This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 70 arm-level events and 10 molecular subtypes across 162 patients, 128 significant findings detected with P value < 0.05 and Q value < 0.25.
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1q gain cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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2p gain cnv correlated to 'METHLYATION_CNMF'.
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4q gain cnv correlated to 'CN_CNMF'.
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5q gain cnv correlated to 'METHLYATION_CNMF'.
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7q gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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8p gain cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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11p gain cnv correlated to 'CN_CNMF'.
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12p gain cnv correlated to 'METHLYATION_CNMF', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q gain cnv correlated to 'MIRSEQ_CNMF'.
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13q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18q gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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19q gain cnv correlated to 'METHLYATION_CNMF'.
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20q gain cnv correlated to 'MIRSEQ_CNMF'.
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22q gain cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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xp gain cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq gain cnv correlated to 'MIRSEQ_MATURE_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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1q loss cnv correlated to 'RPPA_CHIERARCHICAL'.
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2p loss cnv correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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3q loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p loss cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4q loss cnv correlated to 'MRNASEQ_CNMF'.
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5p loss cnv correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7q loss cnv correlated to 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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9p loss cnv correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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11q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12p loss cnv correlated to 'CN_CNMF'.
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14q loss cnv correlated to 'MIRSEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL'.
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17p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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18p loss cnv correlated to 'CN_CNMF'.
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19q loss cnv correlated to 'MIRSEQ_MATURE_CNMF'.
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21q loss cnv correlated to 'METHLYATION_CNMF'.
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22q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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xp loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
1p loss | 97 (60%) | 65 |
2e-05 (0.0014) |
0.00372 (0.0476) |
0.122 (0.424) |
5e-05 (0.00219) |
0.00717 (0.0797) |
0.00378 (0.0476) |
0.00028 (0.00891) |
0.0255 (0.184) |
0.00064 (0.0125) |
0.00282 (0.038) |
6q loss | 18 (11%) | 144 |
0.00041 (0.0106) |
0.00043 (0.0107) |
0.0398 (0.223) |
0.216 (0.555) |
0.00154 (0.0234) |
7e-05 (0.00258) |
0.00049 (0.0114) |
4e-05 (0.00219) |
0.062 (0.303) |
0.00121 (0.0192) |
11p loss | 54 (33%) | 108 |
0.0217 (0.164) |
0.00033 (0.00962) |
0.0538 (0.283) |
0.141 (0.455) |
0.00065 (0.0125) |
1e-05 (0.001) |
5e-05 (0.00219) |
1e-05 (0.001) |
0.00022 (0.00733) |
1e-05 (0.001) |
11q loss | 40 (25%) | 122 |
2e-05 (0.0014) |
0.0297 (0.192) |
0.155 (0.467) |
0.115 (0.417) |
0.00064 (0.0125) |
0.00082 (0.014) |
5e-05 (0.00219) |
0.00036 (0.00996) |
0.00037 (0.00996) |
3e-05 (0.00191) |
xp loss | 48 (30%) | 114 |
0.00017 (0.00595) |
6e-05 (0.00233) |
0.0363 (0.217) |
0.441 (0.756) |
0.0148 (0.13) |
0.00108 (0.0176) |
0.0007 (0.0129) |
0.0177 (0.147) |
0.276 (0.629) |
0.00839 (0.089) |
xq loss | 49 (30%) | 113 |
6e-05 (0.00233) |
5e-05 (0.00219) |
0.0239 (0.176) |
0.611 (0.855) |
0.00932 (0.0945) |
0.00058 (0.0125) |
0.00125 (0.0194) |
0.0103 (0.103) |
0.36 (0.69) |
0.00415 (0.051) |
3p loss | 60 (37%) | 102 |
0.0137 (0.128) |
0.156 (0.467) |
0.224 (0.567) |
0.547 (0.822) |
0.0003 (0.00913) |
1e-05 (0.001) |
0.00055 (0.0124) |
0.00381 (0.0476) |
0.00079 (0.0138) |
2e-05 (0.0014) |
3q loss | 87 (54%) | 75 |
1e-05 (0.001) |
0.979 (1.00) |
0.0677 (0.312) |
0.0257 (0.184) |
0.055 (0.283) |
1e-05 (0.001) |
0.00077 (0.0138) |
0.043 (0.237) |
0.0038 (0.0476) |
0.00049 (0.0114) |
17p loss | 62 (38%) | 100 |
0.00091 (0.0152) |
0.00226 (0.0316) |
0.36 (0.69) |
0.146 (0.458) |
0.0268 (0.187) |
0.0199 (0.157) |
0.0255 (0.184) |
0.0184 (0.148) |
0.124 (0.428) |
0.0351 (0.216) |
13q gain | 9 (6%) | 153 |
0.038 (0.22) |
0.0563 (0.283) |
0.305 (0.653) |
0.623 (0.864) |
0.00885 (0.0925) |
0.00911 (0.0938) |
0.0212 (0.163) |
0.0545 (0.283) |
0.0077 (0.0841) |
0.00474 (0.0562) |
22q loss | 58 (36%) | 104 |
1e-05 (0.001) |
0.0207 (0.161) |
0.554 (0.822) |
0.0846 (0.355) |
0.0179 (0.147) |
0.0022 (0.0314) |
0.0319 (0.205) |
0.052 (0.278) |
0.0342 (0.213) |
0.101 (0.393) |
12p gain | 11 (7%) | 151 |
0.236 (0.579) |
0.00513 (0.0589) |
0.476 (0.778) |
0.118 (0.417) |
0.61 (0.855) |
0.322 (0.665) |
0.014 (0.128) |
0.212 (0.546) |
0.0118 (0.113) |
0.0278 (0.191) |
8p gain | 9 (6%) | 153 |
0.155 (0.467) |
0.238 (0.581) |
0.4 (0.722) |
1 (1.00) |
0.0635 (0.305) |
0.0132 (0.125) |
0.0292 (0.192) |
0.0385 (0.22) |
0.417 (0.733) |
0.0925 (0.376) |
xp gain | 6 (4%) | 156 |
0.163 (0.473) |
0.101 (0.393) |
0.337 (0.673) |
0.0155 (0.133) |
0.175 (0.497) |
0.07 (0.316) |
0.0289 (0.192) |
0.0145 (0.128) |
||
2p loss | 10 (6%) | 152 |
0.15 (0.463) |
0.067 (0.312) |
0.755 (0.937) |
0.428 (0.743) |
0.00489 (0.057) |
0.181 (0.504) |
0.291 (0.64) |
0.00065 (0.0125) |
0.293 (0.64) |
0.0115 (0.112) |
4p loss | 11 (7%) | 151 |
0.00462 (0.0558) |
0.146 (0.458) |
0.609 (0.855) |
0.35 (0.683) |
0.00781 (0.0841) |
0.182 (0.504) |
0.277 (0.629) |
0.393 (0.718) |
0.071 (0.316) |
0.0294 (0.192) |
7q loss | 7 (4%) | 155 |
0.405 (0.725) |
0.318 (0.664) |
0.192 (0.518) |
0.113 (0.417) |
0.0223 (0.166) |
0.101 (0.393) |
0.0284 (0.192) |
0.0115 (0.112) |
0.243 (0.584) |
0.159 (0.468) |
1q gain | 19 (12%) | 143 |
0.0153 (0.132) |
0.038 (0.22) |
0.766 (0.937) |
1 (1.00) |
0.477 (0.778) |
0.422 (0.738) |
0.644 (0.872) |
0.682 (0.897) |
0.504 (0.797) |
0.578 (0.842) |
xq gain | 5 (3%) | 157 |
0.292 (0.64) |
0.253 (0.596) |
0.545 (0.822) |
0.0554 (0.283) |
0.186 (0.511) |
0.0681 (0.312) |
0.0215 (0.163) |
0.00249 (0.0342) |
||
5p loss | 5 (3%) | 157 |
0.728 (0.927) |
0.446 (0.759) |
0.036 (0.217) |
0.0361 (0.217) |
0.184 (0.508) |
0.166 (0.479) |
0.245 (0.585) |
0.0914 (0.374) |
||
9p loss | 11 (7%) | 151 |
0.177 (0.503) |
0.4 (0.722) |
0.0143 (0.128) |
0.0181 (0.147) |
0.193 (0.519) |
0.179 (0.503) |
0.627 (0.864) |
0.0678 (0.312) |
0.263 (0.611) |
0.0744 (0.324) |
14q loss | 20 (12%) | 142 |
0.727 (0.927) |
0.248 (0.586) |
0.241 (0.582) |
0.203 (0.537) |
0.32 (0.665) |
0.793 (0.938) |
0.28 (0.635) |
0.00162 (0.0241) |
0.0626 (0.303) |
0.00066 (0.0125) |
2p gain | 6 (4%) | 156 |
0.309 (0.657) |
0.00604 (0.0682) |
0.0885 (0.366) |
1 (1.00) |
0.237 (0.579) |
0.345 (0.68) |
0.106 (0.405) |
0.337 (0.673) |
0.108 (0.411) |
0.195 (0.522) |
4q gain | 3 (2%) | 159 |
0.014 (0.128) |
0.801 (0.94) |
0.467 (0.778) |
0.742 (0.937) |
0.628 (0.864) |
0.837 (0.962) |
0.78 (0.937) |
0.899 (1.00) |
||
5q gain | 7 (4%) | 155 |
0.969 (1.00) |
0.002 (0.0292) |
0.0713 (0.316) |
0.297 (0.645) |
0.555 (0.822) |
0.382 (0.707) |
1 (1.00) |
0.476 (0.778) |
||
7q gain | 21 (13%) | 141 |
0.265 (0.611) |
0.0555 (0.283) |
0.909 (1.00) |
0.0442 (0.242) |
0.135 (0.446) |
0.158 (0.468) |
0.0795 (0.337) |
0.179 (0.503) |
0.502 (0.796) |
0.385 (0.711) |
11p gain | 5 (3%) | 157 |
0.0384 (0.22) |
0.516 (0.803) |
0.548 (0.822) |
1 (1.00) |
0.509 (0.797) |
0.302 (0.648) |
0.527 (0.807) |
0.495 (0.788) |
0.0594 (0.293) |
0.335 (0.673) |
12q gain | 14 (9%) | 148 |
0.153 (0.467) |
0.135 (0.446) |
0.841 (0.964) |
0.494 (0.788) |
0.667 (0.884) |
0.656 (0.88) |
0.0338 (0.213) |
0.292 (0.64) |
0.0549 (0.283) |
0.163 (0.473) |
18q gain | 10 (6%) | 152 |
0.366 (0.692) |
0.915 (1.00) |
0.476 (0.778) |
0.0386 (0.22) |
0.374 (0.698) |
0.536 (0.817) |
0.779 (0.937) |
0.435 (0.751) |
0.126 (0.431) |
0.719 (0.924) |
19q gain | 14 (9%) | 148 |
0.0667 (0.312) |
0.0338 (0.213) |
0.0877 (0.365) |
0.541 (0.822) |
0.547 (0.822) |
0.226 (0.567) |
0.599 (0.848) |
0.664 (0.883) |
0.583 (0.844) |
0.189 (0.514) |
20q gain | 10 (6%) | 152 |
0.712 (0.918) |
0.492 (0.788) |
0.155 (0.467) |
1 (1.00) |
0.109 (0.414) |
0.0627 (0.303) |
0.0344 (0.213) |
0.0768 (0.33) |
0.0784 (0.335) |
0.228 (0.567) |
22q gain | 3 (2%) | 159 |
0.62 (0.863) |
0.144 (0.455) |
0.231 (0.571) |
0.148 (0.462) |
0.114 (0.417) |
0.409 (0.726) |
0.0392 (0.221) |
0.494 (0.788) |
||
1q loss | 25 (15%) | 137 |
0.393 (0.718) |
0.591 (0.845) |
1 (1.00) |
0.043 (0.237) |
0.128 (0.437) |
0.578 (0.842) |
0.476 (0.778) |
0.195 (0.522) |
0.159 (0.468) |
0.523 (0.805) |
4q loss | 10 (6%) | 152 |
0.0968 (0.388) |
0.246 (0.585) |
0.612 (0.856) |
0.35 (0.683) |
0.0195 (0.155) |
0.339 (0.673) |
0.321 (0.665) |
0.525 (0.806) |
0.288 (0.64) |
0.0896 (0.369) |
12p loss | 3 (2%) | 159 |
0.0278 (0.191) |
0.335 (0.673) |
0.368 (0.692) |
0.787 (0.937) |
0.642 (0.872) |
0.291 (0.64) |
0.784 (0.937) |
1 (1.00) |
0.047 (0.255) |
0.651 (0.876) |
16q loss | 5 (3%) | 157 |
0.907 (1.00) |
1 (1.00) |
0.697 (0.904) |
0.786 (0.937) |
0.41 (0.727) |
0.0268 (0.187) |
0.264 (0.611) |
0.591 (0.845) |
0.329 (0.671) |
0.647 (0.872) |
18p loss | 16 (10%) | 146 |
0.0296 (0.192) |
0.742 (0.937) |
0.725 (0.927) |
0.209 (0.546) |
0.829 (0.958) |
0.754 (0.937) |
0.799 (0.94) |
0.314 (0.661) |
0.483 (0.785) |
0.552 (0.822) |
19q loss | 5 (3%) | 157 |
0.791 (0.938) |
0.847 (0.969) |
1 (1.00) |
1 (1.00) |
0.313 (0.661) |
0.772 (0.937) |
0.0381 (0.22) |
0.893 (1.00) |
||
21q loss | 36 (22%) | 126 |
0.17 (0.487) |
0.0178 (0.147) |
0.945 (1.00) |
0.455 (0.766) |
0.0488 (0.263) |
0.938 (1.00) |
0.838 (0.962) |
0.603 (0.852) |
0.918 (1.00) |
0.299 (0.646) |
1p gain | 6 (4%) | 156 |
0.64 (0.872) |
0.131 (0.445) |
0.785 (0.937) |
0.943 (1.00) |
0.332 (0.673) |
0.764 (0.937) |
0.76 (0.937) |
0.963 (1.00) |
||
4p gain | 4 (2%) | 158 |
0.255 (0.597) |
0.368 (0.692) |
0.751 (0.937) |
0.555 (0.822) |
0.458 (0.769) |
0.787 (0.937) |
0.805 (0.94) |
0.963 (1.00) |
||
5p gain | 11 (7%) | 151 |
0.869 (0.985) |
0.143 (0.455) |
0.487 (0.787) |
1 (1.00) |
0.942 (1.00) |
0.66 (0.882) |
0.924 (1.00) |
0.614 (0.856) |
0.634 (0.87) |
0.851 (0.97) |
6p gain | 14 (9%) | 148 |
0.566 (0.828) |
0.359 (0.69) |
0.156 (0.467) |
0.2 (0.532) |
0.425 (0.742) |
0.105 (0.404) |
0.172 (0.492) |
0.302 (0.648) |
0.692 (0.901) |
0.272 (0.622) |
6q gain | 8 (5%) | 154 |
0.184 (0.508) |
0.12 (0.419) |
0.887 (1.00) |
0.115 (0.417) |
0.211 (0.546) |
0.0992 (0.392) |
0.475 (0.778) |
0.562 (0.826) |
0.246 (0.585) |
0.0957 (0.387) |
7p gain | 27 (17%) | 135 |
0.413 (0.728) |
0.18 (0.504) |
0.849 (0.97) |
0.149 (0.463) |
0.141 (0.455) |
0.378 (0.703) |
0.369 (0.692) |
0.0713 (0.316) |
0.228 (0.567) |
0.0558 (0.283) |
8q gain | 13 (8%) | 149 |
0.227 (0.567) |
0.753 (0.937) |
0.593 (0.845) |
1 (1.00) |
0.104 (0.402) |
0.0758 (0.328) |
0.189 (0.514) |
0.201 (0.532) |
0.804 (0.94) |
0.428 (0.743) |
9p gain | 4 (2%) | 158 |
0.766 (0.937) |
0.69 (0.901) |
0.15 (0.463) |
0.224 (0.567) |
0.308 (0.657) |
0.255 (0.597) |
0.358 (0.69) |
0.468 (0.778) |
||
9q gain | 3 (2%) | 159 |
0.821 (0.951) |
0.444 (0.759) |
0.229 (0.568) |
0.239 (0.581) |
0.491 (0.788) |
0.343 (0.679) |
0.286 (0.64) |
0.297 (0.645) |
||
10p gain | 12 (7%) | 150 |
0.717 (0.923) |
0.0725 (0.319) |
1 (1.00) |
0.119 (0.417) |
0.854 (0.972) |
0.516 (0.803) |
1 (1.00) |
0.838 (0.962) |
0.824 (0.953) |
0.133 (0.446) |
10q gain | 10 (6%) | 152 |
0.544 (0.822) |
0.244 (0.584) |
1 (1.00) |
0.12 (0.419) |
0.578 (0.842) |
0.594 (0.845) |
0.604 (0.852) |
0.51 (0.797) |
0.789 (0.938) |
0.143 (0.455) |
14q gain | 4 (2%) | 158 |
0.553 (0.822) |
0.688 (0.901) |
1 (1.00) |
0.553 (0.822) |
0.313 (0.661) |
0.787 (0.937) |
0.806 (0.94) |
0.338 (0.673) |
||
15q gain | 14 (9%) | 148 |
0.066 (0.312) |
0.133 (0.446) |
0.663 (0.883) |
0.35 (0.683) |
0.27 (0.62) |
0.768 (0.937) |
0.314 (0.661) |
0.792 (0.938) |
0.362 (0.69) |
0.593 (0.845) |
16p gain | 6 (4%) | 156 |
0.586 (0.845) |
0.555 (0.822) |
0.785 (0.937) |
0.742 (0.937) |
0.51 (0.797) |
0.819 (0.951) |
0.468 (0.778) |
0.523 (0.805) |
||
16q gain | 6 (4%) | 156 |
0.118 (0.417) |
1 (1.00) |
0.159 (0.468) |
0.698 (0.904) |
0.669 (0.885) |
0.765 (0.937) |
0.759 (0.937) |
0.361 (0.69) |
||
17q gain | 6 (4%) | 156 |
0.635 (0.87) |
0.134 (0.446) |
0.16 (0.468) |
0.698 (0.904) |
0.33 (0.672) |
0.768 (0.937) |
0.448 (0.761) |
0.71 (0.917) |
||
18p gain | 8 (5%) | 154 |
0.136 (0.446) |
0.657 (0.88) |
0.435 (0.751) |
0.118 (0.417) |
0.519 (0.805) |
0.647 (0.872) |
0.474 (0.778) |
0.562 (0.826) |
0.0985 (0.392) |
0.751 (0.937) |
19p gain | 20 (12%) | 142 |
0.21 (0.546) |
0.14 (0.455) |
0.865 (0.981) |
0.781 (0.937) |
0.802 (0.94) |
0.645 (0.872) |
0.324 (0.667) |
0.924 (1.00) |
0.264 (0.611) |
0.411 (0.727) |
20p gain | 12 (7%) | 150 |
0.453 (0.764) |
0.742 (0.937) |
0.265 (0.611) |
0.726 (0.927) |
0.293 (0.64) |
0.341 (0.677) |
0.117 (0.417) |
0.382 (0.707) |
0.76 (0.937) |
0.692 (0.901) |
21q gain | 3 (2%) | 159 |
0.82 (0.951) |
0.143 (0.455) |
0.232 (0.572) |
0.0683 (0.312) |
0.113 (0.417) |
0.406 (0.725) |
0.287 (0.64) |
0.116 (0.417) |
||
2q loss | 13 (8%) | 149 |
0.914 (1.00) |
0.452 (0.764) |
0.682 (0.897) |
0.429 (0.744) |
0.406 (0.725) |
0.142 (0.455) |
0.761 (0.937) |
0.0971 (0.388) |
0.282 (0.636) |
0.508 (0.797) |
5q loss | 7 (4%) | 155 |
0.503 (0.796) |
0.781 (0.937) |
0.326 (0.667) |
1 (1.00) |
0.645 (0.872) |
0.524 (0.805) |
0.795 (0.939) |
0.358 (0.69) |
0.582 (0.844) |
0.59 (0.845) |
8p loss | 21 (13%) | 141 |
0.114 (0.417) |
0.597 (0.848) |
0.727 (0.927) |
0.756 (0.937) |
0.0832 (0.351) |
0.0732 (0.32) |
0.387 (0.711) |
0.814 (0.949) |
0.449 (0.761) |
0.286 (0.64) |
8q loss | 12 (7%) | 150 |
0.151 (0.465) |
0.926 (1.00) |
0.483 (0.785) |
1 (1.00) |
0.325 (0.667) |
0.622 (0.864) |
0.0569 (0.283) |
0.439 (0.756) |
0.876 (0.989) |
0.374 (0.698) |
9q loss | 12 (7%) | 150 |
0.558 (0.824) |
0.191 (0.518) |
0.241 (0.582) |
0.349 (0.683) |
0.387 (0.711) |
0.486 (0.787) |
0.751 (0.937) |
0.295 (0.642) |
0.61 (0.855) |
0.689 (0.901) |
13q loss | 8 (5%) | 154 |
0.771 (0.937) |
0.407 (0.725) |
0.774 (0.937) |
0.671 (0.887) |
0.317 (0.663) |
0.116 (0.417) |
0.666 (0.884) |
0.226 (0.567) |
0.397 (0.721) |
0.489 (0.788) |
15q loss | 3 (2%) | 159 |
0.75 (0.937) |
1 (1.00) |
1 (1.00) |
0.864 (0.981) |
0.627 (0.864) |
0.832 (0.959) |
0.563 (0.826) |
0.625 (0.864) |
||
16p loss | 9 (6%) | 153 |
0.523 (0.805) |
0.322 (0.665) |
0.477 (0.778) |
0.445 (0.759) |
0.534 (0.816) |
0.363 (0.69) |
0.226 (0.567) |
0.405 (0.725) |
0.803 (0.94) |
0.354 (0.688) |
17q loss | 15 (9%) | 147 |
0.132 (0.445) |
0.11 (0.415) |
0.205 (0.54) |
0.0687 (0.312) |
0.215 (0.553) |
0.495 (0.788) |
0.748 (0.937) |
0.365 (0.692) |
0.399 (0.722) |
0.17 (0.487) |
18q loss | 6 (4%) | 156 |
0.474 (0.778) |
0.873 (0.988) |
0.549 (0.822) |
0.057 (0.283) |
0.587 (0.845) |
0.66 (0.882) |
0.506 (0.797) |
0.584 (0.844) |
0.42 (0.737) |
0.685 (0.9) |
20q loss | 3 (2%) | 159 |
0.337 (0.673) |
1 (1.00) |
1 (1.00) |
0.641 (0.872) |
0.782 (0.937) |
1 (1.00) |
0.211 (0.546) |
0.396 (0.721) |
P value = 0.0153 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
1Q GAIN MUTATED | 10 | 1 | 0 | 6 | 2 |
1Q GAIN WILD-TYPE | 27 | 39 | 10 | 44 | 23 |
P value = 0.038 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
1Q GAIN MUTATED | 9 | 8 | 2 |
1Q GAIN WILD-TYPE | 31 | 69 | 43 |
P value = 0.00604 (Fisher's exact test), Q value = 0.068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
2P GAIN MUTATED | 5 | 1 | 0 |
2P GAIN WILD-TYPE | 35 | 76 | 45 |
P value = 0.014 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
4Q GAIN MUTATED | 0 | 0 | 0 | 0 | 3 |
4Q GAIN WILD-TYPE | 37 | 40 | 10 | 50 | 22 |
P value = 0.002 (Fisher's exact test), Q value = 0.029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
5Q GAIN MUTATED | 1 | 0 | 6 |
5Q GAIN WILD-TYPE | 39 | 77 | 39 |
P value = 0.0442 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
7Q GAIN MUTATED | 1 | 2 | 7 |
7Q GAIN WILD-TYPE | 30 | 16 | 21 |
P value = 0.0132 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
8P GAIN MUTATED | 3 | 0 | 3 | 3 |
8P GAIN WILD-TYPE | 31 | 64 | 40 | 18 |
P value = 0.0292 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
8P GAIN MUTATED | 4 | 5 | 0 |
8P GAIN WILD-TYPE | 59 | 39 | 55 |
P value = 0.0385 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
8P GAIN MUTATED | 4 | 0 | 2 | 3 |
8P GAIN WILD-TYPE | 62 | 54 | 16 | 21 |
P value = 0.0384 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
11P GAIN MUTATED | 1 | 0 | 2 | 2 | 0 |
11P GAIN WILD-TYPE | 36 | 40 | 8 | 48 | 25 |
P value = 0.00513 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
12P GAIN MUTATED | 3 | 1 | 7 |
12P GAIN WILD-TYPE | 37 | 76 | 38 |
P value = 0.014 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
12P GAIN MUTATED | 9 | 1 | 1 |
12P GAIN WILD-TYPE | 54 | 43 | 54 |
P value = 0.0118 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
12P GAIN MUTATED | 2 | 2 | 0 | 7 | 0 |
12P GAIN WILD-TYPE | 31 | 48 | 16 | 26 | 29 |
P value = 0.0278 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
12P GAIN MUTATED | 3 | 1 | 1 | 0 | 5 | 0 | 1 |
12P GAIN WILD-TYPE | 15 | 40 | 26 | 15 | 18 | 18 | 18 |
P value = 0.0338 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
12Q GAIN MUTATED | 10 | 1 | 3 |
12Q GAIN WILD-TYPE | 53 | 43 | 52 |
P value = 0.038 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
13Q GAIN MUTATED | 0 | 6 | 0 | 3 | 0 |
13Q GAIN WILD-TYPE | 37 | 34 | 10 | 47 | 25 |
P value = 0.00885 (Fisher's exact test), Q value = 0.092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
13Q GAIN MUTATED | 2 | 0 | 6 | 1 |
13Q GAIN WILD-TYPE | 30 | 65 | 38 | 20 |
P value = 0.00911 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
13Q GAIN MUTATED | 2 | 0 | 6 | 1 |
13Q GAIN WILD-TYPE | 32 | 64 | 37 | 20 |
P value = 0.0212 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
13Q GAIN MUTATED | 7 | 2 | 0 |
13Q GAIN WILD-TYPE | 56 | 42 | 55 |
P value = 0.0077 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
13Q GAIN MUTATED | 2 | 0 | 0 | 6 | 1 |
13Q GAIN WILD-TYPE | 31 | 50 | 16 | 27 | 28 |
P value = 0.00474 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
13Q GAIN MUTATED | 2 | 0 | 0 | 0 | 5 | 1 | 1 |
13Q GAIN WILD-TYPE | 16 | 41 | 27 | 15 | 18 | 17 | 18 |
P value = 0.0386 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
18Q GAIN MUTATED | 0 | 3 | 2 |
18Q GAIN WILD-TYPE | 31 | 15 | 26 |
P value = 0.0338 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
19Q GAIN MUTATED | 3 | 3 | 8 |
19Q GAIN WILD-TYPE | 37 | 74 | 37 |
P value = 0.0344 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
20Q GAIN MUTATED | 8 | 1 | 1 |
20Q GAIN WILD-TYPE | 55 | 43 | 54 |
P value = 0.0392 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
22Q GAIN MUTATED | 0 | 0 | 0 | 3 | 0 |
22Q GAIN WILD-TYPE | 33 | 50 | 16 | 30 | 29 |
P value = 0.0155 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
XP GAIN MUTATED | 4 | 0 | 1 | 1 |
XP GAIN WILD-TYPE | 30 | 64 | 42 | 20 |
P value = 0.0289 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
XP GAIN MUTATED | 4 | 0 | 1 | 1 | 0 |
XP GAIN WILD-TYPE | 29 | 50 | 15 | 32 | 29 |
P value = 0.0145 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
XP GAIN MUTATED | 3 | 0 | 1 | 0 | 0 | 2 | 0 |
XP GAIN WILD-TYPE | 15 | 41 | 26 | 15 | 23 | 16 | 19 |
P value = 0.0215 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
XQ GAIN MUTATED | 4 | 0 | 0 | 1 | 0 |
XQ GAIN WILD-TYPE | 29 | 50 | 16 | 32 | 29 |
P value = 0.00249 (Fisher's exact test), Q value = 0.034
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
XQ GAIN MUTATED | 3 | 0 | 0 | 0 | 0 | 2 | 0 |
XQ GAIN WILD-TYPE | 15 | 41 | 27 | 15 | 23 | 16 | 19 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
1P LOSS MUTATED | 27 | 12 | 6 | 30 | 22 |
1P LOSS WILD-TYPE | 10 | 28 | 4 | 20 | 3 |
P value = 0.00372 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
1P LOSS MUTATED | 17 | 56 | 24 |
1P LOSS WILD-TYPE | 23 | 21 | 21 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
1P LOSS MUTATED | 10 | 17 | 16 |
1P LOSS WILD-TYPE | 21 | 1 | 12 |
P value = 0.00717 (Fisher's exact test), Q value = 0.08
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
1P LOSS MUTATED | 20 | 48 | 19 | 10 |
1P LOSS WILD-TYPE | 12 | 17 | 25 | 11 |
P value = 0.00378 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
1P LOSS MUTATED | 15 | 49 | 23 | 10 |
1P LOSS WILD-TYPE | 19 | 15 | 20 | 11 |
P value = 0.00028 (Fisher's exact test), Q value = 0.0089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
1P LOSS MUTATED | 28 | 25 | 44 |
1P LOSS WILD-TYPE | 35 | 19 | 11 |
P value = 0.0255 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
1P LOSS MUTATED | 31 | 40 | 11 | 15 |
1P LOSS WILD-TYPE | 35 | 14 | 7 | 9 |
P value = 0.00064 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
1P LOSS MUTATED | 16 | 41 | 11 | 13 | 16 |
1P LOSS WILD-TYPE | 17 | 9 | 5 | 20 | 13 |
P value = 0.00282 (Fisher's exact test), Q value = 0.038
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
1P LOSS MUTATED | 7 | 33 | 16 | 12 | 8 | 11 | 10 |
1P LOSS WILD-TYPE | 11 | 8 | 11 | 3 | 15 | 7 | 9 |
P value = 0.043 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
1Q LOSS MUTATED | 1 | 2 | 7 |
1Q LOSS WILD-TYPE | 30 | 16 | 21 |
P value = 0.00489 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
2P LOSS MUTATED | 0 | 1 | 7 | 2 |
2P LOSS WILD-TYPE | 32 | 64 | 37 | 19 |
P value = 0.00065 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
2P LOSS MUTATED | 3 | 0 | 5 | 2 |
2P LOSS WILD-TYPE | 63 | 54 | 13 | 22 |
P value = 0.0115 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
2P LOSS MUTATED | 1 | 1 | 0 | 0 | 2 | 5 | 1 |
2P LOSS WILD-TYPE | 17 | 40 | 27 | 15 | 21 | 13 | 18 |
P value = 0.0137 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
3P LOSS MUTATED | 11 | 13 | 1 | 28 | 7 |
3P LOSS WILD-TYPE | 26 | 27 | 9 | 22 | 18 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
3P LOSS MUTATED | 16 | 16 | 25 | 3 |
3P LOSS WILD-TYPE | 16 | 49 | 19 | 18 |
P value = 1e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
3P LOSS MUTATED | 9 | 18 | 30 | 3 |
3P LOSS WILD-TYPE | 25 | 46 | 13 | 18 |
P value = 0.00055 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
3P LOSS MUTATED | 34 | 8 | 18 |
3P LOSS WILD-TYPE | 29 | 36 | 37 |
P value = 0.00381 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
3P LOSS MUTATED | 35 | 16 | 5 | 4 |
3P LOSS WILD-TYPE | 31 | 38 | 13 | 20 |
P value = 0.00079 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
3P LOSS MUTATED | 10 | 16 | 3 | 23 | 8 |
3P LOSS WILD-TYPE | 23 | 34 | 13 | 10 | 21 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
3P LOSS MUTATED | 4 | 15 | 13 | 1 | 19 | 5 | 3 |
3P LOSS WILD-TYPE | 14 | 26 | 14 | 14 | 4 | 13 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
3Q LOSS MUTATED | 9 | 12 | 6 | 40 | 20 |
3Q LOSS WILD-TYPE | 28 | 28 | 4 | 10 | 5 |
P value = 0.0257 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
3Q LOSS MUTATED | 11 | 13 | 17 |
3Q LOSS WILD-TYPE | 20 | 5 | 11 |
P value = 1e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
3Q LOSS MUTATED | 6 | 41 | 33 | 7 |
3Q LOSS WILD-TYPE | 28 | 23 | 10 | 14 |
P value = 0.00077 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
3Q LOSS MUTATED | 38 | 13 | 36 |
3Q LOSS WILD-TYPE | 25 | 31 | 19 |
P value = 0.043 (Fisher's exact test), Q value = 0.24
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
3Q LOSS MUTATED | 39 | 33 | 5 | 10 |
3Q LOSS WILD-TYPE | 27 | 21 | 13 | 14 |
P value = 0.0038 (Fisher's exact test), Q value = 0.048
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
3Q LOSS MUTATED | 10 | 33 | 6 | 23 | 15 |
3Q LOSS WILD-TYPE | 23 | 17 | 10 | 10 | 14 |
P value = 0.00049 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
3Q LOSS MUTATED | 5 | 28 | 16 | 7 | 19 | 5 | 7 |
3Q LOSS WILD-TYPE | 13 | 13 | 11 | 8 | 4 | 13 | 12 |
P value = 0.00462 (Fisher's exact test), Q value = 0.056
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
4P LOSS MUTATED | 0 | 8 | 0 | 3 | 0 |
4P LOSS WILD-TYPE | 37 | 32 | 10 | 47 | 25 |
P value = 0.00781 (Fisher's exact test), Q value = 0.084
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
4P LOSS MUTATED | 0 | 3 | 8 | 0 |
4P LOSS WILD-TYPE | 32 | 62 | 36 | 21 |
P value = 0.0294 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
4P LOSS MUTATED | 0 | 2 | 1 | 1 | 6 | 1 | 0 |
4P LOSS WILD-TYPE | 18 | 39 | 26 | 14 | 17 | 17 | 19 |
P value = 0.0195 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
4Q LOSS MUTATED | 0 | 3 | 7 | 0 |
4Q LOSS WILD-TYPE | 32 | 62 | 37 | 21 |
P value = 0.036 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
5P LOSS MUTATED | 1 | 0 | 4 | 0 |
5P LOSS WILD-TYPE | 31 | 65 | 40 | 21 |
P value = 0.0361 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
5P LOSS MUTATED | 1 | 0 | 4 | 0 |
5P LOSS WILD-TYPE | 33 | 64 | 39 | 21 |
P value = 0.00041 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
6Q LOSS MUTATED | 1 | 0 | 3 | 11 | 3 |
6Q LOSS WILD-TYPE | 36 | 40 | 7 | 39 | 22 |
P value = 0.00043 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
6Q LOSS MUTATED | 0 | 16 | 2 |
6Q LOSS WILD-TYPE | 40 | 61 | 43 |
P value = 0.0398 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 23 | 18 |
6Q LOSS MUTATED | 2 | 2 | 7 | 0 |
6Q LOSS WILD-TYPE | 14 | 18 | 16 | 18 |
P value = 0.00154 (Fisher's exact test), Q value = 0.023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
6Q LOSS MUTATED | 1 | 15 | 1 | 1 |
6Q LOSS WILD-TYPE | 31 | 50 | 43 | 20 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
6Q LOSS MUTATED | 0 | 16 | 1 | 1 |
6Q LOSS WILD-TYPE | 34 | 48 | 42 | 20 |
P value = 0.00049 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
6Q LOSS MUTATED | 1 | 4 | 13 |
6Q LOSS WILD-TYPE | 62 | 40 | 42 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
6Q LOSS MUTATED | 1 | 15 | 1 | 1 |
6Q LOSS WILD-TYPE | 65 | 39 | 17 | 23 |
P value = 0.00121 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
6Q LOSS MUTATED | 0 | 11 | 0 | 4 | 1 | 1 | 1 |
6Q LOSS WILD-TYPE | 18 | 30 | 27 | 11 | 22 | 17 | 18 |
P value = 0.0223 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
7Q LOSS MUTATED | 0 | 7 | 0 | 0 |
7Q LOSS WILD-TYPE | 32 | 58 | 44 | 21 |
P value = 0.0284 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
7Q LOSS MUTATED | 0 | 2 | 5 |
7Q LOSS WILD-TYPE | 63 | 42 | 50 |
P value = 0.0115 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
7Q LOSS MUTATED | 0 | 5 | 2 | 0 |
7Q LOSS WILD-TYPE | 66 | 49 | 16 | 24 |
P value = 0.0143 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 23 | 18 |
9P LOSS MUTATED | 0 | 0 | 4 | 0 |
9P LOSS WILD-TYPE | 16 | 20 | 19 | 18 |
P value = 0.0181 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 31 | 18 | 28 |
9P LOSS MUTATED | 0 | 0 | 4 |
9P LOSS WILD-TYPE | 31 | 18 | 24 |
P value = 0.0217 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
11P LOSS MUTATED | 10 | 20 | 0 | 15 | 9 |
11P LOSS WILD-TYPE | 27 | 20 | 10 | 35 | 16 |
P value = 0.00033 (Fisher's exact test), Q value = 0.0096
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
11P LOSS MUTATED | 20 | 14 | 20 |
11P LOSS WILD-TYPE | 20 | 63 | 25 |
P value = 0.00065 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
11P LOSS MUTATED | 11 | 12 | 25 | 6 |
11P LOSS WILD-TYPE | 21 | 53 | 19 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
11P LOSS MUTATED | 11 | 9 | 28 | 6 |
11P LOSS WILD-TYPE | 23 | 55 | 15 | 15 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
11P LOSS MUTATED | 34 | 11 | 9 |
11P LOSS WILD-TYPE | 29 | 33 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
11P LOSS MUTATED | 37 | 6 | 5 | 6 |
11P LOSS WILD-TYPE | 29 | 48 | 13 | 18 |
P value = 0.00022 (Fisher's exact test), Q value = 0.0073
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
11P LOSS MUTATED | 11 | 6 | 4 | 19 | 13 |
11P LOSS WILD-TYPE | 22 | 44 | 12 | 14 | 16 |
P value = 1e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
11P LOSS MUTATED | 9 | 5 | 9 | 2 | 18 | 5 | 5 |
11P LOSS WILD-TYPE | 9 | 36 | 18 | 13 | 5 | 13 | 14 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
11Q LOSS MUTATED | 6 | 19 | 0 | 15 | 0 |
11Q LOSS WILD-TYPE | 31 | 21 | 10 | 35 | 25 |
P value = 0.0297 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
11Q LOSS MUTATED | 14 | 12 | 14 |
11Q LOSS WILD-TYPE | 26 | 65 | 31 |
P value = 0.00064 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
11Q LOSS MUTATED | 7 | 8 | 21 | 4 |
11Q LOSS WILD-TYPE | 25 | 57 | 23 | 17 |
P value = 0.00082 (Fisher's exact test), Q value = 0.014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
11Q LOSS MUTATED | 9 | 8 | 20 | 3 |
11Q LOSS WILD-TYPE | 25 | 56 | 23 | 18 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
11Q LOSS MUTATED | 26 | 10 | 4 |
11Q LOSS WILD-TYPE | 37 | 34 | 51 |
P value = 0.00036 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
11Q LOSS MUTATED | 27 | 5 | 2 | 6 |
11Q LOSS WILD-TYPE | 39 | 49 | 16 | 18 |
P value = 0.00037 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
11Q LOSS MUTATED | 8 | 4 | 3 | 17 | 8 |
11Q LOSS WILD-TYPE | 25 | 46 | 13 | 16 | 21 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
11Q LOSS MUTATED | 7 | 5 | 6 | 1 | 15 | 2 | 4 |
11Q LOSS WILD-TYPE | 11 | 36 | 21 | 14 | 8 | 16 | 15 |
P value = 0.0278 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
12P LOSS MUTATED | 2 | 0 | 1 | 0 | 0 |
12P LOSS WILD-TYPE | 35 | 40 | 9 | 50 | 25 |
P value = 0.00162 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
14Q LOSS MUTATED | 5 | 5 | 8 | 2 |
14Q LOSS WILD-TYPE | 61 | 49 | 10 | 22 |
P value = 0.00066 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
14Q LOSS MUTATED | 1 | 6 | 0 | 0 | 4 | 8 | 1 |
14Q LOSS WILD-TYPE | 17 | 35 | 27 | 15 | 19 | 10 | 18 |
P value = 0.0268 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
16Q LOSS MUTATED | 4 | 1 | 0 | 0 |
16Q LOSS WILD-TYPE | 30 | 63 | 43 | 21 |
P value = 0.00091 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
17P LOSS MUTATED | 12 | 12 | 8 | 26 | 4 |
17P LOSS WILD-TYPE | 25 | 28 | 2 | 24 | 21 |
P value = 0.00226 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
17P LOSS MUTATED | 9 | 40 | 13 |
17P LOSS WILD-TYPE | 31 | 37 | 32 |
P value = 0.0268 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
17P LOSS MUTATED | 9 | 34 | 14 | 5 |
17P LOSS WILD-TYPE | 23 | 31 | 30 | 16 |
P value = 0.0199 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
17P LOSS MUTATED | 10 | 34 | 13 | 5 |
17P LOSS WILD-TYPE | 24 | 30 | 30 | 16 |
P value = 0.0255 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
17P LOSS MUTATED | 20 | 13 | 29 |
17P LOSS WILD-TYPE | 43 | 31 | 26 |
P value = 0.0184 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
17P LOSS MUTATED | 18 | 29 | 8 | 7 |
17P LOSS WILD-TYPE | 48 | 25 | 10 | 17 |
P value = 0.0351 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
17P LOSS MUTATED | 8 | 20 | 4 | 9 | 8 | 8 | 5 |
17P LOSS WILD-TYPE | 10 | 21 | 23 | 6 | 15 | 10 | 14 |
P value = 0.0296 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
18P LOSS MUTATED | 0 | 5 | 3 | 5 | 3 |
18P LOSS WILD-TYPE | 37 | 35 | 7 | 45 | 22 |
P value = 0.0381 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
19Q LOSS MUTATED | 1 | 0 | 1 | 0 | 3 |
19Q LOSS WILD-TYPE | 32 | 50 | 15 | 33 | 26 |
P value = 0.0178 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
21Q LOSS MUTATED | 3 | 19 | 14 |
21Q LOSS WILD-TYPE | 37 | 58 | 31 |
P value = 1e-05 (Fisher's exact test), Q value = 0.001
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
22Q LOSS MUTATED | 15 | 4 | 9 | 27 | 3 |
22Q LOSS WILD-TYPE | 22 | 36 | 1 | 23 | 22 |
P value = 0.0207 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
22Q LOSS MUTATED | 9 | 36 | 13 |
22Q LOSS WILD-TYPE | 31 | 41 | 32 |
P value = 0.0179 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
22Q LOSS MUTATED | 8 | 32 | 10 | 8 |
22Q LOSS WILD-TYPE | 24 | 33 | 34 | 13 |
P value = 0.0022 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
22Q LOSS MUTATED | 11 | 33 | 7 | 7 |
22Q LOSS WILD-TYPE | 23 | 31 | 36 | 14 |
P value = 0.0319 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
22Q LOSS MUTATED | 15 | 18 | 25 |
22Q LOSS WILD-TYPE | 48 | 26 | 30 |
P value = 0.0342 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 33 | 50 | 16 | 33 | 29 |
22Q LOSS MUTATED | 9 | 26 | 7 | 7 | 9 |
22Q LOSS WILD-TYPE | 24 | 24 | 9 | 26 | 20 |
P value = 0.00017 (Fisher's exact test), Q value = 0.0059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
XP LOSS MUTATED | 7 | 4 | 2 | 25 | 10 |
XP LOSS WILD-TYPE | 30 | 36 | 8 | 25 | 15 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
XP LOSS MUTATED | 10 | 34 | 4 |
XP LOSS WILD-TYPE | 30 | 43 | 41 |
P value = 0.0363 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 23 | 18 |
XP LOSS MUTATED | 7 | 8 | 8 | 1 |
XP LOSS WILD-TYPE | 9 | 12 | 15 | 17 |
P value = 0.0148 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
XP LOSS MUTATED | 10 | 27 | 9 | 2 |
XP LOSS WILD-TYPE | 22 | 38 | 35 | 19 |
P value = 0.00108 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
XP LOSS MUTATED | 7 | 29 | 11 | 1 |
XP LOSS WILD-TYPE | 27 | 35 | 32 | 20 |
P value = 7e-04 (Fisher's exact test), Q value = 0.013
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
XP LOSS MUTATED | 12 | 9 | 27 |
XP LOSS WILD-TYPE | 51 | 35 | 28 |
P value = 0.0177 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
XP LOSS MUTATED | 15 | 23 | 7 | 3 |
XP LOSS WILD-TYPE | 51 | 31 | 11 | 21 |
P value = 0.00839 (Fisher's exact test), Q value = 0.089
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
XP LOSS MUTATED | 3 | 20 | 6 | 6 | 5 | 7 | 1 |
XP LOSS WILD-TYPE | 15 | 21 | 21 | 9 | 18 | 11 | 18 |
P value = 6e-05 (Fisher's exact test), Q value = 0.0023
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 37 | 40 | 10 | 50 | 25 |
XQ LOSS MUTATED | 7 | 4 | 2 | 26 | 10 |
XQ LOSS WILD-TYPE | 30 | 36 | 8 | 24 | 15 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 40 | 77 | 45 |
XQ LOSS MUTATED | 10 | 35 | 4 |
XQ LOSS WILD-TYPE | 30 | 42 | 41 |
P value = 0.0239 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 16 | 20 | 23 | 18 |
XQ LOSS MUTATED | 7 | 9 | 8 | 1 |
XQ LOSS WILD-TYPE | 9 | 11 | 15 | 17 |
P value = 0.00932 (Fisher's exact test), Q value = 0.095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 32 | 65 | 44 | 21 |
XQ LOSS MUTATED | 10 | 28 | 9 | 2 |
XQ LOSS WILD-TYPE | 22 | 37 | 35 | 19 |
P value = 0.00058 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 34 | 64 | 43 | 21 |
XQ LOSS MUTATED | 7 | 30 | 11 | 1 |
XQ LOSS WILD-TYPE | 27 | 34 | 32 | 20 |
P value = 0.00125 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 63 | 44 | 55 |
XQ LOSS MUTATED | 12 | 10 | 27 |
XQ LOSS WILD-TYPE | 51 | 34 | 28 |
P value = 0.0103 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 66 | 54 | 18 | 24 |
XQ LOSS MUTATED | 15 | 24 | 7 | 3 |
XQ LOSS WILD-TYPE | 51 | 30 | 11 | 21 |
P value = 0.00415 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 |
---|---|---|---|---|---|---|---|
ALL | 18 | 41 | 27 | 15 | 23 | 18 | 19 |
XQ LOSS MUTATED | 3 | 21 | 6 | 6 | 5 | 7 | 1 |
XQ LOSS WILD-TYPE | 15 | 20 | 21 | 9 | 18 | 11 | 18 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PCPG-TP/22533878/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/PCPG-TP/22542422/PCPG-TP.transferedmergedcluster.txt
-
Number of patients = 162
-
Number of significantly arm-level cnvs = 70
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.