE	29	17	12	10	9

'KDM2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S2887. Gene #294: 'KDM2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KDM2A MUTATED	0	0	2	3	0
KDM2A WILD-TYPE	26	20	26	22	20

'KDM2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S2888. Gene #294: 'KDM2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KDM2A MUTATED	4	1	0
KDM2A WILD-TYPE	44	52	18

'KDM2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S2889. Gene #294: 'KDM2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KDM2A MUTATED	2	0	1	2	0
KDM2A WILD-TYPE	35	31	16	19	13

'KDM2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S2890. Gene #294: 'KDM2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KDM2A MUTATED	4	1	0
KDM2A WILD-TYPE	67	26	21

'KDM2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S2891. Gene #294: 'KDM2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KDM2A MUTATED	1	0	2	0	2	0	0
KDM2A WILD-TYPE	17	8	8	8	34	25	12

'KDM2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S2892. Gene #294: 'KDM2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KDM2A MUTATED	0	2	0	3	0	0
KDM2A WILD-TYPE	17	30	13	29	16	7

'RBM45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S2893. Gene #295: 'RBM45 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RBM45 MUTATED	0	2	3	0
RBM45 WILD-TYPE	19	51	27	24

'RBM45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S2894. Gene #295: 'RBM45 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RBM45 MUTATED	2	1	2	0
RBM45 WILD-TYPE	33	29	32	26

'RBM45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S2895. Gene #295: 'RBM45 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RBM45 MUTATED	2	0	0	1	1
RBM45 WILD-TYPE	27	18	13	8	12

'RBM45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S2896. Gene #295: 'RBM45 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RBM45 MUTATED	3	0	0	0	1
RBM45 WILD-TYPE	29	18	12	10	9

'RBM45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S2897. Gene #295: 'RBM45 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RBM45 MUTATED	1	0	2	2	0
RBM45 WILD-TYPE	25	20	26	23	20

'RBM45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 1

Table S2898. Gene #295: 'RBM45 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RBM45 MUTATED	4	0	1
RBM45 WILD-TYPE	44	53	17

'RBM45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2899. Gene #295: 'RBM45 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RBM45 MUTATED	2	1	1	1	0
RBM45 WILD-TYPE	35	30	16	20	13

'RBM45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2900. Gene #295: 'RBM45 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RBM45 MUTATED	3	1	1
RBM45 WILD-TYPE	68	26	20

'RBM45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S2901. Gene #295: 'RBM45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RBM45 MUTATED	0	0	2	0	2	1	0
RBM45 WILD-TYPE	18	8	8	8	34	24	12

'RBM45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2902. Gene #295: 'RBM45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RBM45 MUTATED	1	1	0	2	1	0
RBM45 WILD-TYPE	16	31	13	30	15	7

'PHRF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 1

Table S2903. Gene #296: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PHRF1 MUTATED	1	0	3	0
PHRF1 WILD-TYPE	18	53	27	24

Figure S129. Get High-res Image Gene #296: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PHRF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S2904. Gene #296: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PHRF1 MUTATED	2	1	0	1
PHRF1 WILD-TYPE	33	29	34	25

'PHRF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S2905. Gene #296: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PHRF1 MUTATED	0	1	1	1	1
PHRF1 WILD-TYPE	26	19	27	24	19

'PHRF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S2906. Gene #296: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PHRF1 MUTATED	1	1	2
PHRF1 WILD-TYPE	47	52	16

'PHRF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S2907. Gene #296: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PHRF1 MUTATED	0	2	0	2	0
PHRF1 WILD-TYPE	37	29	17	19	13

'PHRF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S2908. Gene #296: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PHRF1 MUTATED	2	0	2
PHRF1 WILD-TYPE	69	27	19

'PHRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S2909. Gene #296: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PHRF1 MUTATED	0	0	1	1	0	1	1
PHRF1 WILD-TYPE	18	8	9	7	36	24	11

'PHRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S2910. Gene #296: 'PHRF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PHRF1 MUTATED	0	0	1	1	1	1
PHRF1 WILD-TYPE	17	32	12	31	15	6

'KCND3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S2911. Gene #297: 'KCND3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KCND3 MUTATED	1	2	2	0
KCND3 WILD-TYPE	18	51	28	24

'KCND3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2912. Gene #297: 'KCND3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KCND3 MUTATED	2	1	1	1
KCND3 WILD-TYPE	33	29	33	25

'KCND3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S2913. Gene #297: 'KCND3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KCND3 MUTATED	2	1	0	1	0
KCND3 WILD-TYPE	27	17	13	8	13

'KCND3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S2914. Gene #297: 'KCND3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KCND3 MUTATED	2	1	0	1	0
KCND3 WILD-TYPE	30	17	12	9	10

'KCND3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 1

Table S2915. Gene #297: 'KCND3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KCND3 MUTATED	2	0	0	3	0
KCND3 WILD-TYPE	24	20	28	22	20

'KCND3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S2916. Gene #297: 'KCND3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KCND3 MUTATED	3	2	0
KCND3 WILD-TYPE	45	51	18

'KCND3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S2917. Gene #297: 'KCND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KCND3 MUTATED	1	1	1	2	0
KCND3 WILD-TYPE	36	30	16	19	13

'KCND3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S2918. Gene #297: 'KCND3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KCND3 MUTATED	3	2	0
KCND3 WILD-TYPE	68	25	21

'KCND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S2919. Gene #297: 'KCND3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KCND3 MUTATED	0	0	2	0	1	1	1
KCND3 WILD-TYPE	18	8	8	8	35	24	11

'KCND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S2920. Gene #297: 'KCND3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KCND3 MUTATED	0	1	1	3	0	0
KCND3 WILD-TYPE	17	31	12	29	16	7

'CD1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S2921. Gene #298: 'CD1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CD1D MUTATED	0	3	2	1
CD1D WILD-TYPE	19	50	28	23

'CD1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S2922. Gene #298: 'CD1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CD1D MUTATED	3	0	2	1
CD1D WILD-TYPE	32	30	32	25

'CD1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S2923. Gene #298: 'CD1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CD1D MUTATED	4	1	0	1	0
CD1D WILD-TYPE	25	17	13	8	13

'CD1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S2924. Gene #298: 'CD1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CD1D MUTATED	5	1	0	0	0
CD1D WILD-TYPE	27	17	12	10	10

'CD1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S2925. Gene #298: 'CD1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CD1D MUTATED	1	2	1	1	1
CD1D WILD-TYPE	25	18	27	24	19

'CD1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2926. Gene #298: 'CD1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CD1D MUTATED	2	3	1
CD1D WILD-TYPE	46	50	17

'CD1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S2927. Gene #298: 'CD1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CD1D MUTATED	3	1	0	2	0
CD1D WILD-TYPE	34	30	17	19	13

'CD1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S2928. Gene #298: 'CD1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CD1D MUTATED	5	0	1
CD1D WILD-TYPE	66	27	20

'CD1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S2929. Gene #298: 'CD1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CD1D MUTATED	1	0	1	0	2	2	0
CD1D WILD-TYPE	17	8	9	8	34	23	12

'CD1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S2930. Gene #298: 'CD1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CD1D MUTATED	0	3	0	2	1	0
CD1D WILD-TYPE	17	29	13	30	15	7

'PHF21A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S2931. Gene #299: 'PHF21A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PHF21A MUTATED	1	1	1	1
PHF21A WILD-TYPE	18	52	29	23

'PHF21A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S2932. Gene #299: 'PHF21A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PHF21A MUTATED	1	1	2	0
PHF21A WILD-TYPE	34	29	32	26

'PHF21A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S2933. Gene #299: 'PHF21A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PHF21A MUTATED	0	1	1	1	0
PHF21A WILD-TYPE	29	17	12	8	13

'PHF21A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2934. Gene #299: 'PHF21A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PHF21A MUTATED	2	1	0	0	0
PHF21A WILD-TYPE	30	17	12	10	10

'PHF21A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S2935. Gene #299: 'PHF21A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PHF21A MUTATED	1	0	1	2	0
PHF21A WILD-TYPE	25	20	27	23	20

'PHF21A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2936. Gene #299: 'PHF21A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PHF21A MUTATED	2	2	0
PHF21A WILD-TYPE	46	51	18

'PHF21A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S2937. Gene #299: 'PHF21A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PHF21A MUTATED	1	1	1	1	0
PHF21A WILD-TYPE	36	30	16	20	13

'PHF21A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2938. Gene #299: 'PHF21A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PHF21A MUTATED	3	1	0
PHF21A WILD-TYPE	68	26	21

'PHF21A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S2939. Gene #299: 'PHF21A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PHF21A MUTATED	0	0	1	0	2	1	0
PHF21A WILD-TYPE	18	8	9	8	34	24	12

'PHF21A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S2940. Gene #299: 'PHF21A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PHF21A MUTATED	0	2	0	2	0	0
PHF21A WILD-TYPE	17	30	13	30	16	7

'STEAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S2941. Gene #300: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
STEAP2 MUTATED	0	2	1	2
STEAP2 WILD-TYPE	19	51	29	22

'STEAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S2942. Gene #300: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
STEAP2 MUTATED	1	1	3	0
STEAP2 WILD-TYPE	34	29	31	26

'STEAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S2943. Gene #300: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
STEAP2 MUTATED	1	0	1	1	1
STEAP2 WILD-TYPE	28	18	12	8	12

'STEAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S2944. Gene #300: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
STEAP2 MUTATED	2	0	1	0	1
STEAP2 WILD-TYPE	30	18	11	10	9

'STEAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S2945. Gene #300: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
STEAP2 MUTATED	0	2	2	1	0
STEAP2 WILD-TYPE	26	18	26	24	20

'STEAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2946. Gene #300: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
STEAP2 MUTATED	2	2	1
STEAP2 WILD-TYPE	46	51	17

'STEAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S2947. Gene #300: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
STEAP2 MUTATED	2	1	0	2	0
STEAP2 WILD-TYPE	35	30	17	19	13

'STEAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S2948. Gene #300: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
STEAP2 MUTATED	4	0	1
STEAP2 WILD-TYPE	67	27	20

'STEAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S2949. Gene #300: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
STEAP2 MUTATED	0	0	1	0	1	2	1
STEAP2 WILD-TYPE	18	8	9	8	35	23	11

'STEAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S2950. Gene #300: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
STEAP2 MUTATED	0	3	0	1	0	1
STEAP2 WILD-TYPE	17	29	13	31	16	6

'SALL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 1

Table S2951. Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SALL1 MUTATED	4	1	3	2
SALL1 WILD-TYPE	15	52	27	22

Figure S130. Get High-res Image Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SALL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S2952. Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SALL1 MUTATED	3	3	2	1
SALL1 WILD-TYPE	32	27	32	25

'SALL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 1

Table S2953. Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SALL1 MUTATED	1	4	0	2	0
SALL1 WILD-TYPE	28	14	13	7	13

Figure S131. Get High-res Image Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SALL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S2954. Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SALL1 MUTATED	2	4	0	1	0
SALL1 WILD-TYPE	30	14	12	9	10

'SALL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S2955. Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SALL1 MUTATED	2	1	1	3	2
SALL1 WILD-TYPE	24	19	27	22	18

'SALL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S2956. Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SALL1 MUTATED	4	5	0
SALL1 WILD-TYPE	44	48	18

'SALL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S2957. Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SALL1 MUTATED	1	4	0	3	1
SALL1 WILD-TYPE	36	27	17	18	12

'SALL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S2958. Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SALL1 MUTATED	6	3	0
SALL1 WILD-TYPE	65	24	21

'SALL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 1

Table S2959. Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SALL1 MUTATED	1	0	1	3	2	1	0
SALL1 WILD-TYPE	17	8	9	5	34	24	12

'SALL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S2960. Gene #301: 'SALL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SALL1 MUTATED	0	2	3	3	0	0
SALL1 WILD-TYPE	17	30	10	29	16	7

'DSTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S2961. Gene #302: 'DSTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DSTN MUTATED	2	1	0	0
DSTN WILD-TYPE	17	52	30	24

'DSTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S2962. Gene #302: 'DSTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DSTN MUTATED	2	0	1	0
DSTN WILD-TYPE	33	30	33	26

'DSTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S2963. Gene #302: 'DSTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DSTN MUTATED	2	0	1	0	0
DSTN WILD-TYPE	27	18	12	9	13

'DSTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S2964. Gene #302: 'DSTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DSTN MUTATED	2	0	1	0	0
DSTN WILD-TYPE	30	18	11	10	10

'DSTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2965. Gene #302: 'DSTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DSTN MUTATED	1	0	1	1	0
DSTN WILD-TYPE	25	20	27	24	20

'DSTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2966. Gene #302: 'DSTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DSTN MUTATED	1	2	0
DSTN WILD-TYPE	47	51	18

'DSTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S2967. Gene #302: 'DSTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DSTN MUTATED	1	1	0	0	1
DSTN WILD-TYPE	36	30	17	21	12

'DSTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S2968. Gene #302: 'DSTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DSTN MUTATED	3	0	0
DSTN WILD-TYPE	68	27	21

'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S2969. Gene #302: 'DSTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DSTN MUTATED	1	1	0	0	1	0	0
DSTN WILD-TYPE	17	7	10	8	35	25	12

'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S2970. Gene #302: 'DSTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DSTN MUTATED	2	0	0	1	0	0
DSTN WILD-TYPE	15	32	13	31	16	7

'C6ORF154 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S2971. Gene #303: 'C6ORF154 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C6ORF154 MUTATED	2	2	0	0
C6ORF154 WILD-TYPE	17	51	30	24

'C6ORF154 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S2972. Gene #303: 'C6ORF154 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C6ORF154 MUTATED	1	0	3	0
C6ORF154 WILD-TYPE	34	30	31	26

'C6ORF154 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00766 (Fisher's exact test), Q value = 1

Table S2973. Gene #303: 'C6ORF154 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C6ORF154 MUTATED	0	0	4	0	0
C6ORF154 WILD-TYPE	26	20	24	25	20

Figure S132. Get High-res Image Gene #303: 'C6ORF154 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C6ORF154 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S2974. Gene #303: 'C6ORF154 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C6ORF154 MUTATED	1	3	0
C6ORF154 WILD-TYPE	47	50	18

'C6ORF154 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S2975. Gene #303: 'C6ORF154 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C6ORF154 MUTATED	1	1	0	1	1
C6ORF154 WILD-TYPE	36	30	17	20	12

'C6ORF154 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S2976. Gene #303: 'C6ORF154 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C6ORF154 MUTATED	3	0	1
C6ORF154 WILD-TYPE	68	27	20

'C6ORF154 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S2977. Gene #303: 'C6ORF154 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C6ORF154 MUTATED	0	1	0	0	2	0	1
C6ORF154 WILD-TYPE	18	7	10	8	34	25	11

'C6ORF154 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S2978. Gene #303: 'C6ORF154 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C6ORF154 MUTATED	0	3	0	1	0	0
C6ORF154 WILD-TYPE	17	29	13	31	16	7

'TDRD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S2979. Gene #304: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TDRD6 MUTATED	1	3	3	1
TDRD6 WILD-TYPE	18	50	27	23

'TDRD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S2980. Gene #304: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TDRD6 MUTATED	3	2	2	1
TDRD6 WILD-TYPE	32	28	32	25

'TDRD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S2981. Gene #304: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TDRD6 MUTATED	1	0	2	2	1
TDRD6 WILD-TYPE	28	18	11	7	12

'TDRD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 1

Table S2982. Gene #304: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TDRD6 MUTATED	2	0	0	1	3
TDRD6 WILD-TYPE	30	18	12	9	7

'TDRD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S2983. Gene #304: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TDRD6 MUTATED	1	1	2	3	1
TDRD6 WILD-TYPE	25	19	26	22	19

'TDRD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S2984. Gene #304: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TDRD6 MUTATED	5	1	2
TDRD6 WILD-TYPE	43	52	16

'TDRD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S2985. Gene #304: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TDRD6 MUTATED	3	1	1	2	1
TDRD6 WILD-TYPE	34	30	16	19	12

'TDRD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S2986. Gene #304: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TDRD6 MUTATED	4	2	2
TDRD6 WILD-TYPE	67	25	19

'TDRD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S2987. Gene #304: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TDRD6 MUTATED	1	0	1	0	4	2	0
TDRD6 WILD-TYPE	17	8	9	8	32	23	12

'TDRD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S2988. Gene #304: 'TDRD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TDRD6 MUTATED	1	2	0	3	2	0
TDRD6 WILD-TYPE	16	30	13	29	14	7

'SIGLEC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S2989. Gene #305: 'SIGLEC11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SIGLEC11 MUTATED	2	2	1	0
SIGLEC11 WILD-TYPE	17	51	29	24

'SIGLEC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S2990. Gene #305: 'SIGLEC11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SIGLEC11 MUTATED	0	2	2	1
SIGLEC11 WILD-TYPE	35	28	32	25

'SIGLEC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S2991. Gene #305: 'SIGLEC11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SIGLEC11 MUTATED	2	0	2	0	0
SIGLEC11 WILD-TYPE	27	18	11	9	13

'SIGLEC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S2992. Gene #305: 'SIGLEC11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SIGLEC11 MUTATED	2	0	2	0	0
SIGLEC11 WILD-TYPE	30	18	10	10	10

'SIGLEC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S2993. Gene #305: 'SIGLEC11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SIGLEC11 MUTATED	0	1	2	1	1
SIGLEC11 WILD-TYPE	26	19	26	24	19

'SIGLEC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2994. Gene #305: 'SIGLEC11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SIGLEC11 MUTATED	2	2	1
SIGLEC11 WILD-TYPE	46	51	17

'SIGLEC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S2995. Gene #305: 'SIGLEC11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SIGLEC11 MUTATED	2	2	1	0	0
SIGLEC11 WILD-TYPE	35	29	16	21	13

'SIGLEC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2996. Gene #305: 'SIGLEC11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SIGLEC11 MUTATED	3	1	1
SIGLEC11 WILD-TYPE	68	26	20

'SIGLEC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 1

Table S2997. Gene #305: 'SIGLEC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SIGLEC11 MUTATED	1	2	0	0	0	1	1
SIGLEC11 WILD-TYPE	17	6	10	8	36	24	11

'SIGLEC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S2998. Gene #305: 'SIGLEC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SIGLEC11 MUTATED	2	1	0	1	1	0
SIGLEC11 WILD-TYPE	15	31	13	31	15	7

'UGP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S2999. Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
UGP2 MUTATED	2	1	1	1
UGP2 WILD-TYPE	17	52	29	23

'UGP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S3000. Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
UGP2 MUTATED	3	0	1	1
UGP2 WILD-TYPE	32	30	33	25

'UGP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S3001. Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
UGP2 MUTATED	2	0	0	1	0
UGP2 WILD-TYPE	27	18	13	8	13

'UGP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S3002. Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
UGP2 MUTATED	3	0	0	0	0
UGP2 WILD-TYPE	29	18	12	10	10

'UGP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S3003. Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
UGP2 MUTATED	0	0	1	1	2
UGP2 WILD-TYPE	26	20	27	24	18

'UGP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S3004. Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
UGP2 MUTATED	1	2	1
UGP2 WILD-TYPE	47	51	17

'UGP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S3005. Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
UGP2 MUTATED	1	1	0	1	1
UGP2 WILD-TYPE	36	30	17	20	12

'UGP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S3006. Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
UGP2 MUTATED	3	0	1
UGP2 WILD-TYPE	68	27	20

'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 1

Table S3007. Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
UGP2 MUTATED	0	0	1	2	1	0	0
UGP2 WILD-TYPE	18	8	9	6	35	25	12

Figure S133. Get High-res Image Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S3008. Gene #306: 'UGP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
UGP2 MUTATED	0	1	1	1	1	0
UGP2 WILD-TYPE	17	31	12	31	15	7

'SCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 1

Table S3009. Gene #307: 'SCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SCD MUTATED	0	0	3	1
SCD WILD-TYPE	19	53	27	23

'SCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S3010. Gene #307: 'SCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SCD MUTATED	3	1	0	0
SCD WILD-TYPE	32	29	34	26

'SCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S3011. Gene #307: 'SCD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SCD MUTATED	2	1	0	1	0
SCD WILD-TYPE	24	19	28	24	20

'SCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S3012. Gene #307: 'SCD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SCD MUTATED	1	2	1
SCD WILD-TYPE	47	51	17

'SCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 1

Table S3013. Gene #307: 'SCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SCD MUTATED	0	0	0	3	1
SCD WILD-TYPE	37	31	17	18	12

Figure S134. Get High-res Image Gene #307: 'SCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3014. Gene #307: 'SCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SCD MUTATED	3	1	0
SCD WILD-TYPE	68	26	21

'SCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S3015. Gene #307: 'SCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SCD MUTATED	0	0	1	0	1	0	1
SCD WILD-TYPE	18	8	9	8	35	25	11

'SCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S3016. Gene #307: 'SCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SCD MUTATED	0	0	1	1	0	1
SCD WILD-TYPE	17	32	12	31	16	6

'PANK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S3017. Gene #308: 'PANK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PANK2 MUTATED	0	2	2	0
PANK2 WILD-TYPE	19	51	28	24

'PANK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S3018. Gene #308: 'PANK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PANK2 MUTATED	1	1	2	0
PANK2 WILD-TYPE	34	29	32	26

'PANK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S3019. Gene #308: 'PANK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PANK2 MUTATED	1	1	0	1	1
PANK2 WILD-TYPE	28	17	13	8	12

'PANK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S3020. Gene #308: 'PANK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PANK2 MUTATED	1	1	1	1	0
PANK2 WILD-TYPE	31	17	11	9	10

'PANK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S3021. Gene #308: 'PANK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PANK2 MUTATED	1	0	1	2	0
PANK2 WILD-TYPE	25	20	27	23	20

'PANK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S3022. Gene #308: 'PANK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PANK2 MUTATED	3	1	0
PANK2 WILD-TYPE	45	52	18

'PANK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3023. Gene #308: 'PANK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PANK2 MUTATED	1	1	0	2	0
PANK2 WILD-TYPE	36	30	17	19	13

'PANK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3024. Gene #308: 'PANK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PANK2 MUTATED	3	1	0
PANK2 WILD-TYPE	68	26	21

'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S3025. Gene #308: 'PANK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PANK2 MUTATED	0	0	1	1	2	0	0
PANK2 WILD-TYPE	18	8	9	7	34	25	12

'PANK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S3026. Gene #308: 'PANK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PANK2 MUTATED	0	1	1	2	0	0
PANK2 WILD-TYPE	17	31	12	30	16	7

'GOLGA6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S3027. Gene #309: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GOLGA6B MUTATED	2	2	2	0
GOLGA6B WILD-TYPE	17	51	28	24

'GOLGA6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S3028. Gene #309: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GOLGA6B MUTATED	3	1	2	0
GOLGA6B WILD-TYPE	32	29	32	26

'GOLGA6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S3029. Gene #309: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GOLGA6B MUTATED	1	1	0	2	0
GOLGA6B WILD-TYPE	28	17	13	7	13

'GOLGA6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S3030. Gene #309: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GOLGA6B MUTATED	1	1	0	2	0
GOLGA6B WILD-TYPE	31	17	12	8	10

'GOLGA6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S3031. Gene #309: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GOLGA6B MUTATED	2	1	0	2	1
GOLGA6B WILD-TYPE	24	19	28	23	19

'GOLGA6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3032. Gene #309: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GOLGA6B MUTATED	2	3	1
GOLGA6B WILD-TYPE	46	50	17

'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S3033. Gene #309: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GOLGA6B MUTATED	2	1	0	3	0
GOLGA6B WILD-TYPE	35	30	17	18	13

'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3034. Gene #309: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GOLGA6B MUTATED	4	1	1
GOLGA6B WILD-TYPE	67	26	20

'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S3035. Gene #309: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GOLGA6B MUTATED	0	0	1	1	3	0	1
GOLGA6B WILD-TYPE	18	8	9	7	33	25	11

'GOLGA6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S3036. Gene #309: 'GOLGA6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GOLGA6B MUTATED	0	1	2	2	0	1
GOLGA6B WILD-TYPE	17	31	11	30	16	6

'MKI67 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S3037. Gene #310: 'MKI67 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MKI67 MUTATED	0	2	4	3
MKI67 WILD-TYPE	19	51	26	21

'MKI67 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S3038. Gene #310: 'MKI67 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MKI67 MUTATED	3	4	1	1
MKI67 WILD-TYPE	32	26	33	25

'MKI67 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S3039. Gene #310: 'MKI67 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MKI67 MUTATED	1	1	1	1	1
MKI67 WILD-TYPE	28	17	12	8	12

'MKI67 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S3040. Gene #310: 'MKI67 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MKI67 MUTATED	2	1	0	0	2
MKI67 WILD-TYPE	30	17	12	10	8

'MKI67 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S3041. Gene #310: 'MKI67 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MKI67 MUTATED	2	2	1	3	0
MKI67 WILD-TYPE	24	18	27	22	20

'MKI67 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S3042. Gene #310: 'MKI67 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MKI67 MUTATED	4	2	2
MKI67 WILD-TYPE	44	51	16

'MKI67 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S3043. Gene #310: 'MKI67 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MKI67 MUTATED	2	0	2	3	1
MKI67 WILD-TYPE	35	31	15	18	12

'MKI67 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S3044. Gene #310: 'MKI67 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MKI67 MUTATED	4	2	2
MKI67 WILD-TYPE	67	25	19

'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S3045. Gene #310: 'MKI67 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MKI67 MUTATED	0	0	1	0	4	1	1
MKI67 WILD-TYPE	18	8	9	8	32	24	11

'MKI67 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S3046. Gene #310: 'MKI67 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MKI67 MUTATED	0	2	0	3	1	1
MKI67 WILD-TYPE	17	30	13	29	15	6

'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S3047. Gene #311: 'STK19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
STK19 MUTATED	0	2	2	0
STK19 WILD-TYPE	19	51	28	24

'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S3048. Gene #311: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
STK19 MUTATED	0	1	2	1
STK19 WILD-TYPE	35	29	32	25

'STK19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S3049. Gene #311: 'STK19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
STK19 MUTATED	0	1	0	0	2
STK19 WILD-TYPE	29	17	13	9	11

'STK19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S3050. Gene #311: 'STK19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
STK19 MUTATED	0	1	1	0	1
STK19 WILD-TYPE	32	17	11	10	9

'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S3051. Gene #311: 'STK19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
STK19 MUTATED	0	0	2	1	1
STK19 WILD-TYPE	26	20	26	24	19

'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S3052. Gene #311: 'STK19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
STK19 MUTATED	2	1	1
STK19 WILD-TYPE	46	52	17

'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S3053. Gene #311: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
STK19 MUTATED	1	2	1	0	0
STK19 WILD-TYPE	36	29	16	21	13

'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S3054. Gene #311: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
STK19 MUTATED	2	1	1
STK19 WILD-TYPE	69	26	20

'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S3055. Gene #311: 'STK19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
STK19 MUTATED	1	0	0	0	1	2	0
STK19 WILD-TYPE	17	8	10	8	35	23	12

'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S3056. Gene #311: 'STK19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
STK19 MUTATED	0	2	0	1	1	0
STK19 WILD-TYPE	17	30	13	31	15	7

'SPANXN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S3057. Gene #312: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SPANXN3 MUTATED	1	4	0	0
SPANXN3 WILD-TYPE	18	49	30	24

'SPANXN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S3058. Gene #312: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SPANXN3 MUTATED	1	1	3	0
SPANXN3 WILD-TYPE	34	29	31	26

'SPANXN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S3059. Gene #312: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SPANXN3 MUTATED	2	1	1	1	0
SPANXN3 WILD-TYPE	24	19	27	24	20

'SPANXN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S3060. Gene #312: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SPANXN3 MUTATED	3	2	0
SPANXN3 WILD-TYPE	45	51	18

'SPANXN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S3061. Gene #312: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SPANXN3 MUTATED	4	0	0	1	0
SPANXN3 WILD-TYPE	33	31	17	20	13

'SPANXN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S3062. Gene #312: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SPANXN3 MUTATED	4	1	0
SPANXN3 WILD-TYPE	67	26	21

'SPANXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S3063. Gene #312: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SPANXN3 MUTATED	2	1	0	0	1	1	0
SPANXN3 WILD-TYPE	16	7	10	8	35	24	12

'SPANXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S3064. Gene #312: 'SPANXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SPANXN3 MUTATED	2	0	1	2	0	0
SPANXN3 WILD-TYPE	15	32	12	30	16	7

'RTEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00536 (Fisher's exact test), Q value = 1

Table S3065. Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RTEL1 MUTATED	3	0	3	0
RTEL1 WILD-TYPE	16	53	27	24

Figure S135. Get High-res Image Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RTEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S3066. Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RTEL1 MUTATED	4	0	2	0
RTEL1 WILD-TYPE	31	30	32	26

'RTEL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S3067. Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RTEL1 MUTATED	1	2	0	1	0
RTEL1 WILD-TYPE	28	16	13	8	13

'RTEL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S3068. Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RTEL1 MUTATED	3	1	0	0	0
RTEL1 WILD-TYPE	29	17	12	10	10

'RTEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S3069. Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RTEL1 MUTATED	3	0	1	1	1
RTEL1 WILD-TYPE	23	20	27	24	19

'RTEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S3070. Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RTEL1 MUTATED	1	4	1
RTEL1 WILD-TYPE	47	49	17

'RTEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S3071. Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RTEL1 MUTATED	3	2	0	1	0
RTEL1 WILD-TYPE	34	29	17	20	13

'RTEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S3072. Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RTEL1 MUTATED	5	0	1
RTEL1 WILD-TYPE	66	27	20

'RTEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S3073. Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RTEL1 MUTATED	0	1	1	1	2	1	0
RTEL1 WILD-TYPE	18	7	9	7	34	24	12

'RTEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S3074. Gene #313: 'RTEL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RTEL1 MUTATED	0	3	1	1	1	0
RTEL1 WILD-TYPE	17	29	12	31	15	7

'NWD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S3075. Gene #314: 'NWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NWD1 MUTATED	1	2	3	2
NWD1 WILD-TYPE	18	51	27	22

'NWD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S3076. Gene #314: 'NWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NWD1 MUTATED	2	1	3	2
NWD1 WILD-TYPE	33	29	31	24

'NWD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S3077. Gene #314: 'NWD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NWD1 MUTATED	3	0	1	1	1
NWD1 WILD-TYPE	26	18	12	8	12

'NWD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S3078. Gene #314: 'NWD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NWD1 MUTATED	4	0	0	0	2
NWD1 WILD-TYPE	28	18	12	10	8

'NWD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S3079. Gene #314: 'NWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NWD1 MUTATED	1	1	2	2	2
NWD1 WILD-TYPE	25	19	26	23	18

'NWD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3080. Gene #314: 'NWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NWD1 MUTATED	3	4	1
NWD1 WILD-TYPE	45	49	17

'NWD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S3081. Gene #314: 'NWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NWD1 MUTATED	2	3	2	1	0
NWD1 WILD-TYPE	35	28	15	20	13

'NWD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3082. Gene #314: 'NWD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NWD1 MUTATED	5	2	1
NWD1 WILD-TYPE	66	25	20

'NWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S3083. Gene #314: 'NWD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NWD1 MUTATED	1	1	1	0	1	4	0
NWD1 WILD-TYPE	17	7	9	8	35	21	12

'NWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S3084. Gene #314: 'NWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NWD1 MUTATED	0	2	1	3	2	0
NWD1 WILD-TYPE	17	30	12	29	14	7

'NBPF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S3085. Gene #315: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NBPF1 MUTATED	0	2	1	2
NBPF1 WILD-TYPE	19	51	29	22

'NBPF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3086. Gene #315: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NBPF1 MUTATED	2	1	1	1
NBPF1 WILD-TYPE	33	29	33	25

'NBPF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S3087. Gene #315: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NBPF1 MUTATED	1	0	1	1	0
NBPF1 WILD-TYPE	28	18	12	8	13

'NBPF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S3088. Gene #315: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NBPF1 MUTATED	3	0	0	0	0
NBPF1 WILD-TYPE	29	18	12	10	10

'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S3089. Gene #315: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NBPF1 MUTATED	1	1	0	2	1
NBPF1 WILD-TYPE	25	19	28	23	19

'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S3090. Gene #315: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NBPF1 MUTATED	3	2	0
NBPF1 WILD-TYPE	45	51	18

'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S3091. Gene #315: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NBPF1 MUTATED	1	1	1	1	1
NBPF1 WILD-TYPE	36	30	16	20	12

'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3092. Gene #315: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NBPF1 MUTATED	3	1	1
NBPF1 WILD-TYPE	68	26	20

'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S3093. Gene #315: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NBPF1 MUTATED	1	0	1	0	1	2	0
NBPF1 WILD-TYPE	17	8	9	8	35	23	12

'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S3094. Gene #315: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NBPF1 MUTATED	1	0	1	2	1	0
NBPF1 WILD-TYPE	16	32	12	30	15	7

'PPP1R10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S3095. Gene #316: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PPP1R10 MUTATED	1	1	1	1
PPP1R10 WILD-TYPE	18	52	29	23

'PPP1R10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S3096. Gene #316: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PPP1R10 MUTATED	2	1	1	0
PPP1R10 WILD-TYPE	33	29	33	26

'PPP1R10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S3097. Gene #316: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PPP1R10 MUTATED	0	1	1	1	1
PPP1R10 WILD-TYPE	26	19	27	24	19

'PPP1R10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S3098. Gene #316: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PPP1R10 MUTATED	2	1	1
PPP1R10 WILD-TYPE	46	52	17

'PPP1R10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S3099. Gene #316: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PPP1R10 MUTATED	0	1	0	2	1
PPP1R10 WILD-TYPE	37	30	17	19	12

'PPP1R10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3100. Gene #316: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PPP1R10 MUTATED	3	1	0
PPP1R10 WILD-TYPE	68	26	21

'PPP1R10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S3101. Gene #316: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PPP1R10 MUTATED	1	0	0	1	1	0	1
PPP1R10 WILD-TYPE	17	8	10	7	35	25	11

'PPP1R10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S3102. Gene #316: 'PPP1R10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PPP1R10 MUTATED	0	1	1	1	0	1
PPP1R10 WILD-TYPE	17	31	12	31	16	6

'DDX50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S3103. Gene #317: 'DDX50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DDX50 MUTATED	1	1	2	1
DDX50 WILD-TYPE	18	52	28	23

'DDX50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S3104. Gene #317: 'DDX50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DDX50 MUTATED	1	1	3	0
DDX50 WILD-TYPE	34	29	31	26

'DDX50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S3105. Gene #317: 'DDX50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DDX50 MUTATED	1	1	1	1	1
DDX50 WILD-TYPE	28	17	12	8	12

'DDX50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 1

Table S3106. Gene #317: 'DDX50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DDX50 MUTATED	2	1	2	0	0
DDX50 WILD-TYPE	30	17	10	10	10

'DDX50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S3107. Gene #317: 'DDX50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DDX50 MUTATED	0	1	2	2	0
DDX50 WILD-TYPE	26	19	26	23	20

'DDX50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S3108. Gene #317: 'DDX50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DDX50 MUTATED	2	3	0
DDX50 WILD-TYPE	46	50	18

'DDX50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S3109. Gene #317: 'DDX50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DDX50 MUTATED	1	3	0	1	0
DDX50 WILD-TYPE	36	28	17	20	13

'DDX50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S3110. Gene #317: 'DDX50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DDX50 MUTATED	4	1	0
DDX50 WILD-TYPE	67	26	21

'DDX50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 1

Table S3111. Gene #317: 'DDX50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DDX50 MUTATED	0	1	1	0	0	3	0
DDX50 WILD-TYPE	18	7	9	8	36	22	12

'DDX50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S3112. Gene #317: 'DDX50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DDX50 MUTATED	1	2	0	2	0	0
DDX50 WILD-TYPE	16	30	13	30	16	7

'HOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S3113. Gene #318: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HOXA1 MUTATED	1	1	2	0
HOXA1 WILD-TYPE	18	52	28	24

'HOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S3114. Gene #318: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HOXA1 MUTATED	1	2	1	0
HOXA1 WILD-TYPE	34	28	33	26

'HOXA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S3115. Gene #318: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HOXA1 MUTATED	2	0	0	1	0
HOXA1 WILD-TYPE	27	18	13	8	13

'HOXA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3116. Gene #318: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HOXA1 MUTATED	3	0	0	0	0
HOXA1 WILD-TYPE	29	18	12	10	10

'HOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S3117. Gene #318: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HOXA1 MUTATED	0	1	1	2	0
HOXA1 WILD-TYPE	26	19	27	23	20

'HOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S3118. Gene #318: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HOXA1 MUTATED	2	1	1
HOXA1 WILD-TYPE	46	52	17

'HOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 1

Table S3119. Gene #318: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HOXA1 MUTATED	1	0	0	3	0
HOXA1 WILD-TYPE	36	31	17	18	13

'HOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S3120. Gene #318: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HOXA1 MUTATED	2	1	1
HOXA1 WILD-TYPE	69	26	20

'HOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S3121. Gene #318: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HOXA1 MUTATED	1	0	1	0	1	0	1
HOXA1 WILD-TYPE	17	8	9	8	35	25	11

'HOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S3122. Gene #318: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HOXA1 MUTATED	0	1	0	2	0	1
HOXA1 WILD-TYPE	17	31	13	30	16	6

'SLC4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S3123. Gene #319: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC4A3 MUTATED	0	5	1	0
SLC4A3 WILD-TYPE	19	48	29	24

'SLC4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S3124. Gene #319: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC4A3 MUTATED	4	1	1	0
SLC4A3 WILD-TYPE	31	29	33	26

'SLC4A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S3125. Gene #319: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLC4A3 MUTATED	2	0	1	2	0
SLC4A3 WILD-TYPE	27	18	12	7	13

'SLC4A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S3126. Gene #319: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLC4A3 MUTATED	3	0	1	1	0
SLC4A3 WILD-TYPE	29	18	11	9	10

'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S3127. Gene #319: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC4A3 MUTATED	0	2	1	3	0
SLC4A3 WILD-TYPE	26	18	27	22	20

'SLC4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S3128. Gene #319: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC4A3 MUTATED	4	2	0
SLC4A3 WILD-TYPE	44	51	18

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 1

Table S3129. Gene #319: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC4A3 MUTATED	1	0	3	1	1
SLC4A3 WILD-TYPE	36	31	14	20	12

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S3130. Gene #319: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC4A3 MUTATED	3	2	1
SLC4A3 WILD-TYPE	68	25	20

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S3131. Gene #319: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC4A3 MUTATED	1	1	2	0	1	1	0
SLC4A3 WILD-TYPE	17	7	8	8	35	24	12

'SLC4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S3132. Gene #319: 'SLC4A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC4A3 MUTATED	1	0	0	4	1	0
SLC4A3 WILD-TYPE	16	32	13	28	15	7

'XPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S3133. Gene #320: 'XPA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
XPA MUTATED	1	2	0	0
XPA WILD-TYPE	18	51	30	24

'XPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S3134. Gene #320: 'XPA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
XPA MUTATED	1	2	0	0
XPA WILD-TYPE	34	28	34	26

'FADS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S3135. Gene #321: 'FADS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FADS2 MUTATED	2	1	1	0
FADS2 WILD-TYPE	17	52	29	24

'FADS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S3136. Gene #321: 'FADS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FADS2 MUTATED	0	1	2	1
FADS2 WILD-TYPE	35	29	32	25

'FADS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S3137. Gene #321: 'FADS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FADS2 MUTATED	0	1	1	0	1
FADS2 WILD-TYPE	29	17	12	9	12

'FADS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S3138. Gene #321: 'FADS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FADS2 MUTATED	0	1	1	0	1
FADS2 WILD-TYPE	32	17	11	10	9

'FADS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S3139. Gene #321: 'FADS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FADS2 MUTATED	1	0	1	0	1
FADS2 WILD-TYPE	25	20	27	25	19

'FADS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3140. Gene #321: 'FADS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FADS2 MUTATED	1	2	0
FADS2 WILD-TYPE	47	51	18

'FADS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S3141. Gene #321: 'FADS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FADS2 MUTATED	2	1	0	0	0
FADS2 WILD-TYPE	35	30	17	21	13

'FADS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S3142. Gene #321: 'FADS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FADS2 MUTATED	3	0	0
FADS2 WILD-TYPE	68	27	21

'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S3143. Gene #321: 'FADS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FADS2 MUTATED	0	1	0	0	1	1	0
FADS2 WILD-TYPE	18	7	10	8	35	24	12

'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S3144. Gene #321: 'FADS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FADS2 MUTATED	0	2	0	0	1	0
FADS2 WILD-TYPE	17	30	13	32	15	7

'SYT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 1

Table S3145. Gene #322: 'SYT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SYT2 MUTATED	2	0	1	1
SYT2 WILD-TYPE	17	53	29	23

'SYT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S3146. Gene #322: 'SYT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SYT2 MUTATED	2	0	2	0
SYT2 WILD-TYPE	33	30	32	26

'SYT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S3147. Gene #322: 'SYT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SYT2 MUTATED	1	0	2	1	0
SYT2 WILD-TYPE	25	20	26	24	20

'SYT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S3148. Gene #322: 'SYT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SYT2 MUTATED	1	2	1
SYT2 WILD-TYPE	47	51	17

'SYT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S3149. Gene #322: 'SYT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SYT2 MUTATED	3	1	0	0	0
SYT2 WILD-TYPE	34	30	17	21	13

'SYT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S3150. Gene #322: 'SYT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SYT2 MUTATED	3	0	1
SYT2 WILD-TYPE	68	27	20

'SYT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S3151. Gene #322: 'SYT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SYT2 MUTATED	0	0	0	0	2	2	0
SYT2 WILD-TYPE	18	8	10	8	34	23	12

'SYT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S3152. Gene #322: 'SYT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SYT2 MUTATED	0	2	0	1	1	0
SYT2 WILD-TYPE	17	30	13	31	15	7

'RBM33 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3153. Gene #323: 'RBM33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RBM33 MUTATED	1	3	1	1
RBM33 WILD-TYPE	18	50	29	23

'RBM33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3154. Gene #323: 'RBM33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RBM33 MUTATED	2	1	2	1
RBM33 WILD-TYPE	33	29	32	25

'RBM33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3155. Gene #323: 'RBM33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RBM33 MUTATED	0	0	3	2	1
RBM33 WILD-TYPE	26	20	25	23	19

'RBM33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3156. Gene #323: 'RBM33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RBM33 MUTATED	2	4	0
RBM33 WILD-TYPE	46	49	18

'RBM33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S3157. Gene #323: 'RBM33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RBM33 MUTATED	3	1	1	1	0
RBM33 WILD-TYPE	34	30	16	20	13

'RBM33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S3158. Gene #323: 'RBM33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RBM33 MUTATED	5	1	0
RBM33 WILD-TYPE	66	26	21

'RBM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S3159. Gene #323: 'RBM33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RBM33 MUTATED	1	1	1	1	2	0	0
RBM33 WILD-TYPE	17	7	9	7	34	25	12

'RBM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S3160. Gene #323: 'RBM33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RBM33 MUTATED	0	3	1	2	0	0
RBM33 WILD-TYPE	17	29	12	30	16	7

'ESD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S3161. Gene #324: 'ESD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ESD MUTATED	0	1	3	1
ESD WILD-TYPE	19	52	27	23

'ESD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S3162. Gene #324: 'ESD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ESD MUTATED	1	2	2	0
ESD WILD-TYPE	34	28	32	26

'ESD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S3163. Gene #324: 'ESD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ESD MUTATED	0	0	1	1	1
ESD WILD-TYPE	29	18	12	8	12

'ESD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S3164. Gene #324: 'ESD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ESD MUTATED	2	0	0	0	1
ESD WILD-TYPE	30	18	12	10	9

'ESD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S3165. Gene #324: 'ESD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ESD MUTATED	0	2	2	1	0
ESD WILD-TYPE	26	18	26	24	20

'ESD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S3166. Gene #324: 'ESD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ESD MUTATED	1	2	2
ESD WILD-TYPE	47	51	16

'ESD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S3167. Gene #324: 'ESD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ESD MUTATED	1	1	0	3	0
ESD WILD-TYPE	36	30	17	18	13

'ESD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S3168. Gene #324: 'ESD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ESD MUTATED	3	0	2
ESD WILD-TYPE	68	27	19

'ESD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S3169. Gene #324: 'ESD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ESD MUTATED	0	0	1	0	1	1	2
ESD WILD-TYPE	18	8	9	8	35	24	10

'ESD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0841 (Fisher's exact test), Q value = 1

Table S3170. Gene #324: 'ESD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ESD MUTATED	0	2	0	1	0	2
ESD WILD-TYPE	17	30	13	31	16	5

'RANBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S3171. Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RANBP2 MUTATED	4	5	4	1
RANBP2 WILD-TYPE	15	48	26	23

'RANBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S3172. Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RANBP2 MUTATED	5	3	5	1
RANBP2 WILD-TYPE	30	27	29	25

'RANBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S3173. Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RANBP2 MUTATED	3	2	0	3	1
RANBP2 WILD-TYPE	26	16	13	6	12

'RANBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S3174. Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RANBP2 MUTATED	3	2	1	3	0
RANBP2 WILD-TYPE	29	16	11	7	10

'RANBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0278 (Fisher's exact test), Q value = 1

Table S3175. Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RANBP2 MUTATED	3	0	5	6	0
RANBP2 WILD-TYPE	23	20	23	19	20

Figure S136. Get High-res Image Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RANBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S3176. Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RANBP2 MUTATED	7	6	1
RANBP2 WILD-TYPE	41	47	17

'RANBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0883 (Fisher's exact test), Q value = 1

Table S3177. Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RANBP2 MUTATED	3	2	4	5	0
RANBP2 WILD-TYPE	34	29	13	16	13

'RANBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S3178. Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RANBP2 MUTATED	9	4	1
RANBP2 WILD-TYPE	62	23	20

'RANBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S3179. Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RANBP2 MUTATED	2	2	2	0	6	1	0
RANBP2 WILD-TYPE	16	6	8	8	30	24	12

'RANBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S3180. Gene #325: 'RANBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RANBP2 MUTATED	2	3	1	6	1	0
RANBP2 WILD-TYPE	15	29	12	26	15	7

'ABCB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S3181. Gene #326: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ABCB4 MUTATED	2	1	2	0
ABCB4 WILD-TYPE	17	52	28	24

'ABCB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S3182. Gene #326: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ABCB4 MUTATED	3	0	0	1
ABCB4 WILD-TYPE	32	30	34	25

'ABCB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S3183. Gene #326: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ABCB4 MUTATED	0	2	1	0	0
ABCB4 WILD-TYPE	29	16	12	9	13

'ABCB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S3184. Gene #326: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ABCB4 MUTATED	0	2	1	0	0
ABCB4 WILD-TYPE	32	16	11	10	10

'ABCB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S3185. Gene #326: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ABCB4 MUTATED	1	1	0	0	2
ABCB4 WILD-TYPE	25	19	28	25	18

'ABCB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S3186. Gene #326: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ABCB4 MUTATED	0	3	1
ABCB4 WILD-TYPE	48	50	17

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S3187. Gene #326: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ABCB4 MUTATED	1	2	0	0	1
ABCB4 WILD-TYPE	36	29	17	21	12

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S3188. Gene #326: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ABCB4 MUTATED	3	0	1
ABCB4 WILD-TYPE	68	27	20

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 1

Table S3189. Gene #326: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ABCB4 MUTATED	0	0	0	2	1	0	1
ABCB4 WILD-TYPE	18	8	10	6	35	25	11

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0518 (Fisher's exact test), Q value = 1

Table S3190. Gene #326: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ABCB4 MUTATED	1	0	2	0	1	0
ABCB4 WILD-TYPE	16	32	11	32	15	7

'FHL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S3191. Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FHL3 MUTATED	0	2	2	0
FHL3 WILD-TYPE	19	51	28	24

'FHL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S3192. Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FHL3 MUTATED	2	0	1	1
FHL3 WILD-TYPE	33	30	33	25

'FHL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 1

Table S3193. Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FHL3 MUTATED	0	1	0	2	0
FHL3 WILD-TYPE	29	17	13	7	13

Figure S137. Get High-res Image Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FHL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S3194. Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FHL3 MUTATED	1	1	0	1	0
FHL3 WILD-TYPE	31	17	12	9	10

'FHL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S3195. Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FHL3 MUTATED	0	0	1	2	1
FHL3 WILD-TYPE	26	20	27	23	19

'FHL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3196. Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FHL3 MUTATED	2	2	0
FHL3 WILD-TYPE	46	51	18

'FHL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S3197. Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FHL3 MUTATED	1	2	0	1	0
FHL3 WILD-TYPE	36	29	17	20	13

'FHL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3198. Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FHL3 MUTATED	3	1	0
FHL3 WILD-TYPE	68	26	21

'FHL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S3199. Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FHL3 MUTATED	0	0	1	1	1	1	0
FHL3 WILD-TYPE	18	8	9	7	35	24	12

'FHL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S3200. Gene #327: 'FHL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FHL3 MUTATED	0	1	1	2	0	0
FHL3 WILD-TYPE	17	31	12	30	16	7

'NAP1L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S3201. Gene #328: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NAP1L3 MUTATED	1	2	1	0
NAP1L3 WILD-TYPE	18	51	29	24

'NAP1L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S3202. Gene #328: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NAP1L3 MUTATED	0	1	2	1
NAP1L3 WILD-TYPE	35	29	32	25

'NAP1L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S3203. Gene #328: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NAP1L3 MUTATED	0	1	0	0	2
NAP1L3 WILD-TYPE	29	17	13	9	11

'NAP1L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S3204. Gene #328: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NAP1L3 MUTATED	0	1	1	0	1
NAP1L3 WILD-TYPE	32	17	11	10	9

'NAP1L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S3205. Gene #328: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NAP1L3 MUTATED	1	0	1	2	0
NAP1L3 WILD-TYPE	25	20	27	23	20

'NAP1L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3206. Gene #328: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NAP1L3 MUTATED	2	2	0
NAP1L3 WILD-TYPE	46	51	18

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S3207. Gene #328: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NAP1L3 MUTATED	2	1	1	0	0
NAP1L3 WILD-TYPE	35	30	16	21	13

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S3208. Gene #328: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NAP1L3 MUTATED	2	2	0
NAP1L3 WILD-TYPE	69	25	21

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S3209. Gene #328: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NAP1L3 MUTATED	1	0	1	0	2	0	0
NAP1L3 WILD-TYPE	17	8	9	8	34	25	12

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S3210. Gene #328: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NAP1L3 MUTATED	0	2	0	2	0	0
NAP1L3 WILD-TYPE	17	30	13	30	16	7

'GNAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S3211. Gene #329: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GNAS MUTATED	2	2	4	1
GNAS WILD-TYPE	17	51	26	23

'GNAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S3212. Gene #329: 'GNAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GNAS MUTATED	5	1	1	2
GNAS WILD-TYPE	30	29	33	24

'GNAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S3213. Gene #329: 'GNAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GNAS MUTATED	2	2	0	1	2
GNAS WILD-TYPE	27	16	13	8	11

'GNAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S3214. Gene #329: 'GNAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GNAS MUTATED	3	1	1	2	0
GNAS WILD-TYPE	29	17	11	8	10

'GNAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S3215. Gene #329: 'GNAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GNAS MUTATED	4	0	2	2	1
GNAS WILD-TYPE	22	20	26	23	19

'GNAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3216. Gene #329: 'GNAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GNAS MUTATED	4	4	1
GNAS WILD-TYPE	44	49	17

'GNAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S3217. Gene #329: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GNAS MUTATED	3	2	0	4	0
GNAS WILD-TYPE	34	29	17	17	13

'GNAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S3218. Gene #329: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GNAS MUTATED	8	1	0
GNAS WILD-TYPE	63	26	21

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S3219. Gene #329: 'GNAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GNAS MUTATED	1	2	1	0	3	1	1
GNAS WILD-TYPE	17	6	9	8	33	24	11

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S3220. Gene #329: 'GNAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GNAS MUTATED	3	2	2	2	0	0
GNAS WILD-TYPE	14	30	11	30	16	7

'PARP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S3221. Gene #330: 'PARP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PARP14 MUTATED	0	2	2	1
PARP14 WILD-TYPE	19	51	28	23

'PARP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S3222. Gene #330: 'PARP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PARP14 MUTATED	1	1	2	1
PARP14 WILD-TYPE	34	29	32	25

'PARP14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S3223. Gene #330: 'PARP14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PARP14 MUTATED	1	1	1	1	0
PARP14 WILD-TYPE	28	17	12	8	13

'PARP14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3224. Gene #330: 'PARP14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PARP14 MUTATED	2	1	1	0	0
PARP14 WILD-TYPE	30	17	11	10	10

'PARP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S3225. Gene #330: 'PARP14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PARP14 MUTATED	0	1	2	2	0
PARP14 WILD-TYPE	26	19	26	23	20

'PARP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S3226. Gene #330: 'PARP14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PARP14 MUTATED	3	1	1
PARP14 WILD-TYPE	45	52	17

'PARP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S3227. Gene #330: 'PARP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PARP14 MUTATED	2	0	1	1	1
PARP14 WILD-TYPE	35	31	16	20	12

'PARP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3228. Gene #330: 'PARP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PARP14 MUTATED	3	1	1
PARP14 WILD-TYPE	68	26	20

'PARP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S3229. Gene #330: 'PARP14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PARP14 MUTATED	1	1	1	0	1	1	0
PARP14 WILD-TYPE	17	7	9	8	35	24	12

'PARP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S3230. Gene #330: 'PARP14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PARP14 MUTATED	1	0	0	3	1	0
PARP14 WILD-TYPE	16	32	13	29	15	7

'SLCO1B3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S3231. Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLCO1B3 MUTATED	1	1	4	1
SLCO1B3 WILD-TYPE	18	52	26	23

'SLCO1B3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 1

Table S3232. Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLCO1B3 MUTATED	2	1	0	4
SLCO1B3 WILD-TYPE	33	29	34	22

'SLCO1B3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S3233. Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLCO1B3 MUTATED	2	1	0	1	2
SLCO1B3 WILD-TYPE	27	17	13	8	11

'SLCO1B3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S3234. Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLCO1B3 MUTATED	4	1	0	0	1
SLCO1B3 WILD-TYPE	28	17	12	10	9

'SLCO1B3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.098 (Fisher's exact test), Q value = 1

Table S3235. Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLCO1B3 MUTATED	0	2	0	3	2
SLCO1B3 WILD-TYPE	26	18	28	22	18

'SLCO1B3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 1

Table S3236. Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLCO1B3 MUTATED	5	0	2
SLCO1B3 WILD-TYPE	43	53	16

Figure S138. Get High-res Image Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S3237. Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLCO1B3 MUTATED	0	3	1	1	2
SLCO1B3 WILD-TYPE	37	28	16	20	11

'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S3238. Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLCO1B3 MUTATED	3	2	2
SLCO1B3 WILD-TYPE	68	25	19

'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S3239. Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLCO1B3 MUTATED	1	0	2	0	0	3	1
SLCO1B3 WILD-TYPE	17	8	8	8	36	22	11

'SLCO1B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S3240. Gene #331: 'SLCO1B3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLCO1B3 MUTATED	1	0	0	3	3	0
SLCO1B3 WILD-TYPE	16	32	13	29	13	7

'BCL9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S3241. Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BCL9L MUTATED	2	1	3	1
BCL9L WILD-TYPE	17	52	27	23

'BCL9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S3242. Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BCL9L MUTATED	3	1	1	2
BCL9L WILD-TYPE	32	29	33	24

'BCL9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S3243. Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BCL9L MUTATED	1	0	1	1	0
BCL9L WILD-TYPE	28	18	12	8	13

'BCL9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S3244. Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BCL9L MUTATED	2	0	0	0	1
BCL9L WILD-TYPE	30	18	12	10	9

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S3245. Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BCL9L MUTATED	1	2	1	2	1
BCL9L WILD-TYPE	25	18	27	23	19

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S3246. Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BCL9L MUTATED	2	4	1
BCL9L WILD-TYPE	46	49	17

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S3247. Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BCL9L MUTATED	2	1	0	3	1
BCL9L WILD-TYPE	35	30	17	18	12

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S3248. Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BCL9L MUTATED	6	0	1
BCL9L WILD-TYPE	65	27	20

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 1

Table S3249. Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BCL9L MUTATED	0	1	2	0	0	3	0
BCL9L WILD-TYPE	18	7	8	8	36	22	12

Figure S139. Get High-res Image Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S3250. Gene #332: 'BCL9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BCL9L MUTATED	1	1	1	2	1	0
BCL9L WILD-TYPE	16	31	12	30	15	7

'ZNF428 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S3251. Gene #333: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF428 MUTATED	0	1	0	2
ZNF428 WILD-TYPE	19	52	30	22

'ZNF428 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S3252. Gene #333: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF428 MUTATED	0	0	2	1
ZNF428 WILD-TYPE	35	30	32	25

'ARFGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S3253. Gene #334: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ARFGAP3 MUTATED	0	2	2	0
ARFGAP3 WILD-TYPE	19	51	28	24

'ARFGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S3254. Gene #334: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ARFGAP3 MUTATED	2	2	0	0
ARFGAP3 WILD-TYPE	33	28	34	26

'ARFGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 1

Table S3255. Gene #334: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ARFGAP3 MUTATED	0	2	0	2	0
ARFGAP3 WILD-TYPE	26	18	28	23	20

'ARFGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S3256. Gene #334: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ARFGAP3 MUTATED	2	1	1
ARFGAP3 WILD-TYPE	46	52	17

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00749 (Fisher's exact test), Q value = 1

Table S3257. Gene #334: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ARFGAP3 MUTATED	0	0	2	0	2
ARFGAP3 WILD-TYPE	37	31	15	21	11

Figure S140. Get High-res Image Gene #334: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 1

Table S3258. Gene #334: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ARFGAP3 MUTATED	0	2	2
ARFGAP3 WILD-TYPE	71	25	19

Figure S141. Get High-res Image Gene #334: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S3259. Gene #334: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ARFGAP3 MUTATED	1	0	1	0	0	2	0
ARFGAP3 WILD-TYPE	17	8	9	8	36	23	12

'ARFGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S3260. Gene #334: 'ARFGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ARFGAP3 MUTATED	0	0	0	2	2	0
ARFGAP3 WILD-TYPE	17	32	13	30	14	7

'SALL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S3261. Gene #335: 'SALL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SALL2 MUTATED	0	3	1	1
SALL2 WILD-TYPE	19	50	29	23

'SALL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S3262. Gene #335: 'SALL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SALL2 MUTATED	1	2	2	0
SALL2 WILD-TYPE	34	28	32	26

'SALL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3263. Gene #335: 'SALL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SALL2 MUTATED	2	1	0	0	0
SALL2 WILD-TYPE	27	17	13	9	13

'SALL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S3264. Gene #335: 'SALL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SALL2 MUTATED	1	1	0	1	0
SALL2 WILD-TYPE	31	17	12	9	10

'SALL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S3265. Gene #335: 'SALL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SALL2 MUTATED	2	2	0	1	0
SALL2 WILD-TYPE	24	18	28	24	20

'SALL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S3266. Gene #335: 'SALL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SALL2 MUTATED	1	3	1
SALL2 WILD-TYPE	47	50	17

'SALL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S3267. Gene #335: 'SALL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SALL2 MUTATED	2	0	1	1	1
SALL2 WILD-TYPE	35	31	16	20	12

'SALL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S3268. Gene #335: 'SALL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SALL2 MUTATED	3	2	0
SALL2 WILD-TYPE	68	25	21

'SALL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S3269. Gene #335: 'SALL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SALL2 MUTATED	1	0	0	0	1	2	1
SALL2 WILD-TYPE	17	8	10	8	35	23	11

'SALL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S3270. Gene #335: 'SALL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SALL2 MUTATED	0	2	1	1	0	1
SALL2 WILD-TYPE	17	30	12	31	16	6

'BMP2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S3271. Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BMP2K MUTATED	0	3	2	0
BMP2K WILD-TYPE	19	50	28	24

'BMP2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S3272. Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BMP2K MUTATED	3	0	1	1
BMP2K WILD-TYPE	32	30	33	25

'BMP2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 1

Table S3273. Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BMP2K MUTATED	0	2	0	2	0
BMP2K WILD-TYPE	29	16	13	7	13

Figure S142. Get High-res Image Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BMP2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S3274. Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BMP2K MUTATED	2	1	0	1	0
BMP2K WILD-TYPE	30	17	12	9	10

'BMP2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S3275. Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BMP2K MUTATED	1	0	2	2	0
BMP2K WILD-TYPE	25	20	26	23	20

'BMP2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S3276. Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BMP2K MUTATED	2	3	0
BMP2K WILD-TYPE	46	50	18

'BMP2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S3277. Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BMP2K MUTATED	1	1	1	2	0
BMP2K WILD-TYPE	36	30	16	19	13

'BMP2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S3278. Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BMP2K MUTATED	5	0	0
BMP2K WILD-TYPE	66	27	21

'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S3279. Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BMP2K MUTATED	0	1	2	0	2	0	0
BMP2K WILD-TYPE	18	7	8	8	34	25	12

'BMP2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S3280. Gene #336: 'BMP2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BMP2K MUTATED	0	2	1	2	0	0
BMP2K WILD-TYPE	17	30	12	30	16	7

'RAI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 1

Table S3281. Gene #337: 'RAI2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RAI2 MUTATED	2	0	1	1
RAI2 WILD-TYPE	17	53	29	23

'RAI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S3282. Gene #337: 'RAI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RAI2 MUTATED	0	2	1	1
RAI2 WILD-TYPE	35	28	33	25

'RAI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S3283. Gene #337: 'RAI2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RAI2 MUTATED	1	2	1	0	0
RAI2 WILD-TYPE	28	16	12	9	13

'RAI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S3284. Gene #337: 'RAI2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RAI2 MUTATED	2	2	0	0	0
RAI2 WILD-TYPE	30	16	12	10	10

'RAI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S3285. Gene #337: 'RAI2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RAI2 MUTATED	0	0	1	2	1
RAI2 WILD-TYPE	26	20	27	23	19

'RAI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3286. Gene #337: 'RAI2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RAI2 MUTATED	2	2	0
RAI2 WILD-TYPE	46	51	18

'RAI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S3287. Gene #337: 'RAI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RAI2 MUTATED	0	2	1	1	0
RAI2 WILD-TYPE	37	29	16	20	13

'RAI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S3288. Gene #337: 'RAI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RAI2 MUTATED	2	2	0
RAI2 WILD-TYPE	69	25	21

'RAI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S3289. Gene #337: 'RAI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RAI2 MUTATED	2	0	0	1	0	1	0
RAI2 WILD-TYPE	16	8	10	7	36	24	12

'RAI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S3290. Gene #337: 'RAI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RAI2 MUTATED	0	1	1	2	0	0
RAI2 WILD-TYPE	17	31	12	30	16	7

'COL27A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S3291. Gene #338: 'COL27A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
COL27A1 MUTATED	2	0	2	0
COL27A1 WILD-TYPE	17	53	28	24

Figure S143. Get High-res Image Gene #338: 'COL27A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'COL27A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 1

Table S3292. Gene #338: 'COL27A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
COL27A1 MUTATED	4	0	0	0
COL27A1 WILD-TYPE	31	30	34	26

Figure S144. Get High-res Image Gene #338: 'COL27A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL27A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S3293. Gene #338: 'COL27A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
COL27A1 MUTATED	2	0	0	1	1
COL27A1 WILD-TYPE	24	20	28	24	19

'COL27A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3294. Gene #338: 'COL27A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
COL27A1 MUTATED	2	2	0
COL27A1 WILD-TYPE	46	51	18

'COL27A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S3295. Gene #338: 'COL27A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
COL27A1 MUTATED	1	1	0	2	0
COL27A1 WILD-TYPE	36	30	17	19	13

'COL27A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S3296. Gene #338: 'COL27A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
COL27A1 MUTATED	4	0	0
COL27A1 WILD-TYPE	67	27	21

'COL27A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0895 (Fisher's exact test), Q value = 1

Table S3297. Gene #338: 'COL27A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
COL27A1 MUTATED	1	0	1	1	0	0	0
COL27A1 WILD-TYPE	17	8	9	7	36	25	12

'COL27A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S3298. Gene #338: 'COL27A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
COL27A1 MUTATED	1	0	1	1	0	0
COL27A1 WILD-TYPE	16	32	12	31	16	7

'CCPG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S3299. Gene #339: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCPG1 MUTATED	0	2	2	1
CCPG1 WILD-TYPE	19	51	28	23

'CCPG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S3300. Gene #339: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCPG1 MUTATED	2	2	1	0
CCPG1 WILD-TYPE	33	28	33	26

'CCPG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S3301. Gene #339: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CCPG1 MUTATED	2	2	0	0	0
CCPG1 WILD-TYPE	27	16	13	9	13

'CCPG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S3302. Gene #339: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CCPG1 MUTATED	3	1	0	0	0
CCPG1 WILD-TYPE	29	17	12	10	10

'CCPG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S3303. Gene #339: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCPG1 MUTATED	2	1	0	2	0
CCPG1 WILD-TYPE	24	19	28	23	20

'CCPG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S3304. Gene #339: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCPG1 MUTATED	2	3	0
CCPG1 WILD-TYPE	46	50	18

'CCPG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S3305. Gene #339: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCPG1 MUTATED	3	0	2	0	0
CCPG1 WILD-TYPE	34	31	15	21	13

'CCPG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S3306. Gene #339: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCPG1 MUTATED	3	2	0
CCPG1 WILD-TYPE	68	25	21

'CCPG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S3307. Gene #339: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCPG1 MUTATED	2	1	0	0	1	1	0
CCPG1 WILD-TYPE	16	7	10	8	35	24	12

'CCPG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S3308. Gene #339: 'CCPG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCPG1 MUTATED	0	3	0	2	0	0
CCPG1 WILD-TYPE	17	29	13	30	16	7

'TERF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S3309. Gene #340: 'TERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TERF1 MUTATED	1	1	1	0
TERF1 WILD-TYPE	18	52	29	24

'TERF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S3310. Gene #340: 'TERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TERF1 MUTATED	1	0	1	1
TERF1 WILD-TYPE	34	30	33	25

'TERF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S3311. Gene #340: 'TERF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TERF1 MUTATED	1	0	0	1	1
TERF1 WILD-TYPE	28	18	13	8	12

'TERF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S3312. Gene #340: 'TERF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TERF1 MUTATED	1	0	1	1	0
TERF1 WILD-TYPE	31	18	11	9	10

'TERF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S3313. Gene #340: 'TERF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TERF1 MUTATED	0	0	1	1	1
TERF1 WILD-TYPE	26	20	27	24	19

'TERF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3314. Gene #340: 'TERF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TERF1 MUTATED	1	2	0
TERF1 WILD-TYPE	47	51	18

'TERF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S3315. Gene #340: 'TERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TERF1 MUTATED	2	1	0	0	0
TERF1 WILD-TYPE	35	30	17	21	13

'TERF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3316. Gene #340: 'TERF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TERF1 MUTATED	2	1	0
TERF1 WILD-TYPE	69	26	21

'TERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S3317. Gene #340: 'TERF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TERF1 MUTATED	0	0	0	1	2	0	0
TERF1 WILD-TYPE	18	8	10	7	34	25	12

'TERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S3318. Gene #340: 'TERF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TERF1 MUTATED	0	1	1	1	0	0
TERF1 WILD-TYPE	17	31	12	31	16	7

'HIST1H1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S3319. Gene #341: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HIST1H1B MUTATED	0	3	1	1
HIST1H1B WILD-TYPE	19	50	29	23

'HIST1H1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S3320. Gene #341: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HIST1H1B MUTATED	1	1	2	1
HIST1H1B WILD-TYPE	34	29	32	25

'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S3321. Gene #341: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HIST1H1B MUTATED	1	0	1	2	1
HIST1H1B WILD-TYPE	25	20	27	23	19

'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S3322. Gene #341: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HIST1H1B MUTATED	3	2	0
HIST1H1B WILD-TYPE	45	51	18

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3323. Gene #341: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HIST1H1B MUTATED	2	1	1	1	0
HIST1H1B WILD-TYPE	35	30	16	20	13

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S3324. Gene #341: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HIST1H1B MUTATED	4	1	0
HIST1H1B WILD-TYPE	67	26	21

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S3325. Gene #341: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HIST1H1B MUTATED	1	1	1	0	1	1	0
HIST1H1B WILD-TYPE	17	7	9	8	35	24	12

'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S3326. Gene #341: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HIST1H1B MUTATED	2	1	0	2	0	0
HIST1H1B WILD-TYPE	15	31	13	30	16	7

'ZMYM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3327. Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZMYM4 MUTATED	0	2	1	1
ZMYM4 WILD-TYPE	19	51	29	23

'ZMYM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3328. Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZMYM4 MUTATED	1	1	1	1
ZMYM4 WILD-TYPE	34	29	33	25

'ZMYM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S3329. Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZMYM4 MUTATED	2	0	0	1	0
ZMYM4 WILD-TYPE	27	18	13	8	13

'ZMYM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S3330. Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZMYM4 MUTATED	2	0	0	1	0
ZMYM4 WILD-TYPE	30	18	12	9	10

'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S3331. Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZMYM4 MUTATED	1	2	0	1	0
ZMYM4 WILD-TYPE	25	18	28	24	20

'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S3332. Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZMYM4 MUTATED	1	1	2
ZMYM4 WILD-TYPE	47	52	16

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S3333. Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZMYM4 MUTATED	0	0	0	3	1
ZMYM4 WILD-TYPE	37	31	17	18	12

Figure S145. Get High-res Image Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S3334. Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZMYM4 MUTATED	2	0	2
ZMYM4 WILD-TYPE	69	27	19

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S3335. Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZMYM4 MUTATED	0	0	1	0	1	1	1
ZMYM4 WILD-TYPE	18	8	9	8	35	24	11

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S3336. Gene #342: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZMYM4 MUTATED	0	0	1	1	1	1
ZMYM4 WILD-TYPE	17	32	12	31	15	6

'TSPYL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3337. Gene #343: 'TSPYL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TSPYL6 MUTATED	0	2	1	1
TSPYL6 WILD-TYPE	19	51	29	23

'TSPYL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S3338. Gene #343: 'TSPYL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TSPYL6 MUTATED	1	0	2	1
TSPYL6 WILD-TYPE	34	30	32	25

'TSPYL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S3339. Gene #343: 'TSPYL6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TSPYL6 MUTATED	2	1	0	1	0
TSPYL6 WILD-TYPE	24	19	28	24	20

'TSPYL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S3340. Gene #343: 'TSPYL6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TSPYL6 MUTATED	1	2	1
TSPYL6 WILD-TYPE	47	51	17

'TSPYL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S3341. Gene #343: 'TSPYL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TSPYL6 MUTATED	2	0	0	1	1
TSPYL6 WILD-TYPE	35	31	17	20	12

'TSPYL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S3342. Gene #343: 'TSPYL6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TSPYL6 MUTATED	3	0	1
TSPYL6 WILD-TYPE	68	27	20

'TSPYL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S3343. Gene #343: 'TSPYL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TSPYL6 MUTATED	0	0	1	0	2	0	1
TSPYL6 WILD-TYPE	18	8	9	8	34	25	11

'TSPYL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S3344. Gene #343: 'TSPYL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TSPYL6 MUTATED	2	1	0	1	0	0
TSPYL6 WILD-TYPE	15	31	13	31	16	7

'SULT1C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S3345. Gene #344: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SULT1C3 MUTATED	1	2	0	1
SULT1C3 WILD-TYPE	18	51	30	23

'SULT1C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S3346. Gene #344: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SULT1C3 MUTATED	1	0	2	1
SULT1C3 WILD-TYPE	34	30	32	25

'SULT1C3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S3347. Gene #344: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SULT1C3 MUTATED	0	2	1	0	0
SULT1C3 WILD-TYPE	29	16	12	9	13

'SULT1C3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S3348. Gene #344: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SULT1C3 MUTATED	0	2	1	0	0
SULT1C3 WILD-TYPE	32	16	11	10	10

'SULT1C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S3349. Gene #344: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SULT1C3 MUTATED	2	0	1	0	1
SULT1C3 WILD-TYPE	24	20	27	25	19

'SULT1C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S3350. Gene #344: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SULT1C3 MUTATED	1	3	0
SULT1C3 WILD-TYPE	47	50	18

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S3351. Gene #344: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SULT1C3 MUTATED	3	1	0	0	0
SULT1C3 WILD-TYPE	34	30	17	21	13

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S3352. Gene #344: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SULT1C3 MUTATED	4	0	0
SULT1C3 WILD-TYPE	67	27	21

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S3353. Gene #344: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SULT1C3 MUTATED	0	0	0	0	2	2	0
SULT1C3 WILD-TYPE	18	8	10	8	34	23	12

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S3354. Gene #344: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SULT1C3 MUTATED	0	2	1	1	0	0
SULT1C3 WILD-TYPE	17	30	12	31	16	7

'SH3PXD2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S3355. Gene #345: 'SH3PXD2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SH3PXD2A MUTATED	2	2	2	1
SH3PXD2A WILD-TYPE	17	51	28	23

'SH3PXD2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S3356. Gene #345: 'SH3PXD2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SH3PXD2A MUTATED	2	1	2	2
SH3PXD2A WILD-TYPE	33	29	32	24

'SH3PXD2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S3357. Gene #345: 'SH3PXD2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SH3PXD2A MUTATED	4	0	1	1	0
SH3PXD2A WILD-TYPE	25	18	12	8	13

'SH3PXD2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S3358. Gene #345: 'SH3PXD2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SH3PXD2A MUTATED	5	0	0	0	1
SH3PXD2A WILD-TYPE	27	18	12	10	9

'SH3PXD2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S3359. Gene #345: 'SH3PXD2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SH3PXD2A MUTATED	1	1	1	3	1
SH3PXD2A WILD-TYPE	25	19	27	22	19

'SH3PXD2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S3360. Gene #345: 'SH3PXD2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SH3PXD2A MUTATED	4	2	1
SH3PXD2A WILD-TYPE	44	51	17

'SH3PXD2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S3361. Gene #345: 'SH3PXD2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SH3PXD2A MUTATED	2	1	2	1	1
SH3PXD2A WILD-TYPE	35	30	15	20	12

'SH3PXD2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S3362. Gene #345: 'SH3PXD2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SH3PXD2A MUTATED	4	2	1
SH3PXD2A WILD-TYPE	67	25	20

'SH3PXD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.991 (Fisher's exact test), Q value = 1

Table S3363. Gene #345: 'SH3PXD2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SH3PXD2A MUTATED	1	0	1	0	2	2	1
SH3PXD2A WILD-TYPE	17	8	9	8	34	23	11

'SH3PXD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S3364. Gene #345: 'SH3PXD2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SH3PXD2A MUTATED	1	1	0	3	2	0
SH3PXD2A WILD-TYPE	16	31	13	29	14	7

'ZSWIM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S3365. Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZSWIM4 MUTATED	1	3	1	0
ZSWIM4 WILD-TYPE	18	50	29	24

'ZSWIM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S3366. Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZSWIM4 MUTATED	2	0	2	1
ZSWIM4 WILD-TYPE	33	30	32	25

'ZSWIM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S3367. Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZSWIM4 MUTATED	2	0	1	1	0
ZSWIM4 WILD-TYPE	27	18	12	8	13

'ZSWIM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S3368. Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZSWIM4 MUTATED	3	0	1	0	0
ZSWIM4 WILD-TYPE	29	18	11	10	10

'ZSWIM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3369. Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZSWIM4 MUTATED	1	1	1	1	0
ZSWIM4 WILD-TYPE	25	19	27	24	20

'ZSWIM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3370. Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZSWIM4 MUTATED	2	2	0
ZSWIM4 WILD-TYPE	46	51	18

'ZSWIM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S3371. Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZSWIM4 MUTATED	1	1	0	1	1
ZSWIM4 WILD-TYPE	36	30	17	20	12

'ZSWIM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S3372. Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZSWIM4 MUTATED	4	0	0
ZSWIM4 WILD-TYPE	67	27	21

'ZSWIM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 1

Table S3373. Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZSWIM4 MUTATED	0	2	1	0	1	0	0
ZSWIM4 WILD-TYPE	18	6	9	8	35	25	12

Figure S146. Get High-res Image Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZSWIM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 1

Table S3374. Gene #346: 'ZSWIM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZSWIM4 MUTATED	3	0	0	1	0	0
ZSWIM4 WILD-TYPE	14	32	13	31	16	7

'CCR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 1

Table S3375. Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCR3 MUTATED	0	0	1	3
CCR3 WILD-TYPE	19	53	29	21

Figure S147. Get High-res Image Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 1

Table S3376. Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCR3 MUTATED	0	0	1	3
CCR3 WILD-TYPE	35	30	33	23

Figure S148. Get High-res Image Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 1

Table S3377. Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCR3 MUTATED	1	0	0	0	3
CCR3 WILD-TYPE	25	20	28	25	17

Figure S149. Get High-res Image Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S3378. Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCR3 MUTATED	1	3	0
CCR3 WILD-TYPE	47	50	18

'CCR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S3379. Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCR3 MUTATED	0	3	1	0	0
CCR3 WILD-TYPE	37	28	16	21	13

'CCR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S3380. Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCR3 MUTATED	4	0	0
CCR3 WILD-TYPE	67	27	21

'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S3381. Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCR3 MUTATED	0	0	0	1	1	2	0
CCR3 WILD-TYPE	18	8	10	7	35	23	12

'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S3382. Gene #347: 'CCR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCR3 MUTATED	1	1	2	0	0	0
CCR3 WILD-TYPE	16	31	11	32	16	7

'CPLX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S3383. Gene #348: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CPLX3 MUTATED	0	3	0	1
CPLX3 WILD-TYPE	19	50	30	23

'CPLX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S3384. Gene #348: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CPLX3 MUTATED	1	1	2	0
CPLX3 WILD-TYPE	34	29	32	26

'CPLX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3385. Gene #348: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CPLX3 MUTATED	1	1	1	1	0
CPLX3 WILD-TYPE	25	19	27	24	20

'CPLX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3386. Gene #348: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CPLX3 MUTATED	2	2	0
CPLX3 WILD-TYPE	46	51	18

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S3387. Gene #348: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CPLX3 MUTATED	0	1	1	1	1
CPLX3 WILD-TYPE	37	30	16	20	12

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S3388. Gene #348: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CPLX3 MUTATED	2	2	0
CPLX3 WILD-TYPE	69	25	21

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S3389. Gene #348: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CPLX3 MUTATED	2	0	0	0	1	1	0
CPLX3 WILD-TYPE	16	8	10	8	35	24	12

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S3390. Gene #348: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CPLX3 MUTATED	0	1	1	2	0	0
CPLX3 WILD-TYPE	17	31	12	30	16	7

'RAD17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S3391. Gene #349: 'RAD17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RAD17 MUTATED	2	1	1	1
RAD17 WILD-TYPE	17	52	29	23

'RAD17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S3392. Gene #349: 'RAD17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RAD17 MUTATED	2	0	1	2
RAD17 WILD-TYPE	33	30	33	24

'RAD17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S3393. Gene #349: 'RAD17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RAD17 MUTATED	1	2	2	0	0
RAD17 WILD-TYPE	28	16	11	9	13

'RAD17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S3394. Gene #349: 'RAD17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RAD17 MUTATED	0	2	1	1	1
RAD17 WILD-TYPE	32	16	11	9	9

'RAD17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S3395. Gene #349: 'RAD17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RAD17 MUTATED	1	0	2	0	2
RAD17 WILD-TYPE	25	20	26	25	18

'RAD17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S3396. Gene #349: 'RAD17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RAD17 MUTATED	1	4	0
RAD17 WILD-TYPE	47	49	18

'RAD17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S3397. Gene #349: 'RAD17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RAD17 MUTATED	1	3	0	1	0
RAD17 WILD-TYPE	36	28	17	20	13

'RAD17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S3398. Gene #349: 'RAD17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RAD17 MUTATED	5	0	0
RAD17 WILD-TYPE	66	27	21

'RAD17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S3399. Gene #349: 'RAD17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RAD17 MUTATED	0	1	0	1	2	1	0
RAD17 WILD-TYPE	18	7	10	7	34	24	12

'RAD17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S3400. Gene #349: 'RAD17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RAD17 MUTATED	1	1	2	0	1	0
RAD17 WILD-TYPE	16	31	11	32	15	7

'RANBP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S3401. Gene #350: 'RANBP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RANBP9 MUTATED	0	4	0	1
RANBP9 WILD-TYPE	19	49	30	23

'RANBP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3402. Gene #350: 'RANBP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RANBP9 MUTATED	2	1	1	1
RANBP9 WILD-TYPE	33	29	33	25

'RANBP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S3403. Gene #350: 'RANBP9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RANBP9 MUTATED	2	0	1	0	0
RANBP9 WILD-TYPE	27	18	12	9	13

'RANBP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3404. Gene #350: 'RANBP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RANBP9 MUTATED	2	0	0	0	1
RANBP9 WILD-TYPE	30	18	12	10	9

'RANBP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S3405. Gene #350: 'RANBP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RANBP9 MUTATED	1	1	1	0	1
RANBP9 WILD-TYPE	25	19	27	25	19

'RANBP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0838 (Fisher's exact test), Q value = 1

Table S3406. Gene #350: 'RANBP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RANBP9 MUTATED	0	2	2
RANBP9 WILD-TYPE	48	51	16

'RANBP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S3407. Gene #350: 'RANBP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RANBP9 MUTATED	2	0	0	1	1
RANBP9 WILD-TYPE	35	31	17	20	12

'RANBP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S3408. Gene #350: 'RANBP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RANBP9 MUTATED	2	0	2
RANBP9 WILD-TYPE	69	27	19

'RANBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S3409. Gene #350: 'RANBP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RANBP9 MUTATED	0	0	0	1	2	0	1
RANBP9 WILD-TYPE	18	8	10	7	34	25	11

'RANBP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S3410. Gene #350: 'RANBP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RANBP9 MUTATED	0	2	0	0	1	1
RANBP9 WILD-TYPE	17	30	13	32	15	6

'RASAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S3411. Gene #351: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RASAL2 MUTATED	1	1	2	1
RASAL2 WILD-TYPE	18	52	28	23

'RASAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S3412. Gene #351: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RASAL2 MUTATED	3	0	2	0
RASAL2 WILD-TYPE	32	30	32	26

'RASAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S3413. Gene #351: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RASAL2 MUTATED	1	0	2	2	0
RASAL2 WILD-TYPE	25	20	26	23	20

'RASAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S3414. Gene #351: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RASAL2 MUTATED	2	3	0
RASAL2 WILD-TYPE	46	50	18

'RASAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S3415. Gene #351: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RASAL2 MUTATED	1	0	1	3	0
RASAL2 WILD-TYPE	36	31	16	18	13

'RASAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S3416. Gene #351: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RASAL2 MUTATED	4	1	0
RASAL2 WILD-TYPE	67	26	21

'RASAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S3417. Gene #351: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RASAL2 MUTATED	1	0	1	0	2	0	0
RASAL2 WILD-TYPE	17	8	9	8	34	25	12

'RASAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S3418. Gene #351: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RASAL2 MUTATED	0	2	0	2	0	0
RASAL2 WILD-TYPE	17	30	13	30	16	7

'CD86 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S3419. Gene #352: 'CD86 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CD86 MUTATED	1	2	1	0
CD86 WILD-TYPE	18	51	29	24

'CD86 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S3420. Gene #352: 'CD86 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CD86 MUTATED	1	0	3	0
CD86 WILD-TYPE	34	30	31	26

'CD86 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S3421. Gene #352: 'CD86 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CD86 MUTATED	2	0	0	1	0
CD86 WILD-TYPE	27	18	13	8	13

'CD86 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S3422. Gene #352: 'CD86 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CD86 MUTATED	3	0	0	0	0
CD86 WILD-TYPE	29	18	12	10	10

'CD86 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S3423. Gene #352: 'CD86 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CD86 MUTATED	1	0	2	1	0
CD86 WILD-TYPE	25	20	26	24	20

'CD86 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3424. Gene #352: 'CD86 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CD86 MUTATED	2	2	0
CD86 WILD-TYPE	46	51	18

'CD86 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S3425. Gene #352: 'CD86 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CD86 MUTATED	2	0	0	2	0
CD86 WILD-TYPE	35	31	17	19	13

'CD86 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S3426. Gene #352: 'CD86 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CD86 MUTATED	4	0	0
CD86 WILD-TYPE	67	27	21

'CD86 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S3427. Gene #352: 'CD86 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CD86 MUTATED	0	0	1	0	3	0	0
CD86 WILD-TYPE	18	8	9	8	33	25	12

'CD86 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S3428. Gene #352: 'CD86 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CD86 MUTATED	1	2	0	1	0	0
CD86 WILD-TYPE	16	30	13	31	16	7

'OR1N2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 1

Table S3429. Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OR1N2 MUTATED	1	0	2	3
OR1N2 WILD-TYPE	18	53	28	21

Figure S150. Get High-res Image Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OR1N2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S3430. Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OR1N2 MUTATED	2	0	3	1
OR1N2 WILD-TYPE	33	30	31	25

'OR1N2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S3431. Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
OR1N2 MUTATED	2	0	1	1	0
OR1N2 WILD-TYPE	27	18	12	8	13

'OR1N2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S3432. Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
OR1N2 MUTATED	4	0	0	0	0
OR1N2 WILD-TYPE	28	18	12	10	10

'OR1N2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S3433. Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OR1N2 MUTATED	0	0	3	1	2
OR1N2 WILD-TYPE	26	20	25	24	18

'OR1N2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3434. Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OR1N2 MUTATED	2	3	1
OR1N2 WILD-TYPE	46	50	17

'OR1N2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S3435. Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OR1N2 MUTATED	0	3	1	2	0
OR1N2 WILD-TYPE	37	28	16	19	13

'OR1N2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3436. Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OR1N2 MUTATED	4	1	1
OR1N2 WILD-TYPE	67	26	20

'OR1N2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S3437. Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OR1N2 MUTATED	1	0	1	0	1	3	0
OR1N2 WILD-TYPE	17	8	9	8	35	22	12

'OR1N2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S3438. Gene #353: 'OR1N2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OR1N2 MUTATED	0	2	1	2	1	0
OR1N2 WILD-TYPE	17	30	12	30	15	7

'KIAA0408 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S3439. Gene #354: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KIAA0408 MUTATED	0	3	2	1
KIAA0408 WILD-TYPE	19	50	28	23

'KIAA0408 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S3440. Gene #354: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KIAA0408 MUTATED	4	0	1	1
KIAA0408 WILD-TYPE	31	30	33	25

'KIAA0408 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3441. Gene #354: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KIAA0408 MUTATED	2	1	1	1	1
KIAA0408 WILD-TYPE	27	17	12	8	12

'KIAA0408 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3442. Gene #354: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KIAA0408 MUTATED	3	1	1	0	1
KIAA0408 WILD-TYPE	29	17	11	10	9

'KIAA0408 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S3443. Gene #354: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KIAA0408 MUTATED	3	0	1	1	1
KIAA0408 WILD-TYPE	23	20	27	24	19

'KIAA0408 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3444. Gene #354: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KIAA0408 MUTATED	2	3	1
KIAA0408 WILD-TYPE	46	50	17

'KIAA0408 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S3445. Gene #354: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KIAA0408 MUTATED	3	2	0	1	0
KIAA0408 WILD-TYPE	34	29	17	20	13

'KIAA0408 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S3446. Gene #354: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KIAA0408 MUTATED	5	0	1
KIAA0408 WILD-TYPE	66	27	20

'KIAA0408 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S3447. Gene #354: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KIAA0408 MUTATED	0	0	1	0	2	3	0
KIAA0408 WILD-TYPE	18	8	9	8	34	22	12

'KIAA0408 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S3448. Gene #354: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KIAA0408 MUTATED	0	4	0	1	1	0
KIAA0408 WILD-TYPE	17	28	13	31	15	7

'GPRIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S3449. Gene #355: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GPRIN2 MUTATED	0	3	1	0
GPRIN2 WILD-TYPE	19	50	29	24

'GPRIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S3450. Gene #355: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GPRIN2 MUTATED	2	1	1	0
GPRIN2 WILD-TYPE	33	29	33	26

'GPRIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S3451. Gene #355: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GPRIN2 MUTATED	2	0	0	1	0
GPRIN2 WILD-TYPE	27	18	13	8	13

'GPRIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3452. Gene #355: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GPRIN2 MUTATED	3	0	0	0	0
GPRIN2 WILD-TYPE	29	18	12	10	10

'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3453. Gene #355: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GPRIN2 MUTATED	1	1	1	1	0
GPRIN2 WILD-TYPE	25	19	27	24	20

'GPRIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S3454. Gene #355: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GPRIN2 MUTATED	3	1	0
GPRIN2 WILD-TYPE	45	52	18

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S3455. Gene #355: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GPRIN2 MUTATED	2	0	0	1	1
GPRIN2 WILD-TYPE	35	31	17	20	12

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S3456. Gene #355: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GPRIN2 MUTATED	3	0	1
GPRIN2 WILD-TYPE	68	27	20

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S3457. Gene #355: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GPRIN2 MUTATED	1	0	1	0	1	0	1
GPRIN2 WILD-TYPE	17	8	9	8	35	25	11

'GPRIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S3458. Gene #355: 'GPRIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GPRIN2 MUTATED	2	0	0	2	0	0
GPRIN2 WILD-TYPE	15	32	13	30	16	7

'HSP90AA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S3459. Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HSP90AA1 MUTATED	0	1	1	2
HSP90AA1 WILD-TYPE	19	52	29	22

'HSP90AA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S3460. Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HSP90AA1 MUTATED	1	2	1	0
HSP90AA1 WILD-TYPE	34	28	33	26

'HSP90AA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 1

Table S3461. Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HSP90AA1 MUTATED	1	0	0	2	0
HSP90AA1 WILD-TYPE	28	18	13	7	13

'HSP90AA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S3462. Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HSP90AA1 MUTATED	2	0	0	1	0
HSP90AA1 WILD-TYPE	30	18	12	9	10

'HSP90AA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 1

Table S3463. Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HSP90AA1 MUTATED	0	3	0	1	0
HSP90AA1 WILD-TYPE	26	17	28	24	20

Figure S151. Get High-res Image Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HSP90AA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S3464. Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HSP90AA1 MUTATED	1	1	2
HSP90AA1 WILD-TYPE	47	52	16

'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 1

Table S3465. Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HSP90AA1 MUTATED	1	0	0	3	0
HSP90AA1 WILD-TYPE	36	31	17	18	13

'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S3466. Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HSP90AA1 MUTATED	2	0	2
HSP90AA1 WILD-TYPE	69	27	19

'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 1

Table S3467. Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HSP90AA1 MUTATED	0	0	1	0	0	1	2
HSP90AA1 WILD-TYPE	18	8	9	8	36	24	10

'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 1

Table S3468. Gene #356: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HSP90AA1 MUTATED	0	1	0	1	0	2
HSP90AA1 WILD-TYPE	17	31	13	31	16	5

'SHPRH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S3469. Gene #357: 'SHPRH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SHPRH MUTATED	1	2	2	0
SHPRH WILD-TYPE	18	51	28	24

'SHPRH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S3470. Gene #357: 'SHPRH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SHPRH MUTATED	3	0	1	1
SHPRH WILD-TYPE	32	30	33	25

'SHPRH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S3471. Gene #357: 'SHPRH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SHPRH MUTATED	0	1	0	1	1
SHPRH WILD-TYPE	29	17	13	8	12

'SHPRH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S3472. Gene #357: 'SHPRH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SHPRH MUTATED	1	1	1	0	0
SHPRH WILD-TYPE	31	17	11	10	10

'SHPRH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S3473. Gene #357: 'SHPRH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SHPRH MUTATED	1	0	2	1	1
SHPRH WILD-TYPE	25	20	26	24	19

'SHPRH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S3474. Gene #357: 'SHPRH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SHPRH MUTATED	3	2	0
SHPRH WILD-TYPE	45	51	18

'SHPRH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S3475. Gene #357: 'SHPRH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SHPRH MUTATED	2	1	0	2	0
SHPRH WILD-TYPE	35	30	17	19	13

'SHPRH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S3476. Gene #357: 'SHPRH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SHPRH MUTATED	5	0	0
SHPRH WILD-TYPE	66	27	21

'SHPRH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S3477. Gene #357: 'SHPRH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SHPRH MUTATED	0	0	1	1	2	0	0
SHPRH WILD-TYPE	18	8	9	7	34	25	12

'SHPRH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S3478. Gene #357: 'SHPRH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SHPRH MUTATED	0	2	1	1	0	0
SHPRH WILD-TYPE	17	30	12	31	16	7

'CCKAR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S3479. Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCKAR MUTATED	0	1	1	2
CCKAR WILD-TYPE	19	52	29	22

'CCKAR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S3480. Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCKAR MUTATED	1	2	0	1
CCKAR WILD-TYPE	34	28	34	25

'CCKAR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S3481. Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCKAR MUTATED	0	1	0	1	1
CCKAR WILD-TYPE	26	19	28	24	19

'CCKAR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 1

Table S3482. Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCKAR MUTATED	1	0	2
CCKAR WILD-TYPE	47	53	16

Figure S152. Get High-res Image Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCKAR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 1

Table S3483. Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCKAR MUTATED	0	0	0	2	1
CCKAR WILD-TYPE	37	31	17	19	12

Figure S153. Get High-res Image Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCKAR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S3484. Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCKAR MUTATED	1	0	2
CCKAR WILD-TYPE	70	27	19

'CCKAR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 1

Table S3485. Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCKAR MUTATED	0	0	1	1	0	0	1
CCKAR WILD-TYPE	18	8	9	7	36	25	11

Figure S154. Get High-res Image Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCKAR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S3486. Gene #358: 'CCKAR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCKAR MUTATED	0	0	0	1	1	1
CCKAR WILD-TYPE	17	32	13	31	15	6

'CHRNA9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S3487. Gene #359: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CHRNA9 MUTATED	0	4	0	0
CHRNA9 WILD-TYPE	19	49	30	24

'CHRNA9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S3488. Gene #359: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CHRNA9 MUTATED	3	0	1	0
CHRNA9 WILD-TYPE	32	30	33	26

'CHRNA9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S3489. Gene #359: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CHRNA9 MUTATED	2	0	1	1	0
CHRNA9 WILD-TYPE	27	18	12	8	13

'CHRNA9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S3490. Gene #359: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CHRNA9 MUTATED	2	0	1	1	0
CHRNA9 WILD-TYPE	30	18	11	9	10

'CHRNA9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3491. Gene #359: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CHRNA9 MUTATED	1	1	1	1	0
CHRNA9 WILD-TYPE	25	19	27	24	20

'CHRNA9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S3492. Gene #359: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CHRNA9 MUTATED	3	1	0
CHRNA9 WILD-TYPE	45	52	18

'CHRNA9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S3493. Gene #359: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CHRNA9 MUTATED	1	1	1	0	1
CHRNA9 WILD-TYPE	36	30	16	21	12

'CHRNA9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S3494. Gene #359: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CHRNA9 MUTATED	3	0	1
CHRNA9 WILD-TYPE	68	27	20

'CHRNA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S3495. Gene #359: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CHRNA9 MUTATED	0	0	0	0	2	2	0
CHRNA9 WILD-TYPE	18	8	10	8	34	23	12

'CHRNA9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S3496. Gene #359: 'CHRNA9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CHRNA9 MUTATED	0	2	0	1	1	0
CHRNA9 WILD-TYPE	17	30	13	31	15	7

'SH2D2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S3497. Gene #360: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SH2D2A MUTATED	1	3	1	0
SH2D2A WILD-TYPE	18	50	29	24

'SH2D2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S3498. Gene #360: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SH2D2A MUTATED	1	0	3	1
SH2D2A WILD-TYPE	34	30	31	25

'SH2D2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S3499. Gene #360: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SH2D2A MUTATED	0	0	1	1	1
SH2D2A WILD-TYPE	29	18	12	8	12

'SH2D2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S3500. Gene #360: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SH2D2A MUTATED	1	0	0	0	2
SH2D2A WILD-TYPE	31	18	12	10	8

'SH2D2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S3501. Gene #360: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SH2D2A MUTATED	0	0	3	1	1
SH2D2A WILD-TYPE	26	20	25	24	19

'SH2D2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S3502. Gene #360: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SH2D2A MUTATED	2	3	0
SH2D2A WILD-TYPE	46	50	18

'SH2D2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S3503. Gene #360: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SH2D2A MUTATED	2	1	0	2	0
SH2D2A WILD-TYPE	35	30	17	19	13

'SH2D2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S3504. Gene #360: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SH2D2A MUTATED	5	0	0
SH2D2A WILD-TYPE	66	27	21

'SH2D2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S3505. Gene #360: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SH2D2A MUTATED	0	1	1	1	2	0	0
SH2D2A WILD-TYPE	18	7	9	7	34	25	12

'SH2D2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S3506. Gene #360: 'SH2D2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SH2D2A MUTATED	1	2	1	1	0	0
SH2D2A WILD-TYPE	16	30	12	31	16	7

'SLC9A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S3507. Gene #361: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC9A11 MUTATED	0	2	2	1
SLC9A11 WILD-TYPE	19	51	28	23

'SLC9A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 1

Table S3508. Gene #361: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC9A11 MUTATED	4	1	0	0
SLC9A11 WILD-TYPE	31	29	34	26

'SLC9A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S3509. Gene #361: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLC9A11 MUTATED	3	0	0	2	0
SLC9A11 WILD-TYPE	26	18	13	7	13

'SLC9A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S3510. Gene #361: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLC9A11 MUTATED	4	0	0	1	0
SLC9A11 WILD-TYPE	28	18	12	9	10

'SLC9A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S3511. Gene #361: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC9A11 MUTATED	0	1	1	3	0
SLC9A11 WILD-TYPE	26	19	27	22	20

'SLC9A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S3512. Gene #361: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC9A11 MUTATED	4	1	0
SLC9A11 WILD-TYPE	44	52	18

'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S3513. Gene #361: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC9A11 MUTATED	1	0	1	2	1
SLC9A11 WILD-TYPE	36	31	16	19	12

'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3514. Gene #361: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC9A11 MUTATED	3	1	1
SLC9A11 WILD-TYPE	68	26	20

'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S3515. Gene #361: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC9A11 MUTATED	1	0	1	0	2	1	0
SLC9A11 WILD-TYPE	17	8	9	8	34	24	12

'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S3516. Gene #361: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC9A11 MUTATED	0	1	0	3	1	0
SLC9A11 WILD-TYPE	17	31	13	29	15	7

'P2RY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S3517. Gene #362: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
P2RY1 MUTATED	0	5	1	0
P2RY1 WILD-TYPE	19	48	29	24

'P2RY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S3518. Gene #362: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
P2RY1 MUTATED	3	0	3	0
P2RY1 WILD-TYPE	32	30	31	26

'P2RY1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S3519. Gene #362: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
P2RY1 MUTATED	3	0	1	1	1
P2RY1 WILD-TYPE	26	18	12	8	12

'P2RY1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S3520. Gene #362: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
P2RY1 MUTATED	4	0	2	0	0
P2RY1 WILD-TYPE	28	18	10	10	10

'P2RY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S3521. Gene #362: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
P2RY1 MUTATED	2	0	3	1	0
P2RY1 WILD-TYPE	24	20	25	24	20

'P2RY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S3522. Gene #362: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
P2RY1 MUTATED	3	3	0
P2RY1 WILD-TYPE	45	50	18

'P2RY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S3523. Gene #362: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
P2RY1 MUTATED	4	1	0	1	0
P2RY1 WILD-TYPE	33	30	17	20	13

'P2RY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S3524. Gene #362: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
P2RY1 MUTATED	6	0	0
P2RY1 WILD-TYPE	65	27	21

'P2RY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S3525. Gene #362: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
P2RY1 MUTATED	0	0	1	0	4	1	0
P2RY1 WILD-TYPE	18	8	9	8	32	24	12

'P2RY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S3526. Gene #362: 'P2RY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
P2RY1 MUTATED	0	5	0	1	0	0
P2RY1 WILD-TYPE	17	27	13	31	16	7

'SCYL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00952 (Fisher's exact test), Q value = 1

Table S3527. Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SCYL3 MUTATED	3	0	1	0
SCYL3 WILD-TYPE	16	53	29	24

Figure S155. Get High-res Image Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SCYL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S3528. Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SCYL3 MUTATED	2	0	2	0
SCYL3 WILD-TYPE	33	30	32	26

'SCYL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S3529. Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SCYL3 MUTATED	1	1	0	1	0
SCYL3 WILD-TYPE	28	17	13	8	13

'SCYL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3530. Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SCYL3 MUTATED	2	1	0	0	0
SCYL3 WILD-TYPE	30	17	12	10	10

'SCYL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S3531. Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SCYL3 MUTATED	2	0	1	1	0
SCYL3 WILD-TYPE	24	20	27	24	20

'SCYL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S3532. Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SCYL3 MUTATED	1	3	0
SCYL3 WILD-TYPE	47	50	18

'SCYL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S3533. Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SCYL3 MUTATED	1	0	0	2	1
SCYL3 WILD-TYPE	36	31	17	19	12

'SCYL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S3534. Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SCYL3 MUTATED	4	0	0
SCYL3 WILD-TYPE	67	27	21

'SCYL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S3535. Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SCYL3 MUTATED	1	0	1	0	2	0	0
SCYL3 WILD-TYPE	17	8	9	8	34	25	12

'SCYL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S3536. Gene #363: 'SCYL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SCYL3 MUTATED	1	2	0	1	0	0
SCYL3 WILD-TYPE	16	30	13	31	16	7

'INTS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S3537. Gene #364: 'INTS5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
INTS5 MUTATED	1	1	1	0
INTS5 WILD-TYPE	18	52	29	24

'INTS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3538. Gene #364: 'INTS5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
INTS5 MUTATED	1	1	1	0
INTS5 WILD-TYPE	34	29	33	26

'INTS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S3539. Gene #364: 'INTS5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
INTS5 MUTATED	0	0	1	2	0
INTS5 WILD-TYPE	26	20	27	23	20

'INTS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S3540. Gene #364: 'INTS5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
INTS5 MUTATED	2	1	0
INTS5 WILD-TYPE	46	52	18

'INTS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S3541. Gene #364: 'INTS5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
INTS5 MUTATED	1	0	1	1	0
INTS5 WILD-TYPE	36	31	16	20	13

'INTS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3542. Gene #364: 'INTS5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
INTS5 MUTATED	2	1	0
INTS5 WILD-TYPE	69	26	21

'INTS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0909 (Fisher's exact test), Q value = 1

Table S3543. Gene #364: 'INTS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
INTS5 MUTATED	1	1	1	0	0	0	0
INTS5 WILD-TYPE	17	7	9	8	36	25	12

'INTS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S3544. Gene #364: 'INTS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
INTS5 MUTATED	0	1	0	2	0	0
INTS5 WILD-TYPE	17	31	13	30	16	7

'DAAM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S3545. Gene #365: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DAAM1 MUTATED	1	4	1	0
DAAM1 WILD-TYPE	18	49	29	24

'DAAM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S3546. Gene #365: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DAAM1 MUTATED	3	1	1	1
DAAM1 WILD-TYPE	32	29	33	25

'DAAM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S3547. Gene #365: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DAAM1 MUTATED	2	0	0	1	1
DAAM1 WILD-TYPE	27	18	13	8	12

'DAAM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S3548. Gene #365: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DAAM1 MUTATED	3	1	0	0	0
DAAM1 WILD-TYPE	29	17	12	10	10

'DAAM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S3549. Gene #365: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DAAM1 MUTATED	2	1	1	2	0
DAAM1 WILD-TYPE	24	19	27	23	20

'DAAM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3550. Gene #365: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DAAM1 MUTATED	2	4	0
DAAM1 WILD-TYPE	46	49	18

'DAAM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S3551. Gene #365: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DAAM1 MUTATED	3	0	1	1	1
DAAM1 WILD-TYPE	34	31	16	20	12

'DAAM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S3552. Gene #365: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DAAM1 MUTATED	5	1	0
DAAM1 WILD-TYPE	66	26	21

'DAAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S3553. Gene #365: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DAAM1 MUTATED	0	1	2	0	3	0	0
DAAM1 WILD-TYPE	18	7	8	8	33	25	12

'DAAM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S3554. Gene #365: 'DAAM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DAAM1 MUTATED	2	2	0	2	0	0
DAAM1 WILD-TYPE	15	30	13	30	16	7

'RERE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S3555. Gene #366: 'RERE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RERE MUTATED	2	2	2	0
RERE WILD-TYPE	17	51	28	24

'RERE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3556. Gene #366: 'RERE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RERE MUTATED	2	1	2	1
RERE WILD-TYPE	33	29	32	25

'RERE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S3557. Gene #366: 'RERE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RERE MUTATED	0	2	0	1	0
RERE WILD-TYPE	29	16	13	8	13

'RERE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3558. Gene #366: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RERE MUTATED	2	1	0	0	0
RERE WILD-TYPE	30	17	12	10	10

'RERE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S3559. Gene #366: 'RERE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RERE MUTATED	3	0	0	2	1
RERE WILD-TYPE	23	20	28	23	19

'RERE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S3560. Gene #366: 'RERE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RERE MUTATED	3	3	0
RERE WILD-TYPE	45	50	18

'RERE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S3561. Gene #366: 'RERE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RERE MUTATED	3	1	1	1	0
RERE WILD-TYPE	34	30	16	20	13

'RERE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S3562. Gene #366: 'RERE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RERE MUTATED	4	2	0
RERE WILD-TYPE	67	25	21

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S3563. Gene #366: 'RERE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RERE MUTATED	2	1	1	1	1	0	0
RERE WILD-TYPE	16	7	9	7	35	25	12

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S3564. Gene #366: 'RERE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RERE MUTATED	0	2	1	3	0	0
RERE WILD-TYPE	17	30	12	29	16	7

'CUX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S3565. Gene #367: 'CUX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CUX2 MUTATED	0	3	2	0
CUX2 WILD-TYPE	19	50	28	24

'CUX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S3566. Gene #367: 'CUX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CUX2 MUTATED	2	0	2	1
CUX2 WILD-TYPE	33	30	32	25

'CUX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S3567. Gene #367: 'CUX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CUX2 MUTATED	0	2	0	1	1
CUX2 WILD-TYPE	29	16	13	8	12

'CUX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S3568. Gene #367: 'CUX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CUX2 MUTATED	1	2	0	0	1
CUX2 WILD-TYPE	31	16	12	10	9

'CUX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S3569. Gene #367: 'CUX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CUX2 MUTATED	1	0	2	1	1
CUX2 WILD-TYPE	25	20	26	24	19

'CUX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S3570. Gene #367: 'CUX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CUX2 MUTATED	3	2	0
CUX2 WILD-TYPE	45	51	18

'CUX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S3571. Gene #367: 'CUX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CUX2 MUTATED	3	1	0	1	0
CUX2 WILD-TYPE	34	30	17	20	13

'CUX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S3572. Gene #367: 'CUX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CUX2 MUTATED	5	0	0
CUX2 WILD-TYPE	66	27	21

'CUX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S3573. Gene #367: 'CUX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CUX2 MUTATED	0	0	1	1	2	1	0
CUX2 WILD-TYPE	18	8	9	7	34	24	12

'CUX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S3574. Gene #367: 'CUX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CUX2 MUTATED	0	3	1	1	0	0
CUX2 WILD-TYPE	17	29	12	31	16	7

'RPTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S3575. Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RPTN MUTATED	1	6	4	0
RPTN WILD-TYPE	18	47	26	24

'RPTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S3576. Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RPTN MUTATED	3	4	3	1
RPTN WILD-TYPE	32	26	31	25

'RPTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S3577. Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RPTN MUTATED	1	0	1	1	1
RPTN WILD-TYPE	28	18	12	8	12

'RPTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S3578. Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RPTN MUTATED	2	0	1	0	1
RPTN WILD-TYPE	30	18	11	10	9

'RPTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S3579. Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RPTN MUTATED	1	3	2	5	0
RPTN WILD-TYPE	25	17	26	20	20

'RPTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0974 (Fisher's exact test), Q value = 1

Table S3580. Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RPTN MUTATED	6	2	3
RPTN WILD-TYPE	42	51	15

'RPTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0419 (Fisher's exact test), Q value = 1

Table S3581. Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RPTN MUTATED	4	0	3	1	3
RPTN WILD-TYPE	33	31	14	20	10

Figure S156. Get High-res Image Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RPTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S3582. Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RPTN MUTATED	5	4	2
RPTN WILD-TYPE	66	23	19

'RPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S3583. Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RPTN MUTATED	2	1	1	0	3	2	2
RPTN WILD-TYPE	16	7	9	8	33	23	10

'RPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S3584. Gene #368: 'RPTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RPTN MUTATED	1	2	0	5	2	1
RPTN WILD-TYPE	16	30	13	27	14	6

'HIST1H2BJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S3585. Gene #369: 'HIST1H2BJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HIST1H2BJ MUTATED	0	2	2	0
HIST1H2BJ WILD-TYPE	19	51	28	24

'HIST1H2BJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S3586. Gene #369: 'HIST1H2BJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HIST1H2BJ MUTATED	2	2	0	0
HIST1H2BJ WILD-TYPE	33	28	34	26

'HIST1H2BJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S3587. Gene #369: 'HIST1H2BJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HIST1H2BJ MUTATED	0	2	1	1	0
HIST1H2BJ WILD-TYPE	26	18	27	24	20

'HIST1H2BJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S3588. Gene #369: 'HIST1H2BJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HIST1H2BJ MUTATED	1	1	2
HIST1H2BJ WILD-TYPE	47	52	16

'HIST1H2BJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 1

Table S3589. Gene #369: 'HIST1H2BJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HIST1H2BJ MUTATED	0	0	0	2	2
HIST1H2BJ WILD-TYPE	37	31	17	19	11

Figure S157. Get High-res Image Gene #369: 'HIST1H2BJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HIST1H2BJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 1

Table S3590. Gene #369: 'HIST1H2BJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HIST1H2BJ MUTATED	1	0	3
HIST1H2BJ WILD-TYPE	70	27	18

Figure S158. Get High-res Image Gene #369: 'HIST1H2BJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HIST1H2BJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 1

Table S3591. Gene #369: 'HIST1H2BJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HIST1H2BJ MUTATED	0	0	1	0	0	1	2
HIST1H2BJ WILD-TYPE	18	8	9	8	36	24	10

'HIST1H2BJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S3592. Gene #369: 'HIST1H2BJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HIST1H2BJ MUTATED	0	0	0	2	1	1
HIST1H2BJ WILD-TYPE	17	32	13	30	15	6

'SLCO2A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S3593. Gene #370: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLCO2A1 MUTATED	0	3	1	0
SLCO2A1 WILD-TYPE	19	50	29	24

'SLCO2A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S3594. Gene #370: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLCO2A1 MUTATED	1	1	2	0
SLCO2A1 WILD-TYPE	34	29	32	26

'SLCO2A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S3595. Gene #370: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLCO2A1 MUTATED	1	0	1	2	0
SLCO2A1 WILD-TYPE	25	20	27	23	20

'SLCO2A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3596. Gene #370: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLCO2A1 MUTATED	2	2	0
SLCO2A1 WILD-TYPE	46	51	18

'SLCO2A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S3597. Gene #370: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLCO2A1 MUTATED	1	0	1	2	0
SLCO2A1 WILD-TYPE	36	31	16	19	13

'SLCO2A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3598. Gene #370: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLCO2A1 MUTATED	3	1	0
SLCO2A1 WILD-TYPE	68	26	21

'SLCO2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 1

Table S3599. Gene #370: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLCO2A1 MUTATED	1	1	2	0	0	0	0
SLCO2A1 WILD-TYPE	17	7	8	8	36	25	12

Figure S159. Get High-res Image Gene #370: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLCO2A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S3600. Gene #370: 'SLCO2A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLCO2A1 MUTATED	1	1	0	2	0	0
SLCO2A1 WILD-TYPE	16	31	13	30	16	7

'TULP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S3601. Gene #371: 'TULP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TULP1 MUTATED	0	1	2	0
TULP1 WILD-TYPE	19	52	28	24

'TULP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S3602. Gene #371: 'TULP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TULP1 MUTATED	0	1	1	1
TULP1 WILD-TYPE	35	29	33	25

'TULP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S3603. Gene #371: 'TULP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TULP1 MUTATED	0	0	1	1	1
TULP1 WILD-TYPE	26	20	27	24	19

'TULP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3604. Gene #371: 'TULP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TULP1 MUTATED	1	2	0
TULP1 WILD-TYPE	47	51	18

'TULP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S3605. Gene #371: 'TULP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TULP1 MUTATED	1	1	1	0	0
TULP1 WILD-TYPE	36	30	16	21	13

'TULP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3606. Gene #371: 'TULP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TULP1 MUTATED	2	1	0
TULP1 WILD-TYPE	69	26	21

'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S3607. Gene #371: 'TULP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TULP1 MUTATED	1	1	0	0	0	1	0
TULP1 WILD-TYPE	17	7	10	8	36	24	12

'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S3608. Gene #371: 'TULP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TULP1 MUTATED	1	0	0	1	1	0
TULP1 WILD-TYPE	16	32	13	31	15	7

'C14ORF21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S3609. Gene #372: 'C14ORF21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C14ORF21 MUTATED	1	4	1	0
C14ORF21 WILD-TYPE	18	49	29	24

'C14ORF21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S3610. Gene #372: 'C14ORF21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C14ORF21 MUTATED	3	1	2	0
C14ORF21 WILD-TYPE	32	29	32	26

'C14ORF21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0836 (Fisher's exact test), Q value = 1

Table S3611. Gene #372: 'C14ORF21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
C14ORF21 MUTATED	1	0	0	2	0
C14ORF21 WILD-TYPE	28	18	13	7	13

'C14ORF21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S3612. Gene #372: 'C14ORF21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
C14ORF21 MUTATED	2	0	0	1	0
C14ORF21 WILD-TYPE	30	18	12	9	10

'C14ORF21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S3613. Gene #372: 'C14ORF21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C14ORF21 MUTATED	1	1	2	2	0
C14ORF21 WILD-TYPE	25	19	26	23	20

'C14ORF21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3614. Gene #372: 'C14ORF21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C14ORF21 MUTATED	2	3	1
C14ORF21 WILD-TYPE	46	50	17

'C14ORF21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S3615. Gene #372: 'C14ORF21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C14ORF21 MUTATED	1	2	1	2	0
C14ORF21 WILD-TYPE	36	29	16	19	13

'C14ORF21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S3616. Gene #372: 'C14ORF21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C14ORF21 MUTATED	5	0	1
C14ORF21 WILD-TYPE	66	27	20

'C14ORF21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S3617. Gene #372: 'C14ORF21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C14ORF21 MUTATED	0	1	1	0	3	1	0
C14ORF21 WILD-TYPE	18	7	9	8	33	24	12

'C14ORF21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S3618. Gene #372: 'C14ORF21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C14ORF21 MUTATED	0	3	0	2	0	1
C14ORF21 WILD-TYPE	17	29	13	30	16	6

'PPIG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S3619. Gene #373: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PPIG MUTATED	1	0	2	1
PPIG WILD-TYPE	18	53	28	23

'PPIG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S3620. Gene #373: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PPIG MUTATED	1	2	1	0
PPIG WILD-TYPE	34	28	33	26

'PPIG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S3621. Gene #373: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PPIG MUTATED	1	0	1	1	0
PPIG WILD-TYPE	28	18	12	8	13

'PPIG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S3622. Gene #373: 'PPIG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PPIG MUTATED	2	0	1	0	0
PPIG WILD-TYPE	30	18	11	10	10

'PPIG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S3623. Gene #373: 'PPIG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PPIG MUTATED	0	1	0	2	0
PPIG WILD-TYPE	26	19	28	23	20

'PPIG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S3624. Gene #373: 'PPIG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PPIG MUTATED	2	1	0
PPIG WILD-TYPE	46	52	18

'PPIG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S3625. Gene #373: 'PPIG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PPIG MUTATED	1	0	1	1	0
PPIG WILD-TYPE	36	31	16	20	13

'PPIG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3626. Gene #373: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PPIG MUTATED	2	1	0
PPIG WILD-TYPE	69	26	21

'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 1

Table S3627. Gene #373: 'PPIG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PPIG MUTATED	0	0	2	0	0	1	0
PPIG WILD-TYPE	18	8	8	8	36	24	12

'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S3628. Gene #373: 'PPIG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PPIG MUTATED	0	1	0	2	0	0
PPIG WILD-TYPE	17	31	13	30	16	7

'SLC39A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S3629. Gene #374: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC39A4 MUTATED	0	3	1	0
SLC39A4 WILD-TYPE	19	50	29	24

'SLC39A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S3630. Gene #374: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC39A4 MUTATED	2	0	2	0
SLC39A4 WILD-TYPE	33	30	32	26

'SLC39A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S3631. Gene #374: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLC39A4 MUTATED	1	1	0	2	0
SLC39A4 WILD-TYPE	28	17	13	7	13

'SLC39A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S3632. Gene #374: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLC39A4 MUTATED	1	1	0	2	0
SLC39A4 WILD-TYPE	31	17	12	8	10

'SLC39A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S3633. Gene #374: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC39A4 MUTATED	2	0	1	1	0
SLC39A4 WILD-TYPE	24	20	27	24	20

'SLC39A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3634. Gene #374: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC39A4 MUTATED	2	2	0
SLC39A4 WILD-TYPE	46	51	18

'SLC39A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 1

Table S3635. Gene #374: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC39A4 MUTATED	0	1	0	3	0
SLC39A4 WILD-TYPE	37	30	17	18	13

'SLC39A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3636. Gene #374: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC39A4 MUTATED	3	1	0
SLC39A4 WILD-TYPE	68	26	21

'SLC39A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S3637. Gene #374: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC39A4 MUTATED	1	0	1	0	1	1	0
SLC39A4 WILD-TYPE	17	8	9	8	35	24	12

'SLC39A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S3638. Gene #374: 'SLC39A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC39A4 MUTATED	0	1	1	2	0	0
SLC39A4 WILD-TYPE	17	31	12	30	16	7

'CBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S3639. Gene #375: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CBLL1 MUTATED	0	1	3	0
CBLL1 WILD-TYPE	19	52	27	24

'CBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S3640. Gene #375: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CBLL1 MUTATED	2	1	0	1
CBLL1 WILD-TYPE	33	29	34	25

'CBLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S3641. Gene #375: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CBLL1 MUTATED	1	0	1	1	0
CBLL1 WILD-TYPE	28	18	12	8	13

'CBLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S3642. Gene #375: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CBLL1 MUTATED	2	0	1	0	0
CBLL1 WILD-TYPE	30	18	11	10	10

'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S3643. Gene #375: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CBLL1 MUTATED	1	1	0	1	1
CBLL1 WILD-TYPE	25	19	28	24	19

'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S3644. Gene #375: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CBLL1 MUTATED	1	1	2
CBLL1 WILD-TYPE	47	52	16

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S3645. Gene #375: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CBLL1 MUTATED	1	1	0	2	0
CBLL1 WILD-TYPE	36	30	17	19	13

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S3646. Gene #375: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CBLL1 MUTATED	2	0	2
CBLL1 WILD-TYPE	69	27	19

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S3647. Gene #375: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CBLL1 MUTATED	0	0	1	0	1	1	1
CBLL1 WILD-TYPE	18	8	9	8	35	24	11

'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S3648. Gene #375: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CBLL1 MUTATED	0	1	0	1	1	1
CBLL1 WILD-TYPE	17	31	13	31	15	6

'FCGBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S3649. Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FCGBP MUTATED	2	3	6	1
FCGBP WILD-TYPE	17	50	24	23

'FCGBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S3650. Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FCGBP MUTATED	5	2	2	3
FCGBP WILD-TYPE	30	28	32	23

'FCGBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S3651. Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FCGBP MUTATED	5	0	1	2	1
FCGBP WILD-TYPE	24	18	12	7	12

'FCGBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S3652. Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FCGBP MUTATED	7	0	1	1	0
FCGBP WILD-TYPE	25	18	11	9	10

'FCGBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S3653. Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FCGBP MUTATED	1	4	2	4	1
FCGBP WILD-TYPE	25	16	26	21	19

'FCGBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S3654. Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FCGBP MUTATED	5	4	3
FCGBP WILD-TYPE	43	49	15

'FCGBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 1

Table S3655. Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FCGBP MUTATED	2	1	2	3	4
FCGBP WILD-TYPE	35	30	15	18	9

'FCGBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S3656. Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FCGBP MUTATED	7	2	3
FCGBP WILD-TYPE	64	25	18

'FCGBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 1

Table S3657. Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FCGBP MUTATED	2	2	1	0	1	1	4
FCGBP WILD-TYPE	16	6	9	8	35	24	8

Figure S160. Get High-res Image Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FCGBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S3658. Gene #376: 'FCGBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FCGBP MUTATED	2	2	0	4	3	0
FCGBP WILD-TYPE	15	30	13	28	13	7

'MAMSTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S3659. Gene #377: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MAMSTR MUTATED	0	1	1	1
MAMSTR WILD-TYPE	19	52	29	23

'MAMSTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S3660. Gene #377: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MAMSTR MUTATED	1	0	1	1
MAMSTR WILD-TYPE	34	30	33	25

'MAMSTR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S3661. Gene #377: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MAMSTR MUTATED	1	0	0	1	1
MAMSTR WILD-TYPE	28	18	13	8	12

'MAMSTR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S3662. Gene #377: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MAMSTR MUTATED	1	0	0	1	1
MAMSTR WILD-TYPE	31	18	12	9	9

'MAMSTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S3663. Gene #377: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MAMSTR MUTATED	1	1	0	0	1
MAMSTR WILD-TYPE	25	19	28	25	19

'MAMSTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S3664. Gene #377: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MAMSTR MUTATED	1	1	1
MAMSTR WILD-TYPE	47	52	17

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3665. Gene #377: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MAMSTR MUTATED	1	1	0	1	0
MAMSTR WILD-TYPE	36	30	17	20	13

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S3666. Gene #377: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MAMSTR MUTATED	1	1	1
MAMSTR WILD-TYPE	70	26	20

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S3667. Gene #377: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MAMSTR MUTATED	1	0	0	0	0	2	0
MAMSTR WILD-TYPE	17	8	10	8	36	23	12

'MAMSTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S3668. Gene #377: 'MAMSTR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MAMSTR MUTATED	0	1	0	1	1	0
MAMSTR WILD-TYPE	17	31	13	31	15	7

'OR2T33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S3669. Gene #378: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OR2T33 MUTATED	1	1	2	0
OR2T33 WILD-TYPE	18	52	28	24

'OR2T33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S3670. Gene #378: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OR2T33 MUTATED	3	0	1	0
OR2T33 WILD-TYPE	32	30	33	26

'OR2T33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S3671. Gene #378: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OR2T33 MUTATED	1	0	1	2	0
OR2T33 WILD-TYPE	25	20	27	23	20

'OR2T33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S3672. Gene #378: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OR2T33 MUTATED	3	1	0
OR2T33 WILD-TYPE	45	52	18

'OR2T33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S3673. Gene #378: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OR2T33 MUTATED	2	0	0	2	0
OR2T33 WILD-TYPE	35	31	17	19	13

'OR2T33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S3674. Gene #378: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OR2T33 MUTATED	4	0	0
OR2T33 WILD-TYPE	67	27	21

'OR2T33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S3675. Gene #378: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OR2T33 MUTATED	0	0	1	0	1	1	0
OR2T33 WILD-TYPE	18	8	9	8	35	24	12

'OR2T33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S3676. Gene #378: 'OR2T33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OR2T33 MUTATED	0	1	0	2	0	0
OR2T33 WILD-TYPE	17	31	13	30	16	7

'KCNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S3677. Gene #379: 'KCNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KCNB1 MUTATED	2	1	1	1
KCNB1 WILD-TYPE	17	52	29	23

'KCNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S3678. Gene #379: 'KCNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KCNB1 MUTATED	3	1	0	1
KCNB1 WILD-TYPE	32	29	34	25

'KCNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S3679. Gene #379: 'KCNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KCNB1 MUTATED	1	1	0	1	0
KCNB1 WILD-TYPE	28	17	13	8	13

'KCNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3680. Gene #379: 'KCNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KCNB1 MUTATED	2	1	0	0	0
KCNB1 WILD-TYPE	30	17	12	10	10

'KCNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S3681. Gene #379: 'KCNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KCNB1 MUTATED	0	1	0	3	1
KCNB1 WILD-TYPE	26	19	28	22	19

'KCNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S3682. Gene #379: 'KCNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KCNB1 MUTATED	3	1	1
KCNB1 WILD-TYPE	45	52	17

'KCNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S3683. Gene #379: 'KCNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KCNB1 MUTATED	0	1	2	1	1
KCNB1 WILD-TYPE	37	30	15	20	12

'KCNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S3684. Gene #379: 'KCNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KCNB1 MUTATED	2	2	1
KCNB1 WILD-TYPE	69	25	20

'KCNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S3685. Gene #379: 'KCNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KCNB1 MUTATED	2	0	1	1	0	1	0
KCNB1 WILD-TYPE	16	8	9	7	36	24	12

'KCNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S3686. Gene #379: 'KCNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KCNB1 MUTATED	0	0	1	3	1	0
KCNB1 WILD-TYPE	17	32	12	29	15	7

'RREB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S3687. Gene #380: 'RREB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RREB1 MUTATED	1	3	4	2
RREB1 WILD-TYPE	18	50	26	22

'RREB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S3688. Gene #380: 'RREB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RREB1 MUTATED	3	1	3	3
RREB1 WILD-TYPE	32	29	31	23

'RREB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S3689. Gene #380: 'RREB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RREB1 MUTATED	4	0	1	1	1
RREB1 WILD-TYPE	25	18	12	8	12

'RREB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S3690. Gene #380: 'RREB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RREB1 MUTATED	5	1	1	0	0
RREB1 WILD-TYPE	27	17	11	10	10

'RREB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S3691. Gene #380: 'RREB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RREB1 MUTATED	3	1	1	3	2
RREB1 WILD-TYPE	23	19	27	22	18

'RREB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S3692. Gene #380: 'RREB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RREB1 MUTATED	5	4	1
RREB1 WILD-TYPE	43	49	17

'RREB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S3693. Gene #380: 'RREB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RREB1 MUTATED	3	4	2	1	0
RREB1 WILD-TYPE	34	27	15	20	13

'RREB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S3694. Gene #380: 'RREB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RREB1 MUTATED	6	3	1
RREB1 WILD-TYPE	65	24	20

'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S3695. Gene #380: 'RREB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RREB1 MUTATED	0	1	2	0	4	3	0
RREB1 WILD-TYPE	18	7	8	8	32	22	12

'RREB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3696. Gene #380: 'RREB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RREB1 MUTATED	3	2	0	3	2	0
RREB1 WILD-TYPE	14	30	13	29	14	7

'CANT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S3697. Gene #381: 'CANT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CANT1 MUTATED	1	1	1	0
CANT1 WILD-TYPE	18	52	29	24

'CANT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S3698. Gene #381: 'CANT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CANT1 MUTATED	0	1	2	0
CANT1 WILD-TYPE	35	29	32	26

'CANT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S3699. Gene #381: 'CANT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CANT1 MUTATED	1	1	1	0	0
CANT1 WILD-TYPE	25	19	27	25	20

'CANT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S3700. Gene #381: 'CANT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CANT1 MUTATED	1	1	1
CANT1 WILD-TYPE	47	52	17

'CANT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S3701. Gene #381: 'CANT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CANT1 MUTATED	2	0	0	0	1
CANT1 WILD-TYPE	35	31	17	21	12

'CANT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S3702. Gene #381: 'CANT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CANT1 MUTATED	2	0	1
CANT1 WILD-TYPE	69	27	20

'CANT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S3703. Gene #381: 'CANT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CANT1 MUTATED	0	0	0	0	2	1	0
CANT1 WILD-TYPE	18	8	10	8	34	24	12

'CANT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S3704. Gene #381: 'CANT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CANT1 MUTATED	0	2	0	0	1	0
CANT1 WILD-TYPE	17	30	13	32	15	7

'SMARCA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S3705. Gene #382: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SMARCA2 MUTATED	1	1	2	0
SMARCA2 WILD-TYPE	18	52	28	24

'SMARCA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S3706. Gene #382: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SMARCA2 MUTATED	3	1	0	0
SMARCA2 WILD-TYPE	32	29	34	26

'SMARCA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S3707. Gene #382: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SMARCA2 MUTATED	2	0	0	1	0
SMARCA2 WILD-TYPE	27	18	13	8	13

'SMARCA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S3708. Gene #382: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SMARCA2 MUTATED	3	0	0	0	0
SMARCA2 WILD-TYPE	29	18	12	10	10

'SMARCA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S3709. Gene #382: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SMARCA2 MUTATED	0	1	1	2	0
SMARCA2 WILD-TYPE	26	19	27	23	20

'SMARCA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S3710. Gene #382: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SMARCA2 MUTATED	2	1	1
SMARCA2 WILD-TYPE	46	52	17

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S3711. Gene #382: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SMARCA2 MUTATED	0	1	1	1	1
SMARCA2 WILD-TYPE	37	30	16	20	12

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S3712. Gene #382: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SMARCA2 MUTATED	1	1	2
SMARCA2 WILD-TYPE	70	26	19

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S3713. Gene #382: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SMARCA2 MUTATED	0	0	1	0	0	3	0
SMARCA2 WILD-TYPE	18	8	9	8	36	22	12

'SMARCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S3714. Gene #382: 'SMARCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SMARCA2 MUTATED	0	0	0	2	2	0
SMARCA2 WILD-TYPE	17	32	13	30	14	7

'GIGYF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S3715. Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GIGYF2 MUTATED	0	1	1	2
GIGYF2 WILD-TYPE	19	52	29	22

'GIGYF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3716. Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GIGYF2 MUTATED	2	1	0	1
GIGYF2 WILD-TYPE	33	29	34	25

'GIGYF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3717. Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GIGYF2 MUTATED	2	1	0	0	0
GIGYF2 WILD-TYPE	27	17	13	9	13

'GIGYF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3718. Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GIGYF2 MUTATED	2	1	0	0	0
GIGYF2 WILD-TYPE	30	17	12	10	10

'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S3719. Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GIGYF2 MUTATED	1	1	0	0	2
GIGYF2 WILD-TYPE	25	19	28	25	18

'GIGYF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S3720. Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GIGYF2 MUTATED	0	3	1
GIGYF2 WILD-TYPE	48	50	17

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S3721. Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GIGYF2 MUTATED	1	2	0	1	0
GIGYF2 WILD-TYPE	36	29	17	20	13

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S3722. Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GIGYF2 MUTATED	3	0	1
GIGYF2 WILD-TYPE	68	27	20

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S3723. Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GIGYF2 MUTATED	0	0	0	1	1	1	1
GIGYF2 WILD-TYPE	18	8	10	7	35	24	11

'GIGYF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 1

Table S3724. Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GIGYF2 MUTATED	0	1	2	0	0	1
GIGYF2 WILD-TYPE	17	31	11	32	16	6

Figure S161. Get High-res Image Gene #383: 'GIGYF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPP2R5C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S3725. Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PPP2R5C MUTATED	0	2	1	2
PPP2R5C WILD-TYPE	19	51	29	22

'PPP2R5C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S3726. Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PPP2R5C MUTATED	3	1	1	0
PPP2R5C WILD-TYPE	32	29	33	26

'PPP2R5C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 1

Table S3727. Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PPP2R5C MUTATED	1	1	0	3	0
PPP2R5C WILD-TYPE	28	17	13	6	13

Figure S162. Get High-res Image Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PPP2R5C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S3728. Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PPP2R5C MUTATED	3	1	0	1	0
PPP2R5C WILD-TYPE	29	17	12	9	10

'PPP2R5C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S3729. Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PPP2R5C MUTATED	0	1	2	2	0
PPP2R5C WILD-TYPE	26	19	26	23	20

'PPP2R5C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S3730. Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PPP2R5C MUTATED	3	2	0
PPP2R5C WILD-TYPE	45	51	18

'PPP2R5C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S3731. Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PPP2R5C MUTATED	1	1	1	1	1
PPP2R5C WILD-TYPE	36	30	16	20	12

'PPP2R5C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S3732. Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PPP2R5C MUTATED	4	1	0
PPP2R5C WILD-TYPE	67	26	21

'PPP2R5C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S3733. Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PPP2R5C MUTATED	1	0	1	0	2	1	0
PPP2R5C WILD-TYPE	17	8	9	8	34	24	12

'PPP2R5C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S3734. Gene #384: 'PPP2R5C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PPP2R5C MUTATED	0	2	0	3	0	0
PPP2R5C WILD-TYPE	17	30	13	29	16	7

'COPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S3735. Gene #385: 'COPA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
COPA MUTATED	1	1	2	1
COPA WILD-TYPE	18	52	28	23

'COPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S3736. Gene #385: 'COPA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
COPA MUTATED	2	1	2	0
COPA WILD-TYPE	33	29	32	26

'COPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S3737. Gene #385: 'COPA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
COPA MUTATED	2	1	0	2	0
COPA WILD-TYPE	27	17	13	7	13

'COPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S3738. Gene #385: 'COPA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
COPA MUTATED	3	1	0	1	0
COPA WILD-TYPE	29	17	12	9	10

'COPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S3739. Gene #385: 'COPA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
COPA MUTATED	0	0	2	3	0
COPA WILD-TYPE	26	20	26	22	20

'COPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S3740. Gene #385: 'COPA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
COPA MUTATED	3	2	0
COPA WILD-TYPE	45	51	18

'COPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S3741. Gene #385: 'COPA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
COPA MUTATED	2	0	1	2	0
COPA WILD-TYPE	35	31	16	19	13

'COPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S3742. Gene #385: 'COPA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
COPA MUTATED	4	1	0
COPA WILD-TYPE	67	26	21

'COPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S3743. Gene #385: 'COPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
COPA MUTATED	1	0	1	0	3	0	0
COPA WILD-TYPE	17	8	9	8	33	25	12

'COPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S3744. Gene #385: 'COPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
COPA MUTATED	0	2	0	3	0	0
COPA WILD-TYPE	17	30	13	29	16	7

'RCOR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S3745. Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RCOR1 MUTATED	1	3	1	0
RCOR1 WILD-TYPE	18	50	29	24

'RCOR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S3746. Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RCOR1 MUTATED	1	1	3	0
RCOR1 WILD-TYPE	34	29	31	26

'RCOR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S3747. Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RCOR1 MUTATED	0	1	0	1	2
RCOR1 WILD-TYPE	29	17	13	8	11

'RCOR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S3748. Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RCOR1 MUTATED	1	1	1	0	1
RCOR1 WILD-TYPE	31	17	11	10	9

'RCOR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S3749. Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RCOR1 MUTATED	1	0	2	2	0
RCOR1 WILD-TYPE	25	20	26	23	20

'RCOR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 1

Table S3750. Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RCOR1 MUTATED	5	0	0
RCOR1 WILD-TYPE	43	53	18

Figure S163. Get High-res Image Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RCOR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S3751. Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RCOR1 MUTATED	2	0	1	2	0
RCOR1 WILD-TYPE	35	31	16	19	13

'RCOR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S3752. Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RCOR1 MUTATED	3	2	0
RCOR1 WILD-TYPE	68	25	21

'RCOR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S3753. Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RCOR1 MUTATED	2	0	1	0	2	0	0
RCOR1 WILD-TYPE	16	8	9	8	34	25	12

'RCOR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S3754. Gene #386: 'RCOR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RCOR1 MUTATED	0	2	0	3	0	0
RCOR1 WILD-TYPE	17	30	13	29	16	7

'PTCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S3755. Gene #387: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PTCD1 MUTATED	0	3	0	0
PTCD1 WILD-TYPE	19	50	30	24

'PTCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S3756. Gene #387: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PTCD1 MUTATED	1	0	2	0
PTCD1 WILD-TYPE	34	30	32	26

'PTCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S3757. Gene #387: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PTCD1 MUTATED	1	0	2	0	0
PTCD1 WILD-TYPE	25	20	26	25	20

'PTCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S3758. Gene #387: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PTCD1 MUTATED	0	3	0
PTCD1 WILD-TYPE	48	50	18

'PTCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S3759. Gene #387: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PTCD1 MUTATED	1	1	0	0	1
PTCD1 WILD-TYPE	36	30	17	21	12

'PTCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S3760. Gene #387: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PTCD1 MUTATED	2	0	1
PTCD1 WILD-TYPE	69	27	20

'PTCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S3761. Gene #387: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PTCD1 MUTATED	0	0	0	0	1	1	1
PTCD1 WILD-TYPE	18	8	10	8	35	24	11

'PTCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3762. Gene #387: 'PTCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PTCD1 MUTATED	1	1	0	1	0	0
PTCD1 WILD-TYPE	16	31	13	31	16	7

'SOS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S3763. Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SOS1 MUTATED	0	2	3	0
SOS1 WILD-TYPE	19	51	27	24

'SOS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S3764. Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SOS1 MUTATED	3	1	1	0
SOS1 WILD-TYPE	32	29	33	26

'SOS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S3765. Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SOS1 MUTATED	2	0	2	1	0
SOS1 WILD-TYPE	27	18	11	8	13

'SOS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S3766. Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SOS1 MUTATED	3	0	1	0	1
SOS1 WILD-TYPE	29	18	11	10	9

'SOS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S3767. Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SOS1 MUTATED	0	1	2	1	0
SOS1 WILD-TYPE	26	19	26	24	20

'SOS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 1

Table S3768. Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SOS1 MUTATED	2	0	2
SOS1 WILD-TYPE	46	53	16

Figure S164. Get High-res Image Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SOS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S3769. Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SOS1 MUTATED	0	2	0	1	1
SOS1 WILD-TYPE	37	29	17	20	12

'SOS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S3770. Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SOS1 MUTATED	2	0	2
SOS1 WILD-TYPE	69	27	19

'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S3771. Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SOS1 MUTATED	0	0	1	0	0	3	0
SOS1 WILD-TYPE	18	8	9	8	36	22	12

'SOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S3772. Gene #388: 'SOS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SOS1 MUTATED	0	1	0	1	2	0
SOS1 WILD-TYPE	17	31	13	31	14	7

'IPO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3773. Gene #389: 'IPO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IPO4 MUTATED	0	2	1	0
IPO4 WILD-TYPE	19	51	29	24

'IPO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S3774. Gene #389: 'IPO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IPO4 MUTATED	2	1	0	0
IPO4 WILD-TYPE	33	29	34	26

'IPO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S3775. Gene #389: 'IPO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IPO4 MUTATED	1	0	0	2	0
IPO4 WILD-TYPE	25	20	28	23	20

'IPO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S3776. Gene #389: 'IPO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IPO4 MUTATED	2	1	0
IPO4 WILD-TYPE	46	52	18

'IPO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S3777. Gene #389: 'IPO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IPO4 MUTATED	1	0	1	1	0
IPO4 WILD-TYPE	36	31	16	20	13

'IPO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3778. Gene #389: 'IPO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IPO4 MUTATED	2	1	0
IPO4 WILD-TYPE	69	26	21

'IPO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S3779. Gene #389: 'IPO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IPO4 MUTATED	0	0	1	0	1	1	0
IPO4 WILD-TYPE	18	8	9	8	35	24	12

'IPO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S3780. Gene #389: 'IPO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IPO4 MUTATED	0	1	0	2	0	0
IPO4 WILD-TYPE	17	31	13	30	16	7

'KCNA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S3781. Gene #390: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KCNA4 MUTATED	0	6	2	2
KCNA4 WILD-TYPE	19	47	28	22

'KCNA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S3782. Gene #390: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KCNA4 MUTATED	3	3	2	2
KCNA4 WILD-TYPE	32	27	32	24

'KCNA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S3783. Gene #390: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KCNA4 MUTATED	2	0	2	1	1
KCNA4 WILD-TYPE	27	18	11	8	12

'KCNA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S3784. Gene #390: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KCNA4 MUTATED	4	0	1	0	1
KCNA4 WILD-TYPE	28	18	11	10	9

'KCNA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S3785. Gene #390: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KCNA4 MUTATED	2	2	2	3	1
KCNA4 WILD-TYPE	24	18	26	22	19

'KCNA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S3786. Gene #390: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KCNA4 MUTATED	5	3	2
KCNA4 WILD-TYPE	43	50	16

'KCNA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S3787. Gene #390: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KCNA4 MUTATED	2	2	2	2	2
KCNA4 WILD-TYPE	35	29	15	19	11

'KCNA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S3788. Gene #390: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KCNA4 MUTATED	6	3	1
KCNA4 WILD-TYPE	65	24	20

'KCNA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S3789. Gene #390: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KCNA4 MUTATED	2	1	2	0	3	0	2
KCNA4 WILD-TYPE	16	7	8	8	33	25	10

'KCNA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S3790. Gene #390: 'KCNA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KCNA4 MUTATED	1	2	2	4	0	1
KCNA4 WILD-TYPE	16	30	11	28	16	6

'ZNF644 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S3791. Gene #391: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF644 MUTATED	0	3	1	1
ZNF644 WILD-TYPE	19	50	29	23

'ZNF644 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S3792. Gene #391: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF644 MUTATED	3	0	1	1
ZNF644 WILD-TYPE	32	30	33	25

'ZNF644 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S3793. Gene #391: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF644 MUTATED	2	0	0	1	0
ZNF644 WILD-TYPE	27	18	13	8	13

'ZNF644 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S3794. Gene #391: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF644 MUTATED	3	0	0	0	0
ZNF644 WILD-TYPE	29	18	12	10	10

'ZNF644 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S3795. Gene #391: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF644 MUTATED	2	0	1	1	1
ZNF644 WILD-TYPE	24	20	27	24	19

'ZNF644 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3796. Gene #391: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF644 MUTATED	2	2	1
ZNF644 WILD-TYPE	46	51	17

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S3797. Gene #391: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF644 MUTATED	3	0	0	1	1
ZNF644 WILD-TYPE	34	31	17	20	12

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S3798. Gene #391: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF644 MUTATED	4	0	1
ZNF644 WILD-TYPE	67	27	20

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S3799. Gene #391: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF644 MUTATED	0	0	1	1	3	0	0
ZNF644 WILD-TYPE	18	8	9	7	33	25	12

'ZNF644 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3800. Gene #391: 'ZNF644 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF644 MUTATED	1	2	0	1	1	0
ZNF644 WILD-TYPE	16	30	13	31	15	7

'TEP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 1

Table S3801. Gene #392: 'TEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TEP1 MUTATED	0	4	3	2
TEP1 WILD-TYPE	19	49	27	22

'TEP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S3802. Gene #392: 'TEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TEP1 MUTATED	4	3	1	1
TEP1 WILD-TYPE	31	27	33	25

'TEP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S3803. Gene #392: 'TEP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TEP1 MUTATED	2	0	2	2	1
TEP1 WILD-TYPE	27	18	11	7	12

'TEP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S3804. Gene #392: 'TEP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TEP1 MUTATED	4	0	0	1	2
TEP1 WILD-TYPE	28	18	12	9	8

'TEP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S3805. Gene #392: 'TEP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TEP1 MUTATED	1	2	1	4	1
TEP1 WILD-TYPE	25	18	27	21	19

'TEP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S3806. Gene #392: 'TEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TEP1 MUTATED	5	2	2
TEP1 WILD-TYPE	43	51	16

'TEP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S3807. Gene #392: 'TEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TEP1 MUTATED	2	1	3	2	1
TEP1 WILD-TYPE	35	30	14	19	12

'TEP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S3808. Gene #392: 'TEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TEP1 MUTATED	4	2	3
TEP1 WILD-TYPE	67	25	18

'TEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.995 (Fisher's exact test), Q value = 1

Table S3809. Gene #392: 'TEP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TEP1 MUTATED	1	0	1	0	4	2	1
TEP1 WILD-TYPE	17	8	9	8	32	23	11

'TEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S3810. Gene #392: 'TEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TEP1 MUTATED	0	2	0	4	2	1
TEP1 WILD-TYPE	17	30	13	28	14	6

'TMEM184A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S3811. Gene #393: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TMEM184A MUTATED	0	1	1	2
TMEM184A WILD-TYPE	19	52	29	22

'TMEM184A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S3812. Gene #393: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TMEM184A MUTATED	2	1	1	0
TMEM184A WILD-TYPE	33	29	33	26

'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S3813. Gene #393: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TMEM184A MUTATED	1	0	1	2	0
TMEM184A WILD-TYPE	25	20	27	23	20

'TMEM184A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S3814. Gene #393: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TMEM184A MUTATED	3	1	0
TMEM184A WILD-TYPE	45	52	18

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S3815. Gene #393: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TMEM184A MUTATED	2	0	1	1	0
TMEM184A WILD-TYPE	35	31	16	20	13

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3816. Gene #393: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TMEM184A MUTATED	3	1	0
TMEM184A WILD-TYPE	68	26	21

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S3817. Gene #393: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TMEM184A MUTATED	0	0	1	0	3	0	0
TMEM184A WILD-TYPE	18	8	9	8	33	25	12

'TMEM184A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S3818. Gene #393: 'TMEM184A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TMEM184A MUTATED	1	1	0	2	0	0
TMEM184A WILD-TYPE	16	31	13	30	16	7

'NBPF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 1

Table S3819. Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NBPF9 MUTATED	3	0	3	2
NBPF9 WILD-TYPE	16	53	27	22

Figure S165. Get High-res Image Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NBPF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S3820. Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NBPF9 MUTATED	2	1	2	3
NBPF9 WILD-TYPE	33	29	32	23

'NBPF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S3821. Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NBPF9 MUTATED	4	0	1	1	0
NBPF9 WILD-TYPE	25	18	12	8	13

'NBPF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S3822. Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NBPF9 MUTATED	5	0	0	1	0
NBPF9 WILD-TYPE	27	18	12	9	10

'NBPF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S3823. Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NBPF9 MUTATED	1	0	3	3	1
NBPF9 WILD-TYPE	25	20	25	22	19

'NBPF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3824. Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NBPF9 MUTATED	3	4	1
NBPF9 WILD-TYPE	45	49	17

'NBPF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S3825. Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NBPF9 MUTATED	1	3	1	3	0
NBPF9 WILD-TYPE	36	28	16	18	13

'NBPF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3826. Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NBPF9 MUTATED	5	2	1
NBPF9 WILD-TYPE	66	25	20

'NBPF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S3827. Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NBPF9 MUTATED	0	1	2	0	2	2	1
NBPF9 WILD-TYPE	18	7	8	8	34	23	11

'NBPF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3828. Gene #394: 'NBPF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NBPF9 MUTATED	1	2	1	3	1	0
NBPF9 WILD-TYPE	16	30	12	29	15	7

'KIAA1804 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S3829. Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KIAA1804 MUTATED	2	3	2	0
KIAA1804 WILD-TYPE	17	50	28	24

'KIAA1804 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00607 (Fisher's exact test), Q value = 1

Table S3830. Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KIAA1804 MUTATED	6	1	0	0
KIAA1804 WILD-TYPE	29	29	34	26

Figure S166. Get High-res Image Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1804 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S3831. Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KIAA1804 MUTATED	3	1	0	1	1
KIAA1804 WILD-TYPE	26	17	13	8	12

'KIAA1804 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S3832. Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KIAA1804 MUTATED	4	2	0	0	0
KIAA1804 WILD-TYPE	28	16	12	10	10

'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00923 (Fisher's exact test), Q value = 1

Table S3833. Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KIAA1804 MUTATED	5	0	0	2	0
KIAA1804 WILD-TYPE	21	20	28	23	20

Figure S167. Get High-res Image Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1804 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S3834. Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KIAA1804 MUTATED	2	5	0
KIAA1804 WILD-TYPE	46	48	18

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S3835. Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KIAA1804 MUTATED	2	1	1	2	1
KIAA1804 WILD-TYPE	35	30	16	19	12

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S3836. Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KIAA1804 MUTATED	6	1	0
KIAA1804 WILD-TYPE	65	26	21

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S3837. Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KIAA1804 MUTATED	1	1	1	0	1	1	1
KIAA1804 WILD-TYPE	17	7	9	8	35	24	11

'KIAA1804 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S3838. Gene #395: 'KIAA1804 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KIAA1804 MUTATED	2	1	1	2	0	0
KIAA1804 WILD-TYPE	15	31	12	30	16	7

'MAML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 1

Table S3839. Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MAML3 MUTATED	0	1	5	1
MAML3 WILD-TYPE	19	52	25	23

Figure S168. Get High-res Image Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 1

Table S3840. Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MAML3 MUTATED	2	1	0	4
MAML3 WILD-TYPE	33	29	34	22

'MAML3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S3841. Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MAML3 MUTATED	1	0	0	2	1
MAML3 WILD-TYPE	28	18	13	7	12

'MAML3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S3842. Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MAML3 MUTATED	3	0	0	1	0
MAML3 WILD-TYPE	29	18	12	9	10

'MAML3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00711 (Fisher's exact test), Q value = 1

Table S3843. Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MAML3 MUTATED	0	0	0	4	3
MAML3 WILD-TYPE	26	20	28	21	17

Figure S169. Get High-res Image Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAML3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S3844. Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MAML3 MUTATED	4	1	2
MAML3 WILD-TYPE	44	52	16

'MAML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S3845. Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MAML3 MUTATED	1	4	1	1	0
MAML3 WILD-TYPE	36	27	16	20	13

'MAML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 1

Table S3846. Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MAML3 MUTATED	3	3	1
MAML3 WILD-TYPE	68	24	20

'MAML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 1

Table S3847. Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MAML3 MUTATED	0	0	3	0	1	2	1
MAML3 WILD-TYPE	18	8	7	8	35	23	11

'MAML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3848. Gene #396: 'MAML3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MAML3 MUTATED	1	0	1	4	1	0
MAML3 WILD-TYPE	16	32	12	28	15	7

'NBPF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S3849. Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NBPF3 MUTATED	2	7	2	1
NBPF3 WILD-TYPE	17	46	28	23

'NBPF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S3850. Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NBPF3 MUTATED	6	0	5	1
NBPF3 WILD-TYPE	29	30	29	25

Figure S170. Get High-res Image Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NBPF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S3851. Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NBPF3 MUTATED	1	1	3	1	2
NBPF3 WILD-TYPE	28	17	10	8	11

'NBPF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S3852. Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NBPF3 MUTATED	3	3	2	0	0
NBPF3 WILD-TYPE	29	15	10	10	10

'NBPF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S3853. Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NBPF3 MUTATED	4	1	4	2	1
NBPF3 WILD-TYPE	22	19	24	23	19

'NBPF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.062 (Fisher's exact test), Q value = 1

Table S3854. Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NBPF3 MUTATED	3	9	0
NBPF3 WILD-TYPE	45	44	18

'NBPF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S3855. Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NBPF3 MUTATED	3	4	2	2	1
NBPF3 WILD-TYPE	34	27	15	19	12

'NBPF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S3856. Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NBPF3 MUTATED	10	2	0
NBPF3 WILD-TYPE	61	25	21

'NBPF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S3857. Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NBPF3 MUTATED	3	1	1	1	4	2	0
NBPF3 WILD-TYPE	15	7	9	7	32	23	12

'NBPF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S3858. Gene #397: 'NBPF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NBPF3 MUTATED	4	3	2	3	0	0
NBPF3 WILD-TYPE	13	29	11	29	16	7

'TRAF3IP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S3859. Gene #398: 'TRAF3IP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TRAF3IP2 MUTATED	0	3	1	0
TRAF3IP2 WILD-TYPE	19	50	29	24

'TRAF3IP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S3860. Gene #398: 'TRAF3IP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TRAF3IP2 MUTATED	1	2	1	0
TRAF3IP2 WILD-TYPE	34	28	33	26

'TRAF3IP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S3861. Gene #398: 'TRAF3IP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TRAF3IP2 MUTATED	0	1	2	1	0
TRAF3IP2 WILD-TYPE	26	19	26	24	20

'TRAF3IP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S3862. Gene #398: 'TRAF3IP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TRAF3IP2 MUTATED	2	1	1
TRAF3IP2 WILD-TYPE	46	52	17

'TRAF3IP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S3863. Gene #398: 'TRAF3IP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TRAF3IP2 MUTATED	1	1	1	1	0
TRAF3IP2 WILD-TYPE	36	30	16	20	13

'TRAF3IP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S3864. Gene #398: 'TRAF3IP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TRAF3IP2 MUTATED	2	1	1
TRAF3IP2 WILD-TYPE	69	26	20

'TRAF3IP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S3865. Gene #398: 'TRAF3IP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TRAF3IP2 MUTATED	0	0	0	0	2	1	1
TRAF3IP2 WILD-TYPE	18	8	10	8	34	24	11

'TRAF3IP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S3866. Gene #398: 'TRAF3IP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TRAF3IP2 MUTATED	0	2	0	1	0	1
TRAF3IP2 WILD-TYPE	17	30	13	31	16	6

'SMARCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S3867. Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SMARCC2 MUTATED	1	1	2	1
SMARCC2 WILD-TYPE	18	52	28	23

'SMARCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 1

Table S3868. Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SMARCC2 MUTATED	4	0	0	1
SMARCC2 WILD-TYPE	31	30	34	25

Figure S171. Get High-res Image Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMARCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S3869. Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SMARCC2 MUTATED	3	0	0	1	1
SMARCC2 WILD-TYPE	26	18	13	8	12

'SMARCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S3870. Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SMARCC2 MUTATED	3	1	0	1	0
SMARCC2 WILD-TYPE	29	17	12	9	10

'SMARCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S3871. Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SMARCC2 MUTATED	3	0	0	1	1
SMARCC2 WILD-TYPE	23	20	28	24	19

'SMARCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S3872. Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SMARCC2 MUTATED	1	4	0
SMARCC2 WILD-TYPE	47	49	18

'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S3873. Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SMARCC2 MUTATED	0	2	0	2	1
SMARCC2 WILD-TYPE	37	29	17	19	12

'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S3874. Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SMARCC2 MUTATED	5	0	0
SMARCC2 WILD-TYPE	66	27	21

'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S3875. Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SMARCC2 MUTATED	1	1	1	1	1	0	0
SMARCC2 WILD-TYPE	17	7	9	7	35	25	12

'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.033 (Fisher's exact test), Q value = 1

Table S3876. Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SMARCC2 MUTATED	1	0	3	1	0	0
SMARCC2 WILD-TYPE	16	32	10	31	16	7

Figure S172. Get High-res Image Gene #399: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DNAH5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S3877. Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DNAH5 MUTATED	2	4	2	3
DNAH5 WILD-TYPE	17	49	28	21

'DNAH5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S3878. Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DNAH5 MUTATED	4	1	3	3
DNAH5 WILD-TYPE	31	29	31	23

'DNAH5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S3879. Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DNAH5 MUTATED	3	0	0	2	0
DNAH5 WILD-TYPE	26	18	13	7	13

'DNAH5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S3880. Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DNAH5 MUTATED	4	0	0	1	0
DNAH5 WILD-TYPE	28	18	12	9	10

'DNAH5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S3881. Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DNAH5 MUTATED	1	3	3	3	1
DNAH5 WILD-TYPE	25	17	25	22	19

'DNAH5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S3882. Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DNAH5 MUTATED	4	5	2
DNAH5 WILD-TYPE	44	48	16

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 1

Table S3883. Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DNAH5 MUTATED	2	1	3	1	4
DNAH5 WILD-TYPE	35	30	14	20	9

Figure S173. Get High-res Image Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S3884. Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DNAH5 MUTATED	6	2	3
DNAH5 WILD-TYPE	65	25	18

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S3885. Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DNAH5 MUTATED	3	1	1	1	1	1	3
DNAH5 WILD-TYPE	15	7	9	7	35	24	9

'DNAH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S3886. Gene #400: 'DNAH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DNAH5 MUTATED	3	1	1	5	1	0
DNAH5 WILD-TYPE	14	31	12	27	15	7

'C18ORF19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S3887. Gene #401: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C18ORF19 MUTATED	2	1	0	0
C18ORF19 WILD-TYPE	17	52	30	24

'C18ORF19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3888. Gene #401: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C18ORF19 MUTATED	1	1	1	0
C18ORF19 WILD-TYPE	34	29	33	26

'C18ORF19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S3889. Gene #401: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
C18ORF19 MUTATED	1	0	2	0	0
C18ORF19 WILD-TYPE	28	18	11	9	13

'C18ORF19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S3890. Gene #401: 'C18ORF19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
C18ORF19 MUTATED	1	0	2	0	0
C18ORF19 WILD-TYPE	31	18	10	10	10

'KIF20B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 1

Table S3891. Gene #402: 'KIF20B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KIF20B MUTATED	0	1	4	0
KIF20B WILD-TYPE	19	52	26	24

'KIF20B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3892. Gene #402: 'KIF20B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KIF20B MUTATED	2	1	1	1
KIF20B WILD-TYPE	33	29	33	25

'KIF20B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S3893. Gene #402: 'KIF20B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KIF20B MUTATED	1	0	1	2	1
KIF20B WILD-TYPE	25	20	27	23	19

'KIF20B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S3894. Gene #402: 'KIF20B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KIF20B MUTATED	2	3	0
KIF20B WILD-TYPE	46	50	18

'KIF20B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 1

Table S3895. Gene #402: 'KIF20B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KIF20B MUTATED	0	1	0	4	0
KIF20B WILD-TYPE	37	30	17	17	13

Figure S174. Get High-res Image Gene #402: 'KIF20B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIF20B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S3896. Gene #402: 'KIF20B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KIF20B MUTATED	4	1	0
KIF20B WILD-TYPE	67	26	21

'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S3897. Gene #402: 'KIF20B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KIF20B MUTATED	0	0	1	1	1	0	0
KIF20B WILD-TYPE	18	8	9	7	35	25	12

'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S3898. Gene #402: 'KIF20B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KIF20B MUTATED	0	0	2	1	0	0
KIF20B WILD-TYPE	17	32	11	31	16	7

'KDM6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S3899. Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KDM6A MUTATED	2	2	1	2
KDM6A WILD-TYPE	17	51	29	22

'KDM6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 1

Table S3900. Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KDM6A MUTATED	0	3	4	0
KDM6A WILD-TYPE	35	27	30	26

Figure S175. Get High-res Image Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KDM6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S3901. Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KDM6A MUTATED	3	1	0	1	0
KDM6A WILD-TYPE	26	17	13	8	13

'KDM6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S3902. Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KDM6A MUTATED	3	1	0	1	0
KDM6A WILD-TYPE	29	17	12	9	10

'KDM6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S3903. Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KDM6A MUTATED	3	0	1	2	0
KDM6A WILD-TYPE	23	20	27	23	20

'KDM6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S3904. Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KDM6A MUTATED	4	2	0
KDM6A WILD-TYPE	44	51	18

'KDM6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S3905. Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KDM6A MUTATED	2	1	3	0	0
KDM6A WILD-TYPE	35	30	14	21	13

'KDM6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S3906. Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KDM6A MUTATED	4	2	0
KDM6A WILD-TYPE	67	25	21

'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.987 (Fisher's exact test), Q value = 1

Table S3907. Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KDM6A MUTATED	1	0	0	0	3	1	1
KDM6A WILD-TYPE	17	8	10	8	33	24	11

'KDM6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S3908. Gene #403: 'KDM6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KDM6A MUTATED	2	2	0	2	0	0
KDM6A WILD-TYPE	15	30	13	30	16	7

'PRG4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S3909. Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PRG4 MUTATED	1	5	5	1
PRG4 WILD-TYPE	18	48	25	23

'PRG4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S3910. Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PRG4 MUTATED	4	0	5	3
PRG4 WILD-TYPE	31	30	29	23

'PRG4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 1

Table S3911. Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PRG4 MUTATED	1	0	0	1	4
PRG4 WILD-TYPE	28	18	13	8	9

Figure S176. Get High-res Image Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PRG4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S3912. Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PRG4 MUTATED	3	1	0	0	2
PRG4 WILD-TYPE	29	17	12	10	8

'PRG4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S3913. Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PRG4 MUTATED	2	1	4	2	3
PRG4 WILD-TYPE	24	19	24	23	17

'PRG4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S3914. Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PRG4 MUTATED	3	7	2
PRG4 WILD-TYPE	45	46	16

'PRG4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S3915. Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PRG4 MUTATED	3	4	0	4	1
PRG4 WILD-TYPE	34	27	17	17	12

'PRG4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 1

Table S3916. Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PRG4 MUTATED	10	0	2
PRG4 WILD-TYPE	61	27	19

'PRG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S3917. Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PRG4 MUTATED	0	0	1	1	3	4	2
PRG4 WILD-TYPE	18	8	9	7	33	21	10

'PRG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S3918. Gene #404: 'PRG4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PRG4 MUTATED	2	3	2	3	1	0
PRG4 WILD-TYPE	15	29	11	29	15	7

'PHF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 1

Table S3919. Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PHF14 MUTATED	0	0	3	0
PHF14 WILD-TYPE	19	53	27	24

Figure S177. Get High-res Image Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PHF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S3920. Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PHF14 MUTATED	1	2	0	0
PHF14 WILD-TYPE	34	28	34	26

'PHF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S3921. Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PHF14 MUTATED	1	1	0	1	0
PHF14 WILD-TYPE	28	17	13	8	13

'PHF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3922. Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PHF14 MUTATED	2	1	0	0	0
PHF14 WILD-TYPE	30	17	12	10	10

'PHF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 1

Table S3923. Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PHF14 MUTATED	0	0	0	3	0
PHF14 WILD-TYPE	26	20	28	22	20

Figure S178. Get High-res Image Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PHF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S3924. Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PHF14 MUTATED	3	0	0
PHF14 WILD-TYPE	45	53	18

'PHF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S3925. Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PHF14 MUTATED	0	1	0	2	0
PHF14 WILD-TYPE	37	30	17	19	13

'PHF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S3926. Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PHF14 MUTATED	1	2	0
PHF14 WILD-TYPE	70	25	21

'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0893 (Fisher's exact test), Q value = 1

Table S3927. Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PHF14 MUTATED	1	0	1	1	0	0	0
PHF14 WILD-TYPE	17	8	9	7	36	25	12

'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S3928. Gene #405: 'PHF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PHF14 MUTATED	0	0	0	3	0	0
PHF14 WILD-TYPE	17	32	13	29	16	7

'RASGRF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3929. Gene #406: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RASGRF2 MUTATED	1	3	1	1
RASGRF2 WILD-TYPE	18	50	29	23

'RASGRF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S3930. Gene #406: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RASGRF2 MUTATED	2	2	2	0
RASGRF2 WILD-TYPE	33	28	32	26

'RASGRF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S3931. Gene #406: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RASGRF2 MUTATED	2	2	0	1	0
RASGRF2 WILD-TYPE	27	16	13	8	13

'RASGRF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S3932. Gene #406: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RASGRF2 MUTATED	2	2	0	1	0
RASGRF2 WILD-TYPE	30	16	12	9	10

'RASGRF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S3933. Gene #406: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RASGRF2 MUTATED	2	1	1	2	0
RASGRF2 WILD-TYPE	24	19	27	23	20

'RASGRF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3934. Gene #406: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RASGRF2 MUTATED	2	3	1
RASGRF2 WILD-TYPE	46	50	17

'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S3935. Gene #406: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RASGRF2 MUTATED	1	1	1	3	0
RASGRF2 WILD-TYPE	36	30	16	18	13

'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3936. Gene #406: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RASGRF2 MUTATED	4	1	1
RASGRF2 WILD-TYPE	67	26	20

'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S3937. Gene #406: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RASGRF2 MUTATED	0	0	2	0	2	1	1
RASGRF2 WILD-TYPE	18	8	8	8	34	24	11

'RASGRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S3938. Gene #406: 'RASGRF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RASGRF2 MUTATED	0	2	1	2	0	1
RASGRF2 WILD-TYPE	17	30	12	30	16	6

'PNMAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S3939. Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PNMAL1 MUTATED	0	1	2	1
PNMAL1 WILD-TYPE	19	52	28	23

'PNMAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S3940. Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PNMAL1 MUTATED	2	2	0	0
PNMAL1 WILD-TYPE	33	28	34	26

'PNMAL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S3941. Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PNMAL1 MUTATED	2	0	0	1	0
PNMAL1 WILD-TYPE	27	18	13	8	13

'PNMAL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S3942. Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PNMAL1 MUTATED	3	0	0	0	0
PNMAL1 WILD-TYPE	29	18	12	10	10

'PNMAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0789 (Fisher's exact test), Q value = 1

Table S3943. Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PNMAL1 MUTATED	0	2	0	2	0
PNMAL1 WILD-TYPE	26	18	28	23	20

'PNMAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S3944. Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PNMAL1 MUTATED	2	1	1
PNMAL1 WILD-TYPE	46	52	17

'PNMAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 1

Table S3945. Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PNMAL1 MUTATED	0	0	0	3	1
PNMAL1 WILD-TYPE	37	31	17	18	12

Figure S179. Get High-res Image Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PNMAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S3946. Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PNMAL1 MUTATED	1	1	2
PNMAL1 WILD-TYPE	70	26	19

'PNMAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S3947. Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PNMAL1 MUTATED	1	0	1	0	0	1	1
PNMAL1 WILD-TYPE	17	8	9	8	36	24	11

'PNMAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S3948. Gene #407: 'PNMAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PNMAL1 MUTATED	0	0	0	2	1	1
PNMAL1 WILD-TYPE	17	32	13	30	15	6

'FOXP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S3949. Gene #408: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FOXP2 MUTATED	2	5	2	1
FOXP2 WILD-TYPE	17	48	28	23

'FOXP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S3950. Gene #408: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FOXP2 MUTATED	5	2	2	1
FOXP2 WILD-TYPE	30	28	32	25

'FOXP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S3951. Gene #408: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FOXP2 MUTATED	2	1	2	1	1
FOXP2 WILD-TYPE	27	17	11	8	12

'FOXP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S3952. Gene #408: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FOXP2 MUTATED	4	1	2	0	0
FOXP2 WILD-TYPE	28	17	10	10	10

'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S3953. Gene #408: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FOXP2 MUTATED	3	0	1	3	2
FOXP2 WILD-TYPE	23	20	27	22	18

'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S3954. Gene #408: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FOXP2 MUTATED	4	5	0
FOXP2 WILD-TYPE	44	48	18

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S3955. Gene #408: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FOXP2 MUTATED	3	3	2	1	0
FOXP2 WILD-TYPE	34	28	15	20	13

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S3956. Gene #408: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FOXP2 MUTATED	7	2	0
FOXP2 WILD-TYPE	64	25	21

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S3957. Gene #408: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FOXP2 MUTATED	1	0	2	2	2	2	0
FOXP2 WILD-TYPE	17	8	8	6	34	23	12

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S3958. Gene #408: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FOXP2 MUTATED	0	4	2	3	0	0
FOXP2 WILD-TYPE	17	28	11	29	16	7

'CGREF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S3959. Gene #409: 'CGREF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CGREF1 MUTATED	2	4	0	0
CGREF1 WILD-TYPE	17	49	30	24

'CGREF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S3960. Gene #409: 'CGREF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CGREF1 MUTATED	4	1	1	0
CGREF1 WILD-TYPE	31	29	33	26

'CGREF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S3961. Gene #409: 'CGREF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CGREF1 MUTATED	2	0	1	0	0
CGREF1 WILD-TYPE	27	18	12	9	13

'CGREF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S3962. Gene #409: 'CGREF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CGREF1 MUTATED	2	0	1	0	0
CGREF1 WILD-TYPE	30	18	11	10	10

'CGREF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S3963. Gene #409: 'CGREF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CGREF1 MUTATED	3	1	1	1	0
CGREF1 WILD-TYPE	23	19	27	24	20

'CGREF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S3964. Gene #409: 'CGREF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CGREF1 MUTATED	4	2	0
CGREF1 WILD-TYPE	44	51	18

'CGREF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S3965. Gene #409: 'CGREF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CGREF1 MUTATED	3	0	2	0	1
CGREF1 WILD-TYPE	34	31	15	21	12

'CGREF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S3966. Gene #409: 'CGREF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CGREF1 MUTATED	3	2	1
CGREF1 WILD-TYPE	68	25	20

'CGREF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S3967. Gene #409: 'CGREF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CGREF1 MUTATED	2	0	0	0	2	1	1
CGREF1 WILD-TYPE	16	8	10	8	34	24	11

'CGREF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S3968. Gene #409: 'CGREF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CGREF1 MUTATED	2	1	0	3	0	0
CGREF1 WILD-TYPE	15	31	13	29	16	7

'ZNF780A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S3969. Gene #410: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF780A MUTATED	0	3	3	1
ZNF780A WILD-TYPE	19	50	27	23

'ZNF780A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S3970. Gene #410: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF780A MUTATED	3	1	2	1
ZNF780A WILD-TYPE	32	29	32	25

'ZNF780A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S3971. Gene #410: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF780A MUTATED	2	2	1	0	1
ZNF780A WILD-TYPE	27	16	12	9	12

'ZNF780A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3972. Gene #410: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF780A MUTATED	3	1	1	0	1
ZNF780A WILD-TYPE	29	17	11	10	9

'ZNF780A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S3973. Gene #410: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF780A MUTATED	4	0	1	1	1
ZNF780A WILD-TYPE	22	20	27	24	19

'ZNF780A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S3974. Gene #410: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF780A MUTATED	2	5	0
ZNF780A WILD-TYPE	46	48	18

'ZNF780A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S3975. Gene #410: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF780A MUTATED	5	2	0	0	0
ZNF780A WILD-TYPE	32	29	17	21	13

'ZNF780A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S3976. Gene #410: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF780A MUTATED	6	1	0
ZNF780A WILD-TYPE	65	26	21

'ZNF780A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 1

Table S3977. Gene #410: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF780A MUTATED	0	1	0	2	4	0	0
ZNF780A WILD-TYPE	18	7	10	6	32	25	12

'ZNF780A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S3978. Gene #410: 'ZNF780A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF780A MUTATED	2	3	1	1	0	0
ZNF780A WILD-TYPE	15	29	12	31	16	7

'ADC MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3979. Gene #411: 'ADC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ADC MUTATED	0	2	1	0
ADC WILD-TYPE	19	51	29	24

'ADC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S3980. Gene #411: 'ADC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ADC MUTATED	0	0	1	2
ADC WILD-TYPE	35	30	33	24

'ADC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S3981. Gene #411: 'ADC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ADC MUTATED	1	1	0	0	1
ADC WILD-TYPE	25	19	28	25	19

'ADC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S3982. Gene #411: 'ADC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ADC MUTATED	0	2	1
ADC WILD-TYPE	48	51	17

'ADC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S3983. Gene #411: 'ADC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ADC MUTATED	0	1	0	1	1
ADC WILD-TYPE	37	30	17	20	12

'ADC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S3984. Gene #411: 'ADC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ADC MUTATED	2	0	1
ADC WILD-TYPE	69	27	20

'ADC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S3985. Gene #411: 'ADC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ADC MUTATED	0	1	0	0	1	1	0
ADC WILD-TYPE	18	7	10	8	35	24	12

'ADC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S3986. Gene #411: 'ADC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ADC MUTATED	1	0	1	0	1	0
ADC WILD-TYPE	16	32	12	32	15	7

'FHDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S3987. Gene #412: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FHDC1 MUTATED	0	3	1	2
FHDC1 WILD-TYPE	19	50	29	22

'FHDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S3988. Gene #412: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FHDC1 MUTATED	1	2	2	1
FHDC1 WILD-TYPE	34	28	32	25

'FHDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S3989. Gene #412: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FHDC1 MUTATED	0	2	0	1	0
FHDC1 WILD-TYPE	29	16	13	8	13

'FHDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S3990. Gene #412: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FHDC1 MUTATED	1	2	0	0	0
FHDC1 WILD-TYPE	31	16	12	10	10

'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S3991. Gene #412: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FHDC1 MUTATED	1	1	2	2	0
FHDC1 WILD-TYPE	25	19	26	23	20

'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S3992. Gene #412: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FHDC1 MUTATED	4	1	1
FHDC1 WILD-TYPE	44	52	17

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S3993. Gene #412: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FHDC1 MUTATED	1	1	2	2	0
FHDC1 WILD-TYPE	36	30	15	19	13

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S3994. Gene #412: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FHDC1 MUTATED	3	2	1
FHDC1 WILD-TYPE	68	25	20

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S3995. Gene #412: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FHDC1 MUTATED	2	0	2	0	0	1	1
FHDC1 WILD-TYPE	16	8	8	8	36	24	11

'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S3996. Gene #412: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FHDC1 MUTATED	0	2	0	3	0	1
FHDC1 WILD-TYPE	17	30	13	29	16	6

'ZNF709 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S3997. Gene #413: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF709 MUTATED	0	6	3	0
ZNF709 WILD-TYPE	19	47	27	24

'ZNF709 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S3998. Gene #413: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF709 MUTATED	2	3	2	2
ZNF709 WILD-TYPE	33	27	32	24

'ZNF709 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S3999. Gene #413: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF709 MUTATED	1	1	0	2	1
ZNF709 WILD-TYPE	28	17	13	7	12

'ZNF709 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4000. Gene #413: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF709 MUTATED	2	1	1	1	0
ZNF709 WILD-TYPE	30	17	11	9	10

'ZNF709 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S4001. Gene #413: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF709 MUTATED	0	4	2	2	1
ZNF709 WILD-TYPE	26	16	26	23	19

'ZNF709 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S4002. Gene #413: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF709 MUTATED	3	4	2
ZNF709 WILD-TYPE	45	49	16

'ZNF709 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S4003. Gene #413: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF709 MUTATED	1	2	1	3	2
ZNF709 WILD-TYPE	36	29	16	18	11

'ZNF709 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S4004. Gene #413: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF709 MUTATED	5	1	3
ZNF709 WILD-TYPE	66	26	18

'ZNF709 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S4005. Gene #413: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF709 MUTATED	1	2	1	1	1	2	1
ZNF709 WILD-TYPE	17	6	9	7	35	23	11

'ZNF709 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S4006. Gene #413: 'ZNF709 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF709 MUTATED	2	1	1	2	1	2
ZNF709 WILD-TYPE	15	31	12	30	15	5

'OR2J2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S4007. Gene #414: 'OR2J2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OR2J2 MUTATED	1	1	2	0
OR2J2 WILD-TYPE	18	52	28	24

'OR2J2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S4008. Gene #414: 'OR2J2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OR2J2 MUTATED	2	1	1	0
OR2J2 WILD-TYPE	33	29	33	26

'OR2J2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S4009. Gene #414: 'OR2J2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OR2J2 MUTATED	0	1	1	1	1
OR2J2 WILD-TYPE	26	19	27	24	19

'OR2J2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S4010. Gene #414: 'OR2J2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OR2J2 MUTATED	1	2	1
OR2J2 WILD-TYPE	47	51	17

'OR2J2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 1

Table S4011. Gene #414: 'OR2J2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OR2J2 MUTATED	0	1	0	3	0
OR2J2 WILD-TYPE	37	30	17	18	13

'OR2J2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S4012. Gene #414: 'OR2J2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OR2J2 MUTATED	3	0	1
OR2J2 WILD-TYPE	68	27	20

'OR2J2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S4013. Gene #414: 'OR2J2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OR2J2 MUTATED	0	0	1	1	1	0	1
OR2J2 WILD-TYPE	18	8	9	7	35	25	11

'OR2J2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 1

Table S4014. Gene #414: 'OR2J2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OR2J2 MUTATED	0	0	2	1	0	1
OR2J2 WILD-TYPE	17	32	11	31	16	6

Figure S180. Get High-res Image Gene #414: 'OR2J2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S4015. Gene #415: 'PLD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PLD2 MUTATED	0	1	1	1
PLD2 WILD-TYPE	19	52	29	23

'PLD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 1

Table S4016. Gene #415: 'PLD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PLD2 MUTATED	3	0	0	0
PLD2 WILD-TYPE	32	30	34	26

'PLD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S4017. Gene #415: 'PLD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PLD2 MUTATED	1	0	0	1	1
PLD2 WILD-TYPE	28	18	13	8	12

'PLD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4018. Gene #415: 'PLD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PLD2 MUTATED	2	1	0	0	0
PLD2 WILD-TYPE	30	17	12	10	10

'PLD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4019. Gene #415: 'PLD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PLD2 MUTATED	1	0	1	1	0
PLD2 WILD-TYPE	25	20	27	24	20

'PLD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4020. Gene #415: 'PLD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PLD2 MUTATED	1	2	0
PLD2 WILD-TYPE	47	51	18

'PLD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S4021. Gene #415: 'PLD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PLD2 MUTATED	2	0	0	1	0
PLD2 WILD-TYPE	35	31	17	20	13

'PLD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S4022. Gene #415: 'PLD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PLD2 MUTATED	3	0	0
PLD2 WILD-TYPE	68	27	21

'PLD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S4023. Gene #415: 'PLD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PLD2 MUTATED	0	0	1	0	2	0	0
PLD2 WILD-TYPE	18	8	9	8	34	25	12

'PLD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4024. Gene #415: 'PLD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PLD2 MUTATED	1	1	0	1	0	0
PLD2 WILD-TYPE	16	31	13	31	16	7

'SYCP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4025. Gene #416: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SYCP1 MUTATED	1	2	1	1
SYCP1 WILD-TYPE	18	51	29	23

'SYCP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S4026. Gene #416: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SYCP1 MUTATED	1	2	2	0
SYCP1 WILD-TYPE	34	28	32	26

'SYCP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S4027. Gene #416: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SYCP1 MUTATED	2	0	1	0	0
SYCP1 WILD-TYPE	27	18	12	9	13

'SYCP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S4028. Gene #416: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SYCP1 MUTATED	2	0	1	0	0
SYCP1 WILD-TYPE	30	18	11	10	10

'SYCP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S4029. Gene #416: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SYCP1 MUTATED	1	2	1	1	0
SYCP1 WILD-TYPE	25	18	27	24	20

'SYCP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S4030. Gene #416: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SYCP1 MUTATED	3	1	1
SYCP1 WILD-TYPE	45	52	17

'SYCP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S4031. Gene #416: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SYCP1 MUTATED	3	0	1	0	1
SYCP1 WILD-TYPE	34	31	16	21	12

'SYCP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S4032. Gene #416: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SYCP1 MUTATED	2	3	0
SYCP1 WILD-TYPE	69	24	21

'SYCP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S4033. Gene #416: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SYCP1 MUTATED	1	0	1	0	0	1	2
SYCP1 WILD-TYPE	17	8	9	8	36	24	10

'SYCP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S4034. Gene #416: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SYCP1 MUTATED	1	1	0	2	0	1
SYCP1 WILD-TYPE	16	31	13	30	16	6

'RUNX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S4035. Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RUNX2 MUTATED	1	2	3	1
RUNX2 WILD-TYPE	18	51	27	23

'RUNX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4036. Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RUNX2 MUTATED	2	2	2	1
RUNX2 WILD-TYPE	33	28	32	25

'RUNX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 1

Table S4037. Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RUNX2 MUTATED	1	4	0	2	0
RUNX2 WILD-TYPE	28	14	13	7	13

Figure S181. Get High-res Image Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RUNX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S4038. Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RUNX2 MUTATED	2	4	0	1	0
RUNX2 WILD-TYPE	30	14	12	9	10

'RUNX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S4039. Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RUNX2 MUTATED	1	0	2	3	1
RUNX2 WILD-TYPE	25	20	26	22	19

'RUNX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S4040. Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RUNX2 MUTATED	4	3	0
RUNX2 WILD-TYPE	44	50	18

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S4041. Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RUNX2 MUTATED	2	2	1	2	0
RUNX2 WILD-TYPE	35	29	16	19	13

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S4042. Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RUNX2 MUTATED	4	3	0
RUNX2 WILD-TYPE	67	24	21

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S4043. Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RUNX2 MUTATED	2	0	1	2	2	0	0
RUNX2 WILD-TYPE	16	8	9	6	34	25	12

'RUNX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S4044. Gene #417: 'RUNX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RUNX2 MUTATED	0	2	1	4	0	0
RUNX2 WILD-TYPE	17	30	12	28	16	7

'KRTAP5-3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S4045. Gene #418: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KRTAP5-3 MUTATED	2	2	2	1
KRTAP5-3 WILD-TYPE	17	51	28	23

'KRTAP5-3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S4046. Gene #418: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KRTAP5-3 MUTATED	1	1	4	1
KRTAP5-3 WILD-TYPE	34	29	30	25

'KRTAP5-3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S4047. Gene #418: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KRTAP5-3 MUTATED	3	0	0	0	0
KRTAP5-3 WILD-TYPE	26	18	13	9	13

'KRTAP5-3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S4048. Gene #418: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KRTAP5-3 MUTATED	3	0	0	0	0
KRTAP5-3 WILD-TYPE	29	18	12	10	10

'KRTAP5-3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S4049. Gene #418: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KRTAP5-3 MUTATED	3	1	1	1	1
KRTAP5-3 WILD-TYPE	23	19	27	24	19

'KRTAP5-3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S4050. Gene #418: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KRTAP5-3 MUTATED	2	4	1
KRTAP5-3 WILD-TYPE	46	49	17

'KRTAP5-3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S4051. Gene #418: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KRTAP5-3 MUTATED	3	1	0	2	1
KRTAP5-3 WILD-TYPE	34	30	17	19	12

'KRTAP5-3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4052. Gene #418: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KRTAP5-3 MUTATED	5	1	1
KRTAP5-3 WILD-TYPE	66	26	20

'KRTAP5-3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S4053. Gene #418: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KRTAP5-3 MUTATED	1	1	1	1	2	0	1
KRTAP5-3 WILD-TYPE	17	7	9	7	34	25	11

'KRTAP5-3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S4054. Gene #418: 'KRTAP5-3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KRTAP5-3 MUTATED	2	2	1	1	1	0
KRTAP5-3 WILD-TYPE	15	30	12	31	15	7

'SSBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4055. Gene #419: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SSBP3 MUTATED	0	2	1	0
SSBP3 WILD-TYPE	19	51	29	24

'SSBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S4056. Gene #419: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SSBP3 MUTATED	2	0	0	1
SSBP3 WILD-TYPE	33	30	34	25

'SSBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S4057. Gene #419: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SSBP3 MUTATED	1	0	1	0	1
SSBP3 WILD-TYPE	25	20	27	25	19

'SSBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S4058. Gene #419: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SSBP3 MUTATED	0	2	1
SSBP3 WILD-TYPE	48	51	17

'SSBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S4059. Gene #419: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SSBP3 MUTATED	1	1	0	0	1
SSBP3 WILD-TYPE	36	30	17	21	12

'SSBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S4060. Gene #419: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SSBP3 MUTATED	2	0	1
SSBP3 WILD-TYPE	69	27	20

'SSBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S4061. Gene #419: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SSBP3 MUTATED	0	0	0	0	1	0	2
SSBP3 WILD-TYPE	18	8	10	8	35	25	10

'SSBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4062. Gene #419: 'SSBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SSBP3 MUTATED	1	1	0	1	0	0
SSBP3 WILD-TYPE	16	31	13	31	16	7

'ZNF347 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S4063. Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF347 MUTATED	0	3	1	1
ZNF347 WILD-TYPE	19	50	29	23

'ZNF347 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S4064. Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF347 MUTATED	3	2	0	0
ZNF347 WILD-TYPE	32	28	34	26

'ZNF347 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S4065. Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF347 MUTATED	2	0	1	1	0
ZNF347 WILD-TYPE	27	18	12	8	13

'ZNF347 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S4066. Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF347 MUTATED	3	0	1	0	0
ZNF347 WILD-TYPE	29	18	11	10	10

'ZNF347 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 1

Table S4067. Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF347 MUTATED	0	2	0	3	0
ZNF347 WILD-TYPE	26	18	28	22	20

Figure S182. Get High-res Image Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF347 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 1

Table S4068. Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF347 MUTATED	5	0	0
ZNF347 WILD-TYPE	43	53	18

Figure S183. Get High-res Image Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF347 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S4069. Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF347 MUTATED	1	0	2	2	0
ZNF347 WILD-TYPE	36	31	15	19	13

'ZNF347 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S4070. Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF347 MUTATED	3	2	0
ZNF347 WILD-TYPE	68	25	21

'ZNF347 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 1

Table S4071. Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF347 MUTATED	4	0	1	0	0	0	0
ZNF347 WILD-TYPE	14	8	9	8	36	25	12

Figure S184. Get High-res Image Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF347 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S4072. Gene #420: 'ZNF347 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF347 MUTATED	1	0	0	4	0	0
ZNF347 WILD-TYPE	16	32	13	28	16	7

'IPO13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S4073. Gene #421: 'IPO13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
IPO13 MUTATED	0	1	3	0
IPO13 WILD-TYPE	19	52	27	24

'IPO13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S4074. Gene #421: 'IPO13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
IPO13 MUTATED	3	0	1	0
IPO13 WILD-TYPE	32	30	33	26

'IPO13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S4075. Gene #421: 'IPO13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
IPO13 MUTATED	2	1	0	1	0
IPO13 WILD-TYPE	27	17	13	8	13

'IPO13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S4076. Gene #421: 'IPO13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
IPO13 MUTATED	3	0	0	1	0
IPO13 WILD-TYPE	29	18	12	9	10

'IPO13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S4077. Gene #421: 'IPO13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
IPO13 MUTATED	2	0	1	1	0
IPO13 WILD-TYPE	24	20	27	24	20

'IPO13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S4078. Gene #421: 'IPO13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
IPO13 MUTATED	1	2	1
IPO13 WILD-TYPE	47	51	17

'IPO13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S4079. Gene #421: 'IPO13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
IPO13 MUTATED	1	1	0	2	0
IPO13 WILD-TYPE	36	30	17	19	13

'IPO13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S4080. Gene #421: 'IPO13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
IPO13 MUTATED	3	0	1
IPO13 WILD-TYPE	68	27	20

'IPO13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S4081. Gene #421: 'IPO13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
IPO13 MUTATED	0	1	1	0	1	1	0
IPO13 WILD-TYPE	18	7	9	8	35	24	12

'IPO13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S4082. Gene #421: 'IPO13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
IPO13 MUTATED	0	1	1	1	1	0
IPO13 WILD-TYPE	17	31	12	31	15	7

'ACSM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S4083. Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ACSM4 MUTATED	1	0	1	2
ACSM4 WILD-TYPE	18	53	29	22

'ACSM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S4084. Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ACSM4 MUTATED	1	2	1	0
ACSM4 WILD-TYPE	34	28	33	26

'ACSM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 1

Table S4085. Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ACSM4 MUTATED	0	0	1	2	0
ACSM4 WILD-TYPE	29	18	12	7	13

Figure S185. Get High-res Image Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ACSM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S4086. Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ACSM4 MUTATED	1	0	1	1	0
ACSM4 WILD-TYPE	31	18	11	9	10

'ACSM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S4087. Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ACSM4 MUTATED	0	1	1	2	0
ACSM4 WILD-TYPE	26	19	27	23	20

'ACSM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S4088. Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ACSM4 MUTATED	2	1	1
ACSM4 WILD-TYPE	46	52	17

'ACSM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S4089. Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ACSM4 MUTATED	0	1	1	2	0
ACSM4 WILD-TYPE	37	30	16	19	13

'ACSM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S4090. Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ACSM4 MUTATED	2	1	1
ACSM4 WILD-TYPE	69	26	20

'ACSM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S4091. Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ACSM4 MUTATED	0	1	1	0	1	0	1
ACSM4 WILD-TYPE	18	7	9	8	35	25	11

'ACSM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S4092. Gene #422: 'ACSM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ACSM4 MUTATED	1	0	0	2	0	1
ACSM4 WILD-TYPE	16	32	13	30	16	6

'SPAG17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S4093. Gene #423: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SPAG17 MUTATED	1	3	1	3
SPAG17 WILD-TYPE	18	50	29	21

'SPAG17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S4094. Gene #423: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SPAG17 MUTATED	3	2	2	1
SPAG17 WILD-TYPE	32	28	32	25

'SPAG17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 1

Table S4095. Gene #423: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SPAG17 MUTATED	2	0	0	2	1
SPAG17 WILD-TYPE	27	18	13	7	12

'SPAG17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S4096. Gene #423: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SPAG17 MUTATED	3	0	1	1	0
SPAG17 WILD-TYPE	29	18	11	9	10

'SPAG17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S4097. Gene #423: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SPAG17 MUTATED	2	2	1	1	1
SPAG17 WILD-TYPE	24	18	27	24	19

'SPAG17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S4098. Gene #423: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SPAG17 MUTATED	2	3	2
SPAG17 WILD-TYPE	46	50	16

'SPAG17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S4099. Gene #423: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SPAG17 MUTATED	4	0	0	2	1
SPAG17 WILD-TYPE	33	31	17	19	12

'SPAG17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S4100. Gene #423: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SPAG17 MUTATED	5	0	2
SPAG17 WILD-TYPE	66	27	19

'SPAG17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S4101. Gene #423: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SPAG17 MUTATED	1	0	1	1	3	1	0
SPAG17 WILD-TYPE	17	8	9	7	33	24	12

'SPAG17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S4102. Gene #423: 'SPAG17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SPAG17 MUTATED	1	3	0	1	1	1
SPAG17 WILD-TYPE	16	29	13	31	15	6

'OGFOD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S4103. Gene #424: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OGFOD1 MUTATED	0	1	0	2
OGFOD1 WILD-TYPE	19	52	30	22

'OGFOD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4104. Gene #424: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OGFOD1 MUTATED	1	1	1	0
OGFOD1 WILD-TYPE	34	29	33	26

'OGFOD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S4105. Gene #424: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OGFOD1 MUTATED	1	1	0	1	0
OGFOD1 WILD-TYPE	25	19	28	24	20

'OGFOD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S4106. Gene #424: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OGFOD1 MUTATED	2	0	1
OGFOD1 WILD-TYPE	46	53	17

'OGFOD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S4107. Gene #424: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OGFOD1 MUTATED	1	0	1	1	0
OGFOD1 WILD-TYPE	36	31	16	20	13

'OGFOD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S4108. Gene #424: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OGFOD1 MUTATED	1	1	1
OGFOD1 WILD-TYPE	70	26	20

'OGFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S4109. Gene #424: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OGFOD1 MUTATED	0	0	0	0	2	0	1
OGFOD1 WILD-TYPE	18	8	10	8	34	25	11

'OGFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S4110. Gene #424: 'OGFOD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OGFOD1 MUTATED	1	0	0	1	0	1
OGFOD1 WILD-TYPE	16	32	13	31	16	6

'ZADH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S4111. Gene #425: 'ZADH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZADH2 MUTATED	0	1	2	0
ZADH2 WILD-TYPE	19	52	28	24

'ZADH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S4112. Gene #425: 'ZADH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZADH2 MUTATED	1	0	0	2
ZADH2 WILD-TYPE	34	30	34	24

'ZADH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S4113. Gene #425: 'ZADH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZADH2 MUTATED	1	0	0	0	2
ZADH2 WILD-TYPE	28	18	13	9	11

'ZADH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S4114. Gene #425: 'ZADH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZADH2 MUTATED	1	0	1	0	1
ZADH2 WILD-TYPE	31	18	11	10	9

'ZADH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0668 (Fisher's exact test), Q value = 1

Table S4115. Gene #425: 'ZADH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZADH2 MUTATED	0	1	0	0	2
ZADH2 WILD-TYPE	26	19	28	25	18

'ZADH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S4116. Gene #425: 'ZADH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZADH2 MUTATED	0	2	1
ZADH2 WILD-TYPE	48	51	17

'ZADH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S4117. Gene #425: 'ZADH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZADH2 MUTATED	0	2	0	0	1
ZADH2 WILD-TYPE	37	29	17	21	12

'ZADH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S4118. Gene #425: 'ZADH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZADH2 MUTATED	1	0	2
ZADH2 WILD-TYPE	70	27	19

'ZADH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S4119. Gene #425: 'ZADH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZADH2 MUTATED	0	0	0	1	0	2	0
ZADH2 WILD-TYPE	18	8	10	7	36	23	12

'ZADH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0529 (Fisher's exact test), Q value = 1

Table S4120. Gene #425: 'ZADH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZADH2 MUTATED	0	0	1	0	2	0
ZADH2 WILD-TYPE	17	32	12	32	14	7

'G2E3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 1

Table S4121. Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
G2E3 MUTATED	0	0	3	1
G2E3 WILD-TYPE	19	53	27	23

'G2E3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S4122. Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
G2E3 MUTATED	2	1	0	1
G2E3 WILD-TYPE	33	29	34	25

'G2E3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S4123. Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
G2E3 MUTATED	1	0	0	2	1
G2E3 WILD-TYPE	28	18	13	7	12

'G2E3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S4124. Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
G2E3 MUTATED	3	0	0	0	1
G2E3 WILD-TYPE	29	18	12	10	9

'G2E3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S4125. Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
G2E3 MUTATED	0	1	1	1	1
G2E3 WILD-TYPE	26	19	27	24	19

'G2E3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 1

Table S4126. Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
G2E3 MUTATED	2	0	2
G2E3 WILD-TYPE	46	53	16

Figure S186. Get High-res Image Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'G2E3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S4127. Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
G2E3 MUTATED	0	2	0	1	1
G2E3 WILD-TYPE	37	29	17	20	12

'G2E3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S4128. Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
G2E3 MUTATED	1	1	2
G2E3 WILD-TYPE	70	26	19

'G2E3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S4129. Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
G2E3 MUTATED	1	0	1	0	0	2	0
G2E3 WILD-TYPE	17	8	9	8	36	23	12

'G2E3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S4130. Gene #426: 'G2E3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
G2E3 MUTATED	0	0	0	2	2	0
G2E3 WILD-TYPE	17	32	13	30	14	7

'TPTE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S4131. Gene #427: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TPTE2 MUTATED	0	5	1	1
TPTE2 WILD-TYPE	19	48	29	23

'TPTE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S4132. Gene #427: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TPTE2 MUTATED	4	0	2	1
TPTE2 WILD-TYPE	31	30	32	25

'TPTE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S4133. Gene #427: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TPTE2 MUTATED	3	0	1	1	0
TPTE2 WILD-TYPE	26	18	12	8	13

'TPTE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S4134. Gene #427: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TPTE2 MUTATED	4	0	1	0	0
TPTE2 WILD-TYPE	28	18	11	10	10

'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S4135. Gene #427: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TPTE2 MUTATED	1	1	2	2	1
TPTE2 WILD-TYPE	25	19	26	23	19

'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S4136. Gene #427: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TPTE2 MUTATED	3	4	0
TPTE2 WILD-TYPE	45	49	18

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S4137. Gene #427: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TPTE2 MUTATED	4	1	0	2	0
TPTE2 WILD-TYPE	33	30	17	19	13

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S4138. Gene #427: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TPTE2 MUTATED	7	0	0
TPTE2 WILD-TYPE	64	27	21

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S4139. Gene #427: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TPTE2 MUTATED	0	0	3	0	3	1	0
TPTE2 WILD-TYPE	18	8	7	8	33	24	12

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S4140. Gene #427: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TPTE2 MUTATED	1	2	2	2	0	0
TPTE2 WILD-TYPE	16	30	11	30	16	7

'SCLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S4141. Gene #428: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SCLT1 MUTATED	2	1	0	2
SCLT1 WILD-TYPE	17	52	30	22

'SCLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S4142. Gene #428: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SCLT1 MUTATED	0	1	2	2
SCLT1 WILD-TYPE	35	29	32	24

'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S4143. Gene #428: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SCLT1 MUTATED	0	0	2	0	2
SCLT1 WILD-TYPE	26	20	26	25	18

'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S4144. Gene #428: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SCLT1 MUTATED	0	4	0
SCLT1 WILD-TYPE	48	49	18

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S4145. Gene #428: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SCLT1 MUTATED	1	3	0	0	0
SCLT1 WILD-TYPE	36	28	17	21	13

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S4146. Gene #428: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SCLT1 MUTATED	4	0	0
SCLT1 WILD-TYPE	67	27	21

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S4147. Gene #428: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SCLT1 MUTATED	0	1	0	1	1	1	0
SCLT1 WILD-TYPE	18	7	10	7	35	24	12

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S4148. Gene #428: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SCLT1 MUTATED	0	2	2	0	0	0
SCLT1 WILD-TYPE	17	30	11	32	16	7

'EAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S4149. Gene #429: 'EAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EAF2 MUTATED	0	1	1	1
EAF2 WILD-TYPE	19	52	29	23

'EAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S4150. Gene #429: 'EAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EAF2 MUTATED	0	2	1	0
EAF2 WILD-TYPE	35	28	33	26

'EAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 1

Table S4151. Gene #429: 'EAF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EAF2 MUTATED	0	2	0	1	0
EAF2 WILD-TYPE	26	18	28	24	20

'EAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S4152. Gene #429: 'EAF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EAF2 MUTATED	1	1	1
EAF2 WILD-TYPE	47	52	17

'EAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S4153. Gene #429: 'EAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EAF2 MUTATED	1	0	1	0	1
EAF2 WILD-TYPE	36	31	16	21	12

'EAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S4154. Gene #429: 'EAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EAF2 MUTATED	1	2	0
EAF2 WILD-TYPE	70	25	21

'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S4155. Gene #429: 'EAF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EAF2 MUTATED	0	0	0	0	1	1	1
EAF2 WILD-TYPE	18	8	10	8	35	24	11

'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S4156. Gene #429: 'EAF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EAF2 MUTATED	0	1	0	1	0	1
EAF2 WILD-TYPE	17	31	13	31	16	6

'REPS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S4157. Gene #430: 'REPS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
REPS1 MUTATED	0	3	1	0
REPS1 WILD-TYPE	19	50	29	24

'REPS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S4158. Gene #430: 'REPS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
REPS1 MUTATED	3	0	1	0
REPS1 WILD-TYPE	32	30	33	26

'REPS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 1

Table S4159. Gene #430: 'REPS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
REPS1 MUTATED	1	0	0	2	0
REPS1 WILD-TYPE	28	18	13	7	13

'REPS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S4160. Gene #430: 'REPS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
REPS1 MUTATED	2	0	0	1	0
REPS1 WILD-TYPE	30	18	12	9	10

'REPS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S4161. Gene #430: 'REPS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
REPS1 MUTATED	1	0	1	2	0
REPS1 WILD-TYPE	25	20	27	23	20

'REPS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4162. Gene #430: 'REPS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
REPS1 MUTATED	2	2	0
REPS1 WILD-TYPE	46	51	18

'REPS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4163. Gene #430: 'REPS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
REPS1 MUTATED	2	1	0	1	0
REPS1 WILD-TYPE	35	30	17	20	13

'REPS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4164. Gene #430: 'REPS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
REPS1 MUTATED	3	1	0
REPS1 WILD-TYPE	68	26	21

'REPS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S4165. Gene #430: 'REPS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
REPS1 MUTATED	0	0	1	0	2	1	0
REPS1 WILD-TYPE	18	8	9	8	34	24	12

'REPS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S4166. Gene #430: 'REPS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
REPS1 MUTATED	0	2	0	2	0	0
REPS1 WILD-TYPE	17	30	13	30	16	7

'ZNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S4167. Gene #431: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF43 MUTATED	3	3	1	0
ZNF43 WILD-TYPE	16	50	29	24

'ZNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S4168. Gene #431: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF43 MUTATED	3	0	3	1
ZNF43 WILD-TYPE	32	30	31	25

'ZNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S4169. Gene #431: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF43 MUTATED	1	0	2	1	0
ZNF43 WILD-TYPE	28	18	11	8	13

'ZNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S4170. Gene #431: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF43 MUTATED	2	0	2	0	0
ZNF43 WILD-TYPE	30	18	10	10	10

'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S4171. Gene #431: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF43 MUTATED	3	1	1	1	1
ZNF43 WILD-TYPE	23	19	27	24	19

'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S4172. Gene #431: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF43 MUTATED	3	4	0
ZNF43 WILD-TYPE	45	49	18

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S4173. Gene #431: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF43 MUTATED	3	2	1	1	0
ZNF43 WILD-TYPE	34	29	16	20	13

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S4174. Gene #431: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF43 MUTATED	6	1	0
ZNF43 WILD-TYPE	65	26	21

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S4175. Gene #431: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF43 MUTATED	1	1	1	1	3	0	0
ZNF43 WILD-TYPE	17	7	9	7	33	25	12

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S4176. Gene #431: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF43 MUTATED	2	2	1	2	0	0
ZNF43 WILD-TYPE	15	30	12	30	16	7

'PRPF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S4177. Gene #432: 'PRPF4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PRPF4 MUTATED	0	1	1	1
PRPF4 WILD-TYPE	19	52	29	23

'PRPF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4178. Gene #432: 'PRPF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PRPF4 MUTATED	1	1	1	0
PRPF4 WILD-TYPE	34	29	33	26

'PRPF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S4179. Gene #432: 'PRPF4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PRPF4 MUTATED	1	1	0	1	0
PRPF4 WILD-TYPE	25	19	28	24	20

'PRPF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S4180. Gene #432: 'PRPF4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PRPF4 MUTATED	2	0	1
PRPF4 WILD-TYPE	46	53	17

'PRPF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S4181. Gene #432: 'PRPF4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PRPF4 MUTATED	0	0	2	1	0
PRPF4 WILD-TYPE	37	31	15	20	13

'PRPF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S4182. Gene #432: 'PRPF4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PRPF4 MUTATED	1	1	1
PRPF4 WILD-TYPE	70	26	20

'PRPF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S4183. Gene #432: 'PRPF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PRPF4 MUTATED	1	0	0	0	1	0	1
PRPF4 WILD-TYPE	17	8	10	8	35	25	11

'PRPF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S4184. Gene #432: 'PRPF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PRPF4 MUTATED	1	0	0	1	0	1
PRPF4 WILD-TYPE	16	32	13	31	16	6

'CMTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S4185. Gene #433: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CMTM1 MUTATED	0	1	2	0
CMTM1 WILD-TYPE	19	52	28	24

'CMTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S4186. Gene #433: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CMTM1 MUTATED	0	1	1	1
CMTM1 WILD-TYPE	35	29	33	25

'CMTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S4187. Gene #433: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CMTM1 MUTATED	0	1	1	0	1
CMTM1 WILD-TYPE	26	19	27	25	19

'CMTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S4188. Gene #433: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CMTM1 MUTATED	0	2	1
CMTM1 WILD-TYPE	48	51	17

'CMTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4189. Gene #433: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CMTM1 MUTATED	1	1	0	1	0
CMTM1 WILD-TYPE	36	30	17	20	13

'CMTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S4190. Gene #433: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CMTM1 MUTATED	2	0	1
CMTM1 WILD-TYPE	69	27	20

'CMTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S4191. Gene #433: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CMTM1 MUTATED	0	0	0	1	1	0	1
CMTM1 WILD-TYPE	18	8	10	7	35	25	11

'CMTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S4192. Gene #433: 'CMTM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CMTM1 MUTATED	0	1	1	0	0	1
CMTM1 WILD-TYPE	17	31	12	32	16	6

'L1CAM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S4193. Gene #434: 'L1CAM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
L1CAM MUTATED	0	2	3	1
L1CAM WILD-TYPE	19	51	27	23

'L1CAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S4194. Gene #434: 'L1CAM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
L1CAM MUTATED	1	1	2	2
L1CAM WILD-TYPE	34	29	32	24

'L1CAM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S4195. Gene #434: 'L1CAM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
L1CAM MUTATED	0	3	1	0	1
L1CAM WILD-TYPE	29	15	12	9	12

'L1CAM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S4196. Gene #434: 'L1CAM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
L1CAM MUTATED	2	2	0	0	1
L1CAM WILD-TYPE	30	16	12	10	9

'L1CAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S4197. Gene #434: 'L1CAM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
L1CAM MUTATED	2	0	2	1	1
L1CAM WILD-TYPE	24	20	26	24	19

'L1CAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S4198. Gene #434: 'L1CAM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
L1CAM MUTATED	1	4	1
L1CAM WILD-TYPE	47	49	17

'L1CAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S4199. Gene #434: 'L1CAM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
L1CAM MUTATED	1	3	1	1	0
L1CAM WILD-TYPE	36	28	16	20	13

'L1CAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4200. Gene #434: 'L1CAM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
L1CAM MUTATED	4	1	1
L1CAM WILD-TYPE	67	26	20

'L1CAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 1

Table S4201. Gene #434: 'L1CAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
L1CAM MUTATED	1	1	2	0	0	2	0
L1CAM WILD-TYPE	17	7	8	8	36	23	12

'L1CAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S4202. Gene #434: 'L1CAM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
L1CAM MUTATED	1	3	0	1	1	0
L1CAM WILD-TYPE	16	29	13	31	15	7

'MMP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S4203. Gene #435: 'MMP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MMP14 MUTATED	0	1	1	2
MMP14 WILD-TYPE	19	52	29	22

'MMP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S4204. Gene #435: 'MMP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MMP14 MUTATED	2	0	1	1
MMP14 WILD-TYPE	33	30	33	25

'MMP14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 1

Table S4205. Gene #435: 'MMP14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MMP14 MUTATED	1	0	0	2	0
MMP14 WILD-TYPE	28	18	13	7	13

'MMP14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S4206. Gene #435: 'MMP14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MMP14 MUTATED	2	0	0	1	0
MMP14 WILD-TYPE	30	18	12	9	10

'MMP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S4207. Gene #435: 'MMP14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MMP14 MUTATED	1	0	0	2	1
MMP14 WILD-TYPE	25	20	28	23	19

'MMP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S4208. Gene #435: 'MMP14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MMP14 MUTATED	3	0	1
MMP14 WILD-TYPE	45	53	17

'MMP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S4209. Gene #435: 'MMP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MMP14 MUTATED	1	0	1	1	1
MMP14 WILD-TYPE	36	31	16	20	12

'MMP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S4210. Gene #435: 'MMP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MMP14 MUTATED	2	1	1
MMP14 WILD-TYPE	69	26	20

'MMP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S4211. Gene #435: 'MMP14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MMP14 MUTATED	0	0	1	1	2	0	0
MMP14 WILD-TYPE	18	8	9	7	34	25	12

'MMP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S4212. Gene #435: 'MMP14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MMP14 MUTATED	1	0	0	2	1	0
MMP14 WILD-TYPE	16	32	13	30	15	7

'CENPF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S4213. Gene #436: 'CENPF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CENPF MUTATED	1	1	3	0
CENPF WILD-TYPE	18	52	27	24

'CENPF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4214. Gene #436: 'CENPF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CENPF MUTATED	2	1	1	1
CENPF WILD-TYPE	33	29	33	25

'CENPF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S4215. Gene #436: 'CENPF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CENPF MUTATED	1	0	1	2	1
CENPF WILD-TYPE	25	20	27	23	19

'CENPF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S4216. Gene #436: 'CENPF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CENPF MUTATED	2	3	0
CENPF WILD-TYPE	46	50	18

'CENPF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S4217. Gene #436: 'CENPF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CENPF MUTATED	1	1	0	3	0
CENPF WILD-TYPE	36	30	17	18	13

'CENPF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S4218. Gene #436: 'CENPF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CENPF MUTATED	4	1	0
CENPF WILD-TYPE	67	26	21

'CENPF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0513 (Fisher's exact test), Q value = 1

Table S4219. Gene #436: 'CENPF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CENPF MUTATED	1	1	1	1	0	0	0
CENPF WILD-TYPE	17	7	9	7	36	25	12

'CENPF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S4220. Gene #436: 'CENPF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CENPF MUTATED	1	0	1	2	0	0
CENPF WILD-TYPE	16	32	12	30	16	7

'AMAC1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S4221. Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AMAC1L2 MUTATED	1	1	2	2
AMAC1L2 WILD-TYPE	18	52	28	22

'AMAC1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 1

Table S4222. Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AMAC1L2 MUTATED	2	0	0	4
AMAC1L2 WILD-TYPE	33	30	34	22

Figure S187. Get High-res Image Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AMAC1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S4223. Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AMAC1L2 MUTATED	2	0	0	0	2
AMAC1L2 WILD-TYPE	27	18	13	9	11

'AMAC1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S4224. Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AMAC1L2 MUTATED	3	0	0	0	1
AMAC1L2 WILD-TYPE	29	18	12	10	9

'AMAC1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00597 (Fisher's exact test), Q value = 1

Table S4225. Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AMAC1L2 MUTATED	2	0	0	0	4
AMAC1L2 WILD-TYPE	24	20	28	25	16

Figure S188. Get High-res Image Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AMAC1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 1

Table S4226. Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AMAC1L2 MUTATED	0	3	3
AMAC1L2 WILD-TYPE	48	50	15

Figure S189. Get High-res Image Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AMAC1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S4227. Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AMAC1L2 MUTATED	1	4	0	0	1
AMAC1L2 WILD-TYPE	36	27	17	21	12

'AMAC1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S4228. Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AMAC1L2 MUTATED	4	0	2
AMAC1L2 WILD-TYPE	67	27	19

'AMAC1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S4229. Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AMAC1L2 MUTATED	0	1	0	2	1	1	1
AMAC1L2 WILD-TYPE	18	7	10	6	35	24	11

'AMAC1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S4230. Gene #437: 'AMAC1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AMAC1L2 MUTATED	1	1	2	0	2	0
AMAC1L2 WILD-TYPE	16	31	11	32	14	7

'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S4231. Gene #438: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PPARGC1B MUTATED	0	2	2	1
PPARGC1B WILD-TYPE	19	51	28	23

'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S4232. Gene #438: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PPARGC1B MUTATED	1	3	0	1
PPARGC1B WILD-TYPE	34	27	34	25

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S4233. Gene #438: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PPARGC1B MUTATED	0	1	0	3	1
PPARGC1B WILD-TYPE	26	19	28	22	19

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 1

Table S4234. Gene #438: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PPARGC1B MUTATED	3	0	2
PPARGC1B WILD-TYPE	45	53	16

Figure S190. Get High-res Image Gene #438: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 1

Table S4235. Gene #438: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PPARGC1B MUTATED	0	0	1	2	2
PPARGC1B WILD-TYPE	37	31	16	19	11

Figure S191. Get High-res Image Gene #438: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 1

Table S4236. Gene #438: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PPARGC1B MUTATED	1	3	1
PPARGC1B WILD-TYPE	70	24	20

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 1

Table S4237. Gene #438: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PPARGC1B MUTATED	0	0	2	1	1	0	1
PPARGC1B WILD-TYPE	18	8	8	7	35	25	11

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S4238. Gene #438: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PPARGC1B MUTATED	0	0	0	3	1	1
PPARGC1B WILD-TYPE	17	32	13	29	15	6

'ERBB2IP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S4239. Gene #439: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ERBB2IP MUTATED	1	2	2	0
ERBB2IP WILD-TYPE	18	51	28	24

'ERBB2IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S4240. Gene #439: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ERBB2IP MUTATED	2	2	1	0
ERBB2IP WILD-TYPE	33	28	33	26

'ERBB2IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S4241. Gene #439: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ERBB2IP MUTATED	1	2	1	1	0
ERBB2IP WILD-TYPE	25	18	27	24	20

'ERBB2IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S4242. Gene #439: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ERBB2IP MUTATED	1	2	2
ERBB2IP WILD-TYPE	47	51	16

'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S4243. Gene #439: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ERBB2IP MUTATED	2	0	0	2	1
ERBB2IP WILD-TYPE	35	31	17	19	12

'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S4244. Gene #439: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ERBB2IP MUTATED	3	0	2
ERBB2IP WILD-TYPE	68	27	19

'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S4245. Gene #439: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ERBB2IP MUTATED	0	0	1	0	2	1	1
ERBB2IP WILD-TYPE	18	8	9	8	34	24	11

'ERBB2IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S4246. Gene #439: 'ERBB2IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ERBB2IP MUTATED	0	2	0	1	1	1
ERBB2IP WILD-TYPE	17	30	13	31	15	6

'PRF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S4247. Gene #440: 'PRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PRF1 MUTATED	2	2	2	0
PRF1 WILD-TYPE	17	51	28	24

'PRF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S4248. Gene #440: 'PRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PRF1 MUTATED	3	1	0	2
PRF1 WILD-TYPE	32	29	34	24

'PRF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S4249. Gene #440: 'PRF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PRF1 MUTATED	1	1	1	1	1
PRF1 WILD-TYPE	28	17	12	8	12

'PRF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4250. Gene #440: 'PRF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PRF1 MUTATED	3	1	1	0	0
PRF1 WILD-TYPE	29	17	11	10	10

'PRF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S4251. Gene #440: 'PRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PRF1 MUTATED	0	0	1	1	2
PRF1 WILD-TYPE	26	20	27	24	18

'PRF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S4252. Gene #440: 'PRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PRF1 MUTATED	1	2	1
PRF1 WILD-TYPE	47	51	17

'PRF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S4253. Gene #440: 'PRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PRF1 MUTATED	1	2	0	1	0
PRF1 WILD-TYPE	36	29	17	20	13

'PRF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S4254. Gene #440: 'PRF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PRF1 MUTATED	4	0	0
PRF1 WILD-TYPE	67	27	21

'PRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S4255. Gene #440: 'PRF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PRF1 MUTATED	0	0	1	1	1	0	1
PRF1 WILD-TYPE	18	8	9	7	35	25	11

'PRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S4256. Gene #440: 'PRF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PRF1 MUTATED	1	1	1	1	0	0
PRF1 WILD-TYPE	16	31	12	31	16	7

'WNT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S4257. Gene #441: 'WNT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
WNT2 MUTATED	0	3	1	2
WNT2 WILD-TYPE	19	50	29	22

'WNT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4258. Gene #441: 'WNT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
WNT2 MUTATED	2	1	2	1
WNT2 WILD-TYPE	33	29	32	25

'WNT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S4259. Gene #441: 'WNT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
WNT2 MUTATED	1	0	0	2	1
WNT2 WILD-TYPE	28	18	13	7	12

'WNT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S4260. Gene #441: 'WNT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
WNT2 MUTATED	2	0	0	1	1
WNT2 WILD-TYPE	30	18	12	9	9

'WNT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S4261. Gene #441: 'WNT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
WNT2 MUTATED	0	1	3	1	1
WNT2 WILD-TYPE	26	19	25	24	19

'WNT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4262. Gene #441: 'WNT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
WNT2 MUTATED	2	3	1
WNT2 WILD-TYPE	46	50	17

'WNT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S4263. Gene #441: 'WNT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
WNT2 MUTATED	1	1	0	3	1
WNT2 WILD-TYPE	36	30	17	18	12

'WNT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S4264. Gene #441: 'WNT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
WNT2 MUTATED	4	0	2
WNT2 WILD-TYPE	67	27	19

'WNT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S4265. Gene #441: 'WNT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
WNT2 MUTATED	0	0	1	0	2	1	2
WNT2 WILD-TYPE	18	8	9	8	34	24	10

'WNT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S4266. Gene #441: 'WNT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
WNT2 MUTATED	0	3	0	2	0	1
WNT2 WILD-TYPE	17	29	13	30	16	6

'R3HDM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S4267. Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
R3HDM1 MUTATED	1	1	2	1
R3HDM1 WILD-TYPE	18	52	28	23

'R3HDM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S4268. Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
R3HDM1 MUTATED	2	0	3	0
R3HDM1 WILD-TYPE	33	30	31	26

'R3HDM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 1

Table S4269. Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
R3HDM1 MUTATED	0	3	0	1	0
R3HDM1 WILD-TYPE	29	15	13	8	13

Figure S192. Get High-res Image Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'R3HDM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S4270. Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
R3HDM1 MUTATED	1	3	0	0	0
R3HDM1 WILD-TYPE	31	15	12	10	10

'R3HDM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S4271. Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
R3HDM1 MUTATED	2	0	2	1	0
R3HDM1 WILD-TYPE	24	20	26	24	20

'R3HDM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S4272. Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
R3HDM1 MUTATED	1	4	0
R3HDM1 WILD-TYPE	47	49	18

'R3HDM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S4273. Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
R3HDM1 MUTATED	2	1	0	2	0
R3HDM1 WILD-TYPE	35	30	17	19	13

'R3HDM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S4274. Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
R3HDM1 MUTATED	5	0	0
R3HDM1 WILD-TYPE	66	27	21

'R3HDM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S4275. Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
R3HDM1 MUTATED	0	0	1	0	2	1	0
R3HDM1 WILD-TYPE	18	8	9	8	34	24	12

'R3HDM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S4276. Gene #442: 'R3HDM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
R3HDM1 MUTATED	0	3	0	1	0	0
R3HDM1 WILD-TYPE	17	29	13	31	16	7

'THRA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S4277. Gene #443: 'THRA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
THRA MUTATED	0	4	0	0
THRA WILD-TYPE	19	49	30	24

'THRA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S4278. Gene #443: 'THRA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
THRA MUTATED	3	0	1	0
THRA WILD-TYPE	32	30	33	26

'THRA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S4279. Gene #443: 'THRA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
THRA MUTATED	2	0	1	0	0
THRA WILD-TYPE	27	18	12	9	13

'THRA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S4280. Gene #443: 'THRA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
THRA MUTATED	2	0	1	0	0
THRA WILD-TYPE	30	18	11	10	10

'THRA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4281. Gene #443: 'THRA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
THRA MUTATED	1	1	1	1	0
THRA WILD-TYPE	25	19	27	24	20

'THRA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4282. Gene #443: 'THRA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
THRA MUTATED	2	2	0
THRA WILD-TYPE	46	51	18

'THRA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S4283. Gene #443: 'THRA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
THRA MUTATED	1	1	1	0	1
THRA WILD-TYPE	36	30	16	21	12

'THRA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S4284. Gene #443: 'THRA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
THRA MUTATED	2	1	1
THRA WILD-TYPE	69	26	20

'THRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S4285. Gene #443: 'THRA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
THRA MUTATED	1	0	0	0	1	2	0
THRA WILD-TYPE	17	8	10	8	35	23	12

'THRA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S4286. Gene #443: 'THRA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
THRA MUTATED	0	2	0	1	1	0
THRA WILD-TYPE	17	30	13	31	15	7

'MGAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S4287. Gene #444: 'MGAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MGAT2 MUTATED	1	1	0	2
MGAT2 WILD-TYPE	18	52	30	22

'MGAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S4288. Gene #444: 'MGAT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MGAT2 MUTATED	1	1	2	0
MGAT2 WILD-TYPE	34	29	32	26

'MGAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4289. Gene #444: 'MGAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MGAT2 MUTATED	1	1	1	1	0
MGAT2 WILD-TYPE	25	19	27	24	20

'MGAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S4290. Gene #444: 'MGAT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MGAT2 MUTATED	2	1	1
MGAT2 WILD-TYPE	46	52	17

'MGAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S4291. Gene #444: 'MGAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MGAT2 MUTATED	1	0	1	2	0
MGAT2 WILD-TYPE	36	31	16	19	13

'MGAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S4292. Gene #444: 'MGAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MGAT2 MUTATED	2	1	1
MGAT2 WILD-TYPE	69	26	20

'MGAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S4293. Gene #444: 'MGAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MGAT2 MUTATED	2	0	0	0	1	0	1
MGAT2 WILD-TYPE	16	8	10	8	35	25	11

'MGAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S4294. Gene #444: 'MGAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MGAT2 MUTATED	0	1	0	2	0	1
MGAT2 WILD-TYPE	17	31	13	30	16	6

'HMX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S4295. Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HMX2 MUTATED	0	1	2	1
HMX2 WILD-TYPE	19	52	28	23

'HMX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S4296. Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HMX2 MUTATED	2	1	0	1
HMX2 WILD-TYPE	33	29	34	25

'HMX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S4297. Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HMX2 MUTATED	1	1	0	1	0
HMX2 WILD-TYPE	28	17	13	8	13

'HMX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4298. Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HMX2 MUTATED	2	1	0	0	0
HMX2 WILD-TYPE	30	17	12	10	10

'HMX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S4299. Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HMX2 MUTATED	1	0	0	2	1
HMX2 WILD-TYPE	25	20	28	23	19

'HMX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S4300. Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HMX2 MUTATED	2	1	1
HMX2 WILD-TYPE	46	52	17

'HMX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S4301. Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HMX2 MUTATED	0	2	0	1	1
HMX2 WILD-TYPE	37	29	17	20	12

'HMX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S4302. Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HMX2 MUTATED	2	1	1
HMX2 WILD-TYPE	69	26	20

'HMX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 1

Table S4303. Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HMX2 MUTATED	0	1	1	2	0	0	0
HMX2 WILD-TYPE	18	7	9	6	36	25	12

Figure S193. Get High-res Image Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HMX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S4304. Gene #445: 'HMX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HMX2 MUTATED	0	0	1	2	1	0
HMX2 WILD-TYPE	17	32	12	30	15	7

'KRTAP4-8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S4305. Gene #446: 'KRTAP4-8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KRTAP4-8 MUTATED	0	1	1	3
KRTAP4-8 WILD-TYPE	19	52	29	21

'KRTAP4-8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S4306. Gene #446: 'KRTAP4-8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KRTAP4-8 MUTATED	2	0	3	0
KRTAP4-8 WILD-TYPE	33	30	31	26

'KRTAP4-8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S4307. Gene #446: 'KRTAP4-8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KRTAP4-8 MUTATED	3	0	0	1	0
KRTAP4-8 WILD-TYPE	26	18	13	8	13

'KRTAP4-8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S4308. Gene #446: 'KRTAP4-8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KRTAP4-8 MUTATED	4	0	0	0	0
KRTAP4-8 WILD-TYPE	28	18	12	10	10

'KRTAP4-8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S4309. Gene #446: 'KRTAP4-8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KRTAP4-8 MUTATED	1	1	2	1	0
KRTAP4-8 WILD-TYPE	25	19	26	24	20

'KRTAP4-8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S4310. Gene #446: 'KRTAP4-8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KRTAP4-8 MUTATED	2	3	0
KRTAP4-8 WILD-TYPE	46	50	18

'KRTAP4-8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S4311. Gene #446: 'KRTAP4-8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KRTAP4-8 MUTATED	3	0	0	2	0
KRTAP4-8 WILD-TYPE	34	31	17	19	13

'KRTAP4-8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S4312. Gene #446: 'KRTAP4-8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KRTAP4-8 MUTATED	5	0	0
KRTAP4-8 WILD-TYPE	66	27	21

'KRTAP4-8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S4313. Gene #446: 'KRTAP4-8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KRTAP4-8 MUTATED	0	0	1	0	3	1	0
KRTAP4-8 WILD-TYPE	18	8	9	8	33	24	12

'KRTAP4-8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S4314. Gene #446: 'KRTAP4-8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KRTAP4-8 MUTATED	1	2	1	1	0	0
KRTAP4-8 WILD-TYPE	16	30	12	31	16	7

'TBC1D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S4315. Gene #447: 'TBC1D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TBC1D1 MUTATED	0	3	0	1
TBC1D1 WILD-TYPE	19	50	30	23

'TBC1D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S4316. Gene #447: 'TBC1D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TBC1D1 MUTATED	0	1	2	1
TBC1D1 WILD-TYPE	35	29	32	25

'TBC1D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S4317. Gene #447: 'TBC1D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TBC1D1 MUTATED	2	0	1	0	0
TBC1D1 WILD-TYPE	27	18	12	9	13

'TBC1D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S4318. Gene #447: 'TBC1D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TBC1D1 MUTATED	2	0	0	0	1
TBC1D1 WILD-TYPE	30	18	12	10	9

'TBC1D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S4319. Gene #447: 'TBC1D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TBC1D1 MUTATED	1	2	1	0	0
TBC1D1 WILD-TYPE	25	18	27	25	20

'TBC1D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S4320. Gene #447: 'TBC1D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TBC1D1 MUTATED	1	1	2
TBC1D1 WILD-TYPE	47	52	16

'TBC1D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S4321. Gene #447: 'TBC1D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TBC1D1 MUTATED	2	0	0	1	1
TBC1D1 WILD-TYPE	35	31	17	20	12

'TBC1D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S4322. Gene #447: 'TBC1D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TBC1D1 MUTATED	2	0	2
TBC1D1 WILD-TYPE	69	27	19

'TBC1D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S4323. Gene #447: 'TBC1D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TBC1D1 MUTATED	0	0	0	0	3	1	0
TBC1D1 WILD-TYPE	18	8	10	8	33	24	12

'TBC1D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S4324. Gene #447: 'TBC1D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TBC1D1 MUTATED	1	1	0	0	1	1
TBC1D1 WILD-TYPE	16	31	13	32	15	6

'MTR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S4325. Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MTR MUTATED	0	2	3	2
MTR WILD-TYPE	19	51	27	22

'MTR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S4326. Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MTR MUTATED	2	1	2	2
MTR WILD-TYPE	33	29	32	24

'MTR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00574 (Fisher's exact test), Q value = 1

Table S4327. Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MTR MUTATED	1	0	0	3	3
MTR WILD-TYPE	28	18	13	6	10

Figure S194. Get High-res Image Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MTR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S4328. Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MTR MUTATED	3	1	0	1	2
MTR WILD-TYPE	29	17	12	9	8

'MTR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S4329. Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MTR MUTATED	0	2	1	2	2
MTR WILD-TYPE	26	18	27	23	18

'MTR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S4330. Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MTR MUTATED	5	2	0
MTR WILD-TYPE	43	51	18

'MTR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S4331. Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MTR MUTATED	1	2	1	2	1
MTR WILD-TYPE	36	29	16	19	12

'MTR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S4332. Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MTR MUTATED	6	1	0
MTR WILD-TYPE	65	26	21

'MTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S4333. Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MTR MUTATED	1	0	1	1	2	2	0
MTR WILD-TYPE	17	8	9	7	34	23	12

'MTR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S4334. Gene #448: 'MTR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MTR MUTATED	0	2	1	3	1	0
MTR WILD-TYPE	17	30	12	29	15	7

'CCDC103 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S4335. Gene #449: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCDC103 MUTATED	0	1	1	1
CCDC103 WILD-TYPE	19	52	29	23

'CCDC103 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4336. Gene #449: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCDC103 MUTATED	1	1	1	0
CCDC103 WILD-TYPE	34	29	33	26

'CCDC103 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S4337. Gene #449: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCDC103 MUTATED	0	0	1	2	0
CCDC103 WILD-TYPE	26	20	27	23	20

'CCDC103 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S4338. Gene #449: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCDC103 MUTATED	2	1	0
CCDC103 WILD-TYPE	46	52	18

'CCDC103 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4339. Gene #449: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCDC103 MUTATED	1	1	0	1	0
CCDC103 WILD-TYPE	36	30	17	20	13

'CCDC103 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4340. Gene #449: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCDC103 MUTATED	2	1	0
CCDC103 WILD-TYPE	69	26	21

'CCDC103 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S4341. Gene #449: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCDC103 MUTATED	1	1	0	1	0	0	0
CCDC103 WILD-TYPE	17	7	10	7	36	25	12

'CCDC103 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S4342. Gene #449: 'CCDC103 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCDC103 MUTATED	1	0	0	2	0	0
CCDC103 WILD-TYPE	16	32	13	30	16	7

'RBBP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S4343. Gene #450: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RBBP8 MUTATED	0	2	2	1
RBBP8 WILD-TYPE	19	51	28	23

'RBBP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S4344. Gene #450: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RBBP8 MUTATED	2	2	1	0
RBBP8 WILD-TYPE	33	28	33	26

'RBBP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S4345. Gene #450: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RBBP8 MUTATED	2	0	0	2	0
RBBP8 WILD-TYPE	27	18	13	7	13

'RBBP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S4346. Gene #450: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RBBP8 MUTATED	3	0	0	1	0
RBBP8 WILD-TYPE	29	18	12	9	10

'RBBP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S4347. Gene #450: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RBBP8 MUTATED	0	1	2	1	0
RBBP8 WILD-TYPE	26	19	26	24	20

'RBBP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S4348. Gene #450: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RBBP8 MUTATED	2	1	1
RBBP8 WILD-TYPE	46	52	17

'RBBP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4349. Gene #450: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RBBP8 MUTATED	2	1	0	1	0
RBBP8 WILD-TYPE	35	30	17	20	13

'RBBP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S4350. Gene #450: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RBBP8 MUTATED	3	0	1
RBBP8 WILD-TYPE	68	27	20

'RBBP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S4351. Gene #450: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RBBP8 MUTATED	1	1	1	0	0	1	0
RBBP8 WILD-TYPE	17	7	9	8	36	24	12

'RBBP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4352. Gene #450: 'RBBP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RBBP8 MUTATED	1	1	0	1	1	0
RBBP8 WILD-TYPE	16	31	13	31	15	7

'FAM102A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S4353. Gene #451: 'FAM102A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FAM102A MUTATED	1	0	2	1
FAM102A WILD-TYPE	18	53	28	23

'FAM102A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S4354. Gene #451: 'FAM102A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FAM102A MUTATED	2	1	1	0
FAM102A WILD-TYPE	33	29	33	26

'FAM102A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S4355. Gene #451: 'FAM102A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FAM102A MUTATED	1	2	0	1	0
FAM102A WILD-TYPE	28	16	13	8	13

'FAM102A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S4356. Gene #451: 'FAM102A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FAM102A MUTATED	3	1	0	0	0
FAM102A WILD-TYPE	29	17	12	10	10

'FAM102A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S4357. Gene #451: 'FAM102A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FAM102A MUTATED	2	0	0	2	0
FAM102A WILD-TYPE	24	20	28	23	20

'FAM102A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S4358. Gene #451: 'FAM102A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FAM102A MUTATED	3	1	0
FAM102A WILD-TYPE	45	52	18

'FAM102A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S4359. Gene #451: 'FAM102A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FAM102A MUTATED	2	0	1	1	0
FAM102A WILD-TYPE	35	31	16	20	13

'FAM102A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4360. Gene #451: 'FAM102A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FAM102A MUTATED	3	1	0
FAM102A WILD-TYPE	68	26	21

'FAM102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S4361. Gene #451: 'FAM102A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FAM102A MUTATED	1	1	1	0	1	0	0
FAM102A WILD-TYPE	17	7	9	8	35	25	12

'FAM102A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S4362. Gene #451: 'FAM102A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FAM102A MUTATED	1	1	0	2	0	0
FAM102A WILD-TYPE	16	31	13	30	16	7

'FAM18A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4363. Gene #452: 'FAM18A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FAM18A MUTATED	0	2	1	0
FAM18A WILD-TYPE	19	51	29	24

'FAM18A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S4364. Gene #452: 'FAM18A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FAM18A MUTATED	1	0	1	1
FAM18A WILD-TYPE	34	30	33	25

'FAM18A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S4365. Gene #452: 'FAM18A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FAM18A MUTATED	0	0	2	0	1
FAM18A WILD-TYPE	26	20	26	25	19

'FAM18A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S4366. Gene #452: 'FAM18A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FAM18A MUTATED	0	3	0
FAM18A WILD-TYPE	48	50	18

'FAM18A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S4367. Gene #452: 'FAM18A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FAM18A MUTATED	2	1	0	0	0
FAM18A WILD-TYPE	35	30	17	21	13

'FAM18A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S4368. Gene #452: 'FAM18A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FAM18A MUTATED	3	0	0
FAM18A WILD-TYPE	68	27	21

'FAM18A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S4369. Gene #452: 'FAM18A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FAM18A MUTATED	0	0	0	1	2	0	0
FAM18A WILD-TYPE	18	8	10	7	34	25	12

'FAM18A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S4370. Gene #452: 'FAM18A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FAM18A MUTATED	0	2	1	0	0	0
FAM18A WILD-TYPE	17	30	12	32	16	7

'AMAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S4371. Gene #453: 'AMAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AMAC1 MUTATED	1	1	3	2
AMAC1 WILD-TYPE	18	52	27	22

'AMAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S4372. Gene #453: 'AMAC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AMAC1 MUTATED	2	0	2	3
AMAC1 WILD-TYPE	33	30	32	23

'AMAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S4373. Gene #453: 'AMAC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AMAC1 MUTATED	1	1	0	1	0
AMAC1 WILD-TYPE	28	17	13	8	13

'AMAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4374. Gene #453: 'AMAC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AMAC1 MUTATED	2	1	0	0	0
AMAC1 WILD-TYPE	30	17	12	10	10

'AMAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S4375. Gene #453: 'AMAC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AMAC1 MUTATED	1	1	2	2	1
AMAC1 WILD-TYPE	25	19	26	23	19

'AMAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S4376. Gene #453: 'AMAC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AMAC1 MUTATED	2	2	3
AMAC1 WILD-TYPE	46	51	15

'AMAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S4377. Gene #453: 'AMAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AMAC1 MUTATED	2	2	0	1	2
AMAC1 WILD-TYPE	35	29	17	20	11

'AMAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S4378. Gene #453: 'AMAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AMAC1 MUTATED	3	1	3
AMAC1 WILD-TYPE	68	26	18

'AMAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S4379. Gene #453: 'AMAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AMAC1 MUTATED	0	1	2	1	1	1	1
AMAC1 WILD-TYPE	18	7	8	7	35	24	11

'AMAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S4380. Gene #453: 'AMAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AMAC1 MUTATED	1	2	0	2	2	0
AMAC1 WILD-TYPE	16	30	13	30	14	7

'NFATC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0963 (Fisher's exact test), Q value = 1

Table S4381. Gene #454: 'NFATC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NFATC2 MUTATED	2	1	3	0
NFATC2 WILD-TYPE	17	52	27	24

'NFATC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 1

Table S4382. Gene #454: 'NFATC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NFATC2 MUTATED	4	0	0	2
NFATC2 WILD-TYPE	31	30	34	24

'NFATC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S4383. Gene #454: 'NFATC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NFATC2 MUTATED	2	0	0	2	0
NFATC2 WILD-TYPE	27	18	13	7	13

'NFATC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S4384. Gene #454: 'NFATC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NFATC2 MUTATED	3	0	0	1	0
NFATC2 WILD-TYPE	29	18	12	9	10

'NFATC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S4385. Gene #454: 'NFATC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NFATC2 MUTATED	0	0	1	2	3
NFATC2 WILD-TYPE	26	20	27	23	17

'NFATC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S4386. Gene #454: 'NFATC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NFATC2 MUTATED	2	2	2
NFATC2 WILD-TYPE	46	51	16

'NFATC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S4387. Gene #454: 'NFATC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NFATC2 MUTATED	1	4	0	1	0
NFATC2 WILD-TYPE	36	27	17	20	13

'NFATC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S4388. Gene #454: 'NFATC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NFATC2 MUTATED	3	1	2
NFATC2 WILD-TYPE	68	26	19

'NFATC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S4389. Gene #454: 'NFATC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NFATC2 MUTATED	0	0	1	2	1	2	0
NFATC2 WILD-TYPE	18	8	9	6	35	23	12

'NFATC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S4390. Gene #454: 'NFATC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NFATC2 MUTATED	0	0	2	2	2	0
NFATC2 WILD-TYPE	17	32	11	30	14	7

'RNF128 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 1

Table S4391. Gene #455: 'RNF128 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RNF128 MUTATED	1	0	3	1
RNF128 WILD-TYPE	18	53	27	23

'RNF128 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S4392. Gene #455: 'RNF128 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RNF128 MUTATED	1	1	1	2
RNF128 WILD-TYPE	34	29	33	24

'RNF128 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S4393. Gene #455: 'RNF128 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RNF128 MUTATED	0	1	1	2	1
RNF128 WILD-TYPE	26	19	27	23	19

'RNF128 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S4394. Gene #455: 'RNF128 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RNF128 MUTATED	2	1	2
RNF128 WILD-TYPE	46	52	16

'RNF128 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 1

Table S4395. Gene #455: 'RNF128 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RNF128 MUTATED	0	1	0	3	1
RNF128 WILD-TYPE	37	30	17	18	12

'RNF128 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S4396. Gene #455: 'RNF128 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RNF128 MUTATED	2	1	2
RNF128 WILD-TYPE	69	26	19

'RNF128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 1

Table S4397. Gene #455: 'RNF128 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RNF128 MUTATED	0	0	2	1	1	0	1
RNF128 WILD-TYPE	18	8	8	7	35	25	11

'RNF128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S4398. Gene #455: 'RNF128 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RNF128 MUTATED	0	1	0	2	1	1
RNF128 WILD-TYPE	17	31	13	30	15	6

'PCLO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 1

Table S4399. Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PCLO MUTATED	2	0	3	3
PCLO WILD-TYPE	17	53	27	21

Figure S195. Get High-res Image Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCLO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S4400. Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PCLO MUTATED	1	1	2	3
PCLO WILD-TYPE	34	29	32	23

'PCLO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S4401. Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PCLO MUTATED	1	2	0	1	1
PCLO WILD-TYPE	28	16	13	8	12

'PCLO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S4402. Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PCLO MUTATED	2	2	1	0	0
PCLO WILD-TYPE	30	16	11	10	10

'PCLO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S4403. Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PCLO MUTATED	0	2	1	1	3
PCLO WILD-TYPE	26	18	27	24	17

'PCLO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S4404. Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PCLO MUTATED	2	4	1
PCLO WILD-TYPE	46	49	17

'PCLO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S4405. Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PCLO MUTATED	1	3	1	1	1
PCLO WILD-TYPE	36	28	16	20	12

'PCLO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S4406. Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PCLO MUTATED	5	2	0
PCLO WILD-TYPE	66	25	21

'PCLO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 1

Table S4407. Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PCLO MUTATED	1	0	1	2	0	2	1
PCLO WILD-TYPE	17	8	9	6	36	23	11

'PCLO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0777 (Fisher's exact test), Q value = 1

Table S4408. Gene #456: 'PCLO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PCLO MUTATED	0	1	3	2	0	1
PCLO WILD-TYPE	17	31	10	30	16	6

'NCOA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S4409. Gene #457: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NCOA7 MUTATED	0	0	2	1
NCOA7 WILD-TYPE	19	53	28	23

'NCOA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S4410. Gene #457: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NCOA7 MUTATED	0	1	1	1
NCOA7 WILD-TYPE	35	29	33	25

'NCOA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S4411. Gene #457: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NCOA7 MUTATED	0	2	1	0	0
NCOA7 WILD-TYPE	29	16	12	9	13

'NCOA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S4412. Gene #457: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NCOA7 MUTATED	0	2	0	0	1
NCOA7 WILD-TYPE	32	16	12	10	9

'NCOA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S4413. Gene #457: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NCOA7 MUTATED	0	0	1	1	1
NCOA7 WILD-TYPE	26	20	27	24	19

'NCOA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4414. Gene #457: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NCOA7 MUTATED	1	2	0
NCOA7 WILD-TYPE	47	51	18

'NCOA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S4415. Gene #457: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NCOA7 MUTATED	1	2	0	0	0
NCOA7 WILD-TYPE	36	29	17	21	13

'NCOA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4416. Gene #457: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NCOA7 MUTATED	2	1	0
NCOA7 WILD-TYPE	69	26	21

'NCOA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S4417. Gene #457: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NCOA7 MUTATED	0	0	0	1	1	1	0
NCOA7 WILD-TYPE	18	8	10	7	35	24	12

'NCOA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S4418. Gene #457: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NCOA7 MUTATED	0	1	0	1	1	0
NCOA7 WILD-TYPE	17	31	13	31	15	7

'POM121 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4419. Gene #458: 'POM121 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
POM121 MUTATED	1	2	1	1
POM121 WILD-TYPE	18	51	29	23

'POM121 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S4420. Gene #458: 'POM121 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
POM121 MUTATED	1	1	2	1
POM121 WILD-TYPE	34	29	32	25

'POM121 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S4421. Gene #458: 'POM121 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
POM121 MUTATED	1	2	0	1	0
POM121 WILD-TYPE	28	16	13	8	13

'POM121 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S4422. Gene #458: 'POM121 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
POM121 MUTATED	2	2	0	0	0
POM121 WILD-TYPE	30	16	12	10	10

'POM121 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S4423. Gene #458: 'POM121 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
POM121 MUTATED	2	1	0	2	0
POM121 WILD-TYPE	24	19	28	23	20

'POM121 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S4424. Gene #458: 'POM121 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
POM121 MUTATED	3	1	1
POM121 WILD-TYPE	45	52	17

'POM121 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S4425. Gene #458: 'POM121 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
POM121 MUTATED	1	0	1	2	1
POM121 WILD-TYPE	36	31	16	19	12

'POM121 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4426. Gene #458: 'POM121 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
POM121 MUTATED	3	1	1
POM121 WILD-TYPE	68	26	20

'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S4427. Gene #458: 'POM121 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
POM121 MUTATED	1	0	2	0	0	2	0
POM121 WILD-TYPE	17	8	8	8	36	23	12

'POM121 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4428. Gene #458: 'POM121 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
POM121 MUTATED	1	1	0	2	1	0
POM121 WILD-TYPE	16	31	13	30	15	7

'HIST1H2BK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S4429. Gene #459: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HIST1H2BK MUTATED	0	2	0	2
HIST1H2BK WILD-TYPE	19	51	30	22

'HIST1H2BK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S4430. Gene #459: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HIST1H2BK MUTATED	2	0	1	1
HIST1H2BK WILD-TYPE	33	30	33	25

'HIST1H2BK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S4431. Gene #459: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HIST1H2BK MUTATED	1	1	0	1	0
HIST1H2BK WILD-TYPE	28	17	13	8	13

'HIST1H2BK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S4432. Gene #459: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HIST1H2BK MUTATED	1	1	0	1	0
HIST1H2BK WILD-TYPE	31	17	12	9	10

'HIST1H2BK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S4433. Gene #459: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HIST1H2BK MUTATED	2	0	1	0	1
HIST1H2BK WILD-TYPE	24	20	27	25	19

'HIST1H2BK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S4434. Gene #459: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HIST1H2BK MUTATED	2	1	1
HIST1H2BK WILD-TYPE	46	52	17

'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S4435. Gene #459: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HIST1H2BK MUTATED	2	0	0	1	1
HIST1H2BK WILD-TYPE	35	31	17	20	12

'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S4436. Gene #459: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HIST1H2BK MUTATED	2	1	1
HIST1H2BK WILD-TYPE	69	26	20

'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S4437. Gene #459: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HIST1H2BK MUTATED	1	0	0	1	1	1	0
HIST1H2BK WILD-TYPE	17	8	10	7	35	24	12

'HIST1H2BK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S4438. Gene #459: 'HIST1H2BK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HIST1H2BK MUTATED	0	2	0	1	1	0
HIST1H2BK WILD-TYPE	17	30	13	31	15	7

'ZHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S4439. Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZHX3 MUTATED	1	1	3	2
ZHX3 WILD-TYPE	18	52	27	22

'ZHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S4440. Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZHX3 MUTATED	3	3	0	1
ZHX3 WILD-TYPE	32	27	34	25

'ZHX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S4441. Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZHX3 MUTATED	2	0	2	2	0
ZHX3 WILD-TYPE	27	18	11	7	13

'ZHX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S4442. Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZHX3 MUTATED	3	0	1	1	1
ZHX3 WILD-TYPE	29	18	11	9	9

'ZHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S4443. Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZHX3 MUTATED	2	2	0	2	0
ZHX3 WILD-TYPE	24	18	28	23	20

'ZHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S4444. Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZHX3 MUTATED	3	1	2
ZHX3 WILD-TYPE	45	52	16

'ZHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 1

Table S4445. Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZHX3 MUTATED	1	0	0	3	2
ZHX3 WILD-TYPE	36	31	17	18	11

Figure S196. Get High-res Image Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S4446. Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZHX3 MUTATED	2	2	2
ZHX3 WILD-TYPE	69	25	19

'ZHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S4447. Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZHX3 MUTATED	1	0	1	0	1	2	0
ZHX3 WILD-TYPE	17	8	9	8	35	23	12

'ZHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S4448. Gene #460: 'ZHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZHX3 MUTATED	0	1	0	2	2	0
ZHX3 WILD-TYPE	17	31	13	30	14	7

'RGPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S4449. Gene #461: 'RGPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RGPD3 MUTATED	1	6	0	1
RGPD3 WILD-TYPE	18	47	30	23

'RGPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S4450. Gene #461: 'RGPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RGPD3 MUTATED	2	1	5	0
RGPD3 WILD-TYPE	33	29	29	26

'RGPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4451. Gene #461: 'RGPD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RGPD3 MUTATED	2	1	1	0	0
RGPD3 WILD-TYPE	27	17	12	9	13

'RGPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S4452. Gene #461: 'RGPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RGPD3 MUTATED	1	1	1	1	0
RGPD3 WILD-TYPE	31	17	11	9	10

'RGPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S4453. Gene #461: 'RGPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RGPD3 MUTATED	4	1	3	0	0
RGPD3 WILD-TYPE	22	19	25	25	20

'RGPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4454. Gene #461: 'RGPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RGPD3 MUTATED	3	4	1
RGPD3 WILD-TYPE	45	49	17

'RGPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 1

Table S4455. Gene #461: 'RGPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RGPD3 MUTATED	5	0	0	3	0
RGPD3 WILD-TYPE	32	31	17	18	13

'RGPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S4456. Gene #461: 'RGPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RGPD3 MUTATED	7	0	1
RGPD3 WILD-TYPE	64	27	20

'RGPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S4457. Gene #461: 'RGPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RGPD3 MUTATED	0	0	1	0	5	1	1
RGPD3 WILD-TYPE	18	8	9	8	31	24	11

'RGPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0986 (Fisher's exact test), Q value = 1

Table S4458. Gene #461: 'RGPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RGPD3 MUTATED	2	3	2	0	0	1
RGPD3 WILD-TYPE	15	29	11	32	16	6

'ZNF554 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S4459. Gene #462: 'ZNF554 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF554 MUTATED	0	1	1	1
ZNF554 WILD-TYPE	19	52	29	23

'ZNF554 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S4460. Gene #462: 'ZNF554 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF554 MUTATED	1	0	1	1
ZNF554 WILD-TYPE	34	30	33	25

'ZNF554 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S4461. Gene #462: 'ZNF554 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF554 MUTATED	1	0	1	0	1
ZNF554 WILD-TYPE	25	20	27	25	19

'ZNF554 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S4462. Gene #462: 'ZNF554 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF554 MUTATED	0	2	1
ZNF554 WILD-TYPE	48	51	17

'ZNF554 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4463. Gene #462: 'ZNF554 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF554 MUTATED	1	1	0	1	0
ZNF554 WILD-TYPE	36	30	17	20	13

'ZNF554 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S4464. Gene #462: 'ZNF554 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF554 MUTATED	2	0	1
ZNF554 WILD-TYPE	69	27	20

'ZNF554 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S4465. Gene #462: 'ZNF554 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF554 MUTATED	0	1	0	0	1	1	0
ZNF554 WILD-TYPE	18	7	10	8	35	24	12

'ZNF554 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S4466. Gene #462: 'ZNF554 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF554 MUTATED	0	1	1	0	1	0
ZNF554 WILD-TYPE	17	31	12	32	15	7

'RETN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S4467. Gene #463: 'RETN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RETN MUTATED	1	2	0	0
RETN WILD-TYPE	18	51	30	24

'RETN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S4468. Gene #463: 'RETN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RETN MUTATED	1	0	2	0
RETN WILD-TYPE	34	30	32	26

'RETN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S4469. Gene #463: 'RETN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RETN MUTATED	1	0	2	0	0
RETN WILD-TYPE	25	20	26	25	20

'RETN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S4470. Gene #463: 'RETN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RETN MUTATED	0	3	0
RETN WILD-TYPE	48	50	18

'RETN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S4471. Gene #463: 'RETN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RETN MUTATED	2	1	0	0	0
RETN WILD-TYPE	35	30	17	21	13

'RETN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S4472. Gene #463: 'RETN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RETN MUTATED	3	0	0
RETN WILD-TYPE	68	27	21

'RETN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S4473. Gene #463: 'RETN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RETN MUTATED	0	1	0	0	2	0	0
RETN WILD-TYPE	18	7	10	8	34	25	12

'RETN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S4474. Gene #463: 'RETN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RETN MUTATED	0	3	0	0	0	0
RETN WILD-TYPE	17	29	13	32	16	7

'RSC1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S4475. Gene #464: 'RSC1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RSC1A1 MUTATED	0	1	1	1
RSC1A1 WILD-TYPE	19	52	29	23

'RSC1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S4476. Gene #464: 'RSC1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RSC1A1 MUTATED	2	0	0	1
RSC1A1 WILD-TYPE	33	30	34	25

'RSC1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S4477. Gene #464: 'RSC1A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RSC1A1 MUTATED	0	1	0	1	1
RSC1A1 WILD-TYPE	26	19	28	24	19

'RSC1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4478. Gene #464: 'RSC1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RSC1A1 MUTATED	1	2	0
RSC1A1 WILD-TYPE	47	51	18

'RSC1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S4479. Gene #464: 'RSC1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RSC1A1 MUTATED	0	1	0	1	1
RSC1A1 WILD-TYPE	37	30	17	20	12

'RSC1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S4480. Gene #464: 'RSC1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RSC1A1 MUTATED	2	0	1
RSC1A1 WILD-TYPE	69	27	20

'RSC1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S4481. Gene #464: 'RSC1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RSC1A1 MUTATED	0	0	1	0	0	2	0
RSC1A1 WILD-TYPE	18	8	9	8	36	23	12

'RSC1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S4482. Gene #464: 'RSC1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RSC1A1 MUTATED	0	0	1	1	1	0
RSC1A1 WILD-TYPE	17	32	12	31	15	7

'RYR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S4483. Gene #465: 'RYR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RYR2 MUTATED	3	5	4	2
RYR2 WILD-TYPE	16	48	26	22

'RYR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S4484. Gene #465: 'RYR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RYR2 MUTATED	5	2	6	1
RYR2 WILD-TYPE	30	28	28	25

'RYR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S4485. Gene #465: 'RYR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RYR2 MUTATED	3	1	1	2	3
RYR2 WILD-TYPE	26	17	12	7	10

'RYR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S4486. Gene #465: 'RYR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RYR2 MUTATED	4	2	1	1	2
RYR2 WILD-TYPE	28	16	11	9	8

'RYR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S4487. Gene #465: 'RYR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RYR2 MUTATED	4	2	5	2	1
RYR2 WILD-TYPE	22	18	23	23	19

'RYR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S4488. Gene #465: 'RYR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RYR2 MUTATED	7	7	0
RYR2 WILD-TYPE	41	46	18

'RYR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S4489. Gene #465: 'RYR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RYR2 MUTATED	5	3	1	4	1
RYR2 WILD-TYPE	32	28	16	17	12

'RYR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S4490. Gene #465: 'RYR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RYR2 MUTATED	11	3	0
RYR2 WILD-TYPE	60	24	21

'RYR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S4491. Gene #465: 'RYR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RYR2 MUTATED	3	1	1	1	5	1	0
RYR2 WILD-TYPE	15	7	9	7	31	24	12

'RYR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S4492. Gene #465: 'RYR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RYR2 MUTATED	2	5	2	3	0	0
RYR2 WILD-TYPE	15	27	11	29	16	7

'HNRNPCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S4493. Gene #466: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HNRNPCL1 MUTATED	0	4	2	0
HNRNPCL1 WILD-TYPE	19	49	28	24

'HNRNPCL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S4494. Gene #466: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HNRNPCL1 MUTATED	2	2	2	0
HNRNPCL1 WILD-TYPE	33	28	32	26

'HNRNPCL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S4495. Gene #466: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HNRNPCL1 MUTATED	1	0	1	1	1
HNRNPCL1 WILD-TYPE	28	18	12	8	12

'HNRNPCL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S4496. Gene #466: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HNRNPCL1 MUTATED	2	0	2	0	0
HNRNPCL1 WILD-TYPE	30	18	10	10	10

'HNRNPCL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S4497. Gene #466: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HNRNPCL1 MUTATED	1	1	2	2	0
HNRNPCL1 WILD-TYPE	25	19	26	23	20

'HNRNPCL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S4498. Gene #466: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HNRNPCL1 MUTATED	4	2	0
HNRNPCL1 WILD-TYPE	44	51	18

'HNRNPCL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S4499. Gene #466: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HNRNPCL1 MUTATED	2	1	0	3	0
HNRNPCL1 WILD-TYPE	35	30	17	18	13

'HNRNPCL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S4500. Gene #466: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HNRNPCL1 MUTATED	5	1	0
HNRNPCL1 WILD-TYPE	66	26	21

'HNRNPCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 1

Table S4501. Gene #466: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HNRNPCL1 MUTATED	1	0	3	0	1	1	0
HNRNPCL1 WILD-TYPE	17	8	7	8	35	24	12

'HNRNPCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S4502. Gene #466: 'HNRNPCL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HNRNPCL1 MUTATED	3	0	1	2	0	0
HNRNPCL1 WILD-TYPE	14	32	12	30	16	7

'SEPHS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4503. Gene #467: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SEPHS2 MUTATED	1	2	1	1
SEPHS2 WILD-TYPE	18	51	29	23

'SEPHS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S4504. Gene #467: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SEPHS2 MUTATED	1	1	3	0
SEPHS2 WILD-TYPE	34	29	31	26

'SEPHS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S4505. Gene #467: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SEPHS2 MUTATED	2	1	2	0	0
SEPHS2 WILD-TYPE	27	17	11	9	13

'SEPHS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S4506. Gene #467: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SEPHS2 MUTATED	3	1	0	0	1
SEPHS2 WILD-TYPE	29	17	12	10	9

'SEPHS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S4507. Gene #467: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SEPHS2 MUTATED	1	0	3	1	0
SEPHS2 WILD-TYPE	25	20	25	24	20

'SEPHS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S4508. Gene #467: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SEPHS2 MUTATED	1	3	1
SEPHS2 WILD-TYPE	47	50	17

'SEPHS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S4509. Gene #467: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SEPHS2 MUTATED	3	1	1	0	0
SEPHS2 WILD-TYPE	34	30	16	21	13

'SEPHS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4510. Gene #467: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SEPHS2 MUTATED	3	1	1
SEPHS2 WILD-TYPE	68	26	20

'SEPHS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S4511. Gene #467: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SEPHS2 MUTATED	1	0	0	0	3	1	0
SEPHS2 WILD-TYPE	17	8	10	8	33	24	12

'SEPHS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S4512. Gene #467: 'SEPHS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SEPHS2 MUTATED	0	3	0	1	1	0
SEPHS2 WILD-TYPE	17	29	13	31	15	7

'KIAA0020 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 1

Table S4513. Gene #468: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KIAA0020 MUTATED	1	0	2	0
KIAA0020 WILD-TYPE	18	53	28	24

'KIAA0020 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S4514. Gene #468: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KIAA0020 MUTATED	1	0	0	2
KIAA0020 WILD-TYPE	34	30	34	24

'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0994 (Fisher's exact test), Q value = 1

Table S4515. Gene #468: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KIAA0020 MUTATED	0	0	0	1	2
KIAA0020 WILD-TYPE	26	20	28	24	18

'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S4516. Gene #468: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KIAA0020 MUTATED	1	1	1
KIAA0020 WILD-TYPE	47	52	17

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S4517. Gene #468: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KIAA0020 MUTATED	1	2	0	0	0
KIAA0020 WILD-TYPE	36	29	17	21	13

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S4518. Gene #468: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KIAA0020 MUTATED	1	0	2
KIAA0020 WILD-TYPE	70	27	19

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S4519. Gene #468: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KIAA0020 MUTATED	0	0	0	0	0	3	0
KIAA0020 WILD-TYPE	18	8	10	8	36	22	12

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S4520. Gene #468: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KIAA0020 MUTATED	0	0	0	1	2	0
KIAA0020 WILD-TYPE	17	32	13	31	14	7

'ACVR2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S4521. Gene #469: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ACVR2A MUTATED	0	0	2	1
ACVR2A WILD-TYPE	19	53	28	23

'ACVR2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S4522. Gene #469: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ACVR2A MUTATED	1	0	0	2
ACVR2A WILD-TYPE	34	30	34	24

'ACVR2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S4523. Gene #469: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ACVR2A MUTATED	0	0	0	2	1
ACVR2A WILD-TYPE	26	20	28	23	19

'ACVR2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S4524. Gene #469: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ACVR2A MUTATED	2	1	0
ACVR2A WILD-TYPE	46	52	18

'ACVR2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S4525. Gene #469: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ACVR2A MUTATED	0	2	0	1	0
ACVR2A WILD-TYPE	37	29	17	20	13

'ACVR2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4526. Gene #469: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ACVR2A MUTATED	2	1	0
ACVR2A WILD-TYPE	69	26	21

'ACVR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 1

Table S4527. Gene #469: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ACVR2A MUTATED	0	0	2	0	0	1	0
ACVR2A WILD-TYPE	18	8	8	8	36	24	12

'ACVR2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S4528. Gene #469: 'ACVR2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ACVR2A MUTATED	0	0	1	2	0	0
ACVR2A WILD-TYPE	17	32	12	30	16	7

'CCDC158 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 1

Table S4529. Gene #470: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCDC158 MUTATED	0	0	2	2
CCDC158 WILD-TYPE	19	53	28	22

'CCDC158 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S4530. Gene #470: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCDC158 MUTATED	2	1	0	1
CCDC158 WILD-TYPE	33	29	34	25

'CCDC158 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S4531. Gene #470: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CCDC158 MUTATED	1	0	0	1	1
CCDC158 WILD-TYPE	28	18	13	8	12

'CCDC158 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S4532. Gene #470: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CCDC158 MUTATED	3	0	0	0	0
CCDC158 WILD-TYPE	29	18	12	10	10

'CCDC158 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S4533. Gene #470: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCDC158 MUTATED	0	0	0	2	2
CCDC158 WILD-TYPE	26	20	28	23	18

'CCDC158 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S4534. Gene #470: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCDC158 MUTATED	2	1	1
CCDC158 WILD-TYPE	46	52	17

'CCDC158 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S4535. Gene #470: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCDC158 MUTATED	0	2	1	1	0
CCDC158 WILD-TYPE	37	29	16	20	13

'CCDC158 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4536. Gene #470: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCDC158 MUTATED	3	1	0
CCDC158 WILD-TYPE	68	26	21

'CCDC158 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S4537. Gene #470: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCDC158 MUTATED	0	0	1	0	1	1	1
CCDC158 WILD-TYPE	18	8	9	8	35	24	11

'CCDC158 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S4538. Gene #470: 'CCDC158 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCDC158 MUTATED	1	0	1	2	0	0
CCDC158 WILD-TYPE	16	32	12	30	16	7

'FTH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S4539. Gene #471: 'FTH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FTH1 MUTATED	0	1	1	1
FTH1 WILD-TYPE	19	52	29	23

'FTH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S4540. Gene #471: 'FTH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FTH1 MUTATED	0	0	1	2
FTH1 WILD-TYPE	35	30	33	24

'FTH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S4541. Gene #471: 'FTH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FTH1 MUTATED	0	1	1	0	1
FTH1 WILD-TYPE	26	19	27	25	19

'FTH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 1

Table S4542. Gene #471: 'FTH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FTH1 MUTATED	0	1	2
FTH1 WILD-TYPE	48	52	16

'FTH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S4543. Gene #471: 'FTH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FTH1 MUTATED	0	2	0	0	1
FTH1 WILD-TYPE	37	29	17	21	12

'FTH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S4544. Gene #471: 'FTH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FTH1 MUTATED	1	0	2
FTH1 WILD-TYPE	70	27	19

'FTH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S4545. Gene #471: 'FTH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FTH1 MUTATED	0	0	0	0	0	3	0
FTH1 WILD-TYPE	18	8	10	8	36	22	12

'FTH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S4546. Gene #471: 'FTH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FTH1 MUTATED	0	1	0	0	2	0
FTH1 WILD-TYPE	17	31	13	32	14	7

'BCKDHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S4547. Gene #472: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BCKDHA MUTATED	0	3	0	0
BCKDHA WILD-TYPE	19	50	30	24

'BCKDHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S4548. Gene #472: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BCKDHA MUTATED	2	0	1	0
BCKDHA WILD-TYPE	33	30	33	26

'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4549. Gene #472: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BCKDHA MUTATED	1	0	1	1	0
BCKDHA WILD-TYPE	25	20	27	24	20

'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4550. Gene #472: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BCKDHA MUTATED	1	2	0
BCKDHA WILD-TYPE	47	51	18

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S4551. Gene #472: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BCKDHA MUTATED	2	0	1	0	0
BCKDHA WILD-TYPE	35	31	16	21	13

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S4552. Gene #472: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BCKDHA MUTATED	3	0	0
BCKDHA WILD-TYPE	68	27	21

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S4553. Gene #472: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BCKDHA MUTATED	0	1	0	0	2	0	0
BCKDHA WILD-TYPE	18	7	10	8	34	25	12

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S4554. Gene #472: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BCKDHA MUTATED	0	2	0	1	0	0
BCKDHA WILD-TYPE	17	30	13	31	16	7

'SLC34A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4555. Gene #473: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC34A2 MUTATED	1	2	1	1
SLC34A2 WILD-TYPE	18	51	29	23

'SLC34A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S4556. Gene #473: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC34A2 MUTATED	3	1	1	0
SLC34A2 WILD-TYPE	32	29	33	26

'SLC34A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 1

Table S4557. Gene #473: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLC34A2 MUTATED	0	1	1	2	0
SLC34A2 WILD-TYPE	29	17	12	7	13

'SLC34A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S4558. Gene #473: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLC34A2 MUTATED	1	1	1	1	0
SLC34A2 WILD-TYPE	31	17	11	9	10

'SLC34A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S4559. Gene #473: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC34A2 MUTATED	1	1	2	1	0
SLC34A2 WILD-TYPE	25	19	26	24	20

'SLC34A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4560. Gene #473: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC34A2 MUTATED	2	2	1
SLC34A2 WILD-TYPE	46	51	17

'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S4561. Gene #473: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC34A2 MUTATED	3	0	0	2	0
SLC34A2 WILD-TYPE	34	31	17	19	13

'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S4562. Gene #473: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC34A2 MUTATED	4	0	1
SLC34A2 WILD-TYPE	67	27	20

'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S4563. Gene #473: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC34A2 MUTATED	0	0	2	0	2	0	1
SLC34A2 WILD-TYPE	18	8	8	8	34	25	11

'SLC34A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S4564. Gene #473: 'SLC34A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC34A2 MUTATED	1	2	0	1	0	1
SLC34A2 WILD-TYPE	16	30	13	31	16	6

'RAB11FIP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S4565. Gene #474: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RAB11FIP5 MUTATED	0	2	0	1
RAB11FIP5 WILD-TYPE	19	51	30	23

'RAB11FIP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S4566. Gene #474: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RAB11FIP5 MUTATED	2	0	1	0
RAB11FIP5 WILD-TYPE	33	30	33	26

'RAB11FIP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4567. Gene #474: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
RAB11FIP5 MUTATED	2	1	0	0	0
RAB11FIP5 WILD-TYPE	27	17	13	9	13

'RAB11FIP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4568. Gene #474: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
RAB11FIP5 MUTATED	2	1	0	0	0
RAB11FIP5 WILD-TYPE	30	17	12	10	10

'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S4569. Gene #474: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RAB11FIP5 MUTATED	2	0	0	0	1
RAB11FIP5 WILD-TYPE	24	20	28	25	19

'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4570. Gene #474: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RAB11FIP5 MUTATED	1	2	0
RAB11FIP5 WILD-TYPE	47	51	18

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S4571. Gene #474: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RAB11FIP5 MUTATED	2	1	0	0	0
RAB11FIP5 WILD-TYPE	35	30	17	21	13

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S4572. Gene #474: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RAB11FIP5 MUTATED	3	0	0
RAB11FIP5 WILD-TYPE	68	27	21

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S4573. Gene #474: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RAB11FIP5 MUTATED	0	0	0	0	1	2	0
RAB11FIP5 WILD-TYPE	18	8	10	8	35	23	12

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S4574. Gene #474: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RAB11FIP5 MUTATED	0	2	1	0	0	0
RAB11FIP5 WILD-TYPE	17	30	12	32	16	7

'ATP6V1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S4575. Gene #475: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ATP6V1A MUTATED	0	0	1	2
ATP6V1A WILD-TYPE	19	53	29	22

'ATP6V1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S4576. Gene #475: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ATP6V1A MUTATED	1	0	1	1
ATP6V1A WILD-TYPE	34	30	33	25

'ATP6V1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S4577. Gene #475: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ATP6V1A MUTATED	1	1	0	0	1
ATP6V1A WILD-TYPE	25	19	28	25	19

'ATP6V1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S4578. Gene #475: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ATP6V1A MUTATED	0	3	0
ATP6V1A WILD-TYPE	48	50	18

'ATP6V1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4579. Gene #475: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ATP6V1A MUTATED	1	1	0	1	0
ATP6V1A WILD-TYPE	36	30	17	20	13

'ATP6V1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S4580. Gene #475: 'ATP6V1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ATP6V1A MUTATED	3	0	0
ATP6V1A WILD-TYPE	68	27	21

'TMEM41B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S4581. Gene #476: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TMEM41B MUTATED	0	2	0	1
TMEM41B WILD-TYPE	19	51	30	23

'TMEM41B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S4582. Gene #476: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TMEM41B MUTATED	2	0	1	0
TMEM41B WILD-TYPE	33	30	33	26

'TMEM41B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S4583. Gene #476: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TMEM41B MUTATED	2	0	1	0	0
TMEM41B WILD-TYPE	27	18	12	9	13

'TMEM41B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S4584. Gene #476: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TMEM41B MUTATED	1	0	1	1	0
TMEM41B WILD-TYPE	31	18	11	9	10

'TMEM41B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4585. Gene #476: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TMEM41B MUTATED	1	0	1	1	0
TMEM41B WILD-TYPE	25	20	27	24	20

'TMEM41B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S4586. Gene #476: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TMEM41B MUTATED	2	1	0
TMEM41B WILD-TYPE	46	52	18

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S4587. Gene #476: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TMEM41B MUTATED	1	0	0	2	0
TMEM41B WILD-TYPE	36	31	17	19	13

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S4588. Gene #476: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TMEM41B MUTATED	3	0	0
TMEM41B WILD-TYPE	68	27	21

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S4589. Gene #476: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TMEM41B MUTATED	1	0	1	0	1	0	0
TMEM41B WILD-TYPE	17	8	9	8	35	25	12

'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S4590. Gene #476: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TMEM41B MUTATED	1	0	1	1	0	0
TMEM41B WILD-TYPE	16	32	12	31	16	7

'GIGYF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S4591. Gene #477: 'GIGYF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GIGYF1 MUTATED	1	1	1	0
GIGYF1 WILD-TYPE	18	52	29	24

'GIGYF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4592. Gene #477: 'GIGYF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GIGYF1 MUTATED	1	1	1	0
GIGYF1 WILD-TYPE	34	29	33	26

'GIGYF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S4593. Gene #477: 'GIGYF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GIGYF1 MUTATED	0	0	1	2	0
GIGYF1 WILD-TYPE	26	20	27	23	20

'GIGYF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S4594. Gene #477: 'GIGYF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GIGYF1 MUTATED	2	1	0
GIGYF1 WILD-TYPE	46	52	18

'GIGYF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S4595. Gene #477: 'GIGYF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GIGYF1 MUTATED	0	1	1	1	0
GIGYF1 WILD-TYPE	37	30	16	20	13

'GIGYF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4596. Gene #477: 'GIGYF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GIGYF1 MUTATED	2	1	0
GIGYF1 WILD-TYPE	69	26	21

'GIGYF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 1

Table S4597. Gene #477: 'GIGYF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GIGYF1 MUTATED	1	1	1	0	0	0	0
GIGYF1 WILD-TYPE	17	7	9	8	36	25	12

'GIGYF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S4598. Gene #477: 'GIGYF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GIGYF1 MUTATED	0	1	0	2	0	0
GIGYF1 WILD-TYPE	17	31	13	30	16	7

'EPB41L4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S4599. Gene #478: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EPB41L4B MUTATED	1	2	1	0
EPB41L4B WILD-TYPE	18	51	29	24

'EPB41L4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S4600. Gene #478: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EPB41L4B MUTATED	3	0	1	0
EPB41L4B WILD-TYPE	32	30	33	26

'EPB41L4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S4601. Gene #478: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EPB41L4B MUTATED	2	0	0	1	0
EPB41L4B WILD-TYPE	24	20	28	24	20

'EPB41L4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S4602. Gene #478: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EPB41L4B MUTATED	2	1	0
EPB41L4B WILD-TYPE	46	52	18

'EPB41L4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S4603. Gene #478: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EPB41L4B MUTATED	2	0	0	1	0
EPB41L4B WILD-TYPE	35	31	17	20	13

'EPB41L4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S4604. Gene #478: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EPB41L4B MUTATED	3	0	0
EPB41L4B WILD-TYPE	68	27	21

'EPB41L4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S4605. Gene #478: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EPB41L4B MUTATED	1	0	1	0	1	0	0
EPB41L4B WILD-TYPE	17	8	9	8	35	25	12

'EPB41L4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S4606. Gene #478: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EPB41L4B MUTATED	2	0	0	1	0	0
EPB41L4B WILD-TYPE	15	32	13	31	16	7

'EPHX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S4607. Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EPHX1 MUTATED	1	1	2	0
EPHX1 WILD-TYPE	18	52	28	24

'EPHX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S4608. Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EPHX1 MUTATED	1	0	2	1
EPHX1 WILD-TYPE	34	30	32	25

'EPHX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 1

Table S4609. Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EPHX1 MUTATED	0	0	2	1	0
EPHX1 WILD-TYPE	29	18	11	8	13

Figure S197. Get High-res Image Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S4610. Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EPHX1 MUTATED	1	0	2	0	0
EPHX1 WILD-TYPE	31	18	10	10	10

'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S4611. Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EPHX1 MUTATED	0	0	2	2	0
EPHX1 WILD-TYPE	26	20	26	23	20

'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S4612. Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EPHX1 MUTATED	3	1	0
EPHX1 WILD-TYPE	45	52	18

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S4613. Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EPHX1 MUTATED	0	3	0	1	0
EPHX1 WILD-TYPE	37	28	17	20	13

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4614. Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EPHX1 MUTATED	3	1	0
EPHX1 WILD-TYPE	68	26	21

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 1

Table S4615. Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EPHX1 MUTATED	0	1	2	0	0	1	0
EPHX1 WILD-TYPE	18	7	8	8	36	24	12

Figure S198. Get High-res Image Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S4616. Gene #479: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EPHX1 MUTATED	1	1	0	2	0	0
EPHX1 WILD-TYPE	16	31	13	30	16	7

'LUZP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S4617. Gene #480: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LUZP1 MUTATED	0	3	0	0
LUZP1 WILD-TYPE	19	50	30	24

'LUZP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 1

Table S4618. Gene #480: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LUZP1 MUTATED	3	0	0	0
LUZP1 WILD-TYPE	32	30	34	26

'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4619. Gene #480: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LUZP1 MUTATED	1	0	1	1	0
LUZP1 WILD-TYPE	25	20	27	24	20

'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4620. Gene #480: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LUZP1 MUTATED	1	2	0
LUZP1 WILD-TYPE	47	51	18

'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S4621. Gene #480: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LUZP1 MUTATED	2	0	1	0	0
LUZP1 WILD-TYPE	35	31	16	21	13

'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S4622. Gene #480: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LUZP1 MUTATED	3	0	0
LUZP1 WILD-TYPE	68	27	21

'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S4623. Gene #480: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LUZP1 MUTATED	0	0	0	0	3	0	0
LUZP1 WILD-TYPE	18	8	10	8	33	25	12

'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S4624. Gene #480: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LUZP1 MUTATED	0	2	0	1	0	0
LUZP1 WILD-TYPE	17	30	13	31	16	7

'ZHX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S4625. Gene #481: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZHX1 MUTATED	0	3	0	0
ZHX1 WILD-TYPE	19	50	30	24

'ZHX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S4626. Gene #481: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZHX1 MUTATED	1	2	0	0
ZHX1 WILD-TYPE	34	28	34	26

'ZHX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 1

Table S4627. Gene #481: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZHX1 MUTATED	0	0	0	3	0
ZHX1 WILD-TYPE	26	20	28	22	20

Figure S199. Get High-res Image Gene #481: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZHX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S4628. Gene #481: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZHX1 MUTATED	3	0	0
ZHX1 WILD-TYPE	45	53	18

'ZHX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 1

Table S4629. Gene #481: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZHX1 MUTATED	0	0	2	1	0
ZHX1 WILD-TYPE	37	31	15	20	13

'ZHX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S4630. Gene #481: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZHX1 MUTATED	1	2	0
ZHX1 WILD-TYPE	70	25	21

'ZHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S4631. Gene #481: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZHX1 MUTATED	0	0	1	0	2	0	0
ZHX1 WILD-TYPE	18	8	9	8	34	25	12

'ZHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S4632. Gene #481: 'ZHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZHX1 MUTATED	0	0	0	3	0	0
ZHX1 WILD-TYPE	17	32	13	29	16	7

'GNAL MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4633. Gene #482: 'GNAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GNAL MUTATED	0	2	1	0
GNAL WILD-TYPE	19	51	29	24

'GNAL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 1

Table S4634. Gene #482: 'GNAL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GNAL MUTATED	3	0	0	0
GNAL WILD-TYPE	32	30	34	26

'GNAL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4635. Gene #482: 'GNAL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GNAL MUTATED	1	0	1	1	0
GNAL WILD-TYPE	25	20	27	24	20

'GNAL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S4636. Gene #482: 'GNAL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GNAL MUTATED	1	1	1
GNAL WILD-TYPE	47	52	17

'GNAL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S4637. Gene #482: 'GNAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GNAL MUTATED	1	1	1	0	0
GNAL WILD-TYPE	36	30	16	21	13

'GNAL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S4638. Gene #482: 'GNAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GNAL MUTATED	2	0	1
GNAL WILD-TYPE	69	27	20

'GNAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S4639. Gene #482: 'GNAL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GNAL MUTATED	0	0	0	0	2	1	0
GNAL WILD-TYPE	18	8	10	8	34	24	12

'GNAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S4640. Gene #482: 'GNAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GNAL MUTATED	0	1	0	1	1	0
GNAL WILD-TYPE	17	31	13	31	15	7

'DOCK10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S4641. Gene #483: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DOCK10 MUTATED	0	2	3	1
DOCK10 WILD-TYPE	19	51	27	23

'DOCK10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 1

Table S4642. Gene #483: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DOCK10 MUTATED	3	1	1	1
DOCK10 WILD-TYPE	32	29	33	25

'DOCK10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S4643. Gene #483: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DOCK10 MUTATED	2	1	0	2	0
DOCK10 WILD-TYPE	27	17	13	7	13

'DOCK10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S4644. Gene #483: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DOCK10 MUTATED	4	0	0	1	0
DOCK10 WILD-TYPE	28	18	12	9	10

'DOCK10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S4645. Gene #483: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DOCK10 MUTATED	2	1	0	3	0
DOCK10 WILD-TYPE	24	19	28	22	20

'DOCK10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S4646. Gene #483: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DOCK10 MUTATED	4	1	1
DOCK10 WILD-TYPE	44	52	17

'DOCK10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S4647. Gene #483: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DOCK10 MUTATED	2	0	2	1	1
DOCK10 WILD-TYPE	35	31	15	20	12

'DOCK10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4648. Gene #483: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DOCK10 MUTATED	4	1	1
DOCK10 WILD-TYPE	67	26	20

'DOCK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S4649. Gene #483: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DOCK10 MUTATED	0	1	2	0	2	1	0
DOCK10 WILD-TYPE	18	7	8	8	34	24	12

'DOCK10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S4650. Gene #483: 'DOCK10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DOCK10 MUTATED	1	1	0	3	1	0
DOCK10 WILD-TYPE	16	31	13	29	15	7

'CDC25A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S4651. Gene #484: 'CDC25A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CDC25A MUTATED	2	1	0	0
CDC25A WILD-TYPE	17	52	30	24

'CDC25A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4652. Gene #484: 'CDC25A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CDC25A MUTATED	1	1	1	0
CDC25A WILD-TYPE	34	29	33	26

'CDC25A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S4653. Gene #484: 'CDC25A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CDC25A MUTATED	0	0	1	1	1
CDC25A WILD-TYPE	26	20	27	24	19

'CDC25A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4654. Gene #484: 'CDC25A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CDC25A MUTATED	1	2	0
CDC25A WILD-TYPE	47	51	18

'CDC25A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S4655. Gene #484: 'CDC25A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CDC25A MUTATED	1	1	1	0	0
CDC25A WILD-TYPE	36	30	16	21	13

'CDC25A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4656. Gene #484: 'CDC25A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CDC25A MUTATED	2	1	0
CDC25A WILD-TYPE	69	26	21

'CDC25A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 1

Table S4657. Gene #484: 'CDC25A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CDC25A MUTATED	1	1	0	1	0	0	0
CDC25A WILD-TYPE	17	7	10	7	36	25	12

'CDC25A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S4658. Gene #484: 'CDC25A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CDC25A MUTATED	0	1	1	1	0	0
CDC25A WILD-TYPE	17	31	12	31	16	7

'VPS24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S4659. Gene #485: 'VPS24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
VPS24 MUTATED	0	2	0	1
VPS24 WILD-TYPE	19	51	30	23

'VPS24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S4660. Gene #485: 'VPS24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
VPS24 MUTATED	2	0	1	0
VPS24 WILD-TYPE	33	30	33	26

'VPS24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S4661. Gene #485: 'VPS24 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
VPS24 MUTATED	2	0	0	1	0
VPS24 WILD-TYPE	27	18	13	8	13

'VPS24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S4662. Gene #485: 'VPS24 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
VPS24 MUTATED	2	0	0	1	0
VPS24 WILD-TYPE	30	18	12	9	10

'VPS24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S4663. Gene #485: 'VPS24 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
VPS24 MUTATED	2	0	0	1	0
VPS24 WILD-TYPE	24	20	28	24	20

'VPS24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S4664. Gene #485: 'VPS24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
VPS24 MUTATED	2	1	0
VPS24 WILD-TYPE	46	52	18

'VPS24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S4665. Gene #485: 'VPS24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
VPS24 MUTATED	3	0	0	0	0
VPS24 WILD-TYPE	34	31	17	21	13

'VPS24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4666. Gene #485: 'VPS24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
VPS24 MUTATED	2	1	0
VPS24 WILD-TYPE	69	26	21

'VPS24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S4667. Gene #485: 'VPS24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
VPS24 MUTATED	0	0	0	0	3	0	0
VPS24 WILD-TYPE	18	8	10	8	33	25	12

'VPS24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4668. Gene #485: 'VPS24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
VPS24 MUTATED	1	1	0	1	0	0
VPS24 WILD-TYPE	16	31	13	31	16	7

'F5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S4669. Gene #486: 'F5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
F5 MUTATED	1	4	5	1
F5 WILD-TYPE	18	49	25	23

'F5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0968 (Fisher's exact test), Q value = 1

Table S4670. Gene #486: 'F5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
F5 MUTATED	7	1	2	1
F5 WILD-TYPE	28	29	32	25

'F5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S4671. Gene #486: 'F5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
F5 MUTATED	3	2	1	1	2
F5 WILD-TYPE	26	16	12	8	11

'F5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S4672. Gene #486: 'F5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
F5 MUTATED	5	2	1	0	1
F5 WILD-TYPE	27	16	11	10	9

'F5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S4673. Gene #486: 'F5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
F5 MUTATED	5	0	2	3	1
F5 WILD-TYPE	21	20	26	22	19

'F5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S4674. Gene #486: 'F5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
F5 MUTATED	3	7	1
F5 WILD-TYPE	45	46	17

'F5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S4675. Gene #486: 'F5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
F5 MUTATED	7	2	1	1	0
F5 WILD-TYPE	30	29	16	20	13

'F5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S4676. Gene #486: 'F5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
F5 MUTATED	9	1	1
F5 WILD-TYPE	62	26	20

'F5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S4677. Gene #486: 'F5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
F5 MUTATED	1	1	1	1	5	2	0
F5 WILD-TYPE	17	7	9	7	31	23	12

'F5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.994 (Fisher's exact test), Q value = 1

Table S4678. Gene #486: 'F5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
F5 MUTATED	2	4	1	3	1	0
F5 WILD-TYPE	15	28	12	29	15	7

'AFF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S4679. Gene #487: 'AFF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AFF2 MUTATED	1	1	2	2
AFF2 WILD-TYPE	18	52	28	22

'AFF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S4680. Gene #487: 'AFF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AFF2 MUTATED	2	1	1	2
AFF2 WILD-TYPE	33	29	33	24

'AFF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S4681. Gene #487: 'AFF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AFF2 MUTATED	1	1	1	1	0
AFF2 WILD-TYPE	28	17	12	8	13

'AFF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S4682. Gene #487: 'AFF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AFF2 MUTATED	3	1	0	0	0
AFF2 WILD-TYPE	29	17	12	10	10

'AFF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S4683. Gene #487: 'AFF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AFF2 MUTATED	1	0	1	3	1
AFF2 WILD-TYPE	25	20	27	22	19

'AFF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S4684. Gene #487: 'AFF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AFF2 MUTATED	4	2	0
AFF2 WILD-TYPE	44	51	18

'AFF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S4685. Gene #487: 'AFF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AFF2 MUTATED	0	2	2	1	1
AFF2 WILD-TYPE	37	29	15	20	12

'AFF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S4686. Gene #487: 'AFF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AFF2 MUTATED	3	2	1
AFF2 WILD-TYPE	68	25	20

'AFF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S4687. Gene #487: 'AFF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AFF2 MUTATED	1	0	2	1	1	0	1
AFF2 WILD-TYPE	17	8	8	7	35	25	11

'AFF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S4688. Gene #487: 'AFF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AFF2 MUTATED	1	0	1	4	0	0
AFF2 WILD-TYPE	16	32	12	28	16	7

'ZFHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S4689. Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZFHX3 MUTATED	2	3	2	3
ZFHX3 WILD-TYPE	17	50	28	21

'ZFHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 1

Table S4690. Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZFHX3 MUTATED	3	2	2	3
ZFHX3 WILD-TYPE	32	28	32	23

'ZFHX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 1

Table S4691. Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZFHX3 MUTATED	1	1	0	3	0
ZFHX3 WILD-TYPE	28	17	13	6	13

Figure S200. Get High-res Image Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0539 (Fisher's exact test), Q value = 1

Table S4692. Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZFHX3 MUTATED	1	1	0	3	0
ZFHX3 WILD-TYPE	31	17	12	7	10

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S4693. Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZFHX3 MUTATED	3	0	1	3	2
ZFHX3 WILD-TYPE	23	20	27	22	18

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S4694. Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZFHX3 MUTATED	4	5	0
ZFHX3 WILD-TYPE	44	48	18

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S4695. Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZFHX3 MUTATED	2	3	1	3	0
ZFHX3 WILD-TYPE	35	28	16	18	13

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S4696. Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZFHX3 MUTATED	6	3	0
ZFHX3 WILD-TYPE	65	24	21

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S4697. Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZFHX3 MUTATED	0	0	3	1	4	1	0
ZFHX3 WILD-TYPE	18	8	7	7	32	24	12

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S4698. Gene #488: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZFHX3 MUTATED	1	2	2	3	1	0
ZFHX3 WILD-TYPE	16	30	11	29	15	7

'RNF168 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S4699. Gene #489: 'RNF168 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RNF168 MUTATED	1	0	1	2
RNF168 WILD-TYPE	18	53	29	22

'RNF168 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S4700. Gene #489: 'RNF168 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RNF168 MUTATED	2	0	1	1
RNF168 WILD-TYPE	33	30	33	25

'RNF168 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4701. Gene #489: 'RNF168 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RNF168 MUTATED	1	0	1	1	1
RNF168 WILD-TYPE	25	20	27	24	19

'RNF168 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S4702. Gene #489: 'RNF168 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RNF168 MUTATED	1	3	0
RNF168 WILD-TYPE	47	50	18

'RNF168 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4703. Gene #489: 'RNF168 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RNF168 MUTATED	2	1	0	1	0
RNF168 WILD-TYPE	35	30	17	20	13

'RNF168 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S4704. Gene #489: 'RNF168 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RNF168 MUTATED	4	0	0
RNF168 WILD-TYPE	67	27	21

'RNF168 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S4705. Gene #489: 'RNF168 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RNF168 MUTATED	0	0	1	0	2	1	0
RNF168 WILD-TYPE	18	8	9	8	34	24	12

'RNF168 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S4706. Gene #489: 'RNF168 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RNF168 MUTATED	0	2	1	1	0	0
RNF168 WILD-TYPE	17	30	12	31	16	7

'TGFBI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S4707. Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TGFBI MUTATED	0	3	3	0
TGFBI WILD-TYPE	19	50	27	24

'TGFBI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S4708. Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TGFBI MUTATED	2	0	2	2
TGFBI WILD-TYPE	33	30	32	24

'TGFBI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 1

Table S4709. Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TGFBI MUTATED	0	1	0	2	1
TGFBI WILD-TYPE	29	17	13	7	12

'TGFBI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S4710. Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TGFBI MUTATED	1	2	0	1	0
TGFBI WILD-TYPE	31	16	12	9	10

'TGFBI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S4711. Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TGFBI MUTATED	2	0	0	3	1
TGFBI WILD-TYPE	24	20	28	22	19

'TGFBI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S4712. Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TGFBI MUTATED	4	2	0
TGFBI WILD-TYPE	44	51	18

'TGFBI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S4713. Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TGFBI MUTATED	2	2	0	2	0
TGFBI WILD-TYPE	35	29	17	19	13

'TGFBI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S4714. Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TGFBI MUTATED	4	2	0
TGFBI WILD-TYPE	67	25	21

'TGFBI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 1

Table S4715. Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TGFBI MUTATED	0	0	3	1	1	1	0
TGFBI WILD-TYPE	18	8	7	7	35	24	12

Figure S201. Get High-res Image Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TGFBI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S4716. Gene #490: 'TGFBI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TGFBI MUTATED	1	1	1	3	0	0
TGFBI WILD-TYPE	16	31	12	29	16	7

'KLK13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S4717. Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KLK13 MUTATED	0	3	1	1
KLK13 WILD-TYPE	19	50	29	23

'KLK13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S4718. Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KLK13 MUTATED	2	0	2	1
KLK13 WILD-TYPE	33	30	32	25

'KLK13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 1

Table S4719. Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KLK13 MUTATED	0	0	1	2	0
KLK13 WILD-TYPE	29	18	12	7	13

Figure S202. Get High-res Image Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KLK13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S4720. Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KLK13 MUTATED	1	0	0	1	1
KLK13 WILD-TYPE	31	18	12	9	9

'KLK13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S4721. Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KLK13 MUTATED	0	0	2	2	1
KLK13 WILD-TYPE	26	20	26	23	19

'KLK13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S4722. Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KLK13 MUTATED	2	3	0
KLK13 WILD-TYPE	46	50	18

'KLK13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S4723. Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KLK13 MUTATED	2	2	0	1	0
KLK13 WILD-TYPE	35	29	17	20	13

'KLK13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S4724. Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KLK13 MUTATED	4	1	0
KLK13 WILD-TYPE	67	26	21

'KLK13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S4725. Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KLK13 MUTATED	0	0	1	0	2	2	0
KLK13 WILD-TYPE	18	8	9	8	34	23	12

'KLK13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S4726. Gene #491: 'KLK13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KLK13 MUTATED	0	2	1	2	0	0
KLK13 WILD-TYPE	17	30	12	30	16	7

'ASS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S4727. Gene #492: 'ASS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ASS1 MUTATED	1	0	1	2
ASS1 WILD-TYPE	18	53	29	22

'ASS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S4728. Gene #492: 'ASS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ASS1 MUTATED	2	2	0	0
ASS1 WILD-TYPE	33	28	34	26

'ASS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S4729. Gene #492: 'ASS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ASS1 MUTATED	2	2	0	0	0
ASS1 WILD-TYPE	24	18	28	25	20

'ASS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S4730. Gene #492: 'ASS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ASS1 MUTATED	1	1	2
ASS1 WILD-TYPE	47	52	16

'ASS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S4731. Gene #492: 'ASS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ASS1 MUTATED	2	0	0	2	0
ASS1 WILD-TYPE	35	31	17	19	13

'ASS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S4732. Gene #492: 'ASS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ASS1 MUTATED	2	0	2
ASS1 WILD-TYPE	69	27	19

'ASS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S4733. Gene #492: 'ASS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ASS1 MUTATED	1	0	0	0	1	0	2
ASS1 WILD-TYPE	17	8	10	8	35	25	10

'ASS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0322 (Fisher's exact test), Q value = 1

Table S4734. Gene #492: 'ASS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ASS1 MUTATED	1	1	0	0	0	2
ASS1 WILD-TYPE	16	31	13	32	16	5

Figure S203. Get High-res Image Gene #492: 'ASS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FOXD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S4735. Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FOXD4 MUTATED	1	2	3	0
FOXD4 WILD-TYPE	18	51	27	24

'FOXD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S4736. Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FOXD4 MUTATED	3	1	1	1
FOXD4 WILD-TYPE	32	29	33	25

'FOXD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S4737. Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FOXD4 MUTATED	0	0	1	1	1
FOXD4 WILD-TYPE	29	18	12	8	12

'FOXD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S4738. Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FOXD4 MUTATED	1	0	0	0	2
FOXD4 WILD-TYPE	31	18	12	10	8

'FOXD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S4739. Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FOXD4 MUTATED	1	1	3	1	0
FOXD4 WILD-TYPE	25	19	25	24	20

'FOXD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4740. Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FOXD4 MUTATED	2	3	1
FOXD4 WILD-TYPE	46	50	17

'FOXD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 1

Table S4741. Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FOXD4 MUTATED	1	0	0	3	2
FOXD4 WILD-TYPE	36	31	17	18	11

Figure S204. Get High-res Image Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FOXD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S4742. Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FOXD4 MUTATED	4	0	2
FOXD4 WILD-TYPE	67	27	19

'FOXD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S4743. Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FOXD4 MUTATED	0	1	1	0	1	1	1
FOXD4 WILD-TYPE	18	7	9	8	35	24	11

'FOXD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4744. Gene #493: 'FOXD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FOXD4 MUTATED	1	1	0	2	1	0
FOXD4 WILD-TYPE	16	31	13	30	15	7

'PVRL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S4745. Gene #494: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PVRL4 MUTATED	1	2	0	0
PVRL4 WILD-TYPE	18	51	30	24

'PVRL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 1

Table S4746. Gene #494: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PVRL4 MUTATED	3	0	0	0
PVRL4 WILD-TYPE	32	30	34	26

'PVRL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S4747. Gene #494: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PVRL4 MUTATED	2	0	1	0	0
PVRL4 WILD-TYPE	24	20	27	25	20

'PVRL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S4748. Gene #494: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PVRL4 MUTATED	0	3	0
PVRL4 WILD-TYPE	48	50	18

'PVRL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 1

Table S4749. Gene #494: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PVRL4 MUTATED	1	0	0	0	2
PVRL4 WILD-TYPE	36	31	17	21	11

'PVRL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S4750. Gene #494: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PVRL4 MUTATED	2	0	1
PVRL4 WILD-TYPE	69	27	20

'PVRL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S4751. Gene #494: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PVRL4 MUTATED	1	0	0	0	1	0	1
PVRL4 WILD-TYPE	17	8	10	8	35	25	11

'PVRL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4752. Gene #494: 'PVRL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PVRL4 MUTATED	1	1	0	1	0	0
PVRL4 WILD-TYPE	16	31	13	31	16	7

'NBEA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S4753. Gene #495: 'NBEA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NBEA MUTATED	0	1	2	0
NBEA WILD-TYPE	19	52	28	24

'NBEA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S4754. Gene #495: 'NBEA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NBEA MUTATED	2	0	1	0
NBEA WILD-TYPE	33	30	33	26

'NBEA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4755. Gene #495: 'NBEA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NBEA MUTATED	1	0	1	1	0
NBEA WILD-TYPE	25	20	27	24	20

'NBEA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S4756. Gene #495: 'NBEA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NBEA MUTATED	2	1	0
NBEA WILD-TYPE	46	52	18

'NBEA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S4757. Gene #495: 'NBEA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NBEA MUTATED	1	0	0	2	0
NBEA WILD-TYPE	36	31	17	19	13

'NBEA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S4758. Gene #495: 'NBEA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NBEA MUTATED	3	0	0
NBEA WILD-TYPE	68	27	21

'ZNF737 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S4759. Gene #496: 'ZNF737 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF737 MUTATED	0	3	1	1
ZNF737 WILD-TYPE	19	50	29	23

'ZNF737 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S4760. Gene #496: 'ZNF737 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF737 MUTATED	3	2	0	0
ZNF737 WILD-TYPE	32	28	34	26

'ZNF737 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S4761. Gene #496: 'ZNF737 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF737 MUTATED	1	1	0	0	1
ZNF737 WILD-TYPE	28	17	13	9	12

'ZNF737 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S4762. Gene #496: 'ZNF737 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF737 MUTATED	1	2	0	0	0
ZNF737 WILD-TYPE	31	16	12	10	10

'ZNF737 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S4763. Gene #496: 'ZNF737 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF737 MUTATED	1	1	1	2	0
ZNF737 WILD-TYPE	25	19	27	23	20

'ZNF737 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4764. Gene #496: 'ZNF737 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF737 MUTATED	2	2	1
ZNF737 WILD-TYPE	46	51	17

'ZNF737 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S4765. Gene #496: 'ZNF737 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF737 MUTATED	2	0	1	2	0
ZNF737 WILD-TYPE	35	31	16	19	13

'ZNF737 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4766. Gene #496: 'ZNF737 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF737 MUTATED	3	1	1
ZNF737 WILD-TYPE	68	26	20

'ZNF737 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S4767. Gene #496: 'ZNF737 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF737 MUTATED	2	0	0	0	2	0	1
ZNF737 WILD-TYPE	16	8	10	8	34	25	11

'ZNF737 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S4768. Gene #496: 'ZNF737 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF737 MUTATED	1	1	0	2	0	1
ZNF737 WILD-TYPE	16	31	13	30	16	6

'CPVL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S4769. Gene #497: 'CPVL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CPVL MUTATED	0	2	0	1
CPVL WILD-TYPE	19	51	30	23

'CPVL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S4770. Gene #497: 'CPVL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CPVL MUTATED	2	0	1	0
CPVL WILD-TYPE	33	30	33	26

'CPVL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S4771. Gene #497: 'CPVL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CPVL MUTATED	1	0	1	0	1
CPVL WILD-TYPE	25	20	27	25	19

'CPVL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S4772. Gene #497: 'CPVL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CPVL MUTATED	0	3	0
CPVL WILD-TYPE	48	50	18

'CPVL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S4773. Gene #497: 'CPVL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CPVL MUTATED	2	1	0	0	0
CPVL WILD-TYPE	35	30	17	21	13

'CPVL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S4774. Gene #497: 'CPVL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CPVL MUTATED	3	0	0
CPVL WILD-TYPE	68	27	21

'CPVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S4775. Gene #497: 'CPVL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CPVL MUTATED	0	1	0	0	1	1	0
CPVL WILD-TYPE	18	7	10	8	35	24	12

'CPVL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S4776. Gene #497: 'CPVL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CPVL MUTATED	1	1	1	0	0	0
CPVL WILD-TYPE	16	31	12	32	16	7

'AGAP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S4777. Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AGAP6 MUTATED	0	2	2	1
AGAP6 WILD-TYPE	19	51	28	23

'AGAP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S4778. Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AGAP6 MUTATED	2	2	1	0
AGAP6 WILD-TYPE	33	28	33	26

'AGAP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 1

Table S4779. Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AGAP6 MUTATED	0	1	1	2	0
AGAP6 WILD-TYPE	29	17	12	7	13

'AGAP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S4780. Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AGAP6 MUTATED	1	1	0	1	1
AGAP6 WILD-TYPE	31	17	12	9	9

'AGAP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 1

Table S4781. Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AGAP6 MUTATED	0	0	1	4	0
AGAP6 WILD-TYPE	26	20	27	21	20

Figure S205. Get High-res Image Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AGAP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S4782. Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AGAP6 MUTATED	4	1	0
AGAP6 WILD-TYPE	44	52	18

'AGAP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0504 (Fisher's exact test), Q value = 1

Table S4783. Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AGAP6 MUTATED	1	0	3	1	0
AGAP6 WILD-TYPE	36	31	14	20	13

'AGAP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S4784. Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AGAP6 MUTATED	3	2	0
AGAP6 WILD-TYPE	68	25	21

'AGAP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S4785. Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AGAP6 MUTATED	1	0	1	0	3	0	0
AGAP6 WILD-TYPE	17	8	9	8	33	25	12

'AGAP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S4786. Gene #498: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AGAP6 MUTATED	0	1	0	4	0	0
AGAP6 WILD-TYPE	17	31	13	28	16	7

'MMP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S4787. Gene #499: 'MMP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MMP13 MUTATED	1	1	1	1
MMP13 WILD-TYPE	18	52	29	23

'MMP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S4788. Gene #499: 'MMP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MMP13 MUTATED	2	0	1	1
MMP13 WILD-TYPE	33	30	33	25

'MMP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S4789. Gene #499: 'MMP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MMP13 MUTATED	1	0	1	1	0
MMP13 WILD-TYPE	28	18	12	8	13

'MMP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S4790. Gene #499: 'MMP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MMP13 MUTATED	2	0	1	0	0
MMP13 WILD-TYPE	30	18	11	10	10

'MMP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S4791. Gene #499: 'MMP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MMP13 MUTATED	0	0	1	2	1
MMP13 WILD-TYPE	26	20	27	23	19

'MMP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S4792. Gene #499: 'MMP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MMP13 MUTATED	3	1	0
MMP13 WILD-TYPE	45	52	18

'MMP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S4793. Gene #499: 'MMP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MMP13 MUTATED	0	2	0	2	0
MMP13 WILD-TYPE	37	29	17	19	13

'MMP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S4794. Gene #499: 'MMP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MMP13 MUTATED	4	0	0
MMP13 WILD-TYPE	67	27	21

'MMP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S4795. Gene #499: 'MMP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MMP13 MUTATED	1	0	1	1	0	1	0
MMP13 WILD-TYPE	17	8	9	7	36	24	12

'MMP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S4796. Gene #499: 'MMP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MMP13 MUTATED	0	1	1	2	0	0
MMP13 WILD-TYPE	17	31	12	30	16	7

'BCL11A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S4797. Gene #500: 'BCL11A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BCL11A MUTATED	0	4	1	1
BCL11A WILD-TYPE	19	49	29	23

'BCL11A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S4798. Gene #500: 'BCL11A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BCL11A MUTATED	2	2	2	0
BCL11A WILD-TYPE	33	28	32	26

'BCL11A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S4799. Gene #500: 'BCL11A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BCL11A MUTATED	1	1	1	0	1
BCL11A WILD-TYPE	28	17	12	9	12

'BCL11A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S4800. Gene #500: 'BCL11A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BCL11A MUTATED	1	1	0	1	1
BCL11A WILD-TYPE	31	17	12	9	9

'BCL11A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S4801. Gene #500: 'BCL11A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BCL11A MUTATED	1	0	2	3	0
BCL11A WILD-TYPE	25	20	26	22	20

'BCL11A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S4802. Gene #500: 'BCL11A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BCL11A MUTATED	4	2	0
BCL11A WILD-TYPE	44	51	18

'BCL11A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S4803. Gene #500: 'BCL11A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BCL11A MUTATED	1	1	2	2	0
BCL11A WILD-TYPE	36	30	15	19	13

'BCL11A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S4804. Gene #500: 'BCL11A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BCL11A MUTATED	3	3	0
BCL11A WILD-TYPE	68	24	21

'BCL11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S4805. Gene #500: 'BCL11A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BCL11A MUTATED	1	0	2	0	1	2	0
BCL11A WILD-TYPE	17	8	8	8	35	23	12

'BCL11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S4806. Gene #500: 'BCL11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BCL11A MUTATED	0	3	0	3	0	0
BCL11A WILD-TYPE	17	29	13	29	16	7

'ZNF207 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S4807. Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF207 MUTATED	1	1	2	0
ZNF207 WILD-TYPE	18	52	28	24

'ZNF207 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S4808. Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF207 MUTATED	1	1	0	2
ZNF207 WILD-TYPE	34	29	34	24

'ZNF207 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S4809. Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF207 MUTATED	1	0	0	1	1
ZNF207 WILD-TYPE	28	18	13	8	12

'ZNF207 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4810. Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF207 MUTATED	2	1	0	0	0
ZNF207 WILD-TYPE	30	17	12	10	10

'ZNF207 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S4811. Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF207 MUTATED	0	1	0	1	2
ZNF207 WILD-TYPE	26	19	28	24	18

'ZNF207 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4812. Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF207 MUTATED	2	2	0
ZNF207 WILD-TYPE	46	51	18

'ZNF207 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S4813. Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF207 MUTATED	1	2	0	1	0
ZNF207 WILD-TYPE	36	29	17	20	13

'ZNF207 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S4814. Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF207 MUTATED	4	0	0
ZNF207 WILD-TYPE	67	27	21

'ZNF207 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 1

Table S4815. Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF207 MUTATED	1	0	1	2	0	0	0
ZNF207 WILD-TYPE	17	8	9	6	36	25	12

Figure S206. Get High-res Image Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF207 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S4816. Gene #501: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF207 MUTATED	1	0	2	1	0	0
ZNF207 WILD-TYPE	16	32	11	31	16	7

'CCDC55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S4817. Gene #502: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCDC55 MUTATED	0	2	0	1
CCDC55 WILD-TYPE	19	51	30	23

'CCDC55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S4818. Gene #502: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCDC55 MUTATED	0	2	1	0
CCDC55 WILD-TYPE	35	28	33	26

'CCDC55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S4819. Gene #502: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCDC55 MUTATED	0	1	1	1	0
CCDC55 WILD-TYPE	26	19	27	24	20

'CCDC55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S4820. Gene #502: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCDC55 MUTATED	2	0	1
CCDC55 WILD-TYPE	46	53	17

'CCDC55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S4821. Gene #502: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCDC55 MUTATED	1	0	1	1	0
CCDC55 WILD-TYPE	36	31	16	20	13

'CCDC55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S4822. Gene #502: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCDC55 MUTATED	1	1	1
CCDC55 WILD-TYPE	70	26	20

'CCDC55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S4823. Gene #502: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCDC55 MUTATED	0	0	0	0	2	0	1
CCDC55 WILD-TYPE	18	8	10	8	34	25	11

'CCDC55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S4824. Gene #502: 'CCDC55 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCDC55 MUTATED	0	0	0	2	0	1
CCDC55 WILD-TYPE	17	32	13	30	16	6

'ORAI3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00933 (Fisher's exact test), Q value = 1

Table S4825. Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ORAI3 MUTATED	0	0	0	3
ORAI3 WILD-TYPE	19	53	30	21

Figure S207. Get High-res Image Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ORAI3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S4826. Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ORAI3 MUTATED	1	0	1	1
ORAI3 WILD-TYPE	34	30	33	25

'ORAI3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S4827. Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ORAI3 MUTATED	3	0	0	0	0
ORAI3 WILD-TYPE	26	18	13	9	13

'ORAI3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S4828. Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ORAI3 MUTATED	3	0	0	0	0
ORAI3 WILD-TYPE	29	18	12	10	10

'ORAI3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0658 (Fisher's exact test), Q value = 1

Table S4829. Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ORAI3 MUTATED	0	2	0	0	1
ORAI3 WILD-TYPE	26	18	28	25	19

'ORAI3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S4830. Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ORAI3 MUTATED	0	2	1
ORAI3 WILD-TYPE	48	51	17

'ORAI3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S4831. Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ORAI3 MUTATED	1	1	0	0	1
ORAI3 WILD-TYPE	36	30	17	21	12

'ORAI3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S4832. Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ORAI3 MUTATED	2	0	1
ORAI3 WILD-TYPE	69	27	20

'ORAI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S4833. Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ORAI3 MUTATED	0	0	0	0	0	3	0
ORAI3 WILD-TYPE	18	8	10	8	36	22	12

'ORAI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S4834. Gene #503: 'ORAI3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ORAI3 MUTATED	0	1	1	0	1	0
ORAI3 WILD-TYPE	17	31	12	32	15	7

'LAMA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S4835. Gene #504: 'LAMA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LAMA1 MUTATED	2	4	1	1
LAMA1 WILD-TYPE	17	49	29	23

'LAMA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S4836. Gene #504: 'LAMA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LAMA1 MUTATED	4	1	2	0
LAMA1 WILD-TYPE	31	29	32	26

'LAMA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S4837. Gene #504: 'LAMA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
LAMA1 MUTATED	3	1	1	1	0
LAMA1 WILD-TYPE	26	17	12	8	13

'LAMA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4838. Gene #504: 'LAMA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
LAMA1 MUTATED	3	1	1	1	0
LAMA1 WILD-TYPE	29	17	11	9	10

'LAMA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S4839. Gene #504: 'LAMA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LAMA1 MUTATED	3	2	1	1	0
LAMA1 WILD-TYPE	23	18	27	24	20

'LAMA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S4840. Gene #504: 'LAMA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LAMA1 MUTATED	4	2	1
LAMA1 WILD-TYPE	44	51	17

'LAMA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S4841. Gene #504: 'LAMA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LAMA1 MUTATED	2	0	1	3	1
LAMA1 WILD-TYPE	35	31	16	18	12

'LAMA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S4842. Gene #504: 'LAMA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LAMA1 MUTATED	5	0	2
LAMA1 WILD-TYPE	66	27	19

'LAMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 1

Table S4843. Gene #504: 'LAMA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LAMA1 MUTATED	1	0	2	0	3	1	0
LAMA1 WILD-TYPE	17	8	8	8	33	24	12

'LAMA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0769 (Fisher's exact test), Q value = 1

Table S4844. Gene #504: 'LAMA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LAMA1 MUTATED	3	0	1	1	1	1
LAMA1 WILD-TYPE	14	32	12	31	15	6

'AFAP1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S4845. Gene #505: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AFAP1L2 MUTATED	1	0	2	1
AFAP1L2 WILD-TYPE	18	53	28	23

'AFAP1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S4846. Gene #505: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AFAP1L2 MUTATED	2	1	1	0
AFAP1L2 WILD-TYPE	33	29	33	26

'AFAP1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4847. Gene #505: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AFAP1L2 MUTATED	1	1	1	1	0
AFAP1L2 WILD-TYPE	25	19	27	24	20

'AFAP1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S4848. Gene #505: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AFAP1L2 MUTATED	1	2	1
AFAP1L2 WILD-TYPE	47	51	17

'AFAP1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0716 (Fisher's exact test), Q value = 1

Table S4849. Gene #505: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AFAP1L2 MUTATED	1	0	0	3	0
AFAP1L2 WILD-TYPE	36	31	17	18	13

'AFAP1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S4850. Gene #505: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AFAP1L2 MUTATED	3	0	1
AFAP1L2 WILD-TYPE	68	27	20

'AFAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S4851. Gene #505: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AFAP1L2 MUTATED	0	0	1	0	1	0	1
AFAP1L2 WILD-TYPE	18	8	9	8	35	25	11

'AFAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S4852. Gene #505: 'AFAP1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AFAP1L2 MUTATED	0	1	0	1	0	1
AFAP1L2 WILD-TYPE	17	31	13	31	16	6

'ATXN2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S4853. Gene #506: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ATXN2L MUTATED	0	1	2	1
ATXN2L WILD-TYPE	19	52	28	23

'ATXN2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S4854. Gene #506: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ATXN2L MUTATED	2	0	2	0
ATXN2L WILD-TYPE	33	30	32	26

'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S4855. Gene #506: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ATXN2L MUTATED	2	0	1	1	0
ATXN2L WILD-TYPE	24	20	27	24	20

'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4856. Gene #506: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ATXN2L MUTATED	2	2	0
ATXN2L WILD-TYPE	46	51	18

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 1

Table S4857. Gene #506: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ATXN2L MUTATED	0	0	1	3	0
ATXN2L WILD-TYPE	37	31	16	18	13

Figure S208. Get High-res Image Gene #506: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S4858. Gene #506: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ATXN2L MUTATED	4	0	0
ATXN2L WILD-TYPE	67	27	21

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S4859. Gene #506: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ATXN2L MUTATED	0	0	1	0	2	0	0
ATXN2L WILD-TYPE	18	8	9	8	34	25	12

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S4860. Gene #506: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ATXN2L MUTATED	1	0	1	1	0	0
ATXN2L WILD-TYPE	16	32	12	31	16	7

'BECN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S4861. Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BECN1 MUTATED	0	3	0	0
BECN1 WILD-TYPE	19	50	30	24

'BECN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S4862. Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BECN1 MUTATED	2	0	1	0
BECN1 WILD-TYPE	33	30	33	26

'BECN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4863. Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BECN1 MUTATED	2	1	0	0	0
BECN1 WILD-TYPE	27	17	13	9	13

'BECN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S4864. Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BECN1 MUTATED	1	1	0	1	0
BECN1 WILD-TYPE	31	17	12	9	10

'BECN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 1

Table S4865. Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BECN1 MUTATED	3	0	0	0	0
BECN1 WILD-TYPE	23	20	28	25	20

Figure S209. Get High-res Image Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BECN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S4866. Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BECN1 MUTATED	0	3	0
BECN1 WILD-TYPE	48	50	18

'BECN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S4867. Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BECN1 MUTATED	2	0	0	1	0
BECN1 WILD-TYPE	35	31	17	20	13

'BECN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S4868. Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BECN1 MUTATED	3	0	0
BECN1 WILD-TYPE	68	27	21

'BECN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S4869. Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BECN1 MUTATED	0	0	0	0	2	1	0
BECN1 WILD-TYPE	18	8	10	8	34	24	12

'BECN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S4870. Gene #507: 'BECN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BECN1 MUTATED	0	2	1	0	0	0
BECN1 WILD-TYPE	17	30	12	32	16	7

'MAP3K7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00633 (Fisher's exact test), Q value = 1

Table S4871. Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MAP3K7 MUTATED	0	0	4	0
MAP3K7 WILD-TYPE	19	53	26	24

Figure S210. Get High-res Image Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP3K7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S4872. Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MAP3K7 MUTATED	1	1	0	2
MAP3K7 WILD-TYPE	34	29	34	24

'MAP3K7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S4873. Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MAP3K7 MUTATED	0	1	0	1	2
MAP3K7 WILD-TYPE	29	17	13	8	11

'MAP3K7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S4874. Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MAP3K7 MUTATED	1	2	0	0	1
MAP3K7 WILD-TYPE	31	16	12	10	9

'MAP3K7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 1

Table S4875. Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MAP3K7 MUTATED	0	0	0	2	2
MAP3K7 WILD-TYPE	26	20	28	23	18

'MAP3K7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S4876. Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MAP3K7 MUTATED	2	1	1
MAP3K7 WILD-TYPE	46	52	17

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S4877. Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MAP3K7 MUTATED	0	3	0	1	0
MAP3K7 WILD-TYPE	37	28	17	20	13

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S4878. Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MAP3K7 MUTATED	2	1	1
MAP3K7 WILD-TYPE	69	26	20

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 1

Table S4879. Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MAP3K7 MUTATED	0	0	1	2	0	1	0
MAP3K7 WILD-TYPE	18	8	9	6	36	24	12

Figure S211. Get High-res Image Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MAP3K7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S4880. Gene #508: 'MAP3K7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MAP3K7 MUTATED	0	0	1	2	1	0
MAP3K7 WILD-TYPE	17	32	12	30	15	7

'HVCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S4881. Gene #509: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HVCN1 MUTATED	0	3	1	0
HVCN1 WILD-TYPE	19	50	29	24

'HVCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S4882. Gene #509: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HVCN1 MUTATED	0	1	3	0
HVCN1 WILD-TYPE	35	29	31	26

'HVCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S4883. Gene #509: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HVCN1 MUTATED	0	1	3	0	0
HVCN1 WILD-TYPE	26	19	25	25	20

'HVCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S4884. Gene #509: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HVCN1 MUTATED	1	2	1
HVCN1 WILD-TYPE	47	51	17

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S4885. Gene #509: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HVCN1 MUTATED	2	1	0	0	1
HVCN1 WILD-TYPE	35	30	17	21	12

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S4886. Gene #509: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HVCN1 MUTATED	3	0	1
HVCN1 WILD-TYPE	68	27	20

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 1

Table S4887. Gene #509: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HVCN1 MUTATED	0	2	0	0	0	2	0
HVCN1 WILD-TYPE	18	6	10	8	36	23	12

Figure S212. Get High-res Image Gene #509: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S4888. Gene #509: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HVCN1 MUTATED	1	2	0	0	1	0
HVCN1 WILD-TYPE	16	30	13	32	15	7

'AKAP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 1

Table S4889. Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AKAP11 MUTATED	0	0	4	1
AKAP11 WILD-TYPE	19	53	26	23

Figure S213. Get High-res Image Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AKAP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 1

Table S4890. Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AKAP11 MUTATED	3	1	0	1
AKAP11 WILD-TYPE	32	29	34	25

'AKAP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S4891. Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AKAP11 MUTATED	1	1	1	1	0
AKAP11 WILD-TYPE	28	17	12	8	13

'AKAP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S4892. Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AKAP11 MUTATED	2	1	0	0	1
AKAP11 WILD-TYPE	30	17	12	10	9

'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S4893. Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AKAP11 MUTATED	1	0	1	2	1
AKAP11 WILD-TYPE	25	20	27	23	19

'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S4894. Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AKAP11 MUTATED	2	3	0
AKAP11 WILD-TYPE	46	50	18

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S4895. Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AKAP11 MUTATED	1	1	1	2	0
AKAP11 WILD-TYPE	36	30	16	19	13

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S4896. Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AKAP11 MUTATED	4	1	0
AKAP11 WILD-TYPE	67	26	21

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S4897. Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AKAP11 MUTATED	1	0	1	0	1	1	0
AKAP11 WILD-TYPE	17	8	9	8	35	24	12

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S4898. Gene #510: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AKAP11 MUTATED	0	1	0	2	1	0
AKAP11 WILD-TYPE	17	31	13	30	15	7

'ENPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 1

Table S4899. Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ENPP7 MUTATED	2	0	2	2
ENPP7 WILD-TYPE	17	53	28	22

Figure S214. Get High-res Image Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ENPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S4900. Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ENPP7 MUTATED	4	1	1	0
ENPP7 WILD-TYPE	31	29	33	26

'ENPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S4901. Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ENPP7 MUTATED	1	1	2	1	0
ENPP7 WILD-TYPE	28	17	11	8	13

'ENPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S4902. Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ENPP7 MUTATED	4	0	1	0	0
ENPP7 WILD-TYPE	28	18	11	10	10

'ENPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S4903. Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ENPP7 MUTATED	2	0	1	1	1
ENPP7 WILD-TYPE	24	20	27	24	19

'ENPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S4904. Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ENPP7 MUTATED	2	3	0
ENPP7 WILD-TYPE	46	50	18

'ENPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S4905. Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ENPP7 MUTATED	2	2	0	1	0
ENPP7 WILD-TYPE	35	29	17	20	13

'ENPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S4906. Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ENPP7 MUTATED	5	0	0
ENPP7 WILD-TYPE	66	27	21

'ENPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S4907. Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ENPP7 MUTATED	1	1	1	0	0	2	0
ENPP7 WILD-TYPE	17	7	9	8	36	23	12

'ENPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S4908. Gene #511: 'ENPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ENPP7 MUTATED	1	2	1	1	0	0
ENPP7 WILD-TYPE	16	30	12	31	16	7

'UNC5D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S4909. Gene #512: 'UNC5D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
UNC5D MUTATED	1	1	2	0
UNC5D WILD-TYPE	18	52	28	24

'UNC5D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S4910. Gene #512: 'UNC5D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
UNC5D MUTATED	2	1	1	0
UNC5D WILD-TYPE	33	29	33	26

'UNC5D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S4911. Gene #512: 'UNC5D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
UNC5D MUTATED	2	1	0	1	0
UNC5D WILD-TYPE	27	17	13	8	13

'UNC5D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S4912. Gene #512: 'UNC5D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
UNC5D MUTATED	3	1	0	0	0
UNC5D WILD-TYPE	29	17	12	10	10

'UNC5D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S4913. Gene #512: 'UNC5D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
UNC5D MUTATED	0	0	1	3	0
UNC5D WILD-TYPE	26	20	27	22	20

'UNC5D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S4914. Gene #512: 'UNC5D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
UNC5D MUTATED	3	1	0
UNC5D WILD-TYPE	45	52	18

'UNC5D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4915. Gene #512: 'UNC5D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
UNC5D MUTATED	2	1	0	1	0
UNC5D WILD-TYPE	35	30	17	20	13

'UNC5D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4916. Gene #512: 'UNC5D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
UNC5D MUTATED	3	1	0
UNC5D WILD-TYPE	68	26	21

'UNC5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S4917. Gene #512: 'UNC5D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
UNC5D MUTATED	0	0	1	1	2	0	0
UNC5D WILD-TYPE	18	8	9	7	34	25	12

'UNC5D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S4918. Gene #512: 'UNC5D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
UNC5D MUTATED	0	1	0	3	0	0
UNC5D WILD-TYPE	17	31	13	29	16	7

'TTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S4919. Gene #513: 'TTF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TTF1 MUTATED	1	2	1	0
TTF1 WILD-TYPE	18	51	29	24

'TTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S4920. Gene #513: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TTF1 MUTATED	2	1	0	1
TTF1 WILD-TYPE	33	29	34	25

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S4921. Gene #513: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TTF1 MUTATED	0	0	2	2	0
TTF1 WILD-TYPE	26	20	26	23	20

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4922. Gene #513: 'TTF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TTF1 MUTATED	2	2	0
TTF1 WILD-TYPE	46	51	18

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S4923. Gene #513: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TTF1 MUTATED	1	0	1	2	0
TTF1 WILD-TYPE	36	31	16	19	13

'TTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4924. Gene #513: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TTF1 MUTATED	3	1	0
TTF1 WILD-TYPE	68	26	21

'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 1

Table S4925. Gene #513: 'TTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TTF1 MUTATED	0	1	2	0	1	0	0
TTF1 WILD-TYPE	18	7	8	8	35	25	12

'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S4926. Gene #513: 'TTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TTF1 MUTATED	1	1	0	2	0	0
TTF1 WILD-TYPE	16	31	13	30	16	7

'CD93 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S4927. Gene #514: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CD93 MUTATED	1	3	1	0
CD93 WILD-TYPE	18	50	29	24

'CD93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4928. Gene #514: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CD93 MUTATED	2	1	1	1
CD93 WILD-TYPE	33	29	33	25

'CD93 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 1

Table S4929. Gene #514: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CD93 MUTATED	1	0	0	2	0
CD93 WILD-TYPE	28	18	13	7	13

'CD93 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S4930. Gene #514: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CD93 MUTATED	2	0	0	1	0
CD93 WILD-TYPE	30	18	12	9	10

'CD93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S4931. Gene #514: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CD93 MUTATED	0	1	1	2	1
CD93 WILD-TYPE	26	19	27	23	19

'CD93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4932. Gene #514: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CD93 MUTATED	2	2	1
CD93 WILD-TYPE	46	51	17

'CD93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S4933. Gene #514: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CD93 MUTATED	1	1	1	2	0
CD93 WILD-TYPE	36	30	16	19	13

'CD93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S4934. Gene #514: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CD93 MUTATED	4	0	1
CD93 WILD-TYPE	67	27	20

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S4935. Gene #514: 'CD93 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CD93 MUTATED	0	0	1	1	2	0	1
CD93 WILD-TYPE	18	8	9	7	34	25	11

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S4936. Gene #514: 'CD93 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CD93 MUTATED	0	1	1	2	0	1
CD93 WILD-TYPE	17	31	12	30	16	6

'CEACAM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S4937. Gene #515: 'CEACAM8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CEACAM8 MUTATED	0	2	0	1
CEACAM8 WILD-TYPE	19	51	30	23

'CEACAM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 1

Table S4938. Gene #515: 'CEACAM8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CEACAM8 MUTATED	3	0	0	0
CEACAM8 WILD-TYPE	32	30	34	26

'CEACAM8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S4939. Gene #515: 'CEACAM8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CEACAM8 MUTATED	3	0	0	0	0
CEACAM8 WILD-TYPE	26	18	13	9	13

'CEACAM8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S4940. Gene #515: 'CEACAM8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CEACAM8 MUTATED	2	0	0	1	0
CEACAM8 WILD-TYPE	30	18	12	9	10

'PARP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S4941. Gene #516: 'PARP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PARP1 MUTATED	0	2	2	0
PARP1 WILD-TYPE	19	51	28	24

'PARP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S4942. Gene #516: 'PARP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PARP1 MUTATED	1	2	1	0
PARP1 WILD-TYPE	34	28	33	26

'PARP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S4943. Gene #516: 'PARP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PARP1 MUTATED	0	0	1	1	1
PARP1 WILD-TYPE	29	18	12	8	12

'PARP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S4944. Gene #516: 'PARP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PARP1 MUTATED	1	0	1	0	1
PARP1 WILD-TYPE	31	18	11	10	9

'PARP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S4945. Gene #516: 'PARP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PARP1 MUTATED	0	1	1	2	0
PARP1 WILD-TYPE	26	19	27	23	20

'PARP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S4946. Gene #516: 'PARP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PARP1 MUTATED	3	0	1
PARP1 WILD-TYPE	45	53	17

'PARP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S4947. Gene #516: 'PARP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PARP1 MUTATED	1	0	1	1	1
PARP1 WILD-TYPE	36	31	16	20	12

'PARP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S4948. Gene #516: 'PARP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PARP1 MUTATED	2	1	1
PARP1 WILD-TYPE	69	26	20

'PARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S4949. Gene #516: 'PARP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PARP1 MUTATED	0	0	1	0	2	1	0
PARP1 WILD-TYPE	18	8	9	8	34	24	12

'PARP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S4950. Gene #516: 'PARP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PARP1 MUTATED	0	1	0	2	1	0
PARP1 WILD-TYPE	17	31	13	30	15	7

'CRNN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S4951. Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CRNN MUTATED	3	4	1	2
CRNN WILD-TYPE	16	49	29	22

'CRNN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S4952. Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CRNN MUTATED	5	2	3	0
CRNN WILD-TYPE	30	28	31	26

'CRNN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S4953. Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CRNN MUTATED	3	0	2	2	0
CRNN WILD-TYPE	26	18	11	7	13

'CRNN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S4954. Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CRNN MUTATED	6	0	1	0	0
CRNN WILD-TYPE	26	18	11	10	10

'CRNN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S4955. Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CRNN MUTATED	4	2	2	2	0
CRNN WILD-TYPE	22	18	26	23	20

'CRNN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S4956. Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CRNN MUTATED	6	4	0
CRNN WILD-TYPE	42	49	18

'CRNN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S4957. Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CRNN MUTATED	3	1	2	2	2
CRNN WILD-TYPE	34	30	15	19	11

'CRNN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S4958. Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CRNN MUTATED	7	3	0
CRNN WILD-TYPE	64	24	21

'CRNN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 1

Table S4959. Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CRNN MUTATED	5	1	1	0	3	0	0
CRNN WILD-TYPE	13	7	9	8	33	25	12

Figure S215. Get High-res Image Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CRNN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S4960. Gene #517: 'CRNN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CRNN MUTATED	3	2	1	4	0	0
CRNN WILD-TYPE	14	30	12	28	16	7

'ZNF254 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S4961. Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF254 MUTATED	0	3	2	0
ZNF254 WILD-TYPE	19	50	28	24

'ZNF254 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S4962. Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF254 MUTATED	1	0	2	2
ZNF254 WILD-TYPE	34	30	32	24

'ZNF254 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 1

Table S4963. Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZNF254 MUTATED	0	0	0	1	2
ZNF254 WILD-TYPE	29	18	13	8	11

Figure S216. Get High-res Image Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF254 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S4964. Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZNF254 MUTATED	1	0	1	0	1
ZNF254 WILD-TYPE	31	18	11	10	9

'ZNF254 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S4965. Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF254 MUTATED	0	1	2	1	1
ZNF254 WILD-TYPE	26	19	26	24	19

'ZNF254 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S4966. Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF254 MUTATED	3	2	0
ZNF254 WILD-TYPE	45	51	18

'ZNF254 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S4967. Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF254 MUTATED	2	1	0	1	1
ZNF254 WILD-TYPE	35	30	17	20	12

'ZNF254 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S4968. Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF254 MUTATED	4	1	0
ZNF254 WILD-TYPE	67	26	21

'ZNF254 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S4969. Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF254 MUTATED	0	1	1	0	2	1	0
ZNF254 WILD-TYPE	18	7	9	8	34	24	12

'ZNF254 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4970. Gene #518: 'ZNF254 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF254 MUTATED	1	2	0	1	1	0
ZNF254 WILD-TYPE	16	30	13	31	15	7

'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S4971. Gene #519: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ADAM30 MUTATED	1	1	1	0
ADAM30 WILD-TYPE	18	52	29	24

'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S4972. Gene #519: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ADAM30 MUTATED	2	1	0	0
ADAM30 WILD-TYPE	33	29	34	26

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4973. Gene #519: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ADAM30 MUTATED	1	0	1	1	0
ADAM30 WILD-TYPE	25	20	27	24	20

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4974. Gene #519: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ADAM30 MUTATED	1	2	0
ADAM30 WILD-TYPE	47	51	18

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S4975. Gene #519: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ADAM30 MUTATED	1	0	1	0	1
ADAM30 WILD-TYPE	36	31	16	21	12

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4976. Gene #519: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ADAM30 MUTATED	2	1	0
ADAM30 WILD-TYPE	69	26	21

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S4977. Gene #519: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ADAM30 MUTATED	1	0	1	0	1	0	0
ADAM30 WILD-TYPE	17	8	9	8	35	25	12

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4978. Gene #519: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ADAM30 MUTATED	1	1	0	1	0	0
ADAM30 WILD-TYPE	16	31	13	31	16	7

'DRD5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S4979. Gene #520: 'DRD5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DRD5 MUTATED	0	4	0	0
DRD5 WILD-TYPE	19	49	30	24

'DRD5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S4980. Gene #520: 'DRD5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DRD5 MUTATED	2	0	2	0
DRD5 WILD-TYPE	33	30	32	26

'DRD5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S4981. Gene #520: 'DRD5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DRD5 MUTATED	1	1	1	0	0
DRD5 WILD-TYPE	28	17	12	9	13

'DRD5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S4982. Gene #520: 'DRD5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DRD5 MUTATED	0	1	1	1	0
DRD5 WILD-TYPE	32	17	11	9	10

'DRD5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S4983. Gene #520: 'DRD5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DRD5 MUTATED	2	0	2	0	0
DRD5 WILD-TYPE	24	20	26	25	20

'DRD5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4984. Gene #520: 'DRD5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DRD5 MUTATED	2	2	0
DRD5 WILD-TYPE	46	51	18

'DRD5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S4985. Gene #520: 'DRD5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DRD5 MUTATED	2	0	0	1	1
DRD5 WILD-TYPE	35	31	17	20	12

'DRD5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S4986. Gene #520: 'DRD5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DRD5 MUTATED	3	0	1
DRD5 WILD-TYPE	68	27	20

'DRD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S4987. Gene #520: 'DRD5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DRD5 MUTATED	0	0	1	0	1	1	1
DRD5 WILD-TYPE	18	8	9	8	35	24	11

'DRD5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.791 (Fisher's exact test), Q value = 1

Table S4988. Gene #520: 'DRD5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DRD5 MUTATED	1	1	1	1	0	0
DRD5 WILD-TYPE	16	31	12	31	16	7

'MKI67IP MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4989. Gene #521: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MKI67IP MUTATED	0	2	1	1
MKI67IP WILD-TYPE	19	51	29	23

'MKI67IP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S4990. Gene #521: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MKI67IP MUTATED	2	0	1	1
MKI67IP WILD-TYPE	33	30	33	25

'MKI67IP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S4991. Gene #521: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MKI67IP MUTATED	0	0	1	2	1
MKI67IP WILD-TYPE	26	20	27	23	19

'MKI67IP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4992. Gene #521: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MKI67IP MUTATED	2	2	0
MKI67IP WILD-TYPE	46	51	18

'MKI67IP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S4993. Gene #521: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MKI67IP MUTATED	0	2	1	1	0
MKI67IP WILD-TYPE	37	29	16	20	13

'MKI67IP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4994. Gene #521: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MKI67IP MUTATED	3	1	0
MKI67IP WILD-TYPE	68	26	21

'MKI67IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S4995. Gene #521: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MKI67IP MUTATED	1	0	1	0	0	2	0
MKI67IP WILD-TYPE	17	8	9	8	36	23	12

'MKI67IP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S4996. Gene #521: 'MKI67IP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MKI67IP MUTATED	0	1	1	2	0	0
MKI67IP WILD-TYPE	17	31	12	30	16	7

'SYNPO2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S4997. Gene #522: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SYNPO2L MUTATED	2	2	2	0
SYNPO2L WILD-TYPE	17	51	28	24

'SYNPO2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4998. Gene #522: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SYNPO2L MUTATED	2	1	2	1
SYNPO2L WILD-TYPE	33	29	32	25

'SYNPO2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S4999. Gene #522: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SYNPO2L MUTATED	1	0	1	1	0
SYNPO2L WILD-TYPE	28	18	12	8	13

'SYNPO2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S5000. Gene #522: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SYNPO2L MUTATED	2	0	0	0	1
SYNPO2L WILD-TYPE	30	18	12	10	9

'SYNPO2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S5001. Gene #522: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SYNPO2L MUTATED	0	0	2	2	2
SYNPO2L WILD-TYPE	26	20	26	23	18

'SYNPO2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S5002. Gene #522: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SYNPO2L MUTATED	3	3	0
SYNPO2L WILD-TYPE	45	50	18

'SYNPO2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5003. Gene #522: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SYNPO2L MUTATED	2	2	1	1	0
SYNPO2L WILD-TYPE	35	29	16	20	13

'SYNPO2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S5004. Gene #522: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SYNPO2L MUTATED	4	2	0
SYNPO2L WILD-TYPE	67	25	21

'SYNPO2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S5005. Gene #522: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SYNPO2L MUTATED	0	0	1	1	3	1	0
SYNPO2L WILD-TYPE	18	8	9	7	33	24	12

'SYNPO2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S5006. Gene #522: 'SYNPO2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SYNPO2L MUTATED	0	2	1	2	1	0
SYNPO2L WILD-TYPE	17	30	12	30	15	7

'PROX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 1

Table S5007. Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PROX1 MUTATED	2	0	2	0
PROX1 WILD-TYPE	17	53	28	24

Figure S217. Get High-res Image Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PROX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S5008. Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PROX1 MUTATED	1	0	2	1
PROX1 WILD-TYPE	34	30	32	25

'PROX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S5009. Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PROX1 MUTATED	1	1	1	1	0
PROX1 WILD-TYPE	28	17	12	8	13

'PROX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S5010. Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PROX1 MUTATED	2	1	0	0	1
PROX1 WILD-TYPE	30	17	12	10	9

'PROX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5011. Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PROX1 MUTATED	1	0	1	1	1
PROX1 WILD-TYPE	25	20	27	24	19

'PROX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S5012. Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PROX1 MUTATED	1	3	0
PROX1 WILD-TYPE	47	50	18

'PROX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5013. Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PROX1 MUTATED	2	1	0	1	0
PROX1 WILD-TYPE	35	30	17	20	13

'PROX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S5014. Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PROX1 MUTATED	4	0	0
PROX1 WILD-TYPE	67	27	21

'PROX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S5015. Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PROX1 MUTATED	0	0	1	0	2	1	0
PROX1 WILD-TYPE	18	8	9	8	34	24	12

'PROX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S5016. Gene #523: 'PROX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PROX1 MUTATED	0	2	0	1	1	0
PROX1 WILD-TYPE	17	30	13	31	15	7

'KLK15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S5017. Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KLK15 MUTATED	0	2	4	0
KLK15 WILD-TYPE	19	51	26	24

'KLK15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S5018. Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KLK15 MUTATED	3	2	1	0
KLK15 WILD-TYPE	32	28	33	26

'KLK15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S5019. Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KLK15 MUTATED	0	1	1	1	0
KLK15 WILD-TYPE	29	17	12	8	13

'KLK15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S5020. Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KLK15 MUTATED	1	1	1	0	0
KLK15 WILD-TYPE	31	17	11	10	10

'KLK15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S5021. Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KLK15 MUTATED	0	2	1	3	0
KLK15 WILD-TYPE	26	18	27	22	20

'KLK15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S5022. Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KLK15 MUTATED	3	1	2
KLK15 WILD-TYPE	45	52	16

'KLK15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 1

Table S5023. Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KLK15 MUTATED	0	0	2	2	2
KLK15 WILD-TYPE	37	31	15	19	11

Figure S218. Get High-res Image Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KLK15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S5024. Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KLK15 MUTATED	2	3	1
KLK15 WILD-TYPE	69	24	20

'KLK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S5025. Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KLK15 MUTATED	2	0	1	0	1	0	2
KLK15 WILD-TYPE	16	8	9	8	35	25	10

'KLK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S5026. Gene #524: 'KLK15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KLK15 MUTATED	0	0	1	3	1	1
KLK15 WILD-TYPE	17	32	12	29	15	6

'C14ORF115 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S5027. Gene #525: 'C14ORF115 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C14ORF115 MUTATED	1	0	1	1
C14ORF115 WILD-TYPE	18	53	29	23

'C14ORF115 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S5028. Gene #525: 'C14ORF115 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C14ORF115 MUTATED	2	0	1	0
C14ORF115 WILD-TYPE	33	30	33	26

'C14ORF115 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S5029. Gene #525: 'C14ORF115 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C14ORF115 MUTATED	0	1	0	2	0
C14ORF115 WILD-TYPE	26	19	28	23	20

'C14ORF115 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S5030. Gene #525: 'C14ORF115 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C14ORF115 MUTATED	2	1	0
C14ORF115 WILD-TYPE	46	52	18

'C14ORF115 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S5031. Gene #525: 'C14ORF115 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C14ORF115 MUTATED	2	0	0	1	0
C14ORF115 WILD-TYPE	35	31	17	20	13

'C14ORF115 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S5032. Gene #525: 'C14ORF115 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C14ORF115 MUTATED	3	0	0
C14ORF115 WILD-TYPE	68	27	21

'C14ORF115 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S5033. Gene #525: 'C14ORF115 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C14ORF115 MUTATED	0	0	1	0	0	2	0
C14ORF115 WILD-TYPE	18	8	9	8	36	23	12

'C14ORF115 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S5034. Gene #525: 'C14ORF115 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C14ORF115 MUTATED	0	1	0	2	0	0
C14ORF115 WILD-TYPE	17	31	13	30	16	7

'SNIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S5035. Gene #526: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SNIP1 MUTATED	0	1	2	0
SNIP1 WILD-TYPE	19	52	28	24

'SNIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5036. Gene #526: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SNIP1 MUTATED	1	1	1	0
SNIP1 WILD-TYPE	34	29	33	26

'SNIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S5037. Gene #526: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SNIP1 MUTATED	0	1	1	1	0
SNIP1 WILD-TYPE	26	19	27	24	20

'SNIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 1

Table S5038. Gene #526: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SNIP1 MUTATED	1	1	1
SNIP1 WILD-TYPE	47	52	17

'SNIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S5039. Gene #526: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SNIP1 MUTATED	1	0	0	2	0
SNIP1 WILD-TYPE	36	31	17	19	13

'SNIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S5040. Gene #526: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SNIP1 MUTATED	2	0	1
SNIP1 WILD-TYPE	69	27	20

'SNIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S5041. Gene #526: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SNIP1 MUTATED	0	0	1	0	1	0	1
SNIP1 WILD-TYPE	18	8	9	8	35	25	11

'SNIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S5042. Gene #526: 'SNIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SNIP1 MUTATED	0	1	0	1	0	1
SNIP1 WILD-TYPE	17	31	13	31	16	6

'MAP7D3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5043. Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MAP7D3 MUTATED	0	3	1	0
MAP7D3 WILD-TYPE	19	50	29	24

'MAP7D3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S5044. Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MAP7D3 MUTATED	3	1	0	0
MAP7D3 WILD-TYPE	32	29	34	26

'MAP7D3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 1

Table S5045. Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MAP7D3 MUTATED	0	0	1	2	0
MAP7D3 WILD-TYPE	29	18	12	7	13

Figure S219. Get High-res Image Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MAP7D3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S5046. Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MAP7D3 MUTATED	1	0	1	1	0
MAP7D3 WILD-TYPE	31	18	11	9	10

'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S5047. Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MAP7D3 MUTATED	0	1	1	2	0
MAP7D3 WILD-TYPE	26	19	27	23	20

'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 1

Table S5048. Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MAP7D3 MUTATED	3	0	1
MAP7D3 WILD-TYPE	45	53	17

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S5049. Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MAP7D3 MUTATED	1	0	1	2	0
MAP7D3 WILD-TYPE	36	31	16	19	13

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S5050. Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MAP7D3 MUTATED	3	0	1
MAP7D3 WILD-TYPE	68	27	20

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S5051. Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MAP7D3 MUTATED	0	0	2	0	2	0	0
MAP7D3 WILD-TYPE	18	8	8	8	34	25	12

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S5052. Gene #527: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MAP7D3 MUTATED	1	0	0	2	0	1
MAP7D3 WILD-TYPE	16	32	13	30	16	6

'RBM16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S5053. Gene #528: 'RBM16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RBM16 MUTATED	1	1	2	0
RBM16 WILD-TYPE	18	52	28	24

'RBM16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S5054. Gene #528: 'RBM16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RBM16 MUTATED	1	1	2	0
RBM16 WILD-TYPE	34	29	32	26

'RBM16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S5055. Gene #528: 'RBM16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RBM16 MUTATED	2	0	0	2	0
RBM16 WILD-TYPE	24	20	28	23	20

'RBM16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S5056. Gene #528: 'RBM16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RBM16 MUTATED	3	1	0
RBM16 WILD-TYPE	45	52	18

'RBM16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5057. Gene #528: 'RBM16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RBM16 MUTATED	2	1	0	1	0
RBM16 WILD-TYPE	35	30	17	20	13

'RBM16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S5058. Gene #528: 'RBM16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RBM16 MUTATED	2	2	0
RBM16 WILD-TYPE	69	25	21

'RBM16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S5059. Gene #528: 'RBM16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RBM16 MUTATED	1	0	1	0	1	1	0
RBM16 WILD-TYPE	17	8	9	8	35	24	12

'RBM16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S5060. Gene #528: 'RBM16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RBM16 MUTATED	0	1	0	3	0	0
RBM16 WILD-TYPE	17	31	13	29	16	7

'PHACTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S5061. Gene #529: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PHACTR2 MUTATED	0	1	2	0
PHACTR2 WILD-TYPE	19	52	28	24

'PHACTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S5062. Gene #529: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PHACTR2 MUTATED	1	1	0	1
PHACTR2 WILD-TYPE	34	29	34	25

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S5063. Gene #529: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PHACTR2 MUTATED	0	1	0	1	1
PHACTR2 WILD-TYPE	26	19	28	24	19

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 1

Table S5064. Gene #529: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PHACTR2 MUTATED	1	0	2
PHACTR2 WILD-TYPE	47	53	16

Figure S220. Get High-res Image Gene #529: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S5065. Gene #529: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PHACTR2 MUTATED	0	1	0	2	0
PHACTR2 WILD-TYPE	37	30	17	19	13

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S5066. Gene #529: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PHACTR2 MUTATED	1	0	2
PHACTR2 WILD-TYPE	70	27	19

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S5067. Gene #529: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PHACTR2 MUTATED	0	0	1	0	0	1	1
PHACTR2 WILD-TYPE	18	8	9	8	36	24	11

'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S5068. Gene #529: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PHACTR2 MUTATED	0	0	0	1	1	1
PHACTR2 WILD-TYPE	17	32	13	31	15	6

'TLR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S5069. Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TLR1 MUTATED	0	1	1	2
TLR1 WILD-TYPE	19	52	29	22

'TLR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S5070. Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TLR1 MUTATED	2	1	0	1
TLR1 WILD-TYPE	33	29	34	25

'TLR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 1

Table S5071. Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TLR1 MUTATED	0	0	0	3	0
TLR1 WILD-TYPE	29	18	13	6	13

Figure S221. Get High-res Image Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TLR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S5072. Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TLR1 MUTATED	1	0	0	2	0
TLR1 WILD-TYPE	31	18	12	8	10

'TLR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S5073. Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TLR1 MUTATED	1	1	0	1	1
TLR1 WILD-TYPE	25	19	28	24	19

'TLR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S5074. Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TLR1 MUTATED	2	1	1
TLR1 WILD-TYPE	46	52	17

'TLR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 1

Table S5075. Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TLR1 MUTATED	0	1	0	3	0
TLR1 WILD-TYPE	37	30	17	18	13

'TLR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S5076. Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TLR1 MUTATED	2	1	1
TLR1 WILD-TYPE	69	26	20

'TLR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S5077. Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TLR1 MUTATED	1	0	1	0	0	1	1
TLR1 WILD-TYPE	17	8	9	8	36	24	11

'TLR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S5078. Gene #530: 'TLR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TLR1 MUTATED	0	1	0	2	0	1
TLR1 WILD-TYPE	17	31	13	30	16	6

'OR6C74 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5079. Gene #531: 'OR6C74 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
OR6C74 MUTATED	0	2	1	0
OR6C74 WILD-TYPE	19	51	29	24

'OR6C74 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5080. Gene #531: 'OR6C74 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
OR6C74 MUTATED	1	1	1	0
OR6C74 WILD-TYPE	34	29	33	26

'OR6C74 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S5081. Gene #531: 'OR6C74 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
OR6C74 MUTATED	1	0	0	2	0
OR6C74 WILD-TYPE	25	20	28	23	20

'OR6C74 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S5082. Gene #531: 'OR6C74 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
OR6C74 MUTATED	2	1	0
OR6C74 WILD-TYPE	46	52	18

'OR6C74 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S5083. Gene #531: 'OR6C74 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
OR6C74 MUTATED	1	0	1	1	0
OR6C74 WILD-TYPE	36	31	16	20	13

'OR6C74 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5084. Gene #531: 'OR6C74 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
OR6C74 MUTATED	2	1	0
OR6C74 WILD-TYPE	69	26	21

'OR6C74 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S5085. Gene #531: 'OR6C74 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
OR6C74 MUTATED	1	0	1	0	1	0	0
OR6C74 WILD-TYPE	17	8	9	8	35	25	12

'OR6C74 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S5086. Gene #531: 'OR6C74 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
OR6C74 MUTATED	0	1	0	2	0	0
OR6C74 WILD-TYPE	17	31	13	30	16	7

'ROBO3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S5087. Gene #532: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ROBO3 MUTATED	2	1	3	1
ROBO3 WILD-TYPE	17	52	27	23

'ROBO3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S5088. Gene #532: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ROBO3 MUTATED	3	1	1	2
ROBO3 WILD-TYPE	32	29	33	24

'ROBO3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S5089. Gene #532: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ROBO3 MUTATED	2	0	0	1	0
ROBO3 WILD-TYPE	27	18	13	8	13

'ROBO3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S5090. Gene #532: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ROBO3 MUTATED	2	0	0	1	0
ROBO3 WILD-TYPE	30	18	12	9	10

'ROBO3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S5091. Gene #532: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ROBO3 MUTATED	3	0	0	3	1
ROBO3 WILD-TYPE	23	20	28	22	19

'ROBO3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S5092. Gene #532: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ROBO3 MUTATED	4	3	0
ROBO3 WILD-TYPE	44	50	18

'ROBO3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S5093. Gene #532: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ROBO3 MUTATED	2	2	1	2	0
ROBO3 WILD-TYPE	35	29	16	19	13

'ROBO3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S5094. Gene #532: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ROBO3 MUTATED	4	3	0
ROBO3 WILD-TYPE	67	24	21

'ROBO3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S5095. Gene #532: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ROBO3 MUTATED	0	0	2	0	3	2	0
ROBO3 WILD-TYPE	18	8	8	8	33	23	12

'ROBO3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S5096. Gene #532: 'ROBO3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ROBO3 MUTATED	0	2	1	3	1	0
ROBO3 WILD-TYPE	17	30	12	29	15	7

'SLC45A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S5097. Gene #533: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC45A4 MUTATED	0	3	2	1
SLC45A4 WILD-TYPE	19	50	28	23

'SLC45A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S5098. Gene #533: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC45A4 MUTATED	2	3	1	0
SLC45A4 WILD-TYPE	33	27	33	26

'SLC45A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S5099. Gene #533: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLC45A4 MUTATED	2	0	1	2	1
SLC45A4 WILD-TYPE	27	18	12	7	12

'SLC45A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 1

Table S5100. Gene #533: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLC45A4 MUTATED	2	0	0	2	2
SLC45A4 WILD-TYPE	30	18	12	8	8

'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S5101. Gene #533: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC45A4 MUTATED	1	1	1	2	0
SLC45A4 WILD-TYPE	25	19	27	23	20

'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S5102. Gene #533: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC45A4 MUTATED	3	1	1
SLC45A4 WILD-TYPE	45	52	17

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 1

Table S5103. Gene #533: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC45A4 MUTATED	1	0	0	3	1
SLC45A4 WILD-TYPE	36	31	17	18	12

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5104. Gene #533: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC45A4 MUTATED	3	1	1
SLC45A4 WILD-TYPE	68	26	20

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S5105. Gene #533: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC45A4 MUTATED	0	0	2	0	2	1	0
SLC45A4 WILD-TYPE	18	8	8	8	34	24	12

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.923 (Fisher's exact test), Q value = 1

Table S5106. Gene #533: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC45A4 MUTATED	0	2	0	2	1	0
SLC45A4 WILD-TYPE	17	30	13	30	15	7

'COQ9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S5107. Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
COQ9 MUTATED	0	1	1	1
COQ9 WILD-TYPE	19	52	29	23

'COQ9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5108. Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
COQ9 MUTATED	1	1	1	0
COQ9 WILD-TYPE	34	29	33	26

'COQ9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 1

Table S5109. Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
COQ9 MUTATED	0	0	2	1	0
COQ9 WILD-TYPE	29	18	11	8	13

Figure S222. Get High-res Image Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'COQ9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S5110. Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
COQ9 MUTATED	2	0	1	0	0
COQ9 WILD-TYPE	30	18	11	10	10

'COQ9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S5111. Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
COQ9 MUTATED	0	0	1	2	0
COQ9 WILD-TYPE	26	20	27	23	20

'COQ9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S5112. Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
COQ9 MUTATED	3	0	0
COQ9 WILD-TYPE	45	53	18

'COQ9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S5113. Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
COQ9 MUTATED	1	0	1	1	0
COQ9 WILD-TYPE	36	31	16	20	13

'COQ9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5114. Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
COQ9 MUTATED	2	1	0
COQ9 WILD-TYPE	69	26	21

'COQ9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S5115. Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
COQ9 MUTATED	1	0	1	0	1	0	0
COQ9 WILD-TYPE	17	8	9	8	35	25	12

'COQ9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S5116. Gene #534: 'COQ9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
COQ9 MUTATED	0	0	0	3	0	0
COQ9 WILD-TYPE	17	32	13	29	16	7

'CLCN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S5117. Gene #535: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CLCN3 MUTATED	0	2	0	1
CLCN3 WILD-TYPE	19	51	30	23

'CLCN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5118. Gene #535: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CLCN3 MUTATED	1	1	1	0
CLCN3 WILD-TYPE	34	29	33	26

'CLCN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S5119. Gene #535: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CLCN3 MUTATED	1	0	0	2	0
CLCN3 WILD-TYPE	25	20	28	23	20

'CLCN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S5120. Gene #535: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CLCN3 MUTATED	2	1	0
CLCN3 WILD-TYPE	46	52	18

'CLCN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 1

Table S5121. Gene #535: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CLCN3 MUTATED	0	0	2	1	0
CLCN3 WILD-TYPE	37	31	15	20	13

'CLCN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5122. Gene #535: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CLCN3 MUTATED	2	1	0
CLCN3 WILD-TYPE	69	26	21

'CLCN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S5123. Gene #535: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CLCN3 MUTATED	0	0	0	0	3	0	0
CLCN3 WILD-TYPE	18	8	10	8	33	25	12

'CLCN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S5124. Gene #535: 'CLCN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CLCN3 MUTATED	0	0	1	2	0	0
CLCN3 WILD-TYPE	17	32	12	30	16	7

'SFRS11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0918 (Fisher's exact test), Q value = 1

Table S5125. Gene #536: 'SFRS11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SFRS11 MUTATED	1	0	2	0
SFRS11 WILD-TYPE	18	53	28	24

'SFRS11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S5126. Gene #536: 'SFRS11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SFRS11 MUTATED	1	0	0	2
SFRS11 WILD-TYPE	34	30	34	24

'SFRS11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S5127. Gene #536: 'SFRS11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SFRS11 MUTATED	0	1	1	1	0
SFRS11 WILD-TYPE	26	19	27	24	20

'SFRS11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S5128. Gene #536: 'SFRS11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SFRS11 MUTATED	1	1	1
SFRS11 WILD-TYPE	47	52	17

'SFRS11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 1

Table S5129. Gene #536: 'SFRS11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SFRS11 MUTATED	0	0	0	2	1
SFRS11 WILD-TYPE	37	31	17	19	12

Figure S223. Get High-res Image Gene #536: 'SFRS11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SFRS11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S5130. Gene #536: 'SFRS11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SFRS11 MUTATED	2	0	1
SFRS11 WILD-TYPE	69	27	20

'SFRS11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 1

Table S5131. Gene #536: 'SFRS11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SFRS11 MUTATED	0	1	1	0	0	0	1
SFRS11 WILD-TYPE	18	7	9	8	36	25	11

Figure S224. Get High-res Image Gene #536: 'SFRS11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SFRS11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S5132. Gene #536: 'SFRS11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SFRS11 MUTATED	1	0	0	1	1	0
SFRS11 WILD-TYPE	16	32	13	31	15	7

'SIGLEC14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S5133. Gene #537: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SIGLEC14 MUTATED	1	1	1	0
SIGLEC14 WILD-TYPE	18	52	29	24

'SIGLEC14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S5134. Gene #537: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SIGLEC14 MUTATED	2	0	1	0
SIGLEC14 WILD-TYPE	33	30	33	26

'SIGLEC14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5135. Gene #537: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SIGLEC14 MUTATED	1	0	1	1	0
SIGLEC14 WILD-TYPE	25	20	27	24	20

'SIGLEC14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S5136. Gene #537: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SIGLEC14 MUTATED	2	1	0
SIGLEC14 WILD-TYPE	46	52	18

'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S5137. Gene #537: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SIGLEC14 MUTATED	2	0	0	1	0
SIGLEC14 WILD-TYPE	35	31	17	20	13

'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S5138. Gene #537: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SIGLEC14 MUTATED	3	0	0
SIGLEC14 WILD-TYPE	68	27	21

'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0906 (Fisher's exact test), Q value = 1

Table S5139. Gene #537: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SIGLEC14 MUTATED	1	1	1	0	0	0	0
SIGLEC14 WILD-TYPE	17	7	9	8	36	25	12

'SIGLEC14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5140. Gene #537: 'SIGLEC14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SIGLEC14 MUTATED	1	1	0	1	0	0
SIGLEC14 WILD-TYPE	16	31	13	31	16	7

'PRKCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0252 (Fisher's exact test), Q value = 1

Table S5141. Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PRKCD MUTATED	0	0	2	3
PRKCD WILD-TYPE	19	53	28	21

Figure S225. Get High-res Image Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRKCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S5142. Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PRKCD MUTATED	1	0	1	3
PRKCD WILD-TYPE	34	30	33	23

'PRKCD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S5143. Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PRKCD MUTATED	2	0	0	1	0
PRKCD WILD-TYPE	27	18	13	8	13

'PRKCD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S5144. Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PRKCD MUTATED	3	0	0	0	0
PRKCD WILD-TYPE	29	18	12	10	10

'PRKCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 1

Table S5145. Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PRKCD MUTATED	0	3	0	1	1
PRKCD WILD-TYPE	26	17	28	24	19

'PRKCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S5146. Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PRKCD MUTATED	1	2	2
PRKCD WILD-TYPE	47	51	16

'PRKCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S5147. Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PRKCD MUTATED	1	1	0	1	2
PRKCD WILD-TYPE	36	30	17	20	11

'PRKCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 1

Table S5148. Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PRKCD MUTATED	2	0	3
PRKCD WILD-TYPE	69	27	18

'PRKCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S5149. Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PRKCD MUTATED	0	0	1	0	0	3	1
PRKCD WILD-TYPE	18	8	9	8	36	22	11

'PRKCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S5150. Gene #538: 'PRKCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PRKCD MUTATED	1	1	0	1	2	0
PRKCD WILD-TYPE	16	31	13	31	14	7

'ATP2B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S5151. Gene #539: 'ATP2B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ATP2B2 MUTATED	2	1	1	1
ATP2B2 WILD-TYPE	17	52	29	23

'ATP2B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S5152. Gene #539: 'ATP2B2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ATP2B2 MUTATED	3	0	2	0
ATP2B2 WILD-TYPE	32	30	32	26

'ATP2B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S5153. Gene #539: 'ATP2B2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ATP2B2 MUTATED	2	1	0	1	0
ATP2B2 WILD-TYPE	27	17	13	8	13

'ATP2B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S5154. Gene #539: 'ATP2B2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ATP2B2 MUTATED	3	1	0	0	0
ATP2B2 WILD-TYPE	29	17	12	10	10

'ATP2B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S5155. Gene #539: 'ATP2B2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ATP2B2 MUTATED	1	0	2	1	1
ATP2B2 WILD-TYPE	25	20	26	24	19

'ATP2B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S5156. Gene #539: 'ATP2B2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ATP2B2 MUTATED	1	4	0
ATP2B2 WILD-TYPE	47	49	18

'ATP2B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.96 (Fisher's exact test), Q value = 1

Table S5157. Gene #539: 'ATP2B2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ATP2B2 MUTATED	2	2	0	1	0
ATP2B2 WILD-TYPE	35	29	17	20	13

'ATP2B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S5158. Gene #539: 'ATP2B2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ATP2B2 MUTATED	5	0	0
ATP2B2 WILD-TYPE	66	27	21

'ATP2B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S5159. Gene #539: 'ATP2B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ATP2B2 MUTATED	0	1	1	1	2	0	0
ATP2B2 WILD-TYPE	18	7	9	7	34	25	12

'ATP2B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S5160. Gene #539: 'ATP2B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ATP2B2 MUTATED	0	2	2	1	0	0
ATP2B2 WILD-TYPE	17	30	11	31	16	7

'RASAL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 1

Table S5161. Gene #540: 'RASAL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RASAL1 MUTATED	0	0	3	0
RASAL1 WILD-TYPE	19	53	27	24

Figure S226. Get High-res Image Gene #540: 'RASAL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RASAL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S5162. Gene #540: 'RASAL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RASAL1 MUTATED	1	2	0	0
RASAL1 WILD-TYPE	34	28	34	26

'RASAL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S5163. Gene #540: 'RASAL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RASAL1 MUTATED	0	1	0	2	0
RASAL1 WILD-TYPE	26	19	28	23	20

'RASAL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S5164. Gene #540: 'RASAL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RASAL1 MUTATED	2	0	1
RASAL1 WILD-TYPE	46	53	17

'RASAL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S5165. Gene #540: 'RASAL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RASAL1 MUTATED	0	1	0	1	1
RASAL1 WILD-TYPE	37	30	17	20	12

'RASAL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S5166. Gene #540: 'RASAL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RASAL1 MUTATED	1	2	0
RASAL1 WILD-TYPE	70	25	21

'RASAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 1

Table S5167. Gene #540: 'RASAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RASAL1 MUTATED	0	0	1	1	0	0	1
RASAL1 WILD-TYPE	18	8	9	7	36	25	11

Figure S227. Get High-res Image Gene #540: 'RASAL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RASAL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S5168. Gene #540: 'RASAL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RASAL1 MUTATED	0	0	0	2	0	1
RASAL1 WILD-TYPE	17	32	13	30	16	6

'NPIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S5169. Gene #541: 'NPIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NPIP MUTATED	0	2	0	1
NPIP WILD-TYPE	19	51	30	23

'NPIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S5170. Gene #541: 'NPIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NPIP MUTATED	2	1	0	0
NPIP WILD-TYPE	33	29	34	26

'NPIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5171. Gene #541: 'NPIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NPIP MUTATED	1	0	1	1	0
NPIP WILD-TYPE	25	20	27	24	20

'NPIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5172. Gene #541: 'NPIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NPIP MUTATED	1	2	0
NPIP WILD-TYPE	47	51	18

'NPIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S5173. Gene #541: 'NPIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NPIP MUTATED	1	0	1	1	0
NPIP WILD-TYPE	36	31	16	20	13

'NPIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5174. Gene #541: 'NPIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NPIP MUTATED	2	1	0
NPIP WILD-TYPE	69	26	21

'NPIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S5175. Gene #541: 'NPIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NPIP MUTATED	1	0	0	0	2	0	0
NPIP WILD-TYPE	17	8	10	8	34	25	12

'NPIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S5176. Gene #541: 'NPIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NPIP MUTATED	0	1	1	1	0	0
NPIP WILD-TYPE	17	31	12	31	16	7

'DISP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S5177. Gene #542: 'DISP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DISP1 MUTATED	2	4	2	1
DISP1 WILD-TYPE	17	49	28	23

'DISP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S5178. Gene #542: 'DISP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DISP1 MUTATED	4	2	3	0
DISP1 WILD-TYPE	31	28	31	26

'DISP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S5179. Gene #542: 'DISP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DISP1 MUTATED	3	0	0	1	0
DISP1 WILD-TYPE	26	18	13	8	13

'DISP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S5180. Gene #542: 'DISP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DISP1 MUTATED	4	0	0	0	0
DISP1 WILD-TYPE	28	18	12	10	10

'DISP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S5181. Gene #542: 'DISP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DISP1 MUTATED	2	2	2	3	0
DISP1 WILD-TYPE	24	18	26	22	20

'DISP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S5182. Gene #542: 'DISP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DISP1 MUTATED	3	5	1
DISP1 WILD-TYPE	45	48	17

'DISP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S5183. Gene #542: 'DISP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DISP1 MUTATED	3	1	1	4	0
DISP1 WILD-TYPE	34	30	16	17	13

'DISP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S5184. Gene #542: 'DISP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DISP1 MUTATED	7	1	1
DISP1 WILD-TYPE	64	26	20

'DISP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 1

Table S5185. Gene #542: 'DISP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DISP1 MUTATED	0	2	1	0	1	2	2
DISP1 WILD-TYPE	18	6	9	8	35	23	10

'DISP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S5186. Gene #542: 'DISP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DISP1 MUTATED	1	1	2	3	0	1
DISP1 WILD-TYPE	16	31	11	29	16	6

'CD14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S5187. Gene #543: 'CD14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CD14 MUTATED	1	0	1	1
CD14 WILD-TYPE	18	53	29	23

'CD14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5188. Gene #543: 'CD14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CD14 MUTATED	1	1	1	0
CD14 WILD-TYPE	34	29	33	26

'TATDN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5189. Gene #544: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TATDN2 MUTATED	0	2	1	1
TATDN2 WILD-TYPE	19	51	29	23

'TATDN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S5190. Gene #544: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TATDN2 MUTATED	2	0	1	1
TATDN2 WILD-TYPE	33	30	33	25

'TATDN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S5191. Gene #544: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TATDN2 MUTATED	0	0	1	2	1
TATDN2 WILD-TYPE	26	20	27	23	19

'TATDN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5192. Gene #544: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TATDN2 MUTATED	2	2	0
TATDN2 WILD-TYPE	46	51	18

'TATDN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S5193. Gene #544: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TATDN2 MUTATED	1	1	1	1	0
TATDN2 WILD-TYPE	36	30	16	20	13

'TATDN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S5194. Gene #544: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TATDN2 MUTATED	4	0	0
TATDN2 WILD-TYPE	67	27	21

'TATDN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S5195. Gene #544: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TATDN2 MUTATED	0	1	1	0	1	1	0
TATDN2 WILD-TYPE	18	7	9	8	35	24	12

'TATDN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S5196. Gene #544: 'TATDN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TATDN2 MUTATED	1	1	0	2	0	0
TATDN2 WILD-TYPE	16	31	13	30	16	7

'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 1

Table S5197. Gene #545: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ARID1A MUTATED	3	1	2	3
ARID1A WILD-TYPE	16	52	28	21

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S5198. Gene #545: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ARID1A MUTATED	3	1	3	2
ARID1A WILD-TYPE	32	29	31	24

'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S5199. Gene #545: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ARID1A MUTATED	2	1	2	1	0
ARID1A WILD-TYPE	27	17	11	8	13

'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S5200. Gene #545: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ARID1A MUTATED	3	1	2	0	0
ARID1A WILD-TYPE	29	17	10	10	10

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S5201. Gene #545: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ARID1A MUTATED	3	1	2	1	1
ARID1A WILD-TYPE	23	19	26	24	19

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S5202. Gene #545: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ARID1A MUTATED	2	5	1
ARID1A WILD-TYPE	46	48	17

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5203. Gene #545: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ARID1A MUTATED	3	2	1	1	1
ARID1A WILD-TYPE	34	29	16	20	12

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S5204. Gene #545: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ARID1A MUTATED	5	1	2
ARID1A WILD-TYPE	66	26	19

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S5205. Gene #545: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ARID1A MUTATED	1	1	1	0	3	2	0
ARID1A WILD-TYPE	17	7	9	8	33	23	12

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S5206. Gene #545: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ARID1A MUTATED	2	2	0	2	2	0
ARID1A WILD-TYPE	15	30	13	30	14	7

'ZC3H11A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 1

Table S5207. Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZC3H11A MUTATED	0	1	3	1
ZC3H11A WILD-TYPE	19	52	27	23

'ZC3H11A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S5208. Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZC3H11A MUTATED	2	1	0	2
ZC3H11A WILD-TYPE	33	29	34	24

'ZC3H11A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S5209. Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZC3H11A MUTATED	2	1	0	1	1
ZC3H11A WILD-TYPE	27	17	13	8	12

'ZC3H11A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5210. Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZC3H11A MUTATED	3	1	1	0	0
ZC3H11A WILD-TYPE	29	17	11	10	10

'ZC3H11A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S5211. Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZC3H11A MUTATED	0	0	1	2	2
ZC3H11A WILD-TYPE	26	20	27	23	18

'ZC3H11A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5212. Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZC3H11A MUTATED	2	2	1
ZC3H11A WILD-TYPE	46	51	17

'ZC3H11A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S5213. Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZC3H11A MUTATED	0	4	0	1	0
ZC3H11A WILD-TYPE	37	27	17	20	13

'ZC3H11A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5214. Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZC3H11A MUTATED	3	1	1
ZC3H11A WILD-TYPE	68	26	20

'ZC3H11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 1

Table S5215. Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZC3H11A MUTATED	0	0	2	0	0	3	0
ZC3H11A WILD-TYPE	18	8	8	8	36	22	12

Figure S228. Get High-res Image Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZC3H11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S5216. Gene #546: 'ZC3H11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZC3H11A MUTATED	0	1	1	2	1	0
ZC3H11A WILD-TYPE	17	31	12	30	15	7

'ANKRD49 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5217. Gene #547: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ANKRD49 MUTATED	0	2	1	0
ANKRD49 WILD-TYPE	19	51	29	24

'ANKRD49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 1

Table S5218. Gene #547: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ANKRD49 MUTATED	3	0	0	0
ANKRD49 WILD-TYPE	32	30	34	26

'ANKRD49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S5219. Gene #547: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ANKRD49 MUTATED	0	1	1	1	0
ANKRD49 WILD-TYPE	29	17	12	8	13

'ANKRD49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S5220. Gene #547: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ANKRD49 MUTATED	1	1	1	0	0
ANKRD49 WILD-TYPE	31	17	11	10	10

'ANKRD49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S5221. Gene #547: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ANKRD49 MUTATED	1	1	0	1	0
ANKRD49 WILD-TYPE	25	19	28	24	20

'ANKRD49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S5222. Gene #547: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ANKRD49 MUTATED	2	1	0
ANKRD49 WILD-TYPE	46	52	18

'ANKRD49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S5223. Gene #547: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ANKRD49 MUTATED	1	0	1	1	0
ANKRD49 WILD-TYPE	36	31	16	20	13

'ANKRD49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5224. Gene #547: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ANKRD49 MUTATED	2	1	0
ANKRD49 WILD-TYPE	69	26	21

'ANKRD49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S5225. Gene #547: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ANKRD49 MUTATED	1	0	1	0	0	1	0
ANKRD49 WILD-TYPE	17	8	9	8	36	24	12

'ANKRD49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S5226. Gene #547: 'ANKRD49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ANKRD49 MUTATED	0	1	0	2	0	0
ANKRD49 WILD-TYPE	17	31	13	30	16	7

'NDUFV2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S5227. Gene #548: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NDUFV2 MUTATED	0	1	0	2
NDUFV2 WILD-TYPE	19	52	30	22

'NDUFV2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S5228. Gene #548: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NDUFV2 MUTATED	2	0	1	0
NDUFV2 WILD-TYPE	33	30	33	26

'NDUFV2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S5229. Gene #548: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NDUFV2 MUTATED	3	0	0	0	0
NDUFV2 WILD-TYPE	26	18	13	9	13

'NDUFV2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S5230. Gene #548: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NDUFV2 MUTATED	3	0	0	0	0
NDUFV2 WILD-TYPE	29	18	12	10	10

'NDUFV2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S5231. Gene #548: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NDUFV2 MUTATED	1	0	2	0	0
NDUFV2 WILD-TYPE	25	20	26	25	20

'NDUFV2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S5232. Gene #548: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NDUFV2 MUTATED	0	3	0
NDUFV2 WILD-TYPE	48	50	18

'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S5233. Gene #548: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NDUFV2 MUTATED	3	0	0	0	0
NDUFV2 WILD-TYPE	34	31	17	21	13

'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S5234. Gene #548: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NDUFV2 MUTATED	3	0	0
NDUFV2 WILD-TYPE	68	27	21

'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S5235. Gene #548: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NDUFV2 MUTATED	0	0	0	0	3	0	0
NDUFV2 WILD-TYPE	18	8	10	8	33	25	12

'NDUFV2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S5236. Gene #548: 'NDUFV2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NDUFV2 MUTATED	0	3	0	0	0	0
NDUFV2 WILD-TYPE	17	29	13	32	16	7

'PPP1R12C MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5237. Gene #549: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PPP1R12C MUTATED	0	2	1	1
PPP1R12C WILD-TYPE	19	51	29	23

'PPP1R12C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S5238. Gene #549: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PPP1R12C MUTATED	2	0	1	1
PPP1R12C WILD-TYPE	33	30	33	25

'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S5239. Gene #549: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PPP1R12C MUTATED	2	0	0	1	1
PPP1R12C WILD-TYPE	24	20	28	24	19

'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S5240. Gene #549: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PPP1R12C MUTATED	1	2	1
PPP1R12C WILD-TYPE	47	51	17

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S5241. Gene #549: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PPP1R12C MUTATED	0	1	0	2	1
PPP1R12C WILD-TYPE	37	30	17	19	12

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S5242. Gene #549: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PPP1R12C MUTATED	3	0	1
PPP1R12C WILD-TYPE	68	27	20

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00592 (Fisher's exact test), Q value = 1

Table S5243. Gene #549: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PPP1R12C MUTATED	0	1	2	1	0	0	0
PPP1R12C WILD-TYPE	18	7	8	7	36	25	12

Figure S229. Get High-res Image Gene #549: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S5244. Gene #549: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PPP1R12C MUTATED	1	0	1	1	1	0
PPP1R12C WILD-TYPE	16	32	12	31	15	7

'CCDC74A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S5245. Gene #550: 'CCDC74A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCDC74A MUTATED	1	1	1	1
CCDC74A WILD-TYPE	18	52	29	23

'CCDC74A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5246. Gene #550: 'CCDC74A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCDC74A MUTATED	1	1	1	1
CCDC74A WILD-TYPE	34	29	33	25

'CCDC74A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S5247. Gene #550: 'CCDC74A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CCDC74A MUTATED	1	1	0	1	0
CCDC74A WILD-TYPE	28	17	13	8	13

'CCDC74A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5248. Gene #550: 'CCDC74A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CCDC74A MUTATED	2	1	0	0	0
CCDC74A WILD-TYPE	30	17	12	10	10

'CCDC74A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S5249. Gene #550: 'CCDC74A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCDC74A MUTATED	1	0	0	2	1
CCDC74A WILD-TYPE	25	20	28	23	19

'CCDC74A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S5250. Gene #550: 'CCDC74A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCDC74A MUTATED	3	0	1
CCDC74A WILD-TYPE	45	53	17

'CCDC74A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S5251. Gene #550: 'CCDC74A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCDC74A MUTATED	1	0	1	1	1
CCDC74A WILD-TYPE	36	31	16	20	12

'CCDC74A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S5252. Gene #550: 'CCDC74A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCDC74A MUTATED	2	1	1
CCDC74A WILD-TYPE	69	26	20

'CCDC74A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S5253. Gene #550: 'CCDC74A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCDC74A MUTATED	1	0	1	1	1	0	0
CCDC74A WILD-TYPE	17	8	9	7	35	25	12

'CCDC74A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S5254. Gene #550: 'CCDC74A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCDC74A MUTATED	1	0	0	2	1	0
CCDC74A WILD-TYPE	16	32	13	30	15	7

'C3ORF15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 1

Table S5255. Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C3ORF15 MUTATED	2	0	2	0
C3ORF15 WILD-TYPE	17	53	28	24

Figure S230. Get High-res Image Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C3ORF15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S5256. Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C3ORF15 MUTATED	2	1	1	0
C3ORF15 WILD-TYPE	33	29	33	26

'C3ORF15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S5257. Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
C3ORF15 MUTATED	1	1	1	1	0
C3ORF15 WILD-TYPE	28	17	12	8	13

'C3ORF15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5258. Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
C3ORF15 MUTATED	2	1	1	0	0
C3ORF15 WILD-TYPE	30	17	11	10	10

'C3ORF15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S5259. Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C3ORF15 MUTATED	0	1	1	2	0
C3ORF15 WILD-TYPE	26	19	27	23	20

'C3ORF15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S5260. Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C3ORF15 MUTATED	2	1	1
C3ORF15 WILD-TYPE	46	52	17

'C3ORF15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S5261. Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C3ORF15 MUTATED	1	0	1	1	1
C3ORF15 WILD-TYPE	36	31	16	20	12

'C3ORF15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S5262. Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C3ORF15 MUTATED	2	1	1
C3ORF15 WILD-TYPE	69	26	20

'C3ORF15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S5263. Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C3ORF15 MUTATED	1	0	1	0	1	0	1
C3ORF15 WILD-TYPE	17	8	9	8	35	25	11

'C3ORF15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S5264. Gene #551: 'C3ORF15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C3ORF15 MUTATED	0	1	0	2	1	0
C3ORF15 WILD-TYPE	17	31	13	30	15	7

'DCX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 1

Table S5265. Gene #552: 'DCX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DCX MUTATED	1	0	0	2
DCX WILD-TYPE	18	53	30	22

'DCX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S5266. Gene #552: 'DCX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DCX MUTATED	2	1	0	0
DCX WILD-TYPE	33	29	34	26

'DCX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S5267. Gene #552: 'DCX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DCX MUTATED	0	0	1	1	1
DCX WILD-TYPE	26	20	27	24	19

'DCX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5268. Gene #552: 'DCX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DCX MUTATED	1	2	0
DCX WILD-TYPE	47	51	18

'DCX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S5269. Gene #552: 'DCX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DCX MUTATED	1	1	1	0	0
DCX WILD-TYPE	36	30	16	21	13

'DCX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5270. Gene #552: 'DCX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DCX MUTATED	2	1	0
DCX WILD-TYPE	69	26	21

'DCX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S5271. Gene #552: 'DCX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DCX MUTATED	0	0	0	1	2	0	0
DCX WILD-TYPE	18	8	10	7	34	25	12

'DCX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S5272. Gene #552: 'DCX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DCX MUTATED	0	1	1	1	0	0
DCX WILD-TYPE	17	31	12	31	16	7

'HMGCR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S5273. Gene #553: 'HMGCR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HMGCR MUTATED	1	4	1	0
HMGCR WILD-TYPE	18	49	29	24

'HMGCR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S5274. Gene #553: 'HMGCR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HMGCR MUTATED	3	2	1	0
HMGCR WILD-TYPE	32	28	33	26

'HMGCR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S5275. Gene #553: 'HMGCR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HMGCR MUTATED	1	0	1	1	0
HMGCR WILD-TYPE	28	18	12	8	13

'HMGCR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S5276. Gene #553: 'HMGCR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HMGCR MUTATED	2	0	1	0	0
HMGCR WILD-TYPE	30	18	11	10	10

'HMGCR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S5277. Gene #553: 'HMGCR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HMGCR MUTATED	1	1	2	2	0
HMGCR WILD-TYPE	25	19	26	23	20

'HMGCR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S5278. Gene #553: 'HMGCR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HMGCR MUTATED	3	2	1
HMGCR WILD-TYPE	45	51	17

'HMGCR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S5279. Gene #553: 'HMGCR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HMGCR MUTATED	2	0	1	3	0
HMGCR WILD-TYPE	35	31	16	18	13

'HMGCR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5280. Gene #553: 'HMGCR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HMGCR MUTATED	4	1	1
HMGCR WILD-TYPE	67	26	20

'HMGCR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S5281. Gene #553: 'HMGCR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HMGCR MUTATED	1	0	2	0	2	0	1
HMGCR WILD-TYPE	17	8	8	8	34	25	11

'HMGCR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S5282. Gene #553: 'HMGCR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HMGCR MUTATED	1	2	0	2	0	1
HMGCR WILD-TYPE	16	30	13	30	16	6

'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S5283. Gene #554: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ITPR2 MUTATED	0	3	1	1
ITPR2 WILD-TYPE	19	50	29	23

'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S5284. Gene #554: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ITPR2 MUTATED	3	0	1	1
ITPR2 WILD-TYPE	32	30	33	25

'ITPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S5285. Gene #554: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ITPR2 MUTATED	1	1	0	1	0
ITPR2 WILD-TYPE	28	17	13	8	13

'ITPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5286. Gene #554: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ITPR2 MUTATED	2	1	0	0	0
ITPR2 WILD-TYPE	30	17	12	10	10

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S5287. Gene #554: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ITPR2 MUTATED	2	0	1	1	1
ITPR2 WILD-TYPE	24	20	27	24	19

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S5288. Gene #554: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ITPR2 MUTATED	1	3	1
ITPR2 WILD-TYPE	47	50	17

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S5289. Gene #554: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ITPR2 MUTATED	3	0	0	1	1
ITPR2 WILD-TYPE	34	31	17	20	12

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S5290. Gene #554: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ITPR2 MUTATED	4	0	1
ITPR2 WILD-TYPE	67	27	20

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S5291. Gene #554: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ITPR2 MUTATED	0	0	1	1	2	1	0
ITPR2 WILD-TYPE	18	8	9	7	34	24	12

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5292. Gene #554: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ITPR2 MUTATED	1	2	0	1	1	0
ITPR2 WILD-TYPE	16	30	13	31	15	7

'FZD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S5293. Gene #555: 'FZD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FZD7 MUTATED	2	1	1	0
FZD7 WILD-TYPE	17	52	29	24

'FZD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S5294. Gene #555: 'FZD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FZD7 MUTATED	2	1	0	1
FZD7 WILD-TYPE	33	29	34	25

'FZD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S5295. Gene #555: 'FZD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FZD7 MUTATED	1	1	1	0	1
FZD7 WILD-TYPE	25	19	27	25	19

'FZD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S5296. Gene #555: 'FZD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FZD7 MUTATED	0	3	1
FZD7 WILD-TYPE	48	50	17

'FZD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S5297. Gene #555: 'FZD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FZD7 MUTATED	1	1	0	2	0
FZD7 WILD-TYPE	36	30	17	19	13

'FZD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S5298. Gene #555: 'FZD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FZD7 MUTATED	3	0	1
FZD7 WILD-TYPE	68	27	20

'FZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S5299. Gene #555: 'FZD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FZD7 MUTATED	0	1	0	1	1	0	1
FZD7 WILD-TYPE	18	7	10	7	35	25	11

'FZD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 1

Table S5300. Gene #555: 'FZD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FZD7 MUTATED	2	0	1	0	0	1
FZD7 WILD-TYPE	15	32	12	32	16	6

Figure S231. Get High-res Image Gene #555: 'FZD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TGFBR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 1

Table S5301. Gene #556: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TGFBR1 MUTATED	3	1	2	0
TGFBR1 WILD-TYPE	16	52	28	24

'TGFBR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S5302. Gene #556: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TGFBR1 MUTATED	1	3	1	1
TGFBR1 WILD-TYPE	34	27	33	25

'TGFBR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S5303. Gene #556: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TGFBR1 MUTATED	1	1	1	1	1
TGFBR1 WILD-TYPE	28	17	12	8	12

'TGFBR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5304. Gene #556: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TGFBR1 MUTATED	3	1	1	0	0
TGFBR1 WILD-TYPE	29	17	11	10	10

'TGFBR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S5305. Gene #556: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TGFBR1 MUTATED	1	0	0	3	1
TGFBR1 WILD-TYPE	25	20	28	22	19

'TGFBR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 1

Table S5306. Gene #556: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TGFBR1 MUTATED	4	0	1
TGFBR1 WILD-TYPE	44	53	17

'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S5307. Gene #556: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TGFBR1 MUTATED	1	1	2	1	0
TGFBR1 WILD-TYPE	36	30	15	20	13

'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S5308. Gene #556: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TGFBR1 MUTATED	3	2	0
TGFBR1 WILD-TYPE	68	25	21

'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S5309. Gene #556: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TGFBR1 MUTATED	1	0	1	0	1	1	1
TGFBR1 WILD-TYPE	17	8	9	8	35	24	11

'TGFBR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S5310. Gene #556: 'TGFBR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TGFBR1 MUTATED	2	0	0	3	0	0
TGFBR1 WILD-TYPE	15	32	13	29	16	7

'LRRC41 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5311. Gene #557: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LRRC41 MUTATED	0	2	1	0
LRRC41 WILD-TYPE	19	51	29	24

'LRRC41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S5312. Gene #557: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LRRC41 MUTATED	1	0	1	1
LRRC41 WILD-TYPE	34	30	33	25

'LRRC41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S5313. Gene #557: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LRRC41 MUTATED	2	0	0	0	1
LRRC41 WILD-TYPE	24	20	28	25	19

'LRRC41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S5314. Gene #557: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LRRC41 MUTATED	2	1	0
LRRC41 WILD-TYPE	46	52	18

'LRRC41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5315. Gene #557: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LRRC41 MUTATED	1	1	0	1	0
LRRC41 WILD-TYPE	36	30	17	20	13

'LRRC41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S5316. Gene #557: 'LRRC41 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LRRC41 MUTATED	2	0	1
LRRC41 WILD-TYPE	69	27	20

'STAG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S5317. Gene #558: 'STAG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
STAG3 MUTATED	0	1	3	1
STAG3 WILD-TYPE	19	52	27	23

'STAG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S5318. Gene #558: 'STAG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
STAG3 MUTATED	1	0	2	2
STAG3 WILD-TYPE	34	30	32	24

'STAG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S5319. Gene #558: 'STAG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
STAG3 MUTATED	0	1	0	1	1
STAG3 WILD-TYPE	29	17	13	8	12

'STAG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5320. Gene #558: 'STAG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
STAG3 MUTATED	2	1	0	0	0
STAG3 WILD-TYPE	30	17	12	10	10

'STAG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S5321. Gene #558: 'STAG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
STAG3 MUTATED	0	0	2	2	1
STAG3 WILD-TYPE	26	20	26	23	19

'STAG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5322. Gene #558: 'STAG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
STAG3 MUTATED	2	2	1
STAG3 WILD-TYPE	46	51	17

'STAG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S5323. Gene #558: 'STAG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
STAG3 MUTATED	1	3	0	1	0
STAG3 WILD-TYPE	36	28	17	20	13

'STAG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S5324. Gene #558: 'STAG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
STAG3 MUTATED	4	1	0
STAG3 WILD-TYPE	67	26	21

'STAG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S5325. Gene #558: 'STAG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
STAG3 MUTATED	0	0	2	0	1	1	1
STAG3 WILD-TYPE	18	8	8	8	35	24	11

'STAG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S5326. Gene #558: 'STAG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
STAG3 MUTATED	1	2	0	2	0	0
STAG3 WILD-TYPE	16	30	13	30	16	7

'PSME4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S5327. Gene #559: 'PSME4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PSME4 MUTATED	0	2	2	1
PSME4 WILD-TYPE	19	51	28	23

'PSME4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S5328. Gene #559: 'PSME4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PSME4 MUTATED	2	0	2	1
PSME4 WILD-TYPE	33	30	32	25

'PSME4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S5329. Gene #559: 'PSME4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PSME4 MUTATED	1	0	1	1	0
PSME4 WILD-TYPE	28	18	12	8	13

'PSME4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S5330. Gene #559: 'PSME4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PSME4 MUTATED	2	0	1	0	0
PSME4 WILD-TYPE	30	18	11	10	10

'PSME4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S5331. Gene #559: 'PSME4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PSME4 MUTATED	0	1	2	1	1
PSME4 WILD-TYPE	26	19	26	24	19

'PSME4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S5332. Gene #559: 'PSME4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PSME4 MUTATED	2	3	0
PSME4 WILD-TYPE	46	50	18

'PSME4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S5333. Gene #559: 'PSME4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PSME4 MUTATED	2	2	0	1	0
PSME4 WILD-TYPE	35	29	17	20	13

'PSME4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S5334. Gene #559: 'PSME4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PSME4 MUTATED	4	0	1
PSME4 WILD-TYPE	67	27	20

'PSME4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S5335. Gene #559: 'PSME4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PSME4 MUTATED	0	0	1	0	1	3	0
PSME4 WILD-TYPE	18	8	9	8	35	22	12

'PSME4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S5336. Gene #559: 'PSME4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PSME4 MUTATED	0	3	0	1	1	0
PSME4 WILD-TYPE	17	29	13	31	15	7

'LILRA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 1

Table S5337. Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LILRA2 MUTATED	1	1	2	1
LILRA2 WILD-TYPE	18	52	28	23

'LILRA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S5338. Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LILRA2 MUTATED	3	0	1	1
LILRA2 WILD-TYPE	32	30	33	25

'LILRA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S5339. Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
LILRA2 MUTATED	2	0	0	1	0
LILRA2 WILD-TYPE	27	18	13	8	13

'LILRA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S5340. Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
LILRA2 MUTATED	3	0	0	0	0
LILRA2 WILD-TYPE	29	18	12	10	10

'LILRA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 1

Table S5341. Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LILRA2 MUTATED	2	0	0	3	0
LILRA2 WILD-TYPE	24	20	28	22	20

'LILRA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S5342. Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LILRA2 MUTATED	3	2	0
LILRA2 WILD-TYPE	45	51	18

'LILRA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 1

Table S5343. Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LILRA2 MUTATED	0	1	0	3	1
LILRA2 WILD-TYPE	37	30	17	18	12

'LILRA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S5344. Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LILRA2 MUTATED	4	1	0
LILRA2 WILD-TYPE	67	26	21

'LILRA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00415 (Fisher's exact test), Q value = 1

Table S5345. Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LILRA2 MUTATED	2	0	3	0	0	0	0
LILRA2 WILD-TYPE	16	8	7	8	36	25	12

Figure S232. Get High-res Image Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'LILRA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S5346. Gene #560: 'LILRA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LILRA2 MUTATED	2	0	0	3	0	0
LILRA2 WILD-TYPE	15	32	13	29	16	7

'ATP2C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S5347. Gene #561: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ATP2C2 MUTATED	0	2	2	0
ATP2C2 WILD-TYPE	19	51	28	24

'ATP2C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S5348. Gene #561: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ATP2C2 MUTATED	3	0	0	1
ATP2C2 WILD-TYPE	32	30	34	25

'ATP2C2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 1

Table S5349. Gene #561: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ATP2C2 MUTATED	1	0	0	2	0
ATP2C2 WILD-TYPE	28	18	13	7	13

'ATP2C2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S5350. Gene #561: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ATP2C2 MUTATED	2	0	0	1	0
ATP2C2 WILD-TYPE	30	18	12	9	10

'ATP2C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S5351. Gene #561: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ATP2C2 MUTATED	1	1	0	1	1
ATP2C2 WILD-TYPE	25	19	28	24	19

'ATP2C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S5352. Gene #561: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ATP2C2 MUTATED	3	1	0
ATP2C2 WILD-TYPE	45	52	18

'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S5353. Gene #561: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ATP2C2 MUTATED	0	1	0	2	1
ATP2C2 WILD-TYPE	37	30	17	19	12

'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S5354. Gene #561: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ATP2C2 MUTATED	1	2	1
ATP2C2 WILD-TYPE	70	25	20

'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S5355. Gene #561: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ATP2C2 MUTATED	1	0	1	0	0	2	0
ATP2C2 WILD-TYPE	17	8	9	8	36	23	12

'ATP2C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S5356. Gene #561: 'ATP2C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ATP2C2 MUTATED	0	0	0	2	2	0
ATP2C2 WILD-TYPE	17	32	13	30	14	7

'KIAA1211 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S5357. Gene #562: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KIAA1211 MUTATED	1	1	1	2
KIAA1211 WILD-TYPE	18	52	29	22

'KIAA1211 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S5358. Gene #562: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KIAA1211 MUTATED	1	0	1	3
KIAA1211 WILD-TYPE	34	30	33	23

'KIAA1211 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S5359. Gene #562: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KIAA1211 MUTATED	0	1	1	1	2
KIAA1211 WILD-TYPE	26	19	27	24	18

'KIAA1211 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S5360. Gene #562: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KIAA1211 MUTATED	1	2	2
KIAA1211 WILD-TYPE	47	51	16

'KIAA1211 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S5361. Gene #562: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KIAA1211 MUTATED	1	1	0	1	2
KIAA1211 WILD-TYPE	36	30	17	20	11

'KIAA1211 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S5362. Gene #562: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KIAA1211 MUTATED	3	0	2
KIAA1211 WILD-TYPE	68	27	19

'KIAA1211 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 1

Table S5363. Gene #562: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KIAA1211 MUTATED	0	1	1	2	0	1	0
KIAA1211 WILD-TYPE	18	7	9	6	36	24	12

Figure S233. Get High-res Image Gene #562: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA1211 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S5364. Gene #562: 'KIAA1211 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KIAA1211 MUTATED	1	0	1	1	2	0
KIAA1211 WILD-TYPE	16	32	12	31	14	7

'LPIN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S5365. Gene #563: 'LPIN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LPIN3 MUTATED	0	3	0	1
LPIN3 WILD-TYPE	19	50	30	23

'LPIN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 1

Table S5366. Gene #563: 'LPIN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LPIN3 MUTATED	0	3	1	0
LPIN3 WILD-TYPE	35	27	33	26

'LPIN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S5367. Gene #563: 'LPIN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LPIN3 MUTATED	0	2	1	1	0
LPIN3 WILD-TYPE	26	18	27	24	20

'LPIN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S5368. Gene #563: 'LPIN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LPIN3 MUTATED	1	1	2
LPIN3 WILD-TYPE	47	52	16

'LPIN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S5369. Gene #563: 'LPIN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LPIN3 MUTATED	1	0	1	2	0
LPIN3 WILD-TYPE	36	31	16	19	13

'LPIN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S5370. Gene #563: 'LPIN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LPIN3 MUTATED	1	1	2
LPIN3 WILD-TYPE	70	26	19

'LPIN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S5371. Gene #563: 'LPIN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LPIN3 MUTATED	0	0	0	0	2	0	2
LPIN3 WILD-TYPE	18	8	10	8	34	25	10

'LPIN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0546 (Fisher's exact test), Q value = 1

Table S5372. Gene #563: 'LPIN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LPIN3 MUTATED	0	1	0	1	0	2
LPIN3 WILD-TYPE	17	31	13	31	16	5

'WDR8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 1

Table S5373. Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
WDR8 MUTATED	0	2	2	0
WDR8 WILD-TYPE	19	51	28	24

'WDR8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S5374. Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
WDR8 MUTATED	2	0	1	1
WDR8 WILD-TYPE	33	30	33	25

'WDR8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S5375. Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
WDR8 MUTATED	1	0	0	1	1
WDR8 WILD-TYPE	28	18	13	8	12

'WDR8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S5376. Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
WDR8 MUTATED	2	0	0	0	1
WDR8 WILD-TYPE	30	18	12	10	9

'WDR8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5377. Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
WDR8 MUTATED	1	0	1	1	1
WDR8 WILD-TYPE	25	20	27	24	19

'WDR8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S5378. Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
WDR8 MUTATED	1	2	1
WDR8 WILD-TYPE	47	51	17

'WDR8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S5379. Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
WDR8 MUTATED	1	2	0	1	0
WDR8 WILD-TYPE	36	29	17	20	13

'WDR8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S5380. Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
WDR8 MUTATED	3	0	1
WDR8 WILD-TYPE	68	27	20

'WDR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 1

Table S5381. Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
WDR8 MUTATED	0	2	1	0	0	1	0
WDR8 WILD-TYPE	18	6	9	8	36	24	12

Figure S234. Get High-res Image Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WDR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S5382. Gene #564: 'WDR8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
WDR8 MUTATED	0	1	1	1	1	0
WDR8 WILD-TYPE	17	31	12	31	15	7

'ASH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S5383. Gene #565: 'ASH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ASH1L MUTATED	0	3	1	2
ASH1L WILD-TYPE	19	50	29	22

'ASH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S5384. Gene #565: 'ASH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ASH1L MUTATED	4	0	1	1
ASH1L WILD-TYPE	31	30	33	25

'ASH1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S5385. Gene #565: 'ASH1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ASH1L MUTATED	3	0	0	1	0
ASH1L WILD-TYPE	26	18	13	8	13

'ASH1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S5386. Gene #565: 'ASH1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ASH1L MUTATED	4	0	0	0	0
ASH1L WILD-TYPE	28	18	12	10	10

'ASH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S5387. Gene #565: 'ASH1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ASH1L MUTATED	1	3	0	1	1
ASH1L WILD-TYPE	25	17	28	24	19

'ASH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S5388. Gene #565: 'ASH1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ASH1L MUTATED	2	4	0
ASH1L WILD-TYPE	46	49	18

'ASH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S5389. Gene #565: 'ASH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ASH1L MUTATED	2	1	0	1	2
ASH1L WILD-TYPE	35	30	17	20	11

'ASH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S5390. Gene #565: 'ASH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ASH1L MUTATED	4	0	2
ASH1L WILD-TYPE	67	27	19

'ASH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S5391. Gene #565: 'ASH1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ASH1L MUTATED	0	0	1	0	1	4	0
ASH1L WILD-TYPE	18	8	9	8	35	21	12

'ASH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S5392. Gene #565: 'ASH1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ASH1L MUTATED	0	2	1	1	2	0
ASH1L WILD-TYPE	17	30	12	31	14	7

'SPINT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S5393. Gene #566: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SPINT1 MUTATED	0	1	1	1
SPINT1 WILD-TYPE	19	52	29	23

'SPINT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S5394. Gene #566: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SPINT1 MUTATED	0	1	1	1
SPINT1 WILD-TYPE	35	29	33	25

'SPINT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S5395. Gene #566: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SPINT1 MUTATED	2	0	1	0	0
SPINT1 WILD-TYPE	27	18	12	9	13

'SPINT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S5396. Gene #566: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SPINT1 MUTATED	2	0	0	0	1
SPINT1 WILD-TYPE	30	18	12	10	9

'SPINT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S5397. Gene #566: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SPINT1 MUTATED	1	0	0	1	1
SPINT1 WILD-TYPE	25	20	28	24	19

'SPINT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S5398. Gene #566: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SPINT1 MUTATED	2	1	0
SPINT1 WILD-TYPE	46	52	18

'SPINT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S5399. Gene #566: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SPINT1 MUTATED	1	1	1	0	0
SPINT1 WILD-TYPE	36	30	16	21	13

'SPINT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5400. Gene #566: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SPINT1 MUTATED	2	1	0
SPINT1 WILD-TYPE	69	26	21

'SPINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5401. Gene #566: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SPINT1 MUTATED	0	0	1	0	1	1	0
SPINT1 WILD-TYPE	18	8	9	8	35	24	12

'SPINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S5402. Gene #566: 'SPINT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SPINT1 MUTATED	1	0	0	1	1	0
SPINT1 WILD-TYPE	16	32	13	31	15	7

'SARS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 1

Table S5403. Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SARS2 MUTATED	3	1	0	0
SARS2 WILD-TYPE	16	52	30	24

Figure S235. Get High-res Image Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SARS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 1

Table S5404. Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SARS2 MUTATED	2	0	2	0
SARS2 WILD-TYPE	33	30	32	26

'SARS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S5405. Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SARS2 MUTATED	1	1	0	1	0
SARS2 WILD-TYPE	28	17	13	8	13

'SARS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S5406. Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SARS2 MUTATED	1	1	0	1	0
SARS2 WILD-TYPE	31	17	12	9	10

'SARS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S5407. Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SARS2 MUTATED	2	0	1	1	0
SARS2 WILD-TYPE	24	20	27	24	20

'SARS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5408. Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SARS2 MUTATED	2	2	0
SARS2 WILD-TYPE	46	51	18

'SARS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S5409. Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SARS2 MUTATED	4	0	0	0	0
SARS2 WILD-TYPE	33	31	17	21	13

'SARS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5410. Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SARS2 MUTATED	3	1	0
SARS2 WILD-TYPE	68	26	21

'SARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S5411. Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SARS2 MUTATED	1	0	0	0	3	0	0
SARS2 WILD-TYPE	17	8	10	8	33	25	12

'SARS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S5412. Gene #567: 'SARS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SARS2 MUTATED	1	2	0	1	0	0
SARS2 WILD-TYPE	16	30	13	31	16	7

'DNAH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S5413. Gene #568: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DNAH7 MUTATED	0	3	2	3
DNAH7 WILD-TYPE	19	50	28	21

'DNAH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S5414. Gene #568: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DNAH7 MUTATED	3	2	1	2
DNAH7 WILD-TYPE	32	28	33	24

'DNAH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5415. Gene #568: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DNAH7 MUTATED	2	1	1	1	1
DNAH7 WILD-TYPE	27	17	12	8	12

'DNAH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S5416. Gene #568: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DNAH7 MUTATED	3	1	0	0	2
DNAH7 WILD-TYPE	29	17	12	10	8

'DNAH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S5417. Gene #568: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DNAH7 MUTATED	1	1	1	2	1
DNAH7 WILD-TYPE	25	19	27	23	19

'DNAH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S5418. Gene #568: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DNAH7 MUTATED	3	2	1
DNAH7 WILD-TYPE	45	51	17

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S5419. Gene #568: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DNAH7 MUTATED	2	1	1	1	1
DNAH7 WILD-TYPE	35	30	16	20	12

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5420. Gene #568: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DNAH7 MUTATED	4	1	1
DNAH7 WILD-TYPE	67	26	20

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 1

Table S5421. Gene #568: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DNAH7 MUTATED	0	0	1	0	3	2	0
DNAH7 WILD-TYPE	18	8	9	8	33	23	12

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S5422. Gene #568: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DNAH7 MUTATED	0	2	1	2	1	0
DNAH7 WILD-TYPE	17	30	12	30	15	7

'XIRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S5423. Gene #569: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
XIRP2 MUTATED	1	2	1	2
XIRP2 WILD-TYPE	18	51	29	22

'XIRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5424. Gene #569: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
XIRP2 MUTATED	2	1	2	1
XIRP2 WILD-TYPE	33	29	32	25

'XIRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S5425. Gene #569: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
XIRP2 MUTATED	1	1	0	1	1
XIRP2 WILD-TYPE	28	17	13	8	12

'XIRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S5426. Gene #569: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
XIRP2 MUTATED	2	0	0	0	2
XIRP2 WILD-TYPE	30	18	12	10	8

'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S5427. Gene #569: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
XIRP2 MUTATED	0	0	1	2	2
XIRP2 WILD-TYPE	26	20	27	23	18

'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S5428. Gene #569: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
XIRP2 MUTATED	3	2	0
XIRP2 WILD-TYPE	45	51	18

'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S5429. Gene #569: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
XIRP2 MUTATED	1	2	1	1	0
XIRP2 WILD-TYPE	36	29	16	20	13

'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5430. Gene #569: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
XIRP2 MUTATED	3	1	1
XIRP2 WILD-TYPE	68	26	20

'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S5431. Gene #569: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
XIRP2 MUTATED	0	0	2	1	2	0	0
XIRP2 WILD-TYPE	18	8	8	7	34	25	12

'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S5432. Gene #569: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
XIRP2 MUTATED	0	1	1	2	1	0
XIRP2 WILD-TYPE	17	31	12	30	15	7

'SLC4A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S5433. Gene #570: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC4A5 MUTATED	1	0	1	2
SLC4A5 WILD-TYPE	18	53	29	22

'SLC4A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S5434. Gene #570: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC4A5 MUTATED	1	1	2	0
SLC4A5 WILD-TYPE	34	29	32	26

'SLC4A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S5435. Gene #570: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC4A5 MUTATED	1	0	1	2	0
SLC4A5 WILD-TYPE	25	20	27	23	20

'SLC4A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S5436. Gene #570: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC4A5 MUTATED	3	1	0
SLC4A5 WILD-TYPE	45	52	18

'SLC4A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S5437. Gene #570: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC4A5 MUTATED	1	0	2	1	0
SLC4A5 WILD-TYPE	36	31	15	20	13

'SLC4A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S5438. Gene #570: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC4A5 MUTATED	2	2	0
SLC4A5 WILD-TYPE	69	25	21

'SLC4A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S5439. Gene #570: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC4A5 MUTATED	1	0	1	0	2	0	0
SLC4A5 WILD-TYPE	17	8	9	8	34	25	12

'SLC4A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S5440. Gene #570: 'SLC4A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC4A5 MUTATED	0	1	0	3	0	0
SLC4A5 WILD-TYPE	17	31	13	29	16	7

'BTN2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S5441. Gene #571: 'BTN2A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BTN2A2 MUTATED	0	1	1	1
BTN2A2 WILD-TYPE	19	52	29	23

'BTN2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S5442. Gene #571: 'BTN2A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BTN2A2 MUTATED	0	1	2	0
BTN2A2 WILD-TYPE	35	29	32	26

'BTN2A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S5443. Gene #571: 'BTN2A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BTN2A2 MUTATED	1	1	1	0	0
BTN2A2 WILD-TYPE	28	17	12	9	13

'BTN2A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5444. Gene #571: 'BTN2A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BTN2A2 MUTATED	2	1	0	0	0
BTN2A2 WILD-TYPE	30	17	12	10	10

'BTN2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S5445. Gene #571: 'BTN2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BTN2A2 MUTATED	0	0	2	1	0
BTN2A2 WILD-TYPE	26	20	26	24	20

'BTN2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5446. Gene #571: 'BTN2A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BTN2A2 MUTATED	1	2	0
BTN2A2 WILD-TYPE	47	51	18

'BTN2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S5447. Gene #571: 'BTN2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BTN2A2 MUTATED	1	1	1	0	0
BTN2A2 WILD-TYPE	36	30	16	21	13

'BTN2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5448. Gene #571: 'BTN2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BTN2A2 MUTATED	2	1	0
BTN2A2 WILD-TYPE	69	26	21

'BTN2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5449. Gene #571: 'BTN2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BTN2A2 MUTATED	1	0	0	0	1	1	0
BTN2A2 WILD-TYPE	17	8	10	8	35	24	12

'BTN2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S5450. Gene #571: 'BTN2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BTN2A2 MUTATED	0	2	0	1	0	0
BTN2A2 WILD-TYPE	17	30	13	31	16	7

'SV2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 1

Table S5451. Gene #572: 'SV2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SV2A MUTATED	2	0	2	0
SV2A WILD-TYPE	17	53	28	24

Figure S236. Get High-res Image Gene #572: 'SV2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SV2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S5452. Gene #572: 'SV2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SV2A MUTATED	3	1	0	0
SV2A WILD-TYPE	32	29	34	26

'SV2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S5453. Gene #572: 'SV2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SV2A MUTATED	2	0	0	2	0
SV2A WILD-TYPE	24	20	28	23	20

'SV2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S5454. Gene #572: 'SV2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SV2A MUTATED	3	1	0
SV2A WILD-TYPE	45	52	18

'SV2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S5455. Gene #572: 'SV2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SV2A MUTATED	2	0	1	1	0
SV2A WILD-TYPE	35	31	16	20	13

'SV2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5456. Gene #572: 'SV2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SV2A MUTATED	3	1	0
SV2A WILD-TYPE	68	26	21

'SV2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S5457. Gene #572: 'SV2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SV2A MUTATED	1	0	1	0	0	1	0
SV2A WILD-TYPE	17	8	9	8	36	24	12

'SV2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S5458. Gene #572: 'SV2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SV2A MUTATED	1	0	0	2	0	0
SV2A WILD-TYPE	16	32	13	30	16	7

'MORC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S5459. Gene #573: 'MORC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MORC3 MUTATED	0	1	1	1
MORC3 WILD-TYPE	19	52	29	23

'MORC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S5460. Gene #573: 'MORC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MORC3 MUTATED	1	0	2	0
MORC3 WILD-TYPE	34	30	32	26

'MORC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S5461. Gene #573: 'MORC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
MORC3 MUTATED	0	2	0	1	0
MORC3 WILD-TYPE	29	16	13	8	13

'MORC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S5462. Gene #573: 'MORC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
MORC3 MUTATED	1	2	0	0	0
MORC3 WILD-TYPE	31	16	12	10	10

'MORC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S5463. Gene #573: 'MORC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MORC3 MUTATED	0	0	2	1	0
MORC3 WILD-TYPE	26	20	26	24	20

'MORC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5464. Gene #573: 'MORC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MORC3 MUTATED	1	2	0
MORC3 WILD-TYPE	47	51	18

'MORC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5465. Gene #573: 'MORC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MORC3 MUTATED	1	1	0	1	0
MORC3 WILD-TYPE	36	30	17	20	13

'MORC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S5466. Gene #573: 'MORC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MORC3 MUTATED	3	0	0
MORC3 WILD-TYPE	68	27	21

'MORC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5467. Gene #573: 'MORC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MORC3 MUTATED	0	0	1	0	1	1	0
MORC3 WILD-TYPE	18	8	9	8	35	24	12

'MORC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S5468. Gene #573: 'MORC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MORC3 MUTATED	0	2	0	1	0	0
MORC3 WILD-TYPE	17	30	13	31	16	7

'HABP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S5469. Gene #574: 'HABP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HABP4 MUTATED	1	1	2	0
HABP4 WILD-TYPE	18	52	28	24

'HABP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S5470. Gene #574: 'HABP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HABP4 MUTATED	2	0	1	1
HABP4 WILD-TYPE	33	30	33	25

'HABP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S5471. Gene #574: 'HABP4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HABP4 MUTATED	1	1	0	1	0
HABP4 WILD-TYPE	28	17	13	8	13

'HABP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5472. Gene #574: 'HABP4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HABP4 MUTATED	2	1	0	0	0
HABP4 WILD-TYPE	30	17	12	10	10

'HABP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S5473. Gene #574: 'HABP4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HABP4 MUTATED	1	0	0	2	1
HABP4 WILD-TYPE	25	20	28	23	19

'HABP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5474. Gene #574: 'HABP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HABP4 MUTATED	2	2	0
HABP4 WILD-TYPE	46	51	18

'HABP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5475. Gene #574: 'HABP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HABP4 MUTATED	2	1	0	1	0
HABP4 WILD-TYPE	35	30	17	20	13

'HABP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S5476. Gene #574: 'HABP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HABP4 MUTATED	4	0	0
HABP4 WILD-TYPE	67	27	21

'HABP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S5477. Gene #574: 'HABP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HABP4 MUTATED	0	0	1	1	2	0	0
HABP4 WILD-TYPE	18	8	9	7	34	25	12

'HABP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S5478. Gene #574: 'HABP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HABP4 MUTATED	0	1	1	2	0	0
HABP4 WILD-TYPE	17	31	12	30	16	7

'SLC5A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 1

Table S5479. Gene #575: 'SLC5A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLC5A3 MUTATED	2	0	1	1
SLC5A3 WILD-TYPE	17	53	29	23

'SLC5A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5480. Gene #575: 'SLC5A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLC5A3 MUTATED	1	1	1	1
SLC5A3 WILD-TYPE	34	29	33	25

'SLC5A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S5481. Gene #575: 'SLC5A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLC5A3 MUTATED	1	0	1	1	0
SLC5A3 WILD-TYPE	28	18	12	8	13

'SLC5A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S5482. Gene #575: 'SLC5A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLC5A3 MUTATED	2	0	1	0	0
SLC5A3 WILD-TYPE	30	18	11	10	10

'SLC5A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S5483. Gene #575: 'SLC5A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLC5A3 MUTATED	0	1	1	1	0
SLC5A3 WILD-TYPE	26	19	27	24	20

'SLC5A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S5484. Gene #575: 'SLC5A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLC5A3 MUTATED	1	1	1
SLC5A3 WILD-TYPE	47	52	17

'SLC5A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S5485. Gene #575: 'SLC5A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLC5A3 MUTATED	0	1	0	1	1
SLC5A3 WILD-TYPE	37	30	17	20	12

'SLC5A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S5486. Gene #575: 'SLC5A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLC5A3 MUTATED	2	0	1
SLC5A3 WILD-TYPE	69	27	20

'SLC5A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S5487. Gene #575: 'SLC5A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLC5A3 MUTATED	0	1	1	0	0	1	0
SLC5A3 WILD-TYPE	18	7	9	8	36	24	12

'SLC5A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S5488. Gene #575: 'SLC5A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLC5A3 MUTATED	0	1	0	1	1	0
SLC5A3 WILD-TYPE	17	31	13	31	15	7

'TGOLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S5489. Gene #576: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TGOLN2 MUTATED	0	1	0	2
TGOLN2 WILD-TYPE	19	52	30	22

'TGOLN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S5490. Gene #576: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TGOLN2 MUTATED	0	0	2	1
TGOLN2 WILD-TYPE	35	30	32	25

'TGOLN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S5491. Gene #576: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TGOLN2 MUTATED	2	0	0	0	1
TGOLN2 WILD-TYPE	27	18	13	9	12

'TGOLN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S5492. Gene #576: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TGOLN2 MUTATED	2	0	0	0	1
TGOLN2 WILD-TYPE	30	18	12	10	9

'TGOLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S5493. Gene #576: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TGOLN2 MUTATED	0	2	1	0	0
TGOLN2 WILD-TYPE	26	18	27	25	20

'TGOLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S5494. Gene #576: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TGOLN2 MUTATED	0	2	1
TGOLN2 WILD-TYPE	48	51	17

'TGOLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S5495. Gene #576: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TGOLN2 MUTATED	2	0	0	0	1
TGOLN2 WILD-TYPE	35	31	17	21	12

'TGOLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S5496. Gene #576: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TGOLN2 MUTATED	2	0	1
TGOLN2 WILD-TYPE	69	27	20

'TGOLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S5497. Gene #576: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TGOLN2 MUTATED	0	0	0	0	1	2	0
TGOLN2 WILD-TYPE	18	8	10	8	35	23	12

'TGOLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S5498. Gene #576: 'TGOLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TGOLN2 MUTATED	0	2	0	0	1	0
TGOLN2 WILD-TYPE	17	30	13	32	15	7

'HIST1H1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 1

Table S5499. Gene #577: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HIST1H1E MUTATED	0	0	3	0
HIST1H1E WILD-TYPE	19	53	27	24

Figure S237. Get High-res Image Gene #577: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIST1H1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S5500. Gene #577: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HIST1H1E MUTATED	2	1	0	0
HIST1H1E WILD-TYPE	33	29	34	26

'HIST1H1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S5501. Gene #577: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HIST1H1E MUTATED	1	1	0	1	0
HIST1H1E WILD-TYPE	25	19	28	24	20

'HIST1H1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S5502. Gene #577: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HIST1H1E MUTATED	1	1	1
HIST1H1E WILD-TYPE	47	52	17

'HIST1H1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 1

Table S5503. Gene #577: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HIST1H1E MUTATED	0	0	0	2	1
HIST1H1E WILD-TYPE	37	31	17	19	12

Figure S238. Get High-res Image Gene #577: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HIST1H1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5504. Gene #577: 'HIST1H1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HIST1H1E MUTATED	2	1	0
HIST1H1E WILD-TYPE	69	26	21

'APOA1BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S5505. Gene #578: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
APOA1BP MUTATED	1	0	2	1
APOA1BP WILD-TYPE	18	53	28	23

'APOA1BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S5506. Gene #578: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
APOA1BP MUTATED	2	2	0	0
APOA1BP WILD-TYPE	33	28	34	26

'APOA1BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 1

Table S5507. Gene #578: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
APOA1BP MUTATED	1	0	0	2	0
APOA1BP WILD-TYPE	28	18	13	7	13

'APOA1BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S5508. Gene #578: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
APOA1BP MUTATED	3	0	0	0	0
APOA1BP WILD-TYPE	29	18	12	10	10

'APOA1BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S5509. Gene #578: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
APOA1BP MUTATED	1	1	0	2	0
APOA1BP WILD-TYPE	25	19	28	23	20

'APOA1BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S5510. Gene #578: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
APOA1BP MUTATED	3	1	0
APOA1BP WILD-TYPE	45	52	18

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 1

Table S5511. Gene #578: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
APOA1BP MUTATED	0	0	1	2	1
APOA1BP WILD-TYPE	37	31	16	19	12

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S5512. Gene #578: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
APOA1BP MUTATED	2	2	0
APOA1BP WILD-TYPE	69	25	21

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S5513. Gene #578: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
APOA1BP MUTATED	1	0	1	0	0	0	1
APOA1BP WILD-TYPE	17	8	9	8	36	25	11

'APOA1BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S5514. Gene #578: 'APOA1BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
APOA1BP MUTATED	0	0	0	3	0	0
APOA1BP WILD-TYPE	17	32	13	29	16	7

'AKNAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S5515. Gene #579: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AKNAD1 MUTATED	0	0	1	2
AKNAD1 WILD-TYPE	19	53	29	22

'AKNAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S5516. Gene #579: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AKNAD1 MUTATED	1	0	1	1
AKNAD1 WILD-TYPE	34	30	33	25

'AKNAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S5517. Gene #579: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AKNAD1 MUTATED	0	0	1	1	1
AKNAD1 WILD-TYPE	26	20	27	24	19

'AKNAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5518. Gene #579: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AKNAD1 MUTATED	1	2	0
AKNAD1 WILD-TYPE	47	51	18

'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5519. Gene #579: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AKNAD1 MUTATED	1	1	0	1	0
AKNAD1 WILD-TYPE	36	30	17	20	13

'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S5520. Gene #579: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AKNAD1 MUTATED	3	0	0
AKNAD1 WILD-TYPE	68	27	21

'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5521. Gene #579: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AKNAD1 MUTATED	0	0	1	0	1	1	0
AKNAD1 WILD-TYPE	18	8	9	8	35	24	12

'AKNAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S5522. Gene #579: 'AKNAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AKNAD1 MUTATED	0	1	1	1	0	0
AKNAD1 WILD-TYPE	17	31	12	31	16	7

'MMP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S5523. Gene #580: 'MMP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MMP9 MUTATED	0	1	1	1
MMP9 WILD-TYPE	19	52	29	23

'MMP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S5524. Gene #580: 'MMP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MMP9 MUTATED	2	1	0	0
MMP9 WILD-TYPE	33	29	34	26

'MMP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S5525. Gene #580: 'MMP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MMP9 MUTATED	0	1	0	2	0
MMP9 WILD-TYPE	26	19	28	23	20

'MMP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S5526. Gene #580: 'MMP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MMP9 MUTATED	3	0	0
MMP9 WILD-TYPE	45	53	18

'MMP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S5527. Gene #580: 'MMP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MMP9 MUTATED	0	0	1	1	1
MMP9 WILD-TYPE	37	31	16	20	12

'MMP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S5528. Gene #580: 'MMP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MMP9 MUTATED	1	1	1
MMP9 WILD-TYPE	70	26	20

'MMP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5529. Gene #580: 'MMP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MMP9 MUTATED	0	0	1	0	1	1	0
MMP9 WILD-TYPE	18	8	9	8	35	24	12

'MMP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S5530. Gene #580: 'MMP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MMP9 MUTATED	0	0	0	2	1	0
MMP9 WILD-TYPE	17	32	13	30	15	7

'SCAND3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S5531. Gene #581: 'SCAND3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SCAND3 MUTATED	0	2	2	1
SCAND3 WILD-TYPE	19	51	28	23

'SCAND3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S5532. Gene #581: 'SCAND3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SCAND3 MUTATED	1	1	2	1
SCAND3 WILD-TYPE	34	29	32	25

'SCAND3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S5533. Gene #581: 'SCAND3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SCAND3 MUTATED	0	1	1	1	1
SCAND3 WILD-TYPE	29	17	12	8	12

'SCAND3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S5534. Gene #581: 'SCAND3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SCAND3 MUTATED	1	1	1	0	1
SCAND3 WILD-TYPE	31	17	11	10	9

'SCAND3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5535. Gene #581: 'SCAND3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SCAND3 MUTATED	1	1	1	1	1
SCAND3 WILD-TYPE	25	19	27	24	19

'SCAND3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S5536. Gene #581: 'SCAND3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SCAND3 MUTATED	3	1	1
SCAND3 WILD-TYPE	45	52	17

'SCAND3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S5537. Gene #581: 'SCAND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SCAND3 MUTATED	2	1	0	1	1
SCAND3 WILD-TYPE	35	30	17	20	12

'SCAND3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S5538. Gene #581: 'SCAND3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SCAND3 MUTATED	4	0	1
SCAND3 WILD-TYPE	67	27	20

'SCAND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S5539. Gene #581: 'SCAND3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SCAND3 MUTATED	0	0	1	0	1	3	0
SCAND3 WILD-TYPE	18	8	9	8	35	22	12

'SCAND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S5540. Gene #581: 'SCAND3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SCAND3 MUTATED	0	2	1	1	1	0
SCAND3 WILD-TYPE	17	30	12	31	15	7

'RNGTT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S5541. Gene #582: 'RNGTT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RNGTT MUTATED	0	1	0	2
RNGTT WILD-TYPE	19	52	30	22

'RNGTT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S5542. Gene #582: 'RNGTT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RNGTT MUTATED	0	1	1	1
RNGTT WILD-TYPE	35	29	33	25

'C1QTNF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 1

Table S5543. Gene #583: 'C1QTNF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C1QTNF7 MUTATED	0	0	3	1
C1QTNF7 WILD-TYPE	19	53	27	23

'C1QTNF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S5544. Gene #583: 'C1QTNF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C1QTNF7 MUTATED	1	2	0	1
C1QTNF7 WILD-TYPE	34	28	34	25

'C1QTNF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S5545. Gene #583: 'C1QTNF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
C1QTNF7 MUTATED	0	1	0	1	1
C1QTNF7 WILD-TYPE	29	17	13	8	12

'C1QTNF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S5546. Gene #583: 'C1QTNF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
C1QTNF7 MUTATED	1	1	0	0	1
C1QTNF7 WILD-TYPE	31	17	12	10	9

'C1QTNF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 1

Table S5547. Gene #583: 'C1QTNF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C1QTNF7 MUTATED	0	0	0	3	1
C1QTNF7 WILD-TYPE	26	20	28	22	19

'C1QTNF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0569 (Fisher's exact test), Q value = 1

Table S5548. Gene #583: 'C1QTNF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C1QTNF7 MUTATED	4	0	0
C1QTNF7 WILD-TYPE	44	53	18

'C1QTNF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S5549. Gene #583: 'C1QTNF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C1QTNF7 MUTATED	0	1	2	1	0
C1QTNF7 WILD-TYPE	37	30	15	20	13

'C1QTNF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S5550. Gene #583: 'C1QTNF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C1QTNF7 MUTATED	2	2	0
C1QTNF7 WILD-TYPE	69	25	21

'C1QTNF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S5551. Gene #583: 'C1QTNF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C1QTNF7 MUTATED	1	0	1	0	1	1	0
C1QTNF7 WILD-TYPE	17	8	9	8	35	24	12

'C1QTNF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S5552. Gene #583: 'C1QTNF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C1QTNF7 MUTATED	0	0	0	3	1	0
C1QTNF7 WILD-TYPE	17	32	13	29	15	7

'CHMP2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 1

Table S5553. Gene #584: 'CHMP2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CHMP2A MUTATED	0	0	2	2
CHMP2A WILD-TYPE	19	53	28	22

'CHMP2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5554. Gene #584: 'CHMP2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CHMP2A MUTATED	1	1	1	1
CHMP2A WILD-TYPE	34	29	33	25

'CHMP2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S5555. Gene #584: 'CHMP2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CHMP2A MUTATED	0	0	1	3	0
CHMP2A WILD-TYPE	26	20	27	22	20

'CHMP2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0567 (Fisher's exact test), Q value = 1

Table S5556. Gene #584: 'CHMP2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CHMP2A MUTATED	4	0	0
CHMP2A WILD-TYPE	44	53	18

'CHMP2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S5557. Gene #584: 'CHMP2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CHMP2A MUTATED	0	1	2	1	0
CHMP2A WILD-TYPE	37	30	15	20	13

'CHMP2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0626 (Fisher's exact test), Q value = 1

Table S5558. Gene #584: 'CHMP2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CHMP2A MUTATED	1	3	0
CHMP2A WILD-TYPE	70	24	21

'CHMP2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S5559. Gene #584: 'CHMP2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CHMP2A MUTATED	1	0	2	0	1	0	0
CHMP2A WILD-TYPE	17	8	8	8	35	25	12

'CHMP2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S5560. Gene #584: 'CHMP2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CHMP2A MUTATED	0	0	0	4	0	0
CHMP2A WILD-TYPE	17	32	13	28	16	7

'ATP6V0A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S5561. Gene #585: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ATP6V0A4 MUTATED	2	1	2	1
ATP6V0A4 WILD-TYPE	17	52	28	23

'ATP6V0A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S5562. Gene #585: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ATP6V0A4 MUTATED	2	2	1	1
ATP6V0A4 WILD-TYPE	33	28	33	25

'ATP6V0A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S5563. Gene #585: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ATP6V0A4 MUTATED	0	1	2	1	0
ATP6V0A4 WILD-TYPE	29	17	11	8	13

'ATP6V0A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5564. Gene #585: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ATP6V0A4 MUTATED	2	1	1	0	0
ATP6V0A4 WILD-TYPE	30	17	11	10	10

'ATP6V0A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 1

Table S5565. Gene #585: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ATP6V0A4 MUTATED	0	0	3	3	0
ATP6V0A4 WILD-TYPE	26	20	25	22	20

'ATP6V0A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S5566. Gene #585: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ATP6V0A4 MUTATED	4	2	0
ATP6V0A4 WILD-TYPE	44	51	18

'ATP6V0A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S5567. Gene #585: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ATP6V0A4 MUTATED	1	1	1	3	0
ATP6V0A4 WILD-TYPE	36	30	16	18	13

'ATP6V0A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S5568. Gene #585: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ATP6V0A4 MUTATED	4	2	0
ATP6V0A4 WILD-TYPE	67	25	21

'ATP6V0A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0885 (Fisher's exact test), Q value = 1

Table S5569. Gene #585: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ATP6V0A4 MUTATED	1	2	1	0	1	0	0
ATP6V0A4 WILD-TYPE	17	6	9	8	35	25	12

'ATP6V0A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S5570. Gene #585: 'ATP6V0A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ATP6V0A4 MUTATED	2	1	0	2	0	0
ATP6V0A4 WILD-TYPE	15	31	13	30	16	7

'FANCD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 1

Table S5571. Gene #586: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FANCD2 MUTATED	1	1	1	4
FANCD2 WILD-TYPE	18	52	29	20

'FANCD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S5572. Gene #586: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FANCD2 MUTATED	1	0	3	3
FANCD2 WILD-TYPE	34	30	31	23

'FANCD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S5573. Gene #586: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FANCD2 MUTATED	1	0	1	1	0
FANCD2 WILD-TYPE	28	18	12	8	13

'FANCD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S5574. Gene #586: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FANCD2 MUTATED	2	0	1	0	0
FANCD2 WILD-TYPE	30	18	11	10	10

'FANCD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S5575. Gene #586: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FANCD2 MUTATED	1	2	1	1	2
FANCD2 WILD-TYPE	25	18	27	24	18

'FANCD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S5576. Gene #586: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FANCD2 MUTATED	2	3	2
FANCD2 WILD-TYPE	46	50	16

'FANCD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S5577. Gene #586: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FANCD2 MUTATED	2	2	0	1	2
FANCD2 WILD-TYPE	35	29	17	20	11

'FANCD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S5578. Gene #586: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FANCD2 MUTATED	5	0	2
FANCD2 WILD-TYPE	66	27	19

'FANCD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S5579. Gene #586: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FANCD2 MUTATED	0	0	1	1	1	3	1
FANCD2 WILD-TYPE	18	8	9	7	35	22	11

'FANCD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.956 (Fisher's exact test), Q value = 1

Table S5580. Gene #586: 'FANCD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FANCD2 MUTATED	1	3	1	1	1	0
FANCD2 WILD-TYPE	16	29	12	31	15	7

'ZCCHC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S5581. Gene #587: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZCCHC11 MUTATED	1	3	3	1
ZCCHC11 WILD-TYPE	18	50	27	23

'ZCCHC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5582. Gene #587: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZCCHC11 MUTATED	2	2	2	2
ZCCHC11 WILD-TYPE	33	28	32	24

'ZCCHC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 1

Table S5583. Gene #587: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ZCCHC11 MUTATED	2	0	1	1	2
ZCCHC11 WILD-TYPE	27	18	12	8	11

'ZCCHC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S5584. Gene #587: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ZCCHC11 MUTATED	4	0	1	0	1
ZCCHC11 WILD-TYPE	28	18	11	10	9

'ZCCHC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S5585. Gene #587: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZCCHC11 MUTATED	1	0	2	3	2
ZCCHC11 WILD-TYPE	25	20	26	22	18

'ZCCHC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.885 (Fisher's exact test), Q value = 1

Table S5586. Gene #587: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZCCHC11 MUTATED	4	3	1
ZCCHC11 WILD-TYPE	44	50	17

'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S5587. Gene #587: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZCCHC11 MUTATED	1	4	1	2	0
ZCCHC11 WILD-TYPE	36	27	16	19	13

'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5588. Gene #587: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZCCHC11 MUTATED	5	2	1
ZCCHC11 WILD-TYPE	66	25	20

'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S5589. Gene #587: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZCCHC11 MUTATED	1	0	1	1	2	3	0
ZCCHC11 WILD-TYPE	17	8	9	7	34	22	12

'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S5590. Gene #587: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZCCHC11 MUTATED	0	3	1	3	1	0
ZCCHC11 WILD-TYPE	17	29	12	29	15	7

'GRM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S5591. Gene #588: 'GRM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GRM1 MUTATED	2	1	3	2
GRM1 WILD-TYPE	17	52	27	22

'GRM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S5592. Gene #588: 'GRM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GRM1 MUTATED	2	1	3	2
GRM1 WILD-TYPE	33	29	31	24

'GRM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S5593. Gene #588: 'GRM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GRM1 MUTATED	4	0	1	1	1
GRM1 WILD-TYPE	25	18	12	8	12

'GRM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S5594. Gene #588: 'GRM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GRM1 MUTATED	4	0	0	1	2
GRM1 WILD-TYPE	28	18	12	9	8

'GRM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S5595. Gene #588: 'GRM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GRM1 MUTATED	2	2	1	1	2
GRM1 WILD-TYPE	24	18	27	24	18

'GRM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S5596. Gene #588: 'GRM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GRM1 MUTATED	2	3	3
GRM1 WILD-TYPE	46	50	15

'GRM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S5597. Gene #588: 'GRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GRM1 MUTATED	1	2	1	2	2
GRM1 WILD-TYPE	36	29	16	19	11

'GRM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S5598. Gene #588: 'GRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GRM1 MUTATED	5	0	3
GRM1 WILD-TYPE	66	27	18

'GRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S5599. Gene #588: 'GRM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GRM1 MUTATED	0	0	1	1	3	3	0
GRM1 WILD-TYPE	18	8	9	7	33	22	12

'GRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S5600. Gene #588: 'GRM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GRM1 MUTATED	1	1	2	1	3	0
GRM1 WILD-TYPE	16	31	11	31	13	7

'TNFRSF11A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0779 (Fisher's exact test), Q value = 1

Table S5601. Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TNFRSF11A MUTATED	0	0	2	2
TNFRSF11A WILD-TYPE	19	53	28	22

'TNFRSF11A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S5602. Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TNFRSF11A MUTATED	2	1	0	1
TNFRSF11A WILD-TYPE	33	29	34	25

'TNFRSF11A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S5603. Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TNFRSF11A MUTATED	1	1	0	1	0
TNFRSF11A WILD-TYPE	28	17	13	8	13

'TNFRSF11A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5604. Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TNFRSF11A MUTATED	2	1	0	0	0
TNFRSF11A WILD-TYPE	30	17	12	10	10

'TNFRSF11A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S5605. Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TNFRSF11A MUTATED	0	1	0	1	2
TNFRSF11A WILD-TYPE	26	19	28	24	18

'TNFRSF11A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S5606. Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TNFRSF11A MUTATED	1	2	1
TNFRSF11A WILD-TYPE	47	51	17

'TNFRSF11A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S5607. Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TNFRSF11A MUTATED	0	2	0	2	0
TNFRSF11A WILD-TYPE	37	29	17	19	13

'TNFRSF11A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S5608. Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TNFRSF11A MUTATED	3	0	1
TNFRSF11A WILD-TYPE	68	27	20

'TNFRSF11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S5609. Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TNFRSF11A MUTATED	0	0	1	1	0	1	1
TNFRSF11A WILD-TYPE	18	8	9	7	36	24	11

'TNFRSF11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 1

Table S5610. Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TNFRSF11A MUTATED	0	0	2	1	0	1
TNFRSF11A WILD-TYPE	17	32	11	31	16	6

Figure S239. Get High-res Image Gene #589: 'TNFRSF11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ANKRD30A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S5611. Gene #590: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ANKRD30A MUTATED	2	2	2	1
ANKRD30A WILD-TYPE	17	51	28	23

'ANKRD30A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S5612. Gene #590: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ANKRD30A MUTATED	3	1	3	0
ANKRD30A WILD-TYPE	32	29	31	26

'ANKRD30A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S5613. Gene #590: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ANKRD30A MUTATED	1	1	1	1	0
ANKRD30A WILD-TYPE	28	17	12	8	13

'ANKRD30A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S5614. Gene #590: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ANKRD30A MUTATED	2	1	0	0	1
ANKRD30A WILD-TYPE	30	17	12	10	9

'ANKRD30A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S5615. Gene #590: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ANKRD30A MUTATED	1	1	2	2	1
ANKRD30A WILD-TYPE	25	19	26	23	19

'ANKRD30A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5616. Gene #590: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ANKRD30A MUTATED	3	3	1
ANKRD30A WILD-TYPE	45	50	17

'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S5617. Gene #590: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ANKRD30A MUTATED	1	2	1	2	1
ANKRD30A WILD-TYPE	36	29	16	19	12

'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5618. Gene #590: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ANKRD30A MUTATED	5	1	1
ANKRD30A WILD-TYPE	66	26	20

'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S5619. Gene #590: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ANKRD30A MUTATED	1	0	1	1	2	2	0
ANKRD30A WILD-TYPE	17	8	9	7	34	23	12

'ANKRD30A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5620. Gene #590: 'ANKRD30A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ANKRD30A MUTATED	1	2	1	2	1	0
ANKRD30A WILD-TYPE	16	30	12	30	15	7

'SNX32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S5621. Gene #591: 'SNX32 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SNX32 MUTATED	0	1	2	1
SNX32 WILD-TYPE	19	52	28	23

'SNX32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S5622. Gene #591: 'SNX32 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SNX32 MUTATED	1	2	0	1
SNX32 WILD-TYPE	34	28	34	25

'SNX32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S5623. Gene #591: 'SNX32 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SNX32 MUTATED	0	1	0	2	1
SNX32 WILD-TYPE	26	19	28	23	19

'SNX32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S5624. Gene #591: 'SNX32 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SNX32 MUTATED	2	1	1
SNX32 WILD-TYPE	46	52	17

'SNX32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S5625. Gene #591: 'SNX32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SNX32 MUTATED	0	1	1	2	0
SNX32 WILD-TYPE	37	30	16	19	13

'SNX32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S5626. Gene #591: 'SNX32 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SNX32 MUTATED	2	1	1
SNX32 WILD-TYPE	69	26	20

'SNX32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S5627. Gene #591: 'SNX32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SNX32 MUTATED	0	0	1	1	1	0	1
SNX32 WILD-TYPE	18	8	9	7	35	25	11

'SNX32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S5628. Gene #591: 'SNX32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SNX32 MUTATED	0	0	1	2	0	1
SNX32 WILD-TYPE	17	32	12	30	16	6

'BRF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5629. Gene #592: 'BRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BRF1 MUTATED	0	2	1	1
BRF1 WILD-TYPE	19	51	29	23

'BRF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S5630. Gene #592: 'BRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BRF1 MUTATED	1	0	2	1
BRF1 WILD-TYPE	34	30	32	25

'BRF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S5631. Gene #592: 'BRF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BRF1 MUTATED	1	1	0	1	1
BRF1 WILD-TYPE	28	17	13	8	12

'BRF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S5632. Gene #592: 'BRF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BRF1 MUTATED	2	0	0	0	2
BRF1 WILD-TYPE	30	18	12	10	8

'BRF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S5633. Gene #592: 'BRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BRF1 MUTATED	1	0	0	1	1
BRF1 WILD-TYPE	25	20	28	24	19

'BRF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S5634. Gene #592: 'BRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BRF1 MUTATED	3	0	0
BRF1 WILD-TYPE	45	53	18

'BRF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5635. Gene #592: 'BRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BRF1 MUTATED	1	1	0	1	0
BRF1 WILD-TYPE	36	30	17	20	13

'BRF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S5636. Gene #592: 'BRF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BRF1 MUTATED	2	0	1
BRF1 WILD-TYPE	69	27	20

'BRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S5637. Gene #592: 'BRF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BRF1 MUTATED	0	0	2	0	1	0	0
BRF1 WILD-TYPE	18	8	8	8	35	25	12

'BRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S5638. Gene #592: 'BRF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BRF1 MUTATED	1	0	0	1	1	0
BRF1 WILD-TYPE	16	32	13	31	15	7

'TPTE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S5639. Gene #593: 'TPTE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TPTE MUTATED	2	1	2	4
TPTE WILD-TYPE	17	52	28	20

'TPTE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S5640. Gene #593: 'TPTE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TPTE MUTATED	5	1	3	0
TPTE WILD-TYPE	30	29	31	26

'TPTE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S5641. Gene #593: 'TPTE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TPTE MUTATED	3	1	1	1	0
TPTE WILD-TYPE	26	17	12	8	13

'TPTE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S5642. Gene #593: 'TPTE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TPTE MUTATED	4	1	0	1	0
TPTE WILD-TYPE	28	17	12	9	10

'TPTE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S5643. Gene #593: 'TPTE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TPTE MUTATED	4	0	2	2	1
TPTE WILD-TYPE	22	20	26	23	19

'TPTE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S5644. Gene #593: 'TPTE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TPTE MUTATED	3	6	0
TPTE WILD-TYPE	45	47	18

'TPTE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S5645. Gene #593: 'TPTE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TPTE MUTATED	3	1	2	3	0
TPTE WILD-TYPE	34	30	15	18	13

'TPTE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S5646. Gene #593: 'TPTE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TPTE MUTATED	8	1	0
TPTE WILD-TYPE	63	26	21

'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S5647. Gene #593: 'TPTE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TPTE MUTATED	1	1	1	1	4	0	0
TPTE WILD-TYPE	17	7	9	7	32	25	12

'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S5648. Gene #593: 'TPTE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TPTE MUTATED	1	3	2	2	0	0
TPTE WILD-TYPE	16	29	11	30	16	7

'EXOSC10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S5649. Gene #594: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EXOSC10 MUTATED	1	1	1	0
EXOSC10 WILD-TYPE	18	52	29	24

'EXOSC10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S5650. Gene #594: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EXOSC10 MUTATED	2	0	1	0
EXOSC10 WILD-TYPE	33	30	33	26

'EXOSC10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S5651. Gene #594: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EXOSC10 MUTATED	0	0	1	1	1
EXOSC10 WILD-TYPE	26	20	27	24	19

'EXOSC10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S5652. Gene #594: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EXOSC10 MUTATED	2	1	0
EXOSC10 WILD-TYPE	46	52	18

'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5653. Gene #594: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EXOSC10 MUTATED	1	1	0	1	0
EXOSC10 WILD-TYPE	36	30	17	20	13

'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S5654. Gene #594: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EXOSC10 MUTATED	3	0	0
EXOSC10 WILD-TYPE	68	27	21

'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S5655. Gene #594: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EXOSC10 MUTATED	0	0	1	1	1	0	0
EXOSC10 WILD-TYPE	18	8	9	7	35	25	12

'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S5656. Gene #594: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EXOSC10 MUTATED	0	0	1	2	0	0
EXOSC10 WILD-TYPE	17	32	12	30	16	7

'DUSP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S5657. Gene #595: 'DUSP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DUSP13 MUTATED	0	1	2	0
DUSP13 WILD-TYPE	19	52	28	24

'DUSP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S5658. Gene #595: 'DUSP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DUSP13 MUTATED	2	0	0	1
DUSP13 WILD-TYPE	33	30	34	25

'DUSP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S5659. Gene #595: 'DUSP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DUSP13 MUTATED	0	0	1	1	1
DUSP13 WILD-TYPE	26	20	27	24	19

'DUSP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 1

Table S5660. Gene #595: 'DUSP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DUSP13 MUTATED	1	1	1
DUSP13 WILD-TYPE	47	52	17

'DUSP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5661. Gene #595: 'DUSP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DUSP13 MUTATED	1	1	0	1	0
DUSP13 WILD-TYPE	36	30	17	20	13

'DUSP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S5662. Gene #595: 'DUSP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DUSP13 MUTATED	2	0	1
DUSP13 WILD-TYPE	69	27	20

'DUSP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5663. Gene #595: 'DUSP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DUSP13 MUTATED	0	0	1	0	1	1	0
DUSP13 WILD-TYPE	18	8	9	8	35	24	12

'DUSP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S5664. Gene #595: 'DUSP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DUSP13 MUTATED	0	1	0	1	1	0
DUSP13 WILD-TYPE	17	31	13	31	15	7

'C1ORF110 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5665. Gene #596: 'C1ORF110 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C1ORF110 MUTATED	0	3	1	0
C1ORF110 WILD-TYPE	19	50	29	24

'C1ORF110 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S5666. Gene #596: 'C1ORF110 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C1ORF110 MUTATED	3	1	0	0
C1ORF110 WILD-TYPE	32	29	34	26

'C1ORF110 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S5667. Gene #596: 'C1ORF110 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C1ORF110 MUTATED	1	0	1	2	0
C1ORF110 WILD-TYPE	25	20	27	23	20

'C1ORF110 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5668. Gene #596: 'C1ORF110 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C1ORF110 MUTATED	2	2	0
C1ORF110 WILD-TYPE	46	51	18

'C1ORF110 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S5669. Gene #596: 'C1ORF110 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C1ORF110 MUTATED	2	0	1	1	0
C1ORF110 WILD-TYPE	35	31	16	20	13

'C1ORF110 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5670. Gene #596: 'C1ORF110 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C1ORF110 MUTATED	3	1	0
C1ORF110 WILD-TYPE	68	26	21

'C1ORF110 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S5671. Gene #596: 'C1ORF110 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C1ORF110 MUTATED	1	0	1	0	2	0	0
C1ORF110 WILD-TYPE	17	8	9	8	34	25	12

'C1ORF110 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S5672. Gene #596: 'C1ORF110 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C1ORF110 MUTATED	1	1	0	2	0	0
C1ORF110 WILD-TYPE	16	31	13	30	16	7

'PCOLCE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5673. Gene #597: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PCOLCE2 MUTATED	0	2	1	0
PCOLCE2 WILD-TYPE	19	51	29	24

'PCOLCE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S5674. Gene #597: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PCOLCE2 MUTATED	1	0	2	0
PCOLCE2 WILD-TYPE	34	30	32	26

'PCOLCE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S5675. Gene #597: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PCOLCE2 MUTATED	0	0	2	1	0
PCOLCE2 WILD-TYPE	26	20	26	24	20

'PCOLCE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S5676. Gene #597: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PCOLCE2 MUTATED	2	1	0
PCOLCE2 WILD-TYPE	46	52	18

'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S5677. Gene #597: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PCOLCE2 MUTATED	2	0	0	1	0
PCOLCE2 WILD-TYPE	35	31	17	20	13

'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S5678. Gene #597: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PCOLCE2 MUTATED	3	0	0
PCOLCE2 WILD-TYPE	68	27	21

'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S5679. Gene #597: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PCOLCE2 MUTATED	0	1	1	0	1	0	0
PCOLCE2 WILD-TYPE	18	7	9	8	35	25	12

'PCOLCE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5680. Gene #597: 'PCOLCE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PCOLCE2 MUTATED	1	1	0	1	0	0
PCOLCE2 WILD-TYPE	16	31	13	31	16	7

'FLVCR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S5681. Gene #598: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FLVCR1 MUTATED	0	1	1	1
FLVCR1 WILD-TYPE	19	52	29	23

'FLVCR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S5682. Gene #598: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FLVCR1 MUTATED	1	0	1	1
FLVCR1 WILD-TYPE	34	30	33	25

'FLVCR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S5683. Gene #598: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FLVCR1 MUTATED	0	0	1	1	1
FLVCR1 WILD-TYPE	26	20	27	24	19

'FLVCR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S5684. Gene #598: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FLVCR1 MUTATED	2	1	0
FLVCR1 WILD-TYPE	46	52	18

'FLVCR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5685. Gene #598: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FLVCR1 MUTATED	1	1	0	1	0
FLVCR1 WILD-TYPE	36	30	17	20	13

'FLVCR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S5686. Gene #598: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FLVCR1 MUTATED	3	0	0
FLVCR1 WILD-TYPE	68	27	21

'FLVCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5687. Gene #598: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FLVCR1 MUTATED	0	0	1	0	1	1	0
FLVCR1 WILD-TYPE	18	8	9	8	35	24	12

'FLVCR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S5688. Gene #598: 'FLVCR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FLVCR1 MUTATED	0	0	1	2	0	0
FLVCR1 WILD-TYPE	17	32	12	30	16	7

'EXOSC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5689. Gene #599: 'EXOSC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EXOSC5 MUTATED	0	2	1	1
EXOSC5 WILD-TYPE	19	51	29	23

'EXOSC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S5690. Gene #599: 'EXOSC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EXOSC5 MUTATED	3	0	1	0
EXOSC5 WILD-TYPE	32	30	33	26

'EXOSC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S5691. Gene #599: 'EXOSC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EXOSC5 MUTATED	3	0	0	1	0
EXOSC5 WILD-TYPE	26	18	13	8	13

'EXOSC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S5692. Gene #599: 'EXOSC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EXOSC5 MUTATED	4	0	0	0	0
EXOSC5 WILD-TYPE	28	18	12	10	10

'EXOSC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S5693. Gene #599: 'EXOSC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EXOSC5 MUTATED	2	1	0	1	0
EXOSC5 WILD-TYPE	24	19	28	24	20

'EXOSC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S5694. Gene #599: 'EXOSC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EXOSC5 MUTATED	3	1	0
EXOSC5 WILD-TYPE	45	52	18

'EXOSC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S5695. Gene #599: 'EXOSC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EXOSC5 MUTATED	2	0	0	1	1
EXOSC5 WILD-TYPE	35	31	17	20	12

'EXOSC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S5696. Gene #599: 'EXOSC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EXOSC5 MUTATED	3	0	1
EXOSC5 WILD-TYPE	68	27	20

'EXOSC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S5697. Gene #599: 'EXOSC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EXOSC5 MUTATED	0	0	1	0	2	1	0
EXOSC5 WILD-TYPE	18	8	9	8	34	24	12

'EXOSC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5698. Gene #599: 'EXOSC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EXOSC5 MUTATED	1	1	0	1	1	0
EXOSC5 WILD-TYPE	16	31	13	31	15	7

'PDXDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5699. Gene #600: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PDXDC1 MUTATED	0	2	1	0
PDXDC1 WILD-TYPE	19	51	29	24

'PDXDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S5700. Gene #600: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PDXDC1 MUTATED	1	0	2	0
PDXDC1 WILD-TYPE	34	30	32	26

'PDXDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5701. Gene #600: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PDXDC1 MUTATED	1	0	1	1	0
PDXDC1 WILD-TYPE	25	20	27	24	20

'PDXDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S5702. Gene #600: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PDXDC1 MUTATED	3	0	0
PDXDC1 WILD-TYPE	45	53	18

'PDXDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S5703. Gene #600: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PDXDC1 MUTATED	2	0	0	1	0
PDXDC1 WILD-TYPE	35	31	17	20	13

'PDXDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5704. Gene #600: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PDXDC1 MUTATED	2	1	0
PDXDC1 WILD-TYPE	69	26	21

'PDXDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S5705. Gene #600: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PDXDC1 MUTATED	1	0	1	0	1	0	0
PDXDC1 WILD-TYPE	17	8	9	8	35	25	12

'PDXDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S5706. Gene #600: 'PDXDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PDXDC1 MUTATED	0	1	0	2	0	0
PDXDC1 WILD-TYPE	17	31	13	30	16	7

'C11ORF63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S5707. Gene #601: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C11ORF63 MUTATED	2	1	0	0
C11ORF63 WILD-TYPE	17	52	30	24

'C11ORF63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5708. Gene #601: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C11ORF63 MUTATED	1	1	1	0
C11ORF63 WILD-TYPE	34	29	33	26

'C11ORF63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S5709. Gene #601: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
C11ORF63 MUTATED	2	0	0	1	0
C11ORF63 WILD-TYPE	27	18	13	8	13

'C11ORF63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S5710. Gene #601: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
C11ORF63 MUTATED	2	0	0	1	0
C11ORF63 WILD-TYPE	30	18	12	9	10

'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S5711. Gene #601: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C11ORF63 MUTATED	0	0	1	2	0
C11ORF63 WILD-TYPE	26	20	27	23	20

'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S5712. Gene #601: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C11ORF63 MUTATED	2	1	0
C11ORF63 WILD-TYPE	46	52	18

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S5713. Gene #601: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C11ORF63 MUTATED	1	0	2	0	0
C11ORF63 WILD-TYPE	36	31	15	21	13

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5714. Gene #601: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C11ORF63 MUTATED	2	1	0
C11ORF63 WILD-TYPE	69	26	21

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S5715. Gene #601: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C11ORF63 MUTATED	0	0	0	0	2	0	1
C11ORF63 WILD-TYPE	18	8	10	8	34	25	11

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S5716. Gene #601: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C11ORF63 MUTATED	0	1	0	2	0	0
C11ORF63 WILD-TYPE	17	31	13	30	16	7

'FAM71F1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S5717. Gene #602: 'FAM71F1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FAM71F1 MUTATED	1	1	0	1
FAM71F1 WILD-TYPE	18	52	30	23

'FAM71F1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S5718. Gene #602: 'FAM71F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FAM71F1 MUTATED	2	0	0	1
FAM71F1 WILD-TYPE	33	30	34	25

'FAM71F1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S5719. Gene #602: 'FAM71F1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FAM71F1 MUTATED	1	0	0	0	2
FAM71F1 WILD-TYPE	25	20	28	25	18

'FAM71F1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S5720. Gene #602: 'FAM71F1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FAM71F1 MUTATED	0	2	1
FAM71F1 WILD-TYPE	48	51	17

'FAM71F1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 1

Table S5721. Gene #602: 'FAM71F1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FAM71F1 MUTATED	1	1	0	0	1
FAM71F1 WILD-TYPE	36	30	17	21	12

'FAM71F1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S5722. Gene #602: 'FAM71F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FAM71F1 MUTATED	2	0	1
FAM71F1 WILD-TYPE	69	27	20

'FAM71F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 1

Table S5723. Gene #602: 'FAM71F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FAM71F1 MUTATED	0	0	0	2	0	1	0
FAM71F1 WILD-TYPE	18	8	10	6	36	24	12

Figure S240. Get High-res Image Gene #602: 'FAM71F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FAM71F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S5724. Gene #602: 'FAM71F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FAM71F1 MUTATED	0	1	1	0	1	0
FAM71F1 WILD-TYPE	17	31	12	32	15	7

'UBE2Q1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S5725. Gene #603: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
UBE2Q1 MUTATED	0	3	0	0
UBE2Q1 WILD-TYPE	19	50	30	24

'UBE2Q1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S5726. Gene #603: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
UBE2Q1 MUTATED	0	2	1	0
UBE2Q1 WILD-TYPE	35	28	33	26

'UBE2Q1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 1

Table S5727. Gene #603: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
UBE2Q1 MUTATED	2	0	0	0	1
UBE2Q1 WILD-TYPE	27	18	13	9	12

'UBE2Q1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S5728. Gene #603: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
UBE2Q1 MUTATED	1	0	1	1	0
UBE2Q1 WILD-TYPE	31	18	11	9	10

'UBE2Q1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S5729. Gene #603: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
UBE2Q1 MUTATED	1	1	0	1	0
UBE2Q1 WILD-TYPE	25	19	28	24	20

'UBE2Q1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S5730. Gene #603: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
UBE2Q1 MUTATED	2	1	0
UBE2Q1 WILD-TYPE	46	52	18

'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S5731. Gene #603: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
UBE2Q1 MUTATED	2	0	0	1	0
UBE2Q1 WILD-TYPE	35	31	17	20	13

'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5732. Gene #603: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
UBE2Q1 MUTATED	2	1	0
UBE2Q1 WILD-TYPE	69	26	21

'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S5733. Gene #603: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
UBE2Q1 MUTATED	1	0	1	0	1	0	0
UBE2Q1 WILD-TYPE	17	8	9	8	35	25	12

'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5734. Gene #603: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
UBE2Q1 MUTATED	1	1	0	1	0	0
UBE2Q1 WILD-TYPE	16	31	13	31	16	7

'GALNT10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S5735. Gene #604: 'GALNT10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GALNT10 MUTATED	1	3	1	0
GALNT10 WILD-TYPE	18	50	29	24

'GALNT10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S5736. Gene #604: 'GALNT10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GALNT10 MUTATED	1	2	2	0
GALNT10 WILD-TYPE	34	28	32	26

'GALNT10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S5737. Gene #604: 'GALNT10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GALNT10 MUTATED	2	1	0	1	1
GALNT10 WILD-TYPE	27	17	13	8	12

'GALNT10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5738. Gene #604: 'GALNT10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GALNT10 MUTATED	2	1	1	1	0
GALNT10 WILD-TYPE	30	17	11	9	10

'GALNT10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 1

Table S5739. Gene #604: 'GALNT10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GALNT10 MUTATED	2	0	0	3	0
GALNT10 WILD-TYPE	24	20	28	22	20

'GALNT10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S5740. Gene #604: 'GALNT10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GALNT10 MUTATED	3	2	0
GALNT10 WILD-TYPE	45	51	18

'GALNT10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S5741. Gene #604: 'GALNT10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GALNT10 MUTATED	1	0	2	2	0
GALNT10 WILD-TYPE	36	31	15	19	13

'GALNT10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S5742. Gene #604: 'GALNT10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GALNT10 MUTATED	3	2	0
GALNT10 WILD-TYPE	68	25	21

'GALNT10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S5743. Gene #604: 'GALNT10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GALNT10 MUTATED	1	0	2	0	2	0	0
GALNT10 WILD-TYPE	17	8	8	8	34	25	12

'GALNT10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S5744. Gene #604: 'GALNT10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GALNT10 MUTATED	0	1	1	3	0	0
GALNT10 WILD-TYPE	17	31	12	29	16	7

'PPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S5745. Gene #605: 'PPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PPL MUTATED	0	1	3	0
PPL WILD-TYPE	19	52	27	24

'PPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S5746. Gene #605: 'PPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PPL MUTATED	2	0	0	2
PPL WILD-TYPE	33	30	34	24

'PPL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S5747. Gene #605: 'PPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PPL MUTATED	1	0	0	1	1
PPL WILD-TYPE	28	18	13	8	12

'PPL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S5748. Gene #605: 'PPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PPL MUTATED	3	0	0	0	0
PPL WILD-TYPE	29	18	12	10	10

'PPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S5749. Gene #605: 'PPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PPL MUTATED	1	0	0	1	2
PPL WILD-TYPE	25	20	28	24	18

'PPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S5750. Gene #605: 'PPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PPL MUTATED	1	2	1
PPL WILD-TYPE	47	51	17

'PPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S5751. Gene #605: 'PPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PPL MUTATED	1	2	0	1	0
PPL WILD-TYPE	36	29	17	20	13

'PPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S5752. Gene #605: 'PPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PPL MUTATED	3	0	1
PPL WILD-TYPE	68	27	20

'PPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S5753. Gene #605: 'PPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PPL MUTATED	0	0	1	0	1	1	1
PPL WILD-TYPE	18	8	9	8	35	24	11

'PPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5754. Gene #605: 'PPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PPL MUTATED	1	1	0	1	1	0
PPL WILD-TYPE	16	31	13	31	15	7

'CDC42BPG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 1

Table S5755. Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CDC42BPG MUTATED	1	0	2	2
CDC42BPG WILD-TYPE	18	53	28	22

'CDC42BPG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S5756. Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CDC42BPG MUTATED	2	3	0	0
CDC42BPG WILD-TYPE	33	27	34	26

'CDC42BPG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 1

Table S5757. Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CDC42BPG MUTATED	0	0	1	2	0
CDC42BPG WILD-TYPE	29	18	12	7	13

Figure S241. Get High-res Image Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDC42BPG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S5758. Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CDC42BPG MUTATED	1	0	1	1	0
CDC42BPG WILD-TYPE	31	18	11	9	10

'CDC42BPG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S5759. Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CDC42BPG MUTATED	1	1	0	2	0
CDC42BPG WILD-TYPE	25	19	28	23	20

'CDC42BPG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S5760. Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CDC42BPG MUTATED	2	1	1
CDC42BPG WILD-TYPE	46	52	17

'CDC42BPG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 1

Table S5761. Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CDC42BPG MUTATED	0	0	1	3	0
CDC42BPG WILD-TYPE	37	31	16	18	13

Figure S242. Get High-res Image Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDC42BPG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S5762. Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CDC42BPG MUTATED	2	1	1
CDC42BPG WILD-TYPE	69	26	20

'CDC42BPG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S5763. Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CDC42BPG MUTATED	0	0	1	0	1	0	1
CDC42BPG WILD-TYPE	18	8	9	8	35	25	11

'CDC42BPG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S5764. Gene #606: 'CDC42BPG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CDC42BPG MUTATED	0	0	0	2	0	1
CDC42BPG WILD-TYPE	17	32	13	30	16	6

'THBS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S5765. Gene #607: 'THBS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
THBS1 MUTATED	0	2	2	3
THBS1 WILD-TYPE	19	51	28	21

'THBS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S5766. Gene #607: 'THBS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
THBS1 MUTATED	3	2	0	2
THBS1 WILD-TYPE	32	28	34	24

'THBS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S5767. Gene #607: 'THBS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
THBS1 MUTATED	1	0	1	1	0
THBS1 WILD-TYPE	28	18	12	8	13

'THBS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S5768. Gene #607: 'THBS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
THBS1 MUTATED	3	0	0	0	0
THBS1 WILD-TYPE	29	18	12	10	10

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S5769. Gene #607: 'THBS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
THBS1 MUTATED	2	0	0	3	2
THBS1 WILD-TYPE	24	20	28	22	18

'THBS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5770. Gene #607: 'THBS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
THBS1 MUTATED	3	3	1
THBS1 WILD-TYPE	45	50	17

'THBS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S5771. Gene #607: 'THBS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
THBS1 MUTATED	0	2	2	2	1
THBS1 WILD-TYPE	37	29	15	19	12

'THBS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S5772. Gene #607: 'THBS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
THBS1 MUTATED	4	2	1
THBS1 WILD-TYPE	67	25	20

'THBS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S5773. Gene #607: 'THBS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
THBS1 MUTATED	1	1	1	1	1	1	0
THBS1 WILD-TYPE	17	7	9	7	35	24	12

'THBS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S5774. Gene #607: 'THBS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
THBS1 MUTATED	0	1	1	3	1	0
THBS1 WILD-TYPE	17	31	12	29	15	7

'LAMA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5775. Gene #608: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LAMA3 MUTATED	0	2	1	1
LAMA3 WILD-TYPE	19	51	29	23

'LAMA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S5776. Gene #608: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LAMA3 MUTATED	2	1	1	0
LAMA3 WILD-TYPE	33	29	33	26

'LAMA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S5777. Gene #608: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LAMA3 MUTATED	2	0	0	2	0
LAMA3 WILD-TYPE	24	20	28	23	20

'LAMA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5778. Gene #608: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LAMA3 MUTATED	2	2	0
LAMA3 WILD-TYPE	46	51	18

'LAMA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S5779. Gene #608: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LAMA3 MUTATED	1	0	1	2	0
LAMA3 WILD-TYPE	36	31	16	19	13

'LAMA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5780. Gene #608: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LAMA3 MUTATED	3	1	0
LAMA3 WILD-TYPE	68	26	21

'LAMA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S5781. Gene #608: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LAMA3 MUTATED	1	0	2	0	1	0	0
LAMA3 WILD-TYPE	17	8	8	8	35	25	12

'LAMA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.963 (Fisher's exact test), Q value = 1

Table S5782. Gene #608: 'LAMA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LAMA3 MUTATED	1	1	0	2	0	0
LAMA3 WILD-TYPE	16	31	13	30	16	7

'DYRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S5783. Gene #609: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
DYRK4 MUTATED	0	1	1	1
DYRK4 WILD-TYPE	19	52	29	23

'DYRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S5784. Gene #609: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
DYRK4 MUTATED	2	0	1	0
DYRK4 WILD-TYPE	33	30	33	26

'DYRK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S5785. Gene #609: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
DYRK4 MUTATED	2	0	0	1	0
DYRK4 WILD-TYPE	27	18	13	8	13

'DYRK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S5786. Gene #609: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
DYRK4 MUTATED	2	0	0	1	0
DYRK4 WILD-TYPE	30	18	12	9	10

'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S5787. Gene #609: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
DYRK4 MUTATED	2	0	0	1	0
DYRK4 WILD-TYPE	24	20	28	24	20

'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5788. Gene #609: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
DYRK4 MUTATED	1	2	0
DYRK4 WILD-TYPE	47	51	18

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S5789. Gene #609: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
DYRK4 MUTATED	1	0	0	2	0
DYRK4 WILD-TYPE	36	31	17	19	13

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S5790. Gene #609: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
DYRK4 MUTATED	3	0	0
DYRK4 WILD-TYPE	68	27	21

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S5791. Gene #609: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
DYRK4 MUTATED	0	0	1	0	2	0	0
DYRK4 WILD-TYPE	18	8	9	8	34	25	12

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S5792. Gene #609: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
DYRK4 MUTATED	0	1	1	1	0	0
DYRK4 WILD-TYPE	17	31	12	31	16	7

'HNRNPH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S5793. Gene #610: 'HNRNPH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HNRNPH1 MUTATED	1	1	1	1
HNRNPH1 WILD-TYPE	18	52	29	23

'HNRNPH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S5794. Gene #610: 'HNRNPH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HNRNPH1 MUTATED	3	0	1	0
HNRNPH1 WILD-TYPE	32	30	33	26

'HNRNPH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S5795. Gene #610: 'HNRNPH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
HNRNPH1 MUTATED	1	1	0	1	0
HNRNPH1 WILD-TYPE	28	17	13	8	13

'HNRNPH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S5796. Gene #610: 'HNRNPH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
HNRNPH1 MUTATED	1	1	0	1	0
HNRNPH1 WILD-TYPE	31	17	12	9	10

'HNRNPH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S5797. Gene #610: 'HNRNPH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HNRNPH1 MUTATED	2	0	1	1	0
HNRNPH1 WILD-TYPE	24	20	27	24	20

'HNRNPH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S5798. Gene #610: 'HNRNPH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HNRNPH1 MUTATED	1	3	0
HNRNPH1 WILD-TYPE	47	50	18

'HNRNPH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S5799. Gene #610: 'HNRNPH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HNRNPH1 MUTATED	2	0	0	2	0
HNRNPH1 WILD-TYPE	35	31	17	19	13

'HNRNPH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S5800. Gene #610: 'HNRNPH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HNRNPH1 MUTATED	4	0	0
HNRNPH1 WILD-TYPE	67	27	21

'HNRNPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S5801. Gene #610: 'HNRNPH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
HNRNPH1 MUTATED	0	0	1	0	3	0	0
HNRNPH1 WILD-TYPE	18	8	9	8	33	25	12

'HNRNPH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S5802. Gene #610: 'HNRNPH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
HNRNPH1 MUTATED	0	2	1	1	0	0
HNRNPH1 WILD-TYPE	17	30	12	31	16	7

'UGT1A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S5803. Gene #611: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
UGT1A10 MUTATED	1	2	0	1
UGT1A10 WILD-TYPE	18	51	30	23

'UGT1A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S5804. Gene #611: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
UGT1A10 MUTATED	0	1	3	0
UGT1A10 WILD-TYPE	35	29	31	26

'UGT1A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S5805. Gene #611: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
UGT1A10 MUTATED	2	0	0	0	1
UGT1A10 WILD-TYPE	27	18	13	9	12

'UGT1A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S5806. Gene #611: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
UGT1A10 MUTATED	2	0	1	0	0
UGT1A10 WILD-TYPE	30	18	11	10	10

'UGT1A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S5807. Gene #611: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
UGT1A10 MUTATED	2	1	0	1	0
UGT1A10 WILD-TYPE	24	19	28	24	20

'UGT1A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S5808. Gene #611: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
UGT1A10 MUTATED	1	3	0
UGT1A10 WILD-TYPE	47	50	18

'UGT1A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S5809. Gene #611: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
UGT1A10 MUTATED	3	0	1	0	0
UGT1A10 WILD-TYPE	34	31	16	21	13

'UGT1A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5810. Gene #611: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
UGT1A10 MUTATED	3	1	0
UGT1A10 WILD-TYPE	68	26	21

'UGT1A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S5811. Gene #611: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
UGT1A10 MUTATED	0	0	0	0	2	1	1
UGT1A10 WILD-TYPE	18	8	10	8	34	24	11

'UGT1A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S5812. Gene #611: 'UGT1A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
UGT1A10 MUTATED	1	2	0	1	0	0
UGT1A10 WILD-TYPE	16	30	13	31	16	7

'TEKT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S5813. Gene #612: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TEKT4 MUTATED	1	2	1	2
TEKT4 WILD-TYPE	18	51	29	22

'TEKT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S5814. Gene #612: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TEKT4 MUTATED	2	1	1	2
TEKT4 WILD-TYPE	33	29	33	24

'TEKT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S5815. Gene #612: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TEKT4 MUTATED	2	0	0	2	0
TEKT4 WILD-TYPE	27	18	13	7	13

'TEKT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S5816. Gene #612: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TEKT4 MUTATED	3	0	0	1	0
TEKT4 WILD-TYPE	29	18	12	9	10

'TEKT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S5817. Gene #612: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TEKT4 MUTATED	0	1	1	3	1
TEKT4 WILD-TYPE	26	19	27	22	19

'TEKT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S5818. Gene #612: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TEKT4 MUTATED	3	2	1
TEKT4 WILD-TYPE	45	51	17

'TEKT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S5819. Gene #612: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TEKT4 MUTATED	1	1	1	2	1
TEKT4 WILD-TYPE	36	30	16	19	12

'TEKT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S5820. Gene #612: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TEKT4 MUTATED	3	2	1
TEKT4 WILD-TYPE	68	25	20

'TEKT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S5821. Gene #612: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TEKT4 MUTATED	0	0	1	0	2	2	1
TEKT4 WILD-TYPE	18	8	9	8	34	23	11

'TEKT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S5822. Gene #612: 'TEKT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TEKT4 MUTATED	0	0	2	3	1	0
TEKT4 WILD-TYPE	17	32	11	29	15	7

'PHTF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S5823. Gene #613: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PHTF2 MUTATED	0	2	2	0
PHTF2 WILD-TYPE	19	51	28	24

'PHTF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5824. Gene #613: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PHTF2 MUTATED	1	1	1	1
PHTF2 WILD-TYPE	34	29	33	25

'PHTF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S5825. Gene #613: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PHTF2 MUTATED	0	2	1	1	0
PHTF2 WILD-TYPE	26	18	27	24	20

'PHTF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S5826. Gene #613: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PHTF2 MUTATED	1	2	1
PHTF2 WILD-TYPE	47	51	17

'PHTF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S5827. Gene #613: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PHTF2 MUTATED	1	0	0	2	1
PHTF2 WILD-TYPE	36	31	17	19	12

'PHTF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S5828. Gene #613: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PHTF2 MUTATED	3	0	1
PHTF2 WILD-TYPE	68	27	20

'PHTF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0079 (Fisher's exact test), Q value = 1

Table S5829. Gene #613: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PHTF2 MUTATED	0	2	1	0	0	0	1
PHTF2 WILD-TYPE	18	6	9	8	36	25	11

Figure S243. Get High-res Image Gene #613: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PHTF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 1

Table S5830. Gene #613: 'PHTF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PHTF2 MUTATED	2	0	0	1	0	1
PHTF2 WILD-TYPE	15	32	13	31	16	6

'CDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S5831. Gene #614: 'CDC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CDC6 MUTATED	1	0	1	1
CDC6 WILD-TYPE	18	53	29	23

'CDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S5832. Gene #614: 'CDC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CDC6 MUTATED	1	0	2	0
CDC6 WILD-TYPE	34	30	32	26

'CDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S5833. Gene #614: 'CDC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CDC6 MUTATED	1	1	0	1	0
CDC6 WILD-TYPE	28	17	13	8	13

'CDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5834. Gene #614: 'CDC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CDC6 MUTATED	2	1	0	0	0
CDC6 WILD-TYPE	30	17	12	10	10

'CDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S5835. Gene #614: 'CDC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CDC6 MUTATED	2	0	0	1	0
CDC6 WILD-TYPE	24	20	28	24	20

'CDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S5836. Gene #614: 'CDC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CDC6 MUTATED	2	1	0
CDC6 WILD-TYPE	46	52	18

'CDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S5837. Gene #614: 'CDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CDC6 MUTATED	1	0	1	1	0
CDC6 WILD-TYPE	36	31	16	20	13

'CDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S5838. Gene #614: 'CDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CDC6 MUTATED	3	0	0
CDC6 WILD-TYPE	68	27	21

'CDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S5839. Gene #614: 'CDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CDC6 MUTATED	0	0	1	0	2	0	0
CDC6 WILD-TYPE	18	8	9	8	34	25	12

'CDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5840. Gene #614: 'CDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CDC6 MUTATED	1	1	0	1	0	0
CDC6 WILD-TYPE	16	31	13	31	16	7

'PRKDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S5841. Gene #615: 'PRKDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PRKDC MUTATED	1	1	1	0
PRKDC WILD-TYPE	18	52	29	24

'PRKDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S5842. Gene #615: 'PRKDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PRKDC MUTATED	1	0	2	0
PRKDC WILD-TYPE	34	30	32	26

'PRKDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S5843. Gene #615: 'PRKDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PRKDC MUTATED	1	1	0	1	0
PRKDC WILD-TYPE	28	17	13	8	13

'PRKDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5844. Gene #615: 'PRKDC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PRKDC MUTATED	2	1	0	0	0
PRKDC WILD-TYPE	30	17	12	10	10

'PRKDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S5845. Gene #615: 'PRKDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PRKDC MUTATED	0	0	2	1	0
PRKDC WILD-TYPE	26	20	26	24	20

'PRKDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5846. Gene #615: 'PRKDC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PRKDC MUTATED	1	2	0
PRKDC WILD-TYPE	47	51	18

'PRKDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5847. Gene #615: 'PRKDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PRKDC MUTATED	1	1	0	1	0
PRKDC WILD-TYPE	36	30	17	20	13

'PRKDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S5848. Gene #615: 'PRKDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PRKDC MUTATED	3	0	0
PRKDC WILD-TYPE	68	27	21

'PRKDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S5849. Gene #615: 'PRKDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PRKDC MUTATED	0	0	1	0	1	1	0
PRKDC WILD-TYPE	18	8	9	8	35	24	12

'PRKDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S5850. Gene #615: 'PRKDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PRKDC MUTATED	0	2	0	1	0	0
PRKDC WILD-TYPE	17	30	13	31	16	7

'KDM6B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 1

Table S5851. Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
KDM6B MUTATED	0	1	5	0
KDM6B WILD-TYPE	19	52	25	24

Figure S244. Get High-res Image Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KDM6B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S5852. Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
KDM6B MUTATED	2	3	1	0
KDM6B WILD-TYPE	33	27	33	26

'KDM6B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 1

Table S5853. Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
KDM6B MUTATED	0	0	1	2	0
KDM6B WILD-TYPE	29	18	12	7	13

Figure S245. Get High-res Image Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KDM6B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S5854. Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
KDM6B MUTATED	1	0	0	1	1
KDM6B WILD-TYPE	31	18	12	9	9

'KDM6B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S5855. Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
KDM6B MUTATED	1	0	1	4	0
KDM6B WILD-TYPE	25	20	27	21	20

'KDM6B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S5856. Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
KDM6B MUTATED	4	2	0
KDM6B WILD-TYPE	44	51	18

'KDM6B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 1

Table S5857. Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
KDM6B MUTATED	1	0	2	3	0
KDM6B WILD-TYPE	36	31	15	18	13

'KDM6B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S5858. Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
KDM6B MUTATED	3	3	0
KDM6B WILD-TYPE	68	24	21

'KDM6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S5859. Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
KDM6B MUTATED	1	0	2	0	1	0	0
KDM6B WILD-TYPE	17	8	8	8	35	25	12

'KDM6B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S5860. Gene #616: 'KDM6B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
KDM6B MUTATED	0	1	0	3	0	0
KDM6B WILD-TYPE	17	31	13	29	16	7

'LRRCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S5861. Gene #617: 'LRRCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LRRCC1 MUTATED	2	1	2	0
LRRCC1 WILD-TYPE	17	52	28	24

'LRRCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S5862. Gene #617: 'LRRCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LRRCC1 MUTATED	2	0	2	1
LRRCC1 WILD-TYPE	33	30	32	25

'LRRCC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S5863. Gene #617: 'LRRCC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
LRRCC1 MUTATED	1	0	0	1	1
LRRCC1 WILD-TYPE	28	18	13	8	12

'LRRCC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5864. Gene #617: 'LRRCC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
LRRCC1 MUTATED	2	1	0	0	0
LRRCC1 WILD-TYPE	30	17	12	10	10

'LRRCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S5865. Gene #617: 'LRRCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LRRCC1 MUTATED	1	0	2	1	1
LRRCC1 WILD-TYPE	25	20	26	24	19

'LRRCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S5866. Gene #617: 'LRRCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LRRCC1 MUTATED	1	4	0
LRRCC1 WILD-TYPE	47	49	18

'LRRCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S5867. Gene #617: 'LRRCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LRRCC1 MUTATED	1	2	0	2	0
LRRCC1 WILD-TYPE	36	29	17	19	13

'LRRCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 1

Table S5868. Gene #617: 'LRRCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LRRCC1 MUTATED	5	0	0
LRRCC1 WILD-TYPE	66	27	21

'LRRCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S5869. Gene #617: 'LRRCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LRRCC1 MUTATED	0	1	1	1	2	0	0
LRRCC1 WILD-TYPE	18	7	9	7	34	25	12

'LRRCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S5870. Gene #617: 'LRRCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LRRCC1 MUTATED	0	3	1	1	0	0
LRRCC1 WILD-TYPE	17	29	12	31	16	7

'ZNF285 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S5871. Gene #618: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ZNF285 MUTATED	1	1	0	2
ZNF285 WILD-TYPE	18	52	30	22

'ZNF285 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 1

Table S5872. Gene #618: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ZNF285 MUTATED	0	3	1	0
ZNF285 WILD-TYPE	35	27	33	26

'ZNF285 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S5873. Gene #618: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ZNF285 MUTATED	0	0	1	3	0
ZNF285 WILD-TYPE	26	20	27	22	20

'ZNF285 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S5874. Gene #618: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ZNF285 MUTATED	3	1	0
ZNF285 WILD-TYPE	45	52	18

'ZNF285 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 1

Table S5875. Gene #618: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ZNF285 MUTATED	1	0	3	0	0
ZNF285 WILD-TYPE	36	31	14	21	13

Figure S246. Get High-res Image Gene #618: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF285 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0631 (Fisher's exact test), Q value = 1

Table S5876. Gene #618: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ZNF285 MUTATED	1	3	0
ZNF285 WILD-TYPE	70	24	21

'ZNF285 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S5877. Gene #618: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ZNF285 MUTATED	2	0	0	0	2	0	0
ZNF285 WILD-TYPE	16	8	10	8	34	25	12

'ZNF285 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S5878. Gene #618: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ZNF285 MUTATED	0	1	0	3	0	0
ZNF285 WILD-TYPE	17	31	13	29	16	7

'RPS6KA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S5879. Gene #619: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
RPS6KA5 MUTATED	0	1	1	2
RPS6KA5 WILD-TYPE	19	52	29	22

'RPS6KA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S5880. Gene #619: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
RPS6KA5 MUTATED	2	1	0	1
RPS6KA5 WILD-TYPE	33	29	34	25

'RPS6KA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S5881. Gene #619: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
RPS6KA5 MUTATED	1	0	0	2	1
RPS6KA5 WILD-TYPE	25	20	28	23	19

'RPS6KA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5882. Gene #619: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
RPS6KA5 MUTATED	2	2	0
RPS6KA5 WILD-TYPE	46	51	18

'RPS6KA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S5883. Gene #619: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
RPS6KA5 MUTATED	1	1	1	1	0
RPS6KA5 WILD-TYPE	36	30	16	20	13

'RPS6KA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5884. Gene #619: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
RPS6KA5 MUTATED	3	1	0
RPS6KA5 WILD-TYPE	68	26	21

'RPS6KA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S5885. Gene #619: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
RPS6KA5 MUTATED	0	0	1	0	2	1	0
RPS6KA5 WILD-TYPE	18	8	9	8	34	24	12

'RPS6KA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S5886. Gene #619: 'RPS6KA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
RPS6KA5 MUTATED	0	2	0	2	0	0
RPS6KA5 WILD-TYPE	17	30	13	30	16	7

'ASB11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 1

Table S5887. Gene #620: 'ASB11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ASB11 MUTATED	1	0	2	0
ASB11 WILD-TYPE	18	53	28	24

'ASB11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S5888. Gene #620: 'ASB11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ASB11 MUTATED	1	0	0	2
ASB11 WILD-TYPE	34	30	34	24

'ASB11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 1

Table S5889. Gene #620: 'ASB11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ASB11 MUTATED	0	0	0	1	2
ASB11 WILD-TYPE	26	20	28	24	18

'ASB11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S5890. Gene #620: 'ASB11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ASB11 MUTATED	2	1	0
ASB11 WILD-TYPE	46	52	18

'ASB11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S5891. Gene #620: 'ASB11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ASB11 MUTATED	0	2	0	1	0
ASB11 WILD-TYPE	37	29	17	20	13

'ASB11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5892. Gene #620: 'ASB11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ASB11 MUTATED	2	1	0
ASB11 WILD-TYPE	69	26	21

'ASB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S5893. Gene #620: 'ASB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ASB11 MUTATED	0	0	1	1	0	1	0
ASB11 WILD-TYPE	18	8	9	7	36	24	12

'ASB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S5894. Gene #620: 'ASB11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ASB11 MUTATED	0	0	1	1	1	0
ASB11 WILD-TYPE	17	32	12	31	15	7

'CCT8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S5895. Gene #621: 'CCT8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCT8 MUTATED	0	1	2	1
CCT8 WILD-TYPE	19	52	28	23

'CCT8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S5896. Gene #621: 'CCT8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCT8 MUTATED	1	2	1	0
CCT8 WILD-TYPE	34	28	33	26

'CCT8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S5897. Gene #621: 'CCT8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCT8 MUTATED	0	1	1	1	0
CCT8 WILD-TYPE	26	19	27	24	20

'CCT8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S5898. Gene #621: 'CCT8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCT8 MUTATED	1	1	1
CCT8 WILD-TYPE	47	52	17

'CCT8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S5899. Gene #621: 'CCT8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCT8 MUTATED	0	1	0	1	1
CCT8 WILD-TYPE	37	30	17	20	12

'CCT8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5900. Gene #621: 'CCT8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCT8 MUTATED	2	1	0
CCT8 WILD-TYPE	69	26	21

'CCT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S5901. Gene #621: 'CCT8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCT8 MUTATED	0	0	1	0	0	1	1
CCT8 WILD-TYPE	18	8	9	8	36	24	11

'CCT8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S5902. Gene #621: 'CCT8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCT8 MUTATED	0	1	0	1	0	1
CCT8 WILD-TYPE	17	31	13	31	16	6

'PSMB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S5903. Gene #622: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PSMB4 MUTATED	1	1	1	1
PSMB4 WILD-TYPE	18	52	29	23

'PSMB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S5904. Gene #622: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PSMB4 MUTATED	2	0	1	1
PSMB4 WILD-TYPE	33	30	33	25

'PSMB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S5905. Gene #622: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PSMB4 MUTATED	2	0	1	0	1
PSMB4 WILD-TYPE	27	18	12	9	12

'PSMB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S5906. Gene #622: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PSMB4 MUTATED	3	0	1	0	0
PSMB4 WILD-TYPE	29	18	11	10	10

'PSMB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S5907. Gene #622: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PSMB4 MUTATED	2	0	1	0	1
PSMB4 WILD-TYPE	24	20	27	25	19

'PSMB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S5908. Gene #622: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PSMB4 MUTATED	0	3	1
PSMB4 WILD-TYPE	48	50	17

'PSMB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 1

Table S5909. Gene #622: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PSMB4 MUTATED	2	2	0	0	0
PSMB4 WILD-TYPE	35	29	17	21	13

'PSMB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S5910. Gene #622: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PSMB4 MUTATED	4	0	0
PSMB4 WILD-TYPE	67	27	21

'PSMB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S5911. Gene #622: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PSMB4 MUTATED	0	1	0	0	2	0	1
PSMB4 WILD-TYPE	18	7	10	8	34	25	11

'PSMB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S5912. Gene #622: 'PSMB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PSMB4 MUTATED	2	2	0	0	0	0
PSMB4 WILD-TYPE	15	30	13	32	16	7

'SIGLEC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S5913. Gene #623: 'SIGLEC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SIGLEC7 MUTATED	1	0	1	1
SIGLEC7 WILD-TYPE	18	53	29	23

'SIGLEC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S5914. Gene #623: 'SIGLEC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SIGLEC7 MUTATED	1	0	2	0
SIGLEC7 WILD-TYPE	34	30	32	26

'SIGLEC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5915. Gene #623: 'SIGLEC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SIGLEC7 MUTATED	1	0	1	1	0
SIGLEC7 WILD-TYPE	25	20	27	24	20

'SIGLEC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5916. Gene #623: 'SIGLEC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SIGLEC7 MUTATED	1	2	0
SIGLEC7 WILD-TYPE	47	51	18

'SIGLEC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S5917. Gene #623: 'SIGLEC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SIGLEC7 MUTATED	2	0	0	1	0
SIGLEC7 WILD-TYPE	35	31	17	20	13

'SIGLEC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S5918. Gene #623: 'SIGLEC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SIGLEC7 MUTATED	3	0	0
SIGLEC7 WILD-TYPE	68	27	21

'SIGLEC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 1

Table S5919. Gene #623: 'SIGLEC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SIGLEC7 MUTATED	0	0	1	0	2	0	0
SIGLEC7 WILD-TYPE	18	8	9	8	34	25	12

'SIGLEC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S5920. Gene #623: 'SIGLEC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SIGLEC7 MUTATED	0	2	0	1	0	0
SIGLEC7 WILD-TYPE	17	30	13	31	16	7

'ATP2B3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 1

Table S5921. Gene #624: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ATP2B3 MUTATED	0	0	3	0
ATP2B3 WILD-TYPE	19	53	27	24

Figure S247. Get High-res Image Gene #624: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP2B3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S5922. Gene #624: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ATP2B3 MUTATED	1	0	0	2
ATP2B3 WILD-TYPE	34	30	34	24

'ATP2B3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 1

Table S5923. Gene #624: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ATP2B3 MUTATED	0	0	0	1	2
ATP2B3 WILD-TYPE	26	20	28	24	18

'ATP2B3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S5924. Gene #624: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ATP2B3 MUTATED	3	0	0
ATP2B3 WILD-TYPE	45	53	18

'ATP2B3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S5925. Gene #624: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ATP2B3 MUTATED	0	2	0	1	0
ATP2B3 WILD-TYPE	37	29	17	20	13

'ATP2B3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5926. Gene #624: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ATP2B3 MUTATED	2	1	0
ATP2B3 WILD-TYPE	69	26	21

'ATP2B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S5927. Gene #624: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ATP2B3 MUTATED	0	0	1	0	0	2	0
ATP2B3 WILD-TYPE	18	8	9	8	36	23	12

'ATP2B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S5928. Gene #624: 'ATP2B3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ATP2B3 MUTATED	0	0	0	1	2	0
ATP2B3 WILD-TYPE	17	32	13	31	14	7

'CCDC130 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S5929. Gene #625: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCDC130 MUTATED	0	1	2	1
CCDC130 WILD-TYPE	19	52	28	23

'CCDC130 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S5930. Gene #625: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCDC130 MUTATED	1	2	0	1
CCDC130 WILD-TYPE	34	28	34	25

'CCDC130 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S5931. Gene #625: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CCDC130 MUTATED	0	0	1	1	1
CCDC130 WILD-TYPE	29	18	12	8	12

'CCDC130 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5932. Gene #625: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CCDC130 MUTATED	2	1	0	0	0
CCDC130 WILD-TYPE	30	17	12	10	10

'CCDC130 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S5933. Gene #625: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCDC130 MUTATED	0	1	0	2	1
CCDC130 WILD-TYPE	26	19	28	23	19

'CCDC130 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S5934. Gene #625: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCDC130 MUTATED	2	1	1
CCDC130 WILD-TYPE	46	52	17

'CCDC130 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S5935. Gene #625: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCDC130 MUTATED	0	1	1	2	0
CCDC130 WILD-TYPE	37	30	16	19	13

'CCDC130 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S5936. Gene #625: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCDC130 MUTATED	2	1	1
CCDC130 WILD-TYPE	69	26	20

'CCDC130 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 1

Table S5937. Gene #625: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCDC130 MUTATED	1	0	1	1	0	0	1
CCDC130 WILD-TYPE	17	8	9	7	36	25	11

'CCDC130 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S5938. Gene #625: 'CCDC130 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCDC130 MUTATED	0	0	1	2	0	1
CCDC130 WILD-TYPE	17	32	12	30	16	6

'BAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S5939. Gene #626: 'BAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
BAT2 MUTATED	2	2	2	0
BAT2 WILD-TYPE	17	51	28	24

'BAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S5940. Gene #626: 'BAT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
BAT2 MUTATED	2	2	2	0
BAT2 WILD-TYPE	33	28	32	26

'BAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S5941. Gene #626: 'BAT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
BAT2 MUTATED	2	2	0	2	0
BAT2 WILD-TYPE	27	16	13	7	13

'BAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.78 (Fisher's exact test), Q value = 1

Table S5942. Gene #626: 'BAT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
BAT2 MUTATED	3	2	0	1	0
BAT2 WILD-TYPE	29	16	12	9	10

'BAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S5943. Gene #626: 'BAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
BAT2 MUTATED	2	0	1	2	0
BAT2 WILD-TYPE	24	20	27	23	20

'BAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S5944. Gene #626: 'BAT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
BAT2 MUTATED	2	3	0
BAT2 WILD-TYPE	46	50	18

'BAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 1

Table S5945. Gene #626: 'BAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
BAT2 MUTATED	2	0	1	1	1
BAT2 WILD-TYPE	35	31	16	20	12

'BAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S5946. Gene #626: 'BAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
BAT2 MUTATED	4	1	0
BAT2 WILD-TYPE	67	26	21

'BAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S5947. Gene #626: 'BAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
BAT2 MUTATED	2	0	1	0	2	0	0
BAT2 WILD-TYPE	16	8	9	8	34	25	12

'BAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S5948. Gene #626: 'BAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
BAT2 MUTATED	1	2	0	2	0	0
BAT2 WILD-TYPE	16	30	13	30	16	7

'STARD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S5949. Gene #627: 'STARD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
STARD3 MUTATED	1	1	1	0
STARD3 WILD-TYPE	18	52	29	24

'STARD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S5950. Gene #627: 'STARD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
STARD3 MUTATED	0	0	2	1
STARD3 WILD-TYPE	35	30	32	25

'STARD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S5951. Gene #627: 'STARD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
STARD3 MUTATED	1	0	1	0	1
STARD3 WILD-TYPE	25	20	27	25	19

'STARD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5952. Gene #627: 'STARD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
STARD3 MUTATED	1	2	0
STARD3 WILD-TYPE	47	51	18

'STARD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5953. Gene #627: 'STARD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
STARD3 MUTATED	1	1	0	1	0
STARD3 WILD-TYPE	36	30	17	20	13

'STARD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S5954. Gene #627: 'STARD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
STARD3 MUTATED	3	0	0
STARD3 WILD-TYPE	68	27	21

'STARD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S5955. Gene #627: 'STARD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
STARD3 MUTATED	0	0	0	1	2	0	0
STARD3 WILD-TYPE	18	8	10	7	34	25	12

'STARD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S5956. Gene #627: 'STARD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
STARD3 MUTATED	0	2	1	0	0	0
STARD3 WILD-TYPE	17	30	12	32	16	7

'C16ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S5957. Gene #628: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
C16ORF70 MUTATED	0	1	1	2
C16ORF70 WILD-TYPE	19	52	29	22

'C16ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5958. Gene #628: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
C16ORF70 MUTATED	1	1	1	1
C16ORF70 WILD-TYPE	34	29	33	25

'C16ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S5959. Gene #628: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
C16ORF70 MUTATED	0	0	1	2	1
C16ORF70 WILD-TYPE	26	20	27	23	19

'C16ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S5960. Gene #628: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
C16ORF70 MUTATED	2	1	1
C16ORF70 WILD-TYPE	46	52	17

'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S5961. Gene #628: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
C16ORF70 MUTATED	1	0	1	1	1
C16ORF70 WILD-TYPE	36	31	16	20	12

'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S5962. Gene #628: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
C16ORF70 MUTATED	2	1	1
C16ORF70 WILD-TYPE	69	26	20

'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S5963. Gene #628: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
C16ORF70 MUTATED	0	0	1	1	2	0	0
C16ORF70 WILD-TYPE	18	8	9	7	34	25	12

'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S5964. Gene #628: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
C16ORF70 MUTATED	0	1	0	2	1	0
C16ORF70 WILD-TYPE	17	31	13	30	15	7

'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S5965. Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
FBXW7 MUTATED	2	2	1	0
FBXW7 WILD-TYPE	17	51	29	24

'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S5966. Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
FBXW7 MUTATED	1	1	2	1
FBXW7 WILD-TYPE	34	29	32	25

'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S5967. Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
FBXW7 MUTATED	2	0	1	1	0
FBXW7 WILD-TYPE	27	18	12	8	13

'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S5968. Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
FBXW7 MUTATED	2	0	1	1	0
FBXW7 WILD-TYPE	30	18	11	9	10

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S5969. Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
FBXW7 MUTATED	0	0	2	2	1
FBXW7 WILD-TYPE	26	20	26	23	19

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S5970. Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
FBXW7 MUTATED	2	3	0
FBXW7 WILD-TYPE	46	50	18

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S5971. Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
FBXW7 MUTATED	1	2	0	2	0
FBXW7 WILD-TYPE	36	29	17	19	13

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S5972. Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
FBXW7 MUTATED	4	1	0
FBXW7 WILD-TYPE	67	26	21

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00972 (Fisher's exact test), Q value = 1

Table S5973. Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
FBXW7 MUTATED	0	1	3	0	1	0	0
FBXW7 WILD-TYPE	18	7	7	8	35	25	12

Figure S248. Get High-res Image Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S5974. Gene #629: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
FBXW7 MUTATED	1	1	1	2	0	0
FBXW7 WILD-TYPE	16	31	12	30	16	7

'LATS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 1

Table S5975. Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LATS1 MUTATED	0	1	4	0
LATS1 WILD-TYPE	19	52	26	24

'LATS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S5976. Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LATS1 MUTATED	3	0	1	1
LATS1 WILD-TYPE	32	30	33	25

'LATS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S5977. Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
LATS1 MUTATED	2	0	1	1	0
LATS1 WILD-TYPE	27	18	12	8	13

'LATS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S5978. Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
LATS1 MUTATED	3	0	1	0	0
LATS1 WILD-TYPE	29	18	11	10	10

'LATS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5979. Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LATS1 MUTATED	1	1	1	1	1
LATS1 WILD-TYPE	25	19	27	24	19

'LATS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00673 (Fisher's exact test), Q value = 1

Table S5980. Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LATS1 MUTATED	2	0	3
LATS1 WILD-TYPE	46	53	15

Figure S249. Get High-res Image Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LATS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 1

Table S5981. Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LATS1 MUTATED	1	2	0	1	1
LATS1 WILD-TYPE	36	29	17	20	12

'LATS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0327 (Fisher's exact test), Q value = 1

Table S5982. Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LATS1 MUTATED	1	1	3
LATS1 WILD-TYPE	70	26	18

Figure S250. Get High-res Image Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LATS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S5983. Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LATS1 MUTATED	1	0	1	0	0	2	1
LATS1 WILD-TYPE	17	8	9	8	36	23	11

'LATS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0593 (Fisher's exact test), Q value = 1

Table S5984. Gene #630: 'LATS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LATS1 MUTATED	0	0	0	2	3	0
LATS1 WILD-TYPE	17	32	13	30	13	7

'LARP1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S5985. Gene #631: 'LARP1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LARP1B MUTATED	0	1	1	1
LARP1B WILD-TYPE	19	52	29	23

'LARP1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S5986. Gene #631: 'LARP1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LARP1B MUTATED	1	1	0	1
LARP1B WILD-TYPE	34	29	34	25

'LARP1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 1

Table S5987. Gene #631: 'LARP1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LARP1B MUTATED	0	2	0	1	0
LARP1B WILD-TYPE	26	18	28	24	20

'LARP1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 1

Table S5988. Gene #631: 'LARP1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LARP1B MUTATED	1	0	2
LARP1B WILD-TYPE	47	53	16

Figure S251. Get High-res Image Gene #631: 'LARP1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LARP1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 1

Table S5989. Gene #631: 'LARP1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LARP1B MUTATED	0	0	0	2	1
LARP1B WILD-TYPE	37	31	17	19	12

Figure S252. Get High-res Image Gene #631: 'LARP1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LARP1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S5990. Gene #631: 'LARP1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LARP1B MUTATED	1	0	2
LARP1B WILD-TYPE	70	27	19

'LARP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S5991. Gene #631: 'LARP1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LARP1B MUTATED	0	0	1	0	0	1	1
LARP1B WILD-TYPE	18	8	9	8	36	24	11

'LARP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S5992. Gene #631: 'LARP1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LARP1B MUTATED	0	0	0	1	1	1
LARP1B WILD-TYPE	17	32	13	31	15	6

'PTPN14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S5993. Gene #632: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PTPN14 MUTATED	2	1	2	1
PTPN14 WILD-TYPE	17	52	28	23

'PTPN14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S5994. Gene #632: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PTPN14 MUTATED	3	2	1	0
PTPN14 WILD-TYPE	32	28	33	26

'PTPN14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S5995. Gene #632: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PTPN14 MUTATED	2	0	1	1	1
PTPN14 WILD-TYPE	27	18	12	8	12

'PTPN14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S5996. Gene #632: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PTPN14 MUTATED	3	0	2	0	0
PTPN14 WILD-TYPE	29	18	10	10	10

'PTPN14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S5997. Gene #632: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PTPN14 MUTATED	1	1	1	3	0
PTPN14 WILD-TYPE	25	19	27	22	20

'PTPN14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S5998. Gene #632: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PTPN14 MUTATED	4	1	1
PTPN14 WILD-TYPE	44	52	17

'PTPN14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S5999. Gene #632: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PTPN14 MUTATED	2	0	2	1	1
PTPN14 WILD-TYPE	35	31	15	20	12

'PTPN14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S6000. Gene #632: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PTPN14 MUTATED	3	2	1
PTPN14 WILD-TYPE	68	25	20

'PTPN14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S6001. Gene #632: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PTPN14 MUTATED	0	0	1	0	2	1	2
PTPN14 WILD-TYPE	18	8	9	8	34	24	10

'PTPN14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S6002. Gene #632: 'PTPN14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PTPN14 MUTATED	0	2	0	3	1	0
PTPN14 WILD-TYPE	17	30	13	29	15	7

'PHKA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S6003. Gene #633: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PHKA2 MUTATED	0	2	3	1
PHKA2 WILD-TYPE	19	51	27	23

'PHKA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 1

Table S6004. Gene #633: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PHKA2 MUTATED	3	0	0	3
PHKA2 WILD-TYPE	32	30	34	23

'PHKA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S6005. Gene #633: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PHKA2 MUTATED	1	1	0	2	1
PHKA2 WILD-TYPE	28	17	13	7	12

'PHKA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S6006. Gene #633: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PHKA2 MUTATED	2	1	0	1	1
PHKA2 WILD-TYPE	30	17	12	9	9

'PHKA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S6007. Gene #633: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PHKA2 MUTATED	0	2	0	2	2
PHKA2 WILD-TYPE	26	18	28	23	18

'PHKA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S6008. Gene #633: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PHKA2 MUTATED	3	1	2
PHKA2 WILD-TYPE	45	52	16

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S6009. Gene #633: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PHKA2 MUTATED	1	2	0	2	1
PHKA2 WILD-TYPE	36	29	17	19	12

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S6010. Gene #633: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PHKA2 MUTATED	3	1	2
PHKA2 WILD-TYPE	68	26	19

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S6011. Gene #633: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PHKA2 MUTATED	1	0	1	0	1	2	1
PHKA2 WILD-TYPE	17	8	9	8	35	23	11

'PHKA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S6012. Gene #633: 'PHKA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PHKA2 MUTATED	0	0	1	3	2	0
PHKA2 WILD-TYPE	17	32	12	29	14	7

'ABCC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 1

Table S6013. Gene #634: 'ABCC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ABCC3 MUTATED	0	0	3	0
ABCC3 WILD-TYPE	19	53	27	24

Figure S253. Get High-res Image Gene #634: 'ABCC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S6014. Gene #634: 'ABCC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ABCC3 MUTATED	2	0	0	1
ABCC3 WILD-TYPE	33	30	34	25

'ABCC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S6015. Gene #634: 'ABCC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ABCC3 MUTATED	0	0	1	2	0
ABCC3 WILD-TYPE	26	20	27	23	20

'ABCC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S6016. Gene #634: 'ABCC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ABCC3 MUTATED	2	0	1
ABCC3 WILD-TYPE	46	53	17

'ABCC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S6017. Gene #634: 'ABCC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ABCC3 MUTATED	0	2	0	1	0
ABCC3 WILD-TYPE	37	29	17	20	13

'ABCC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S6018. Gene #634: 'ABCC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ABCC3 MUTATED	1	1	1
ABCC3 WILD-TYPE	70	26	20

'ABCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0615 (Fisher's exact test), Q value = 1

Table S6019. Gene #634: 'ABCC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ABCC3 MUTATED	0	0	2	0	0	1	0
ABCC3 WILD-TYPE	18	8	8	8	36	24	12

'ABCC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S6020. Gene #634: 'ABCC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ABCC3 MUTATED	0	0	0	2	1	0
ABCC3 WILD-TYPE	17	32	13	30	15	7

'CPNE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S6021. Gene #635: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CPNE2 MUTATED	0	0	2	1
CPNE2 WILD-TYPE	19	53	28	23

'CPNE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 1

Table S6022. Gene #635: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CPNE2 MUTATED	3	0	0	0
CPNE2 WILD-TYPE	32	30	34	26

'CPNE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S6023. Gene #635: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
CPNE2 MUTATED	1	0	1	1	0
CPNE2 WILD-TYPE	28	18	12	8	13

'CPNE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S6024. Gene #635: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
CPNE2 MUTATED	2	0	1	0	0
CPNE2 WILD-TYPE	30	18	11	10	10

'CPNE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S6025. Gene #635: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CPNE2 MUTATED	0	1	0	1	1
CPNE2 WILD-TYPE	26	19	28	24	19

'CPNE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S6026. Gene #635: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CPNE2 MUTATED	1	1	1
CPNE2 WILD-TYPE	47	52	17

'CPNE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S6027. Gene #635: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CPNE2 MUTATED	0	1	0	1	1
CPNE2 WILD-TYPE	37	30	17	20	12

'CPNE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S6028. Gene #635: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CPNE2 MUTATED	2	0	1
CPNE2 WILD-TYPE	69	27	20

'CPNE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S6029. Gene #635: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CPNE2 MUTATED	0	0	1	0	0	1	1
CPNE2 WILD-TYPE	18	8	9	8	36	24	11

'CPNE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S6030. Gene #635: 'CPNE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CPNE2 MUTATED	0	0	1	1	1	0
CPNE2 WILD-TYPE	17	32	12	31	15	7

'MICALCL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S6031. Gene #636: 'MICALCL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
MICALCL MUTATED	0	1	3	0
MICALCL WILD-TYPE	19	52	27	24

'MICALCL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S6032. Gene #636: 'MICALCL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
MICALCL MUTATED	3	1	0	0
MICALCL WILD-TYPE	32	29	34	26

'MICALCL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S6033. Gene #636: 'MICALCL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
MICALCL MUTATED	1	0	1	2	0
MICALCL WILD-TYPE	25	20	27	23	20

'MICALCL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6034. Gene #636: 'MICALCL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
MICALCL MUTATED	2	2	0
MICALCL WILD-TYPE	46	51	18

'MICALCL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S6035. Gene #636: 'MICALCL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
MICALCL MUTATED	0	1	0	2	1
MICALCL WILD-TYPE	37	30	17	19	12

'MICALCL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S6036. Gene #636: 'MICALCL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
MICALCL MUTATED	2	1	1
MICALCL WILD-TYPE	69	26	20

'MICALCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 1

Table S6037. Gene #636: 'MICALCL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
MICALCL MUTATED	0	0	1	1	0	0	1
MICALCL WILD-TYPE	18	8	9	7	36	25	11

Figure S254. Get High-res Image Gene #636: 'MICALCL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MICALCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S6038. Gene #636: 'MICALCL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
MICALCL MUTATED	0	0	0	3	0	0
MICALCL WILD-TYPE	17	32	13	29	16	7

'SPAG9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 1

Table S6039. Gene #637: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SPAG9 MUTATED	1	0	3	0
SPAG9 WILD-TYPE	18	53	27	24

Figure S255. Get High-res Image Gene #637: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPAG9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S6040. Gene #637: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SPAG9 MUTATED	2	1	1	0
SPAG9 WILD-TYPE	33	29	33	26

'SPAG9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6041. Gene #637: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SPAG9 MUTATED	1	1	1	1	0
SPAG9 WILD-TYPE	25	19	27	24	20

'SPAG9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S6042. Gene #637: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SPAG9 MUTATED	1	1	2
SPAG9 WILD-TYPE	47	52	16

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S6043. Gene #637: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SPAG9 MUTATED	1	1	0	1	1
SPAG9 WILD-TYPE	36	30	17	20	12

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S6044. Gene #637: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SPAG9 MUTATED	2	1	1
SPAG9 WILD-TYPE	69	26	20

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S6045. Gene #637: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SPAG9 MUTATED	0	0	1	0	1	1	1
SPAG9 WILD-TYPE	18	8	9	8	35	24	11

'SPAG9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S6046. Gene #637: 'SPAG9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SPAG9 MUTATED	0	1	0	1	1	1
SPAG9 WILD-TYPE	17	31	13	31	15	6

'SLITRK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S6047. Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SLITRK3 MUTATED	0	2	2	0
SLITRK3 WILD-TYPE	19	51	28	24

'SLITRK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S6048. Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SLITRK3 MUTATED	2	2	0	0
SLITRK3 WILD-TYPE	33	28	34	26

'SLITRK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S6049. Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
SLITRK3 MUTATED	1	1	0	1	0
SLITRK3 WILD-TYPE	28	17	13	8	13

'SLITRK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S6050. Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
SLITRK3 MUTATED	1	1	0	1	0
SLITRK3 WILD-TYPE	31	17	12	9	10

'SLITRK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0028 (Fisher's exact test), Q value = 1

Table S6051. Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SLITRK3 MUTATED	0	0	0	4	0
SLITRK3 WILD-TYPE	26	20	28	21	20

Figure S256. Get High-res Image Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLITRK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0563 (Fisher's exact test), Q value = 1

Table S6052. Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SLITRK3 MUTATED	4	0	0
SLITRK3 WILD-TYPE	44	53	18

'SLITRK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S6053. Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SLITRK3 MUTATED	0	1	1	2	0
SLITRK3 WILD-TYPE	37	30	16	19	13

'SLITRK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0613 (Fisher's exact test), Q value = 1

Table S6054. Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SLITRK3 MUTATED	1	3	0
SLITRK3 WILD-TYPE	70	24	21

'SLITRK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 1

Table S6055. Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SLITRK3 MUTATED	1	0	2	1	0	0	0
SLITRK3 WILD-TYPE	17	8	8	7	36	25	12

Figure S257. Get High-res Image Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLITRK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S6056. Gene #638: 'SLITRK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SLITRK3 MUTATED	0	0	0	4	0	0
SLITRK3 WILD-TYPE	17	32	13	28	16	7

'HIST1H2BE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S6057. Gene #639: 'HIST1H2BE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
HIST1H2BE MUTATED	0	1	2	0
HIST1H2BE WILD-TYPE	19	52	28	24

'HIST1H2BE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S6058. Gene #639: 'HIST1H2BE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
HIST1H2BE MUTATED	1	2	0	0
HIST1H2BE WILD-TYPE	34	28	34	26

'HIST1H2BE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S6059. Gene #639: 'HIST1H2BE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
HIST1H2BE MUTATED	0	1	0	2	0
HIST1H2BE WILD-TYPE	26	19	28	23	20

'HIST1H2BE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S6060. Gene #639: 'HIST1H2BE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
HIST1H2BE MUTATED	2	1	0
HIST1H2BE WILD-TYPE	46	52	18

'HIST1H2BE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S6061. Gene #639: 'HIST1H2BE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
HIST1H2BE MUTATED	0	0	1	1	1
HIST1H2BE WILD-TYPE	37	31	16	20	12

'HIST1H2BE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0627 (Fisher's exact test), Q value = 1

Table S6062. Gene #639: 'HIST1H2BE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
HIST1H2BE MUTATED	0	2	1
HIST1H2BE WILD-TYPE	71	25	20

'NGF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S6063. Gene #640: 'NGF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NGF MUTATED	1	0	1	2
NGF WILD-TYPE	18	53	29	22

'NGF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S6064. Gene #640: 'NGF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NGF MUTATED	1	0	2	1
NGF WILD-TYPE	34	30	32	25

'NGF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 1

Table S6065. Gene #640: 'NGF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NGF MUTATED	1	2	0	1	0
NGF WILD-TYPE	28	16	13	8	13

'NGF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S6066. Gene #640: 'NGF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NGF MUTATED	2	2	0	0	0
NGF WILD-TYPE	30	16	12	10	10

'NGF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S6067. Gene #640: 'NGF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NGF MUTATED	0	1	1	1	1
NGF WILD-TYPE	26	19	27	24	19

'NGF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S6068. Gene #640: 'NGF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NGF MUTATED	1	3	0
NGF WILD-TYPE	47	50	18

'NGF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6069. Gene #640: 'NGF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NGF MUTATED	2	1	0	1	0
NGF WILD-TYPE	35	30	17	20	13

'NGF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S6070. Gene #640: 'NGF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NGF MUTATED	4	0	0
NGF WILD-TYPE	67	27	21

'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S6071. Gene #640: 'NGF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NGF MUTATED	0	0	1	1	1	1	0
NGF WILD-TYPE	18	8	9	7	35	24	12

'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S6072. Gene #640: 'NGF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NGF MUTATED	0	2	1	1	0	0
NGF WILD-TYPE	17	30	12	31	16	7

'EHMT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S6073. Gene #641: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EHMT2 MUTATED	0	1	1	1
EHMT2 WILD-TYPE	19	52	29	23

'EHMT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S6074. Gene #641: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EHMT2 MUTATED	2	1	0	0
EHMT2 WILD-TYPE	33	29	34	26

'EHMT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0167 (Fisher's exact test), Q value = 1

Table S6075. Gene #641: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EHMT2 MUTATED	0	0	0	3	0
EHMT2 WILD-TYPE	26	20	28	22	20

Figure S258. Get High-res Image Gene #641: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EHMT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S6076. Gene #641: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EHMT2 MUTATED	3	0	0
EHMT2 WILD-TYPE	45	53	18

'EHMT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 1

Table S6077. Gene #641: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EHMT2 MUTATED	0	0	2	1	0
EHMT2 WILD-TYPE	37	31	15	20	13

'EHMT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S6078. Gene #641: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EHMT2 MUTATED	1	2	0
EHMT2 WILD-TYPE	70	25	21

'EHMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S6079. Gene #641: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EHMT2 MUTATED	1	0	1	0	1	0	0
EHMT2 WILD-TYPE	17	8	9	8	35	25	12

'EHMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S6080. Gene #641: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EHMT2 MUTATED	0	0	0	3	0	0
EHMT2 WILD-TYPE	17	32	13	29	16	7

'PLEKHG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S6081. Gene #642: 'PLEKHG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PLEKHG2 MUTATED	1	1	2	1
PLEKHG2 WILD-TYPE	18	52	28	23

'PLEKHG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S6082. Gene #642: 'PLEKHG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PLEKHG2 MUTATED	3	1	0	1
PLEKHG2 WILD-TYPE	32	29	34	25

'PLEKHG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S6083. Gene #642: 'PLEKHG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PLEKHG2 MUTATED	1	1	1	1	0
PLEKHG2 WILD-TYPE	28	17	12	8	13

'PLEKHG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S6084. Gene #642: 'PLEKHG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PLEKHG2 MUTATED	3	1	0	0	0
PLEKHG2 WILD-TYPE	29	17	12	10	10

'PLEKHG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S6085. Gene #642: 'PLEKHG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PLEKHG2 MUTATED	1	0	0	3	1
PLEKHG2 WILD-TYPE	25	20	28	22	19

'PLEKHG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S6086. Gene #642: 'PLEKHG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PLEKHG2 MUTATED	3	1	1
PLEKHG2 WILD-TYPE	45	52	17

'PLEKHG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6087. Gene #642: 'PLEKHG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PLEKHG2 MUTATED	2	1	1	1	0
PLEKHG2 WILD-TYPE	35	30	16	20	13

'PLEKHG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6088. Gene #642: 'PLEKHG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PLEKHG2 MUTATED	3	1	1
PLEKHG2 WILD-TYPE	68	26	20

'PLEKHG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S6089. Gene #642: 'PLEKHG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PLEKHG2 MUTATED	1	0	1	0	0	3	0
PLEKHG2 WILD-TYPE	17	8	9	8	36	22	12

'PLEKHG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S6090. Gene #642: 'PLEKHG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PLEKHG2 MUTATED	0	1	0	3	1	0
PLEKHG2 WILD-TYPE	17	31	13	29	15	7

'SRFBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S6091. Gene #643: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
SRFBP1 MUTATED	0	1	1	1
SRFBP1 WILD-TYPE	19	52	29	23

'SRFBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S6092. Gene #643: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
SRFBP1 MUTATED	2	1	0	0
SRFBP1 WILD-TYPE	33	29	34	26

'SRFBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S6093. Gene #643: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
SRFBP1 MUTATED	1	1	0	1	0
SRFBP1 WILD-TYPE	25	19	28	24	20

'SRFBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S6094. Gene #643: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
SRFBP1 MUTATED	1	1	1
SRFBP1 WILD-TYPE	47	52	17

'SRFBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S6095. Gene #643: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
SRFBP1 MUTATED	1	0	0	2	0
SRFBP1 WILD-TYPE	36	31	17	19	13

'SRFBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S6096. Gene #643: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
SRFBP1 MUTATED	2	0	1
SRFBP1 WILD-TYPE	69	27	20

'SRFBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S6097. Gene #643: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
SRFBP1 MUTATED	0	0	1	0	1	0	1
SRFBP1 WILD-TYPE	18	8	9	8	35	25	11

'SRFBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S6098. Gene #643: 'SRFBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
SRFBP1 MUTATED	0	1	0	1	0	1
SRFBP1 WILD-TYPE	17	31	13	31	16	6

'TSC22D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 1

Table S6099. Gene #644: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TSC22D1 MUTATED	2	0	1	0
TSC22D1 WILD-TYPE	17	53	29	24

Figure S259. Get High-res Image Gene #644: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TSC22D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S6100. Gene #644: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TSC22D1 MUTATED	2	1	0	0
TSC22D1 WILD-TYPE	33	29	34	26

'TSC22D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S6101. Gene #644: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TSC22D1 MUTATED	1	0	0	2	0
TSC22D1 WILD-TYPE	25	20	28	23	20

'TSC22D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S6102. Gene #644: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TSC22D1 MUTATED	3	0	0
TSC22D1 WILD-TYPE	45	53	18

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S6103. Gene #644: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TSC22D1 MUTATED	1	0	1	1	0
TSC22D1 WILD-TYPE	36	31	16	20	13

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6104. Gene #644: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TSC22D1 MUTATED	2	1	0
TSC22D1 WILD-TYPE	69	26	21

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S6105. Gene #644: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TSC22D1 MUTATED	1	0	1	0	0	0	1
TSC22D1 WILD-TYPE	17	8	9	8	36	25	11

'TSC22D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S6106. Gene #644: 'TSC22D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TSC22D1 MUTATED	1	0	0	2	0	0
TSC22D1 WILD-TYPE	16	32	13	30	16	7

'EEF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S6107. Gene #645: 'EEF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
EEF2 MUTATED	0	3	1	0
EEF2 WILD-TYPE	19	50	29	24

'EEF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 1

Table S6108. Gene #645: 'EEF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
EEF2 MUTATED	3	0	1	0
EEF2 WILD-TYPE	32	30	33	26

'EEF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S6109. Gene #645: 'EEF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
EEF2 MUTATED	1	1	0	1	0
EEF2 WILD-TYPE	28	17	13	8	13

'EEF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6110. Gene #645: 'EEF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
EEF2 MUTATED	2	1	0	0	0
EEF2 WILD-TYPE	30	17	12	10	10

'EEF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6111. Gene #645: 'EEF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
EEF2 MUTATED	1	1	1	1	0
EEF2 WILD-TYPE	25	19	27	24	20

'EEF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0567 (Fisher's exact test), Q value = 1

Table S6112. Gene #645: 'EEF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
EEF2 MUTATED	4	0	0
EEF2 WILD-TYPE	44	53	18

'EEF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S6113. Gene #645: 'EEF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
EEF2 MUTATED	2	0	0	1	1
EEF2 WILD-TYPE	35	31	17	20	12

'EEF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S6114. Gene #645: 'EEF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
EEF2 MUTATED	2	1	1
EEF2 WILD-TYPE	69	26	20

'EEF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S6115. Gene #645: 'EEF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
EEF2 MUTATED	1	0	1	0	1	1	0
EEF2 WILD-TYPE	17	8	9	8	35	24	12

'EEF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S6116. Gene #645: 'EEF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
EEF2 MUTATED	0	1	0	2	1	0
EEF2 WILD-TYPE	17	31	13	30	15	7

'E2F7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S6117. Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
E2F7 MUTATED	1	1	1	0
E2F7 WILD-TYPE	18	52	29	24

'E2F7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S6118. Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
E2F7 MUTATED	2	1	0	0
E2F7 WILD-TYPE	33	29	34	26

'E2F7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 1

Table S6119. Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
E2F7 MUTATED	0	1	0	2	0
E2F7 WILD-TYPE	29	17	13	7	13

Figure S260. Get High-res Image Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'E2F7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S6120. Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
E2F7 MUTATED	1	1	0	1	0
E2F7 WILD-TYPE	31	17	12	9	10

'E2F7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 1

Table S6121. Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
E2F7 MUTATED	0	0	0	3	0
E2F7 WILD-TYPE	26	20	28	22	20

Figure S261. Get High-res Image Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'E2F7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S6122. Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
E2F7 MUTATED	3	0	0
E2F7 WILD-TYPE	45	53	18

'E2F7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S6123. Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
E2F7 MUTATED	1	0	1	1	0
E2F7 WILD-TYPE	36	31	16	20	13

'E2F7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S6124. Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
E2F7 MUTATED	1	2	0
E2F7 WILD-TYPE	70	25	21

'E2F7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S6125. Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
E2F7 MUTATED	1	0	1	0	1	0	0
E2F7 WILD-TYPE	17	8	9	8	35	25	12

'E2F7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S6126. Gene #646: 'E2F7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
E2F7 MUTATED	0	0	0	3	0	0
E2F7 WILD-TYPE	17	32	13	29	16	7

'NR2C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S6127. Gene #647: 'NR2C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
NR2C1 MUTATED	0	1	1	1
NR2C1 WILD-TYPE	19	52	29	23

'NR2C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S6128. Gene #647: 'NR2C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
NR2C1 MUTATED	2	0	1	0
NR2C1 WILD-TYPE	33	30	33	26

'NR2C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S6129. Gene #647: 'NR2C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
NR2C1 MUTATED	1	1	0	1	0
NR2C1 WILD-TYPE	28	17	13	8	13

'NR2C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6130. Gene #647: 'NR2C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
NR2C1 MUTATED	2	1	0	0	0
NR2C1 WILD-TYPE	30	17	12	10	10

'NR2C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6131. Gene #647: 'NR2C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
NR2C1 MUTATED	1	0	1	1	0
NR2C1 WILD-TYPE	25	20	27	24	20

'NR2C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6132. Gene #647: 'NR2C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
NR2C1 MUTATED	1	2	0
NR2C1 WILD-TYPE	47	51	18

'NR2C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S6133. Gene #647: 'NR2C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
NR2C1 MUTATED	2	0	0	1	0
NR2C1 WILD-TYPE	35	31	17	20	13

'NR2C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S6134. Gene #647: 'NR2C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
NR2C1 MUTATED	3	0	0
NR2C1 WILD-TYPE	68	27	21

'NR2C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S6135. Gene #647: 'NR2C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
NR2C1 MUTATED	0	0	1	0	2	0	0
NR2C1 WILD-TYPE	18	8	9	8	34	25	12

'NR2C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S6136. Gene #647: 'NR2C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
NR2C1 MUTATED	0	2	0	1	0	0
NR2C1 WILD-TYPE	17	30	13	31	16	7

'ASPM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S6137. Gene #648: 'ASPM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ASPM MUTATED	3	2	2	2
ASPM WILD-TYPE	16	51	28	22

'ASPM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S6138. Gene #648: 'ASPM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ASPM MUTATED	5	1	2	1
ASPM WILD-TYPE	30	29	32	25

'ASPM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S6139. Gene #648: 'ASPM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ASPM MUTATED	2	0	2	3	2
ASPM WILD-TYPE	24	20	26	22	18

'ASPM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S6140. Gene #648: 'ASPM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ASPM MUTATED	3	6	0
ASPM WILD-TYPE	45	47	18

'ASPM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S6141. Gene #648: 'ASPM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ASPM MUTATED	2	2	1	4	0
ASPM WILD-TYPE	35	29	16	17	13

'ASPM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S6142. Gene #648: 'ASPM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ASPM MUTATED	8	1	0
ASPM WILD-TYPE	63	26	21

'ASPM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S6143. Gene #648: 'ASPM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ASPM MUTATED	0	0	1	1	4	2	0
ASPM WILD-TYPE	18	8	9	7	32	23	12

'ASPM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S6144. Gene #648: 'ASPM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ASPM MUTATED	1	1	3	3	0	0
ASPM WILD-TYPE	16	31	10	29	16	7

'CCDC108 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S6145. Gene #649: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CCDC108 MUTATED	0	1	1	1
CCDC108 WILD-TYPE	19	52	29	23

'CCDC108 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S6146. Gene #649: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CCDC108 MUTATED	2	0	1	0
CCDC108 WILD-TYPE	33	30	33	26

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S6147. Gene #649: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CCDC108 MUTATED	1	0	0	2	0
CCDC108 WILD-TYPE	25	20	28	23	20

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S6148. Gene #649: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CCDC108 MUTATED	3	0	0
CCDC108 WILD-TYPE	45	53	18

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S6149. Gene #649: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CCDC108 MUTATED	1	0	1	1	0
CCDC108 WILD-TYPE	36	31	16	20	13

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6150. Gene #649: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CCDC108 MUTATED	2	1	0
CCDC108 WILD-TYPE	69	26	21

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S6151. Gene #649: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CCDC108 MUTATED	1	0	1	0	1	0	0
CCDC108 WILD-TYPE	17	8	9	8	35	25	12

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S6152. Gene #649: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CCDC108 MUTATED	1	0	0	2	0	0
CCDC108 WILD-TYPE	16	32	13	30	16	7

'PDGFRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S6153. Gene #650: 'PDGFRB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
PDGFRB MUTATED	0	3	1	0
PDGFRB WILD-TYPE	19	50	29	24

'PDGFRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S6154. Gene #650: 'PDGFRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
PDGFRB MUTATED	3	0	1	0
PDGFRB WILD-TYPE	32	30	33	26

'PDGFRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S6155. Gene #650: 'PDGFRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
PDGFRB MUTATED	1	0	0	1	1
PDGFRB WILD-TYPE	28	18	13	8	12

'PDGFRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6156. Gene #650: 'PDGFRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
PDGFRB MUTATED	2	1	0	0	0
PDGFRB WILD-TYPE	30	17	12	10	10

'PDGFRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S6157. Gene #650: 'PDGFRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
PDGFRB MUTATED	2	0	0	1	0
PDGFRB WILD-TYPE	24	20	28	24	20

'PDGFRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6158. Gene #650: 'PDGFRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
PDGFRB MUTATED	1	2	0
PDGFRB WILD-TYPE	47	51	18

'PDGFRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S6159. Gene #650: 'PDGFRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
PDGFRB MUTATED	2	0	0	1	0
PDGFRB WILD-TYPE	35	31	17	20	13

'PDGFRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S6160. Gene #650: 'PDGFRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
PDGFRB MUTATED	3	0	0
PDGFRB WILD-TYPE	68	27	21

'PDGFRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S6161. Gene #650: 'PDGFRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
PDGFRB MUTATED	0	0	1	0	2	0	0
PDGFRB WILD-TYPE	18	8	9	8	34	25	12

'PDGFRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S6162. Gene #650: 'PDGFRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
PDGFRB MUTATED	2	0	0	1	0	0
PDGFRB WILD-TYPE	15	32	13	31	16	7

'TWISTNB MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6163. Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
TWISTNB MUTATED	0	2	1	0
TWISTNB WILD-TYPE	19	51	29	24

'TWISTNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 1

Table S6164. Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
TWISTNB MUTATED	3	0	0	0
TWISTNB WILD-TYPE	32	30	34	26

'TWISTNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 1

Table S6165. Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
TWISTNB MUTATED	0	1	0	2	0
TWISTNB WILD-TYPE	29	17	13	7	13

Figure S262. Get High-res Image Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TWISTNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S6166. Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
TWISTNB MUTATED	1	1	0	1	0
TWISTNB WILD-TYPE	31	17	12	9	10

'TWISTNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S6167. Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
TWISTNB MUTATED	0	0	1	2	0
TWISTNB WILD-TYPE	26	20	27	23	20

'TWISTNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S6168. Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
TWISTNB MUTATED	3	0	0
TWISTNB WILD-TYPE	45	53	18

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S6169. Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
TWISTNB MUTATED	1	0	1	1	0
TWISTNB WILD-TYPE	36	31	16	20	13

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S6170. Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
TWISTNB MUTATED	3	0	0
TWISTNB WILD-TYPE	68	27	21

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S6171. Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
TWISTNB MUTATED	0	0	1	0	2	0	0
TWISTNB WILD-TYPE	18	8	9	8	34	25	12

'TWISTNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S6172. Gene #651: 'TWISTNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
TWISTNB MUTATED	0	1	0	2	0	0
TWISTNB WILD-TYPE	17	31	13	30	16	7

'GRIN3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S6173. Gene #652: 'GRIN3B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GRIN3B MUTATED	0	3	1	0
GRIN3B WILD-TYPE	19	50	29	24

'GRIN3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S6174. Gene #652: 'GRIN3B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GRIN3B MUTATED	2	1	0	1
GRIN3B WILD-TYPE	33	29	34	25

'GRIN3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S6175. Gene #652: 'GRIN3B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GRIN3B MUTATED	0	2	0	1	1
GRIN3B WILD-TYPE	26	18	28	24	19

'GRIN3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S6176. Gene #652: 'GRIN3B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GRIN3B MUTATED	2	1	1
GRIN3B WILD-TYPE	46	52	17

'GRIN3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S6177. Gene #652: 'GRIN3B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GRIN3B MUTATED	0	1	1	2	0
GRIN3B WILD-TYPE	37	30	16	19	13

'GRIN3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S6178. Gene #652: 'GRIN3B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GRIN3B MUTATED	2	1	1
GRIN3B WILD-TYPE	69	26	20

'GRIN3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S6179. Gene #652: 'GRIN3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GRIN3B MUTATED	1	0	2	0	1	0	0
GRIN3B WILD-TYPE	17	8	8	8	35	25	12

'GRIN3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S6180. Gene #652: 'GRIN3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GRIN3B MUTATED	0	0	1	2	0	1
GRIN3B WILD-TYPE	17	32	12	30	16	6

'ENTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S6181. Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
ENTPD2 MUTATED	1	2	1	0
ENTPD2 WILD-TYPE	18	51	29	24

'ENTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S6182. Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
ENTPD2 MUTATED	4	0	0	0
ENTPD2 WILD-TYPE	31	30	34	26

Figure S263. Get High-res Image Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ENTPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 1

Table S6183. Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
ENTPD2 MUTATED	0	1	0	2	0
ENTPD2 WILD-TYPE	29	17	13	7	13

Figure S264. Get High-res Image Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ENTPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S6184. Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
ENTPD2 MUTATED	1	1	0	1	0
ENTPD2 WILD-TYPE	31	17	12	9	10

'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S6185. Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
ENTPD2 MUTATED	1	0	0	2	1
ENTPD2 WILD-TYPE	25	20	28	23	19

'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6186. Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
ENTPD2 MUTATED	2	2	0
ENTPD2 WILD-TYPE	46	51	18

'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6187. Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
ENTPD2 MUTATED	2	1	0	1	0
ENTPD2 WILD-TYPE	35	30	17	20	13

'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6188. Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
ENTPD2 MUTATED	3	1	0
ENTPD2 WILD-TYPE	68	26	21

'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S6189. Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
ENTPD2 MUTATED	0	0	1	1	1	1	0
ENTPD2 WILD-TYPE	18	8	9	7	35	24	12

'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S6190. Gene #653: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
ENTPD2 MUTATED	0	1	1	2	0	0
ENTPD2 WILD-TYPE	17	31	12	30	16	7

'STK11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S6191. Gene #654: 'STK11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
STK11 MUTATED	1	2	1	0
STK11 WILD-TYPE	18	51	29	24

'STK11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 1

Table S6192. Gene #654: 'STK11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
STK11 MUTATED	4	0	0	0
STK11 WILD-TYPE	31	30	34	26

Figure S265. Get High-res Image Gene #654: 'STK11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STK11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 1

Table S6193. Gene #654: 'STK11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
STK11 MUTATED	0	1	0	3	0
STK11 WILD-TYPE	26	19	28	22	20

'STK11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S6194. Gene #654: 'STK11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
STK11 MUTATED	3	1	0
STK11 WILD-TYPE	45	52	18

'STK11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S6195. Gene #654: 'STK11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
STK11 MUTATED	1	0	1	1	1
STK11 WILD-TYPE	36	31	16	20	12

'STK11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S6196. Gene #654: 'STK11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
STK11 MUTATED	2	1	1
STK11 WILD-TYPE	69	26	20

'STK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S6197. Gene #654: 'STK11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
STK11 MUTATED	1	0	1	0	0	2	0
STK11 WILD-TYPE	17	8	9	8	36	23	12

'STK11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S6198. Gene #654: 'STK11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
STK11 MUTATED	0	0	0	3	1	0
STK11 WILD-TYPE	17	32	13	29	15	7

'LBR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S6199. Gene #655: 'LBR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
LBR MUTATED	0	3	1	0
LBR WILD-TYPE	19	50	29	24

'LBR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S6200. Gene #655: 'LBR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
LBR MUTATED	3	0	1	0
LBR WILD-TYPE	32	30	33	26

'LBR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 1

Table S6201. Gene #655: 'LBR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
LBR MUTATED	0	1	0	2	1
LBR WILD-TYPE	29	17	13	7	12

'LBR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S6202. Gene #655: 'LBR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
LBR MUTATED	1	1	0	1	1
LBR WILD-TYPE	31	17	12	9	9

'LBR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S6203. Gene #655: 'LBR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
LBR MUTATED	0	1	1	2	0
LBR WILD-TYPE	26	19	27	23	20

'LBR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 1

Table S6204. Gene #655: 'LBR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
LBR MUTATED	4	0	0
LBR WILD-TYPE	44	53	18

'LBR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S6205. Gene #655: 'LBR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
LBR MUTATED	1	0	1	2	0
LBR WILD-TYPE	36	31	16	19	13

'LBR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S6206. Gene #655: 'LBR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
LBR MUTATED	4	0	0
LBR WILD-TYPE	67	27	21

'LBR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S6207. Gene #655: 'LBR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
LBR MUTATED	1	0	1	0	2	0	0
LBR WILD-TYPE	17	8	9	8	34	25	12

'LBR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 1

Table S6208. Gene #655: 'LBR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
LBR MUTATED	0	1	0	3	0	0
LBR WILD-TYPE	17	31	13	29	16	7

'AKD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S6209. Gene #656: 'AKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
AKD1 MUTATED	0	1	2	0
AKD1 WILD-TYPE	19	52	28	24

'AKD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6210. Gene #656: 'AKD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
AKD1 MUTATED	1	1	1	0
AKD1 WILD-TYPE	34	29	33	26

'AKD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S6211. Gene #656: 'AKD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
AKD1 MUTATED	0	1	0	1	1
AKD1 WILD-TYPE	29	17	13	8	12

'AKD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S6212. Gene #656: 'AKD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
AKD1 MUTATED	1	1	1	0	0
AKD1 WILD-TYPE	31	17	11	10	10

'AKD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 1

Table S6213. Gene #656: 'AKD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
AKD1 MUTATED	0	0	1	2	0
AKD1 WILD-TYPE	26	20	27	23	20

'AKD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S6214. Gene #656: 'AKD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
AKD1 MUTATED	2	1	0
AKD1 WILD-TYPE	46	52	18

'AKD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S6215. Gene #656: 'AKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
AKD1 MUTATED	0	2	0	1	0
AKD1 WILD-TYPE	37	29	17	20	13

'AKD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6216. Gene #656: 'AKD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
AKD1 MUTATED	2	1	0
AKD1 WILD-TYPE	69	26	21

'AKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S6217. Gene #656: 'AKD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
AKD1 MUTATED	0	0	1	0	0	2	0
AKD1 WILD-TYPE	18	8	9	8	36	23	12

'AKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S6218. Gene #656: 'AKD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
AKD1 MUTATED	0	1	0	2	0	0
AKD1 WILD-TYPE	17	31	13	30	16	7

'GABRD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 1

Table S6219. Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
GABRD MUTATED	1	0	3	0
GABRD WILD-TYPE	18	53	27	24

Figure S266. Get High-res Image Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GABRD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S6220. Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
GABRD MUTATED	2	0	1	1
GABRD WILD-TYPE	33	30	33	25

'GABRD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S6221. Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	29	18	13	9	13
GABRD MUTATED	0	1	0	1	1
GABRD WILD-TYPE	29	17	13	8	12

'GABRD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S6222. Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	32	18	12	10	10
GABRD MUTATED	2	0	0	0	1
GABRD WILD-TYPE	30	18	12	10	9

'GABRD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S6223. Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
GABRD MUTATED	2	0	0	1	1
GABRD WILD-TYPE	24	20	28	24	19

'GABRD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S6224. Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
GABRD MUTATED	1	2	1
GABRD WILD-TYPE	47	51	17

'GABRD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6225. Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
GABRD MUTATED	2	1	0	1	0
GABRD WILD-TYPE	35	30	17	20	13

'GABRD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S6226. Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
GABRD MUTATED	3	0	1
GABRD WILD-TYPE	68	27	20

'GABRD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S6227. Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
GABRD MUTATED	0	1	1	0	1	1	0
GABRD WILD-TYPE	18	7	9	8	35	24	12

'GABRD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S6228. Gene #657: 'GABRD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
GABRD MUTATED	0	2	0	1	1	0
GABRD WILD-TYPE	17	30	13	31	15	7

'CEACAM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S6229. Gene #658: 'CEACAM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	19	53	30	24
CEACAM5 MUTATED	0	1	2	1
CEACAM5 WILD-TYPE	19	52	28	23

'CEACAM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S6230. Gene #658: 'CEACAM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4
ALL	35	30	34	26
CEACAM5 MUTATED	2	1	1	0
CEACAM5 WILD-TYPE	33	29	33	26

'CEACAM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S6231. Gene #658: 'CEACAM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	26	20	28	25	20
CEACAM5 MUTATED	1	2	0	1	0
CEACAM5 WILD-TYPE	25	18	28	24	20

'CEACAM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S6232. Gene #658: 'CEACAM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	48	53	18
CEACAM5 MUTATED	1	2	1
CEACAM5 WILD-TYPE	47	51	17

'CEACAM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S6233. Gene #658: 'CEACAM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5
ALL	37	31	17	21	13
CEACAM5 MUTATED	2	0	0	2	0
CEACAM5 WILD-TYPE	35	31	17	19	13

'CEACAM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S6234. Gene #658: 'CEACAM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3
ALL	71	27	21
CEACAM5 MUTATED	3	0	1
CEACAM5 WILD-TYPE	68	27	20

'CEACAM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 1

Table S6235. Gene #658: 'CEACAM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6	CLUS_7
ALL	18	8	10	8	36	25	12
CEACAM5 MUTATED	0	0	1	0	1	1	1
CEACAM5 WILD-TYPE	18	8	9	8	35	24	11

'CEACAM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S6236. Gene #658: 'CEACAM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients	CLUS_1	CLUS_2	CLUS_3	CLUS_4	CLUS_5	CLUS_6
ALL	17	32	13	32	16	7
CEACAM5 MUTATED	1	1	0	1	0	1
CEACAM5 WILD-TYPE	16	31	13	31	16	6