This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and selected clinical features.
Testing the association between copy number variation 80 arm-level events and 11 clinical features across 492 patients, 321 significant findings detected with Q value < 0.25.
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1p gain cnv correlated to 'PATHOLOGY_T_STAGE', 'RADIATION_THERAPY', and 'GLEASON_SCORE'.
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1q gain cnv correlated to 'PATHOLOGY_T_STAGE', 'RADIATION_THERAPY', and 'GLEASON_SCORE'.
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2p gain cnv correlated to 'GLEASON_SCORE' and 'PSA_VALUE'.
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2q gain cnv correlated to 'PSA_VALUE'.
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3p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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3q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
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4q gain cnv correlated to 'PATHOLOGY_N_STAGE'.
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5p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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5q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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6p gain cnv correlated to 'Time to Death', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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6q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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7p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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7q gain cnv correlated to 'YEARS_TO_BIRTH', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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8p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', 'GLEASON_SCORE', and 'PSA_VALUE'.
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8q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', 'GLEASON_SCORE', and 'PSA_VALUE'.
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9p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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9q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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10p gain cnv correlated to 'NUMBER_OF_LYMPH_NODES' and 'GLEASON_SCORE'.
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10q gain cnv correlated to 'NUMBER_OF_LYMPH_NODES' and 'GLEASON_SCORE'.
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11p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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11q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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12p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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12q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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14q gain cnv correlated to 'YEARS_TO_BIRTH', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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16p gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
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16q gain cnv correlated to 'YEARS_TO_BIRTH'.
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17p gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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17q gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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18p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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18q gain cnv correlated to 'Time to Death' and 'PATHOLOGY_T_STAGE'.
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19p gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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19q gain cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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20p gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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20q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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21q gain cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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22q gain cnv correlated to 'GLEASON_SCORE'.
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xp gain cnv correlated to 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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xq gain cnv correlated to 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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1p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'RADIATION_THERAPY', and 'GLEASON_SCORE'.
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1q loss cnv correlated to 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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2p loss cnv correlated to 'YEARS_TO_BIRTH' and 'PATHOLOGY_T_STAGE'.
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2q loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', and 'GLEASON_SCORE'.
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3p loss cnv correlated to 'GLEASON_SCORE'.
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3q loss cnv correlated to 'GLEASON_SCORE'.
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4p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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4q loss cnv correlated to 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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5p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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5q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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6p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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6q loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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8p loss cnv correlated to 'PATHOLOGY_T_STAGE' and 'NUMBER_OF_LYMPH_NODES'.
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8q loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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9p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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9q loss cnv correlated to 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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10p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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10q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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11p loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', and 'GLEASON_SCORE'.
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11q loss cnv correlated to 'PATHOLOGY_T_STAGE' and 'GLEASON_SCORE'.
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12p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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12q loss cnv correlated to 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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13q loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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14q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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15q loss cnv correlated to 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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16q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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17p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
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17q loss cnv correlated to 'Time to Death', 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', and 'GLEASON_SCORE'.
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18p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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18q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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19p loss cnv correlated to 'YEARS_TO_BIRTH' and 'GLEASON_SCORE'.
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19q loss cnv correlated to 'YEARS_TO_BIRTH' and 'GLEASON_SCORE'.
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20p loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', and 'NUMBER_OF_LYMPH_NODES'.
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20q loss cnv correlated to 'GLEASON_SCORE'.
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21q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'NUMBER_OF_LYMPH_NODES', and 'GLEASON_SCORE'.
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22q loss cnv correlated to 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'RESIDUAL_TUMOR', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
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xp loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
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xq loss cnv correlated to 'Time to Death', 'YEARS_TO_BIRTH', 'PATHOLOGY_T_STAGE', 'PATHOLOGY_N_STAGE', 'RADIATION_THERAPY', 'NUMBER_OF_LYMPH_NODES', 'GLEASON_SCORE', and 'PSA_VALUE'.
Clinical Features |
Time to Death |
YEARS TO BIRTH |
PATHOLOGY T STAGE |
PATHOLOGY N STAGE |
RADIATION THERAPY |
HISTOLOGICAL TYPE |
RESIDUAL TUMOR |
NUMBER OF LYMPH NODES |
GLEASON SCORE |
PSA VALUE |
RACE | ||
nCNV (%) | nWild-Type | logrank test | Wilcoxon-test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Wilcoxon-test | Wilcoxon-test | Wilcoxon-test | Fisher's exact test | |
xp loss | 38 (8%) | 454 |
0.0422 (0.139) |
0.0852 (0.238) |
0.00413 (0.0256) |
0.0111 (0.0522) |
0.0336 (0.117) |
0.295 (0.551) |
0.159 (0.376) |
0.000414 (0.00485) |
3.01e-07 (2.21e-05) |
0.0221 (0.0832) |
0.388 (0.661) |
xq loss | 38 (8%) | 454 |
0.0422 (0.139) |
0.0852 (0.238) |
0.0041 (0.0256) |
0.0111 (0.0522) |
0.0336 (0.117) |
0.295 (0.551) |
0.156 (0.37) |
0.000414 (0.00485) |
3.01e-07 (2.21e-05) |
0.0221 (0.0832) |
0.391 (0.665) |
3q gain | 54 (11%) | 438 |
0.0932 (0.254) |
0.00347 (0.0226) |
2e-05 (0.000476) |
0.0203 (0.0794) |
0.102 (0.272) |
0.191 (0.426) |
0.0102 (0.0498) |
0.00104 (0.00915) |
2.53e-09 (1.11e-06) |
0.0426 (0.14) |
0.636 (0.889) |
5p gain | 23 (5%) | 469 |
0.403 (0.678) |
0.00182 (0.0141) |
0.00015 (0.0024) |
0.00242 (0.0175) |
0.0274 (0.1) |
0.493 (0.765) |
0.018 (0.0741) |
5.9e-05 (0.00112) |
1.92e-06 (8.46e-05) |
0.359 (0.625) |
|
12p gain | 15 (3%) | 477 |
0.552 (0.814) |
0.00652 (0.0344) |
0.00171 (0.0133) |
0.0499 (0.156) |
0.0772 (0.218) |
1 (1.00) |
0.0029 (0.0199) |
0.00846 (0.0428) |
3.13e-06 (0.00011) |
0.509 (0.781) |
|
12q gain | 18 (4%) | 474 |
0.55 (0.814) |
0.0399 (0.134) |
0.00392 (0.0247) |
0.039 (0.132) |
0.0111 (0.0522) |
1 (1.00) |
9e-05 (0.00155) |
0.00502 (0.0292) |
1.9e-06 (8.46e-05) |
0.856 (1.00) |
|
20q gain | 29 (6%) | 463 |
0.463 (0.739) |
0.00341 (0.0225) |
0.00023 (0.00326) |
0.0665 (0.2) |
0.0765 (0.218) |
1 (1.00) |
0.0434 (0.142) |
0.0132 (0.0574) |
0.000329 (0.0042) |
0.21 (0.449) |
1 (1.00) |
22q loss | 47 (10%) | 445 |
0.227 (0.468) |
0.481 (0.757) |
2e-05 (0.000476) |
0.000716 (0.00692) |
0.0128 (0.0571) |
0.634 (0.888) |
0.0101 (0.0494) |
0.000565 (0.00578) |
3.76e-08 (4.36e-06) |
0.0709 (0.208) |
0.492 (0.765) |
3p gain | 40 (8%) | 452 |
0.263 (0.504) |
0.00152 (0.0123) |
0.00156 (0.0125) |
0.0484 (0.154) |
0.177 (0.404) |
0.0967 (0.261) |
0.039 (0.132) |
0.00316 (0.0212) |
2.34e-08 (3.8e-06) |
0.363 (0.629) |
0.525 (0.794) |
5q gain | 12 (2%) | 480 |
0.674 (0.918) |
0.000167 (0.00258) |
0.00871 (0.0435) |
0.00675 (0.0351) |
1 (1.00) |
1 (1.00) |
0.0221 (0.0832) |
0.000307 (0.00404) |
0.00198 (0.0151) |
0.182 (0.411) |
|
9p gain | 34 (7%) | 458 |
0.827 (1.00) |
0.00442 (0.0272) |
9e-05 (0.00155) |
0.000466 (0.00537) |
0.177 (0.404) |
0.251 (0.492) |
0.0131 (0.0574) |
8.33e-05 (0.0015) |
1.04e-06 (5.73e-05) |
0.543 (0.81) |
0.347 (0.617) |
9q gain | 48 (10%) | 444 |
0.977 (1.00) |
0.0124 (0.0552) |
1e-05 (0.000293) |
1.46e-05 (0.00039) |
0.171 (0.395) |
0.148 (0.354) |
0.0109 (0.0522) |
5.43e-07 (3.67e-05) |
2.59e-08 (3.8e-06) |
0.948 (1.00) |
0.46 (0.739) |
11p gain | 27 (5%) | 465 |
0.552 (0.814) |
0.0288 (0.104) |
0.00163 (0.0128) |
0.00293 (0.02) |
0.133 (0.328) |
1 (1.00) |
0.00861 (0.0433) |
0.00107 (0.00931) |
1.4e-05 (0.000386) |
0.324 (0.592) |
0.259 (0.5) |
11q gain | 30 (6%) | 462 |
0.514 (0.785) |
0.033 (0.117) |
0.00274 (0.0191) |
0.00232 (0.0172) |
0.25 (0.491) |
1 (1.00) |
0.0122 (0.055) |
0.000622 (0.0063) |
2.11e-06 (8.83e-05) |
0.665 (0.913) |
0.262 (0.503) |
4p loss | 23 (5%) | 469 |
0.55 (0.814) |
0.117 (0.303) |
0.0497 (0.156) |
0.000159 (0.0025) |
0.0442 (0.144) |
0.493 (0.765) |
0.0188 (0.0768) |
1.13e-05 (0.00032) |
1.51e-06 (7.83e-05) |
0.849 (1.00) |
1 (1.00) |
6q loss | 41 (8%) | 451 |
0.0475 (0.152) |
0.381 (0.653) |
0.00159 (0.0126) |
0.00746 (0.0384) |
0.0209 (0.0809) |
0.619 (0.87) |
0.121 (0.306) |
0.00086 (0.00814) |
9.51e-09 (2.79e-06) |
0.483 (0.757) |
0.125 (0.313) |
8q loss | 21 (4%) | 471 |
0.000979 (0.0087) |
0.845 (1.00) |
0.00112 (0.00957) |
0.00446 (0.0272) |
0.0585 (0.179) |
1 (1.00) |
0.436 (0.717) |
0.000221 (0.00326) |
0.0419 (0.139) |
0.333 (0.604) |
1 (1.00) |
13q loss | 78 (16%) | 414 |
0.705 (0.931) |
0.0673 (0.202) |
0.00067 (0.0067) |
0.0121 (0.0546) |
0.569 (0.834) |
0.708 (0.931) |
0.0262 (0.0968) |
0.0048 (0.0287) |
1.65e-11 (1.45e-08) |
0.143 (0.347) |
0.437 (0.718) |
17p loss | 76 (15%) | 416 |
0.86 (1.00) |
0.347 (0.617) |
0.00093 (0.00835) |
0.011 (0.0522) |
0.179 (0.408) |
0.706 (0.931) |
0.0404 (0.135) |
0.000816 (0.0078) |
2.91e-06 (0.000109) |
0.0418 (0.139) |
0.703 (0.931) |
18q loss | 100 (20%) | 392 |
0.726 (0.943) |
0.303 (0.562) |
0.0013 (0.0109) |
0.000362 (0.00455) |
0.0368 (0.126) |
1 (1.00) |
3e-05 (0.00066) |
4.61e-05 (0.000954) |
2.12e-08 (3.8e-06) |
0.274 (0.522) |
0.747 (0.956) |
8p gain | 68 (14%) | 424 |
0.706 (0.931) |
0.00624 (0.0335) |
0.00811 (0.0413) |
0.731 (0.946) |
0.318 (0.584) |
0.235 (0.476) |
0.0113 (0.0527) |
0.856 (1.00) |
2.45e-07 (2.16e-05) |
0.0883 (0.246) |
0.658 (0.906) |
8q gain | 126 (26%) | 366 |
0.694 (0.931) |
0.0701 (0.208) |
0.00024 (0.00335) |
0.205 (0.444) |
0.202 (0.444) |
0.535 (0.803) |
0.00092 (0.00835) |
0.134 (0.329) |
4.66e-08 (4.55e-06) |
0.0764 (0.218) |
0.739 (0.954) |
16p gain | 32 (7%) | 460 |
0.24 (0.48) |
0.202 (0.444) |
0.00071 (0.00692) |
0.00232 (0.0172) |
0.25 (0.491) |
1 (1.00) |
0.191 (0.426) |
0.00141 (0.0115) |
2.98e-06 (0.000109) |
0.0717 (0.209) |
1 (1.00) |
17p gain | 8 (2%) | 484 |
0.745 (0.956) |
0.359 (0.625) |
0.0168 (0.0712) |
0.00652 (0.0344) |
0.0745 (0.215) |
1 (1.00) |
0.796 (0.992) |
0.00128 (0.0109) |
0.0553 (0.171) |
0.976 (1.00) |
|
18p gain | 19 (4%) | 473 |
0.22 (0.461) |
0.00995 (0.0492) |
0.00236 (0.0173) |
0.00535 (0.0306) |
1 (1.00) |
1 (1.00) |
0.594 (0.849) |
0.00558 (0.0313) |
0.0765 (0.218) |
0.455 (0.735) |
1 (1.00) |
19p gain | 12 (2%) | 480 |
0.644 (0.896) |
0.261 (0.502) |
0.00053 (0.00555) |
0.0115 (0.0531) |
0.663 (0.912) |
1 (1.00) |
0.0613 (0.187) |
0.000926 (0.00835) |
0.000226 (0.00326) |
0.933 (1.00) |
|
19q gain | 12 (2%) | 480 |
0.622 (0.873) |
0.205 (0.444) |
0.00052 (0.00553) |
0.0115 (0.0531) |
1 (1.00) |
1 (1.00) |
0.0622 (0.188) |
0.000926 (0.00835) |
0.000226 (0.00326) |
0.955 (1.00) |
1 (1.00) |
20p gain | 26 (5%) | 466 |
0.319 (0.584) |
0.0474 (0.152) |
0.00624 (0.0335) |
0.0495 (0.156) |
0.111 (0.288) |
1 (1.00) |
0.259 (0.5) |
0.0116 (0.0533) |
0.000516 (0.00553) |
0.203 (0.444) |
|
21q gain | 21 (4%) | 471 |
0.382 (0.653) |
0.00541 (0.0307) |
0.0158 (0.0674) |
0.0362 (0.125) |
1 (1.00) |
0.462 (0.739) |
0.0932 (0.254) |
0.00448 (0.0272) |
5.71e-05 (0.00112) |
0.707 (0.931) |
1 (1.00) |
4q loss | 16 (3%) | 476 |
0.653 (0.904) |
0.248 (0.49) |
0.108 (0.284) |
0.015 (0.065) |
0.0111 (0.0522) |
0.374 (0.645) |
0.0361 (0.125) |
0.000556 (0.00576) |
5.89e-06 (0.000199) |
0.593 (0.848) |
|
5q loss | 23 (5%) | 469 |
0.585 (0.843) |
0.706 (0.931) |
3e-05 (0.00066) |
0.00051 (0.00553) |
0.00925 (0.046) |
1 (1.00) |
0.139 (0.341) |
6.25e-05 (0.00115) |
1.92e-06 (8.46e-05) |
0.986 (1.00) |
1 (1.00) |
6p loss | 26 (5%) | 466 |
0.272 (0.519) |
0.762 (0.964) |
0.00201 (0.0151) |
0.00364 (0.0233) |
0.226 (0.468) |
1 (1.00) |
0.0897 (0.249) |
0.00254 (0.0181) |
9.2e-06 (0.000289) |
0.164 (0.387) |
0.307 (0.568) |
10p loss | 41 (8%) | 451 |
0.741 (0.955) |
0.132 (0.326) |
2e-05 (0.000476) |
0.000292 (0.00389) |
0.223 (0.465) |
1 (1.00) |
0.0175 (0.0725) |
2.63e-05 (0.000609) |
2.96e-06 (0.000109) |
0.396 (0.67) |
1 (1.00) |
10q loss | 43 (9%) | 449 |
0.784 (0.983) |
0.277 (0.524) |
0.0002 (0.00303) |
0.000381 (0.00472) |
0.244 (0.483) |
1 (1.00) |
0.00633 (0.0338) |
4.66e-05 (0.000954) |
3.96e-08 (4.36e-06) |
0.56 (0.822) |
0.583 (0.843) |
14q loss | 25 (5%) | 467 |
0.354 (0.625) |
0.101 (0.271) |
0.00051 (0.00553) |
0.0296 (0.106) |
1 (1.00) |
0.523 (0.793) |
0.0175 (0.0725) |
0.0336 (0.117) |
0.0004 (0.00482) |
0.128 (0.319) |
1 (1.00) |
15q loss | 35 (7%) | 457 |
0.849 (1.00) |
0.0174 (0.0725) |
1e-05 (0.000293) |
0.00298 (0.0202) |
0.177 (0.404) |
1 (1.00) |
0.143 (0.346) |
0.000925 (0.00835) |
7.26e-06 (0.000237) |
0.239 (0.48) |
1 (1.00) |
16q loss | 107 (22%) | 385 |
0.356 (0.625) |
0.223 (0.465) |
0.00068 (0.00672) |
0.0727 (0.211) |
0.499 (0.772) |
1 (1.00) |
0.0153 (0.066) |
0.0278 (0.102) |
9.76e-07 (5.73e-05) |
0.319 (0.584) |
1 (1.00) |
6p gain | 10 (2%) | 482 |
0.0397 (0.134) |
0.331 (0.603) |
0.18 (0.408) |
0.0216 (0.0832) |
0.102 (0.271) |
1 (1.00) |
0.217 (0.458) |
0.0162 (0.0687) |
0.031 (0.11) |
0.333 (0.604) |
|
6q gain | 6 (1%) | 486 |
0.72 (0.941) |
0.0716 (0.209) |
0.484 (0.757) |
0.0781 (0.219) |
0.131 (0.323) |
1 (1.00) |
0.236 (0.476) |
0.046 (0.148) |
0.0909 (0.249) |
0.769 (0.967) |
|
7p gain | 101 (21%) | 391 |
0.116 (0.3) |
0.012 (0.0542) |
0.0382 (0.13) |
0.438 (0.718) |
0.483 (0.757) |
0.745 (0.956) |
0.00201 (0.0151) |
0.233 (0.476) |
3.88e-05 (0.000832) |
0.697 (0.931) |
0.724 (0.943) |
14q gain | 10 (2%) | 482 |
0.391 (0.665) |
0.0293 (0.105) |
0.797 (0.992) |
0.217 (0.458) |
0.00277 (0.0192) |
0.253 (0.492) |
0.0452 (0.146) |
0.213 (0.455) |
0.00366 (0.0233) |
0.432 (0.716) |
|
17q gain | 11 (2%) | 481 |
0.719 (0.941) |
0.219 (0.461) |
0.00451 (0.0272) |
0.00675 (0.0351) |
0.165 (0.387) |
1 (1.00) |
0.843 (1.00) |
0.00258 (0.0183) |
0.0706 (0.208) |
0.538 (0.805) |
|
5p loss | 12 (2%) | 480 |
0.727 (0.943) |
0.839 (1.00) |
0.00047 (0.00537) |
0.123 (0.31) |
0.00498 (0.0292) |
1 (1.00) |
0.0619 (0.188) |
0.149 (0.355) |
5.56e-05 (0.00111) |
0.206 (0.444) |
1 (1.00) |
9p loss | 21 (4%) | 471 |
0.41 (0.687) |
0.348 (0.617) |
0.0204 (0.0794) |
0.0696 (0.207) |
0.49 (0.765) |
1 (1.00) |
0.919 (1.00) |
0.0217 (0.0832) |
0.00595 (0.0327) |
0.528 (0.798) |
1 (1.00) |
12p loss | 47 (10%) | 445 |
0.36 (0.627) |
0.582 (0.842) |
0.00565 (0.0315) |
0.000521 (0.00553) |
0.482 (0.757) |
0.381 (0.653) |
0.254 (0.493) |
0.000399 (0.00482) |
0.000505 (0.00553) |
0.145 (0.35) |
1 (1.00) |
17q loss | 20 (4%) | 472 |
0.0771 (0.218) |
0.548 (0.813) |
0.0199 (0.0793) |
0.364 (0.629) |
0.727 (0.943) |
1 (1.00) |
0.0346 (0.12) |
0.337 (0.606) |
0.00332 (0.0221) |
0.581 (0.842) |
1 (1.00) |
18p loss | 67 (14%) | 425 |
0.928 (1.00) |
0.224 (0.465) |
0.00611 (0.0332) |
0.11 (0.288) |
0.101 (0.271) |
0.42 (0.699) |
0.00787 (0.0403) |
0.0456 (0.147) |
7.39e-07 (4.65e-05) |
0.756 (0.961) |
0.698 (0.931) |
20p loss | 19 (4%) | 473 |
0.227 (0.468) |
0.806 (1.00) |
0.0523 (0.163) |
0.0218 (0.0832) |
0.073 (0.211) |
1 (1.00) |
0.909 (1.00) |
0.00523 (0.0301) |
0.376 (0.646) |
0.875 (1.00) |
0.349 (0.618) |
21q loss | 24 (5%) | 468 |
0.586 (0.843) |
0.737 (0.953) |
0.0024 (0.0175) |
0.00364 (0.0233) |
0.525 (0.794) |
0.508 (0.781) |
0.341 (0.612) |
0.00138 (0.0114) |
0.000329 (0.0042) |
0.207 (0.445) |
1 (1.00) |
1p gain | 15 (3%) | 477 |
0.634 (0.888) |
0.17 (0.395) |
0.00025 (0.00344) |
0.299 (0.558) |
0.0259 (0.0963) |
1 (1.00) |
0.202 (0.444) |
0.454 (0.735) |
0.000261 (0.00353) |
0.498 (0.772) |
1 (1.00) |
1q gain | 26 (5%) | 466 |
0.51 (0.781) |
0.202 (0.444) |
6e-05 (0.00112) |
0.104 (0.274) |
0.0334 (0.117) |
0.537 (0.805) |
0.127 (0.315) |
0.102 (0.271) |
9.82e-05 (0.00166) |
0.646 (0.898) |
1 (1.00) |
7q gain | 94 (19%) | 398 |
0.131 (0.323) |
0.0202 (0.0793) |
0.0936 (0.254) |
0.874 (1.00) |
0.472 (0.753) |
1 (1.00) |
0.00112 (0.00957) |
0.992 (1.00) |
0.000118 (0.00196) |
0.873 (1.00) |
0.708 (0.931) |
xp gain | 7 (1%) | 485 |
0.763 (0.964) |
0.204 (0.444) |
0.0195 (0.0786) |
0.119 (0.303) |
0.573 (0.834) |
1 (1.00) |
0.00602 (0.0329) |
0.182 (0.411) |
0.00501 (0.0292) |
0.795 (0.992) |
|
xq gain | 7 (1%) | 485 |
0.763 (0.964) |
0.204 (0.444) |
0.0192 (0.0782) |
0.119 (0.303) |
0.573 (0.834) |
1 (1.00) |
0.00557 (0.0313) |
0.182 (0.411) |
0.00501 (0.0292) |
0.795 (0.992) |
|
1p loss | 22 (4%) | 470 |
0.533 (0.803) |
0.542 (0.81) |
0.0246 (0.0921) |
0.244 (0.483) |
0.0442 (0.144) |
1 (1.00) |
0.435 (0.717) |
0.173 (0.399) |
1.91e-05 (0.000476) |
0.283 (0.534) |
1 (1.00) |
1q loss | 6 (1%) | 486 |
0.751 (0.958) |
0.67 (0.917) |
0.196 (0.436) |
0.228 (0.471) |
0.507 (0.78) |
1 (1.00) |
0.0553 (0.171) |
0.0768 (0.218) |
0.0909 (0.249) |
0.363 (0.629) |
|
2q loss | 18 (4%) | 474 |
0.604 (0.859) |
0.0197 (0.0789) |
0.0194 (0.0786) |
0.749 (0.957) |
0.707 (0.931) |
1 (1.00) |
0.118 (0.303) |
0.519 (0.789) |
0.0202 (0.0793) |
0.673 (0.918) |
|
9q loss | 11 (2%) | 481 |
0.682 (0.925) |
1 (1.00) |
0.126 (0.315) |
0.0909 (0.249) |
1 (1.00) |
1 (1.00) |
0.685 (0.927) |
0.071 (0.208) |
0.013 (0.0573) |
0.343 (0.613) |
1 (1.00) |
11p loss | 8 (2%) | 484 |
0.00506 (0.0293) |
0.308 (0.568) |
0.0749 (0.215) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.145 (0.35) |
0.721 (0.941) |
0.0196 (0.0786) |
0.995 (1.00) |
|
12q loss | 20 (4%) | 472 |
0.546 (0.811) |
0.936 (1.00) |
0.122 (0.308) |
0.0171 (0.0721) |
1 (1.00) |
1 (1.00) |
0.237 (0.476) |
0.0158 (0.0674) |
0.00135 (0.0112) |
0.462 (0.739) |
1 (1.00) |
2p gain | 11 (2%) | 481 |
0.694 (0.931) |
0.615 (0.869) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.216 (0.458) |
0.488 (0.763) |
0.0578 (0.178) |
0.0498 (0.156) |
|
10p gain | 15 (3%) | 477 |
0.45 (0.733) |
0.17 (0.395) |
0.303 (0.562) |
0.149 (0.355) |
0.705 (0.931) |
0.356 (0.625) |
0.153 (0.364) |
0.0288 (0.104) |
0.00263 (0.0185) |
0.459 (0.738) |
1 (1.00) |
10q gain | 14 (3%) | 478 |
0.442 (0.723) |
0.724 (0.943) |
0.455 (0.735) |
0.269 (0.515) |
0.233 (0.476) |
0.336 (0.606) |
0.171 (0.395) |
0.0677 (0.202) |
0.0259 (0.0963) |
0.231 (0.474) |
1 (1.00) |
18q gain | 10 (2%) | 482 |
0.0657 (0.198) |
0.112 (0.289) |
0.0283 (0.103) |
0.4 (0.676) |
1 (1.00) |
1 (1.00) |
0.686 (0.927) |
0.515 (0.785) |
0.243 (0.483) |
0.589 (0.845) |
1 (1.00) |
2p loss | 14 (3%) | 478 |
0.535 (0.803) |
0.00694 (0.0359) |
0.0132 (0.0574) |
1 (1.00) |
1 (1.00) |
1 (1.00) |
0.199 (0.443) |
0.763 (0.964) |
0.166 (0.387) |
0.241 (0.481) |
|
8p loss | 171 (35%) | 321 |
0.405 (0.679) |
0.475 (0.756) |
0.00012 (0.00196) |
0.146 (0.352) |
0.771 (0.967) |
1 (1.00) |
0.455 (0.735) |
0.0528 (0.164) |
0.653 (0.904) |
0.256 (0.496) |
0.161 (0.381) |
11q loss | 5 (1%) | 487 |
0.898 (1.00) |
0.337 (0.606) |
0.0274 (0.1) |
0.333 (0.604) |
1 (1.00) |
1 (1.00) |
0.103 (0.274) |
0.0341 (0.119) |
0.697 (0.931) |
||
19p loss | 19 (4%) | 473 |
0.575 (0.836) |
0.0103 (0.0498) |
0.215 (0.457) |
1 (1.00) |
0.718 (0.941) |
1 (1.00) |
0.425 (0.706) |
0.746 (0.956) |
0.01 (0.0493) |
0.944 (1.00) |
1 (1.00) |
19q loss | 18 (4%) | 474 |
0.585 (0.843) |
0.0174 (0.0725) |
0.118 (0.303) |
1 (1.00) |
0.478 (0.757) |
1 (1.00) |
0.369 (0.636) |
0.832 (1.00) |
0.0202 (0.0793) |
0.77 (0.967) |
1 (1.00) |
2q gain | 7 (1%) | 485 |
0.795 (0.992) |
0.414 (0.692) |
0.747 (0.956) |
1 (1.00) |
0.507 (0.78) |
1 (1.00) |
0.237 (0.476) |
0.827 (1.00) |
0.281 (0.531) |
0.00569 (0.0315) |
|
4q gain | 10 (2%) | 482 |
0.67 (0.917) |
0.204 (0.444) |
0.183 (0.411) |
0.0909 (0.249) |
0.336 (0.606) |
0.253 (0.492) |
0.544 (0.81) |
0.121 (0.306) |
0.582 (0.842) |
0.234 (0.476) |
|
16q gain | 7 (1%) | 485 |
0.838 (1.00) |
0.0118 (0.0537) |
0.356 (0.625) |
1 (1.00) |
0.573 (0.834) |
1 (1.00) |
1 (1.00) |
0.955 (1.00) |
0.18 (0.409) |
0.614 (0.869) |
1 (1.00) |
22q gain | 4 (1%) | 488 |
0.799 (0.993) |
0.433 (0.716) |
0.676 (0.919) |
0.557 (0.819) |
0.432 (0.716) |
1 (1.00) |
0.658 (0.906) |
0.616 (0.869) |
0.0221 (0.0832) |
0.237 (0.476) |
|
3p loss | 9 (2%) | 483 |
0.656 (0.906) |
0.769 (0.967) |
0.251 (0.492) |
0.166 (0.387) |
0.284 (0.534) |
1 (1.00) |
0.217 (0.458) |
0.142 (0.346) |
0.00342 (0.0225) |
0.122 (0.307) |
|
3q loss | 5 (1%) | 487 |
0.693 (0.931) |
0.29 (0.545) |
0.688 (0.929) |
0.59 (0.845) |
0.507 (0.78) |
1 (1.00) |
0.343 (0.613) |
0.274 (0.522) |
0.00393 (0.0247) |
0.207 (0.445) |
|
20q loss | 8 (2%) | 484 |
0.76 (0.964) |
0.358 (0.625) |
0.286 (0.538) |
0.617 (0.869) |
0.231 (0.474) |
1 (1.00) |
0.607 (0.862) |
0.517 (0.788) |
0.0605 (0.185) |
0.601 (0.858) |
1 (1.00) |
4p gain | 9 (2%) | 483 |
0.675 (0.918) |
0.105 (0.277) |
0.252 (0.492) |
0.672 (0.918) |
1 (1.00) |
1 (1.00) |
0.642 (0.896) |
0.395 (0.67) |
0.435 (0.717) |
0.418 (0.698) |
1 (1.00) |
13q gain | 8 (2%) | 484 |
0.48 (0.757) |
0.458 (0.738) |
0.21 (0.449) |
0.617 (0.869) |
0.605 (0.859) |
0.208 (0.445) |
0.483 (0.757) |
0.649 (0.901) |
0.705 (0.931) |
0.234 (0.476) |
|
15q gain | 6 (1%) | 486 |
0.755 (0.961) |
0.925 (1.00) |
1 (1.00) |
0.303 (0.562) |
0.573 (0.834) |
1 (1.00) |
1 (1.00) |
0.401 (0.676) |
0.11 (0.288) |
0.355 (0.625) |
|
16p loss | 31 (6%) | 461 |
0.477 (0.757) |
0.878 (1.00) |
0.718 (0.941) |
0.443 (0.723) |
1 (1.00) |
1 (1.00) |
0.444 (0.724) |
0.312 (0.574) |
0.0961 (0.26) |
0.869 (1.00) |
1 (1.00) |
P value = 0.00025 (Fisher's exact test), Q value = 0.0034
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
1P GAIN MUTATED | 0 | 13 | 2 |
1P GAIN WILD-TYPE | 187 | 275 | 8 |
P value = 0.0259 (Fisher's exact test), Q value = 0.096
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
1P GAIN MUTATED | 9 | 5 |
1P GAIN WILD-TYPE | 381 | 54 |
P value = 0.000261 (Wilcoxon-test), Q value = 0.0035
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
1P GAIN MUTATED | 15 | 8.6 (0.9) |
1P GAIN WILD-TYPE | 477 | 7.6 (1.0) |
P value = 6e-05 (Fisher's exact test), Q value = 0.0011
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
1Q GAIN MUTATED | 2 | 21 | 3 |
1Q GAIN WILD-TYPE | 185 | 267 | 7 |
P value = 0.0334 (Fisher's exact test), Q value = 0.12
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
1Q GAIN MUTATED | 18 | 7 |
1Q GAIN WILD-TYPE | 372 | 52 |
P value = 9.82e-05 (Wilcoxon-test), Q value = 0.0017
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
1Q GAIN MUTATED | 26 | 8.4 (0.9) |
1Q GAIN WILD-TYPE | 466 | 7.6 (1.0) |
P value = 0.0578 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
2P GAIN MUTATED | 11 | 8.2 (1.1) |
2P GAIN WILD-TYPE | 481 | 7.6 (1.0) |
P value = 0.0498 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 435 | 1.8 (15.9) |
2P GAIN MUTATED | 8 | 1.8 (2.5) |
2P GAIN WILD-TYPE | 427 | 1.8 (16.1) |
P value = 0.00569 (Wilcoxon-test), Q value = 0.032
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 435 | 1.8 (15.9) |
2Q GAIN MUTATED | 5 | 2.6 (3.0) |
2Q GAIN WILD-TYPE | 430 | 1.7 (16.0) |
P value = 0.00152 (Wilcoxon-test), Q value = 0.012
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
3P GAIN MUTATED | 38 | 64.4 (5.5) |
3P GAIN WILD-TYPE | 443 | 60.7 (6.8) |
P value = 0.00156 (Fisher's exact test), Q value = 0.012
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
3P GAIN MUTATED | 7 | 30 | 3 |
3P GAIN WILD-TYPE | 180 | 258 | 7 |
P value = 0.0484 (Fisher's exact test), Q value = 0.15
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
3P GAIN MUTATED | 27 | 12 |
3P GAIN WILD-TYPE | 316 | 65 |
P value = 0.039 (Fisher's exact test), Q value = 0.13
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
3P GAIN MUTATED | 18 | 18 | 1 | 1 |
3P GAIN WILD-TYPE | 295 | 126 | 4 | 14 |
P value = 0.00316 (Wilcoxon-test), Q value = 0.021
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
3P GAIN MUTATED | 35 | 1.1 (2.0) |
3P GAIN WILD-TYPE | 367 | 0.4 (1.3) |
P value = 2.34e-08 (Wilcoxon-test), Q value = 3.8e-06
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
3P GAIN MUTATED | 40 | 8.5 (0.9) |
3P GAIN WILD-TYPE | 452 | 7.5 (1.0) |
P value = 0.00347 (Wilcoxon-test), Q value = 0.023
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
3Q GAIN MUTATED | 52 | 63.6 (5.9) |
3Q GAIN WILD-TYPE | 429 | 60.7 (6.8) |
P value = 2e-05 (Fisher's exact test), Q value = 0.00048
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
3Q GAIN MUTATED | 7 | 43 | 4 |
3Q GAIN WILD-TYPE | 180 | 245 | 6 |
P value = 0.0203 (Fisher's exact test), Q value = 0.079
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
3Q GAIN MUTATED | 36 | 16 |
3Q GAIN WILD-TYPE | 307 | 61 |
P value = 0.0102 (Fisher's exact test), Q value = 0.05
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
3Q GAIN MUTATED | 24 | 25 | 1 | 2 |
3Q GAIN WILD-TYPE | 289 | 119 | 4 | 13 |
P value = 0.00104 (Wilcoxon-test), Q value = 0.0091
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
3Q GAIN MUTATED | 47 | 1.0 (2.0) |
3Q GAIN WILD-TYPE | 355 | 0.4 (1.2) |
P value = 2.53e-09 (Wilcoxon-test), Q value = 1.1e-06
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
3Q GAIN MUTATED | 54 | 8.4 (0.9) |
3Q GAIN WILD-TYPE | 438 | 7.5 (1.0) |
P value = 0.0426 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 435 | 1.8 (15.9) |
3Q GAIN MUTATED | 45 | 2.3 (7.6) |
3Q GAIN WILD-TYPE | 390 | 1.7 (16.7) |
P value = 0.0909 (Fisher's exact test), Q value = 0.25
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
4Q GAIN MUTATED | 6 | 4 |
4Q GAIN WILD-TYPE | 337 | 73 |
P value = 0.00182 (Wilcoxon-test), Q value = 0.014
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
5P GAIN MUTATED | 23 | 65.3 (5.5) |
5P GAIN WILD-TYPE | 458 | 60.8 (6.8) |
P value = 0.00015 (Fisher's exact test), Q value = 0.0024
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
5P GAIN MUTATED | 1 | 20 | 2 |
5P GAIN WILD-TYPE | 186 | 268 | 8 |
P value = 0.00242 (Fisher's exact test), Q value = 0.017
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
5P GAIN MUTATED | 12 | 10 |
5P GAIN WILD-TYPE | 331 | 67 |
P value = 0.0274 (Fisher's exact test), Q value = 0.1
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
5P GAIN MUTATED | 13 | 6 |
5P GAIN WILD-TYPE | 377 | 53 |
P value = 0.018 (Fisher's exact test), Q value = 0.074
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
5P GAIN MUTATED | 9 | 12 | 1 | 1 |
5P GAIN WILD-TYPE | 304 | 132 | 4 | 14 |
P value = 5.9e-05 (Wilcoxon-test), Q value = 0.0011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
5P GAIN MUTATED | 19 | 1.7 (2.6) |
5P GAIN WILD-TYPE | 383 | 0.4 (1.2) |
P value = 1.92e-06 (Wilcoxon-test), Q value = 8.5e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
5P GAIN MUTATED | 23 | 8.6 (0.8) |
5P GAIN WILD-TYPE | 469 | 7.6 (1.0) |
P value = 0.000167 (Wilcoxon-test), Q value = 0.0026
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
5Q GAIN MUTATED | 12 | 68.1 (3.8) |
5Q GAIN WILD-TYPE | 469 | 60.8 (6.8) |
P value = 0.00871 (Fisher's exact test), Q value = 0.044
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
5Q GAIN MUTATED | 0 | 12 | 0 |
5Q GAIN WILD-TYPE | 187 | 276 | 10 |
P value = 0.00675 (Fisher's exact test), Q value = 0.035
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
5Q GAIN MUTATED | 5 | 6 |
5Q GAIN WILD-TYPE | 338 | 71 |
P value = 0.0221 (Fisher's exact test), Q value = 0.083
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
5Q GAIN MUTATED | 4 | 6 | 1 | 1 |
5Q GAIN WILD-TYPE | 309 | 138 | 4 | 14 |
P value = 0.000307 (Wilcoxon-test), Q value = 0.004
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
5Q GAIN MUTATED | 10 | 2.3 (3.0) |
5Q GAIN WILD-TYPE | 392 | 0.4 (1.3) |
P value = 0.00198 (Wilcoxon-test), Q value = 0.015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
5Q GAIN MUTATED | 12 | 8.5 (0.8) |
5Q GAIN WILD-TYPE | 480 | 7.6 (1.0) |
P value = 0.0397 (logrank test), Q value = 0.13
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 492 | 9 | 0.8 - 165.2 (30.6) |
6P GAIN MUTATED | 10 | 1 | 4.3 - 109.2 (37.4) |
6P GAIN WILD-TYPE | 482 | 8 | 0.8 - 165.2 (30.5) |
P value = 0.0216 (Fisher's exact test), Q value = 0.083
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
6P GAIN MUTATED | 5 | 5 |
6P GAIN WILD-TYPE | 338 | 72 |
P value = 0.0162 (Wilcoxon-test), Q value = 0.069
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
6P GAIN MUTATED | 10 | 0.8 (1.0) |
6P GAIN WILD-TYPE | 392 | 0.4 (1.4) |
P value = 0.031 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
6P GAIN MUTATED | 10 | 8.3 (0.9) |
6P GAIN WILD-TYPE | 482 | 7.6 (1.0) |
P value = 0.0716 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
6Q GAIN MUTATED | 5 | 66.6 (5.0) |
6Q GAIN WILD-TYPE | 476 | 60.9 (6.8) |
P value = 0.0781 (Fisher's exact test), Q value = 0.22
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
6Q GAIN MUTATED | 3 | 3 |
6Q GAIN WILD-TYPE | 340 | 74 |
P value = 0.046 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
6Q GAIN MUTATED | 6 | 1.0 (1.3) |
6Q GAIN WILD-TYPE | 396 | 0.4 (1.4) |
P value = 0.0909 (Wilcoxon-test), Q value = 0.25
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
6Q GAIN MUTATED | 6 | 8.3 (1.0) |
6Q GAIN WILD-TYPE | 486 | 7.6 (1.0) |
P value = 0.012 (Wilcoxon-test), Q value = 0.054
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
7P GAIN MUTATED | 99 | 62.3 (6.6) |
7P GAIN WILD-TYPE | 382 | 60.6 (6.8) |
P value = 0.0382 (Fisher's exact test), Q value = 0.13
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
7P GAIN MUTATED | 29 | 71 | 1 |
7P GAIN WILD-TYPE | 158 | 217 | 9 |
P value = 0.00201 (Fisher's exact test), Q value = 0.015
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
7P GAIN MUTATED | 49 | 44 | 1 | 4 |
7P GAIN WILD-TYPE | 264 | 100 | 4 | 11 |
P value = 3.88e-05 (Wilcoxon-test), Q value = 0.00083
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
7P GAIN MUTATED | 101 | 8.0 (1.1) |
7P GAIN WILD-TYPE | 391 | 7.5 (1.0) |
P value = 0.0202 (Wilcoxon-test), Q value = 0.079
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
7Q GAIN MUTATED | 92 | 62.3 (6.8) |
7Q GAIN WILD-TYPE | 389 | 60.7 (6.8) |
P value = 0.00112 (Fisher's exact test), Q value = 0.0096
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
7Q GAIN MUTATED | 44 | 42 | 1 | 4 |
7Q GAIN WILD-TYPE | 269 | 102 | 4 | 11 |
P value = 0.000118 (Wilcoxon-test), Q value = 0.002
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
7Q GAIN MUTATED | 94 | 8.0 (1.1) |
7Q GAIN WILD-TYPE | 398 | 7.5 (1.0) |
P value = 0.00624 (Wilcoxon-test), Q value = 0.034
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
8P GAIN MUTATED | 68 | 62.9 (6.3) |
8P GAIN WILD-TYPE | 413 | 60.7 (6.8) |
P value = 0.00811 (Fisher's exact test), Q value = 0.041
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
8P GAIN MUTATED | 16 | 49 | 3 |
8P GAIN WILD-TYPE | 171 | 239 | 7 |
P value = 0.0113 (Fisher's exact test), Q value = 0.053
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
8P GAIN MUTATED | 33 | 31 | 1 | 1 |
8P GAIN WILD-TYPE | 280 | 113 | 4 | 14 |
P value = 2.45e-07 (Wilcoxon-test), Q value = 2.2e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
8P GAIN MUTATED | 68 | 8.2 (1.0) |
8P GAIN WILD-TYPE | 424 | 7.5 (1.0) |
P value = 0.0883 (Wilcoxon-test), Q value = 0.25
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 435 | 1.8 (15.9) |
8P GAIN MUTATED | 58 | 1.4 (4.3) |
8P GAIN WILD-TYPE | 377 | 1.8 (17.1) |
P value = 0.0701 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
8Q GAIN MUTATED | 123 | 61.9 (6.4) |
8Q GAIN WILD-TYPE | 358 | 60.7 (6.9) |
P value = 0.00024 (Fisher's exact test), Q value = 0.0034
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
8Q GAIN MUTATED | 30 | 91 | 4 |
8Q GAIN WILD-TYPE | 157 | 197 | 6 |
P value = 0.00092 (Fisher's exact test), Q value = 0.0084
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
8Q GAIN MUTATED | 62 | 53 | 1 | 5 |
8Q GAIN WILD-TYPE | 251 | 91 | 4 | 10 |
P value = 4.66e-08 (Wilcoxon-test), Q value = 4.6e-06
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
8Q GAIN MUTATED | 126 | 8.0 (1.1) |
8Q GAIN WILD-TYPE | 366 | 7.5 (0.9) |
P value = 0.0764 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 435 | 1.8 (15.9) |
8Q GAIN MUTATED | 109 | 4.2 (31.1) |
8Q GAIN WILD-TYPE | 326 | 0.9 (4.0) |
P value = 0.00442 (Wilcoxon-test), Q value = 0.027
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
9P GAIN MUTATED | 34 | 64.3 (5.9) |
9P GAIN WILD-TYPE | 447 | 60.7 (6.8) |
P value = 9e-05 (Fisher's exact test), Q value = 0.0016
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
9P GAIN MUTATED | 2 | 30 | 1 |
9P GAIN WILD-TYPE | 185 | 258 | 9 |
P value = 0.000466 (Fisher's exact test), Q value = 0.0054
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
9P GAIN MUTATED | 18 | 14 |
9P GAIN WILD-TYPE | 325 | 63 |
P value = 0.0131 (Fisher's exact test), Q value = 0.057
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
9P GAIN MUTATED | 14 | 17 | 1 | 0 |
9P GAIN WILD-TYPE | 299 | 127 | 4 | 15 |
P value = 8.33e-05 (Wilcoxon-test), Q value = 0.0015
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
9P GAIN MUTATED | 32 | 0.8 (1.4) |
9P GAIN WILD-TYPE | 370 | 0.4 (1.4) |
P value = 1.04e-06 (Wilcoxon-test), Q value = 5.7e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
9P GAIN MUTATED | 34 | 8.4 (0.9) |
9P GAIN WILD-TYPE | 458 | 7.5 (1.0) |
P value = 0.0124 (Wilcoxon-test), Q value = 0.055
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
9Q GAIN MUTATED | 48 | 63.5 (5.7) |
9Q GAIN WILD-TYPE | 433 | 60.7 (6.9) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
9Q GAIN MUTATED | 3 | 42 | 2 |
9Q GAIN WILD-TYPE | 184 | 246 | 8 |
P value = 1.46e-05 (Fisher's exact test), Q value = 0.00039
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
9Q GAIN MUTATED | 25 | 20 |
9Q GAIN WILD-TYPE | 318 | 57 |
P value = 0.0109 (Fisher's exact test), Q value = 0.052
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
9Q GAIN MUTATED | 21 | 23 | 1 | 1 |
9Q GAIN WILD-TYPE | 292 | 121 | 4 | 14 |
P value = 5.43e-07 (Wilcoxon-test), Q value = 3.7e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
9Q GAIN MUTATED | 45 | 1.3 (2.6) |
9Q GAIN WILD-TYPE | 357 | 0.3 (1.1) |
P value = 2.59e-08 (Wilcoxon-test), Q value = 3.8e-06
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
9Q GAIN MUTATED | 48 | 8.4 (0.9) |
9Q GAIN WILD-TYPE | 444 | 7.5 (1.0) |
P value = 0.0288 (Wilcoxon-test), Q value = 0.1
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
10P GAIN MUTATED | 14 | 1.2 (2.9) |
10P GAIN WILD-TYPE | 388 | 0.4 (1.3) |
P value = 0.00263 (Wilcoxon-test), Q value = 0.019
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
10P GAIN MUTATED | 15 | 8.4 (0.9) |
10P GAIN WILD-TYPE | 477 | 7.6 (1.0) |
P value = 0.0677 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
10Q GAIN MUTATED | 13 | 1.5 (3.3) |
10Q GAIN WILD-TYPE | 389 | 0.4 (1.2) |
P value = 0.0259 (Wilcoxon-test), Q value = 0.096
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
10Q GAIN MUTATED | 14 | 8.2 (1.0) |
10Q GAIN WILD-TYPE | 478 | 7.6 (1.0) |
P value = 0.0288 (Wilcoxon-test), Q value = 0.1
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
11P GAIN MUTATED | 27 | 63.4 (6.1) |
11P GAIN WILD-TYPE | 454 | 60.8 (6.8) |
P value = 0.00163 (Fisher's exact test), Q value = 0.013
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
11P GAIN MUTATED | 3 | 22 | 2 |
11P GAIN WILD-TYPE | 184 | 266 | 8 |
P value = 0.00293 (Fisher's exact test), Q value = 0.02
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
11P GAIN MUTATED | 15 | 11 |
11P GAIN WILD-TYPE | 328 | 66 |
P value = 0.00861 (Fisher's exact test), Q value = 0.043
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
11P GAIN MUTATED | 10 | 15 | 0 | 2 |
11P GAIN WILD-TYPE | 303 | 129 | 5 | 13 |
P value = 0.00107 (Wilcoxon-test), Q value = 0.0093
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
11P GAIN MUTATED | 26 | 0.8 (1.5) |
11P GAIN WILD-TYPE | 376 | 0.4 (1.4) |
P value = 1.4e-05 (Wilcoxon-test), Q value = 0.00039
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
11P GAIN MUTATED | 27 | 8.5 (1.0) |
11P GAIN WILD-TYPE | 465 | 7.6 (1.0) |
P value = 0.033 (Wilcoxon-test), Q value = 0.12
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
11Q GAIN MUTATED | 30 | 63.3 (6.2) |
11Q GAIN WILD-TYPE | 451 | 60.8 (6.8) |
P value = 0.00274 (Fisher's exact test), Q value = 0.019
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
11Q GAIN MUTATED | 4 | 24 | 2 |
11Q GAIN WILD-TYPE | 183 | 264 | 8 |
P value = 0.00232 (Fisher's exact test), Q value = 0.017
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
11Q GAIN MUTATED | 17 | 12 |
11Q GAIN WILD-TYPE | 326 | 65 |
P value = 0.0122 (Fisher's exact test), Q value = 0.055
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
11Q GAIN MUTATED | 12 | 16 | 0 | 2 |
11Q GAIN WILD-TYPE | 301 | 128 | 5 | 13 |
P value = 0.000622 (Wilcoxon-test), Q value = 0.0063
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
11Q GAIN MUTATED | 28 | 0.8 (1.4) |
11Q GAIN WILD-TYPE | 374 | 0.4 (1.4) |
P value = 2.11e-06 (Wilcoxon-test), Q value = 8.8e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
11Q GAIN MUTATED | 30 | 8.5 (0.9) |
11Q GAIN WILD-TYPE | 462 | 7.6 (1.0) |
P value = 0.00652 (Wilcoxon-test), Q value = 0.034
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
12P GAIN MUTATED | 15 | 65.7 (5.4) |
12P GAIN WILD-TYPE | 466 | 60.8 (6.8) |
P value = 0.00171 (Fisher's exact test), Q value = 0.013
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
12P GAIN MUTATED | 0 | 15 | 0 |
12P GAIN WILD-TYPE | 187 | 273 | 10 |
P value = 0.0499 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
12P GAIN MUTATED | 7 | 5 |
12P GAIN WILD-TYPE | 336 | 72 |
P value = 0.0772 (Fisher's exact test), Q value = 0.22
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
12P GAIN MUTATED | 9 | 4 |
12P GAIN WILD-TYPE | 381 | 55 |
P value = 0.0029 (Fisher's exact test), Q value = 0.02
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
12P GAIN MUTATED | 4 | 10 | 1 | 0 |
12P GAIN WILD-TYPE | 309 | 134 | 4 | 15 |
P value = 0.00846 (Wilcoxon-test), Q value = 0.043
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
12P GAIN MUTATED | 12 | 1.1 (2.0) |
12P GAIN WILD-TYPE | 390 | 0.4 (1.3) |
P value = 3.13e-06 (Wilcoxon-test), Q value = 0.00011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
12P GAIN MUTATED | 15 | 8.9 (0.6) |
12P GAIN WILD-TYPE | 477 | 7.6 (1.0) |
P value = 0.0399 (Wilcoxon-test), Q value = 0.13
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
12Q GAIN MUTATED | 18 | 64.4 (5.8) |
12Q GAIN WILD-TYPE | 463 | 60.8 (6.8) |
P value = 0.00392 (Fisher's exact test), Q value = 0.025
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
12Q GAIN MUTATED | 1 | 16 | 1 |
12Q GAIN WILD-TYPE | 186 | 272 | 9 |
P value = 0.039 (Fisher's exact test), Q value = 0.13
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
12Q GAIN MUTATED | 9 | 6 |
12Q GAIN WILD-TYPE | 334 | 71 |
P value = 0.0111 (Fisher's exact test), Q value = 0.052
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
12Q GAIN MUTATED | 10 | 6 |
12Q GAIN WILD-TYPE | 380 | 53 |
P value = 9e-05 (Fisher's exact test), Q value = 0.0016
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
12Q GAIN MUTATED | 3 | 14 | 1 | 0 |
12Q GAIN WILD-TYPE | 310 | 130 | 4 | 15 |
P value = 0.00502 (Wilcoxon-test), Q value = 0.029
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
12Q GAIN MUTATED | 14 | 1.0 (1.8) |
12Q GAIN WILD-TYPE | 388 | 0.4 (1.3) |
P value = 1.9e-06 (Wilcoxon-test), Q value = 8.5e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
12Q GAIN MUTATED | 18 | 8.8 (0.7) |
12Q GAIN WILD-TYPE | 474 | 7.6 (1.0) |
P value = 0.0293 (Wilcoxon-test), Q value = 0.11
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
14Q GAIN MUTATED | 10 | 65.2 (5.4) |
14Q GAIN WILD-TYPE | 471 | 60.9 (6.8) |
P value = 0.00277 (Fisher's exact test), Q value = 0.019
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
14Q GAIN MUTATED | 4 | 5 |
14Q GAIN WILD-TYPE | 386 | 54 |
P value = 0.0452 (Fisher's exact test), Q value = 0.15
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
14Q GAIN MUTATED | 3 | 6 | 0 | 1 |
14Q GAIN WILD-TYPE | 310 | 138 | 5 | 14 |
P value = 0.00366 (Wilcoxon-test), Q value = 0.023
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
14Q GAIN MUTATED | 10 | 8.5 (0.7) |
14Q GAIN WILD-TYPE | 482 | 7.6 (1.0) |
P value = 0.00071 (Fisher's exact test), Q value = 0.0069
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
16P GAIN MUTATED | 3 | 28 | 1 |
16P GAIN WILD-TYPE | 184 | 260 | 9 |
P value = 0.00232 (Fisher's exact test), Q value = 0.017
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
16P GAIN MUTATED | 17 | 12 |
16P GAIN WILD-TYPE | 326 | 65 |
P value = 0.00141 (Wilcoxon-test), Q value = 0.011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
16P GAIN MUTATED | 27 | 0.8 (1.6) |
16P GAIN WILD-TYPE | 375 | 0.4 (1.3) |
P value = 2.98e-06 (Wilcoxon-test), Q value = 0.00011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
16P GAIN MUTATED | 32 | 8.5 (1.0) |
16P GAIN WILD-TYPE | 460 | 7.5 (1.0) |
P value = 0.0717 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 435 | 1.8 (15.9) |
16P GAIN MUTATED | 28 | 1.1 (2.4) |
16P GAIN WILD-TYPE | 407 | 1.8 (16.5) |
P value = 0.0118 (Wilcoxon-test), Q value = 0.054
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
16Q GAIN MUTATED | 7 | 67.0 (3.9) |
16Q GAIN WILD-TYPE | 474 | 60.9 (6.8) |
P value = 0.0168 (Fisher's exact test), Q value = 0.071
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
17P GAIN MUTATED | 0 | 7 | 1 |
17P GAIN WILD-TYPE | 187 | 281 | 9 |
P value = 0.00652 (Fisher's exact test), Q value = 0.034
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
17P GAIN MUTATED | 3 | 5 |
17P GAIN WILD-TYPE | 340 | 72 |
P value = 0.0745 (Fisher's exact test), Q value = 0.21
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
17P GAIN MUTATED | 5 | 3 |
17P GAIN WILD-TYPE | 385 | 56 |
P value = 0.00128 (Wilcoxon-test), Q value = 0.011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
17P GAIN MUTATED | 8 | 2.1 (3.7) |
17P GAIN WILD-TYPE | 394 | 0.4 (1.3) |
P value = 0.0553 (Wilcoxon-test), Q value = 0.17
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
17P GAIN MUTATED | 8 | 8.4 (1.2) |
17P GAIN WILD-TYPE | 484 | 7.6 (1.0) |
P value = 0.00451 (Fisher's exact test), Q value = 0.027
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
17Q GAIN MUTATED | 0 | 10 | 1 |
17Q GAIN WILD-TYPE | 187 | 278 | 9 |
P value = 0.00675 (Fisher's exact test), Q value = 0.035
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
17Q GAIN MUTATED | 5 | 6 |
17Q GAIN WILD-TYPE | 338 | 71 |
P value = 0.00258 (Wilcoxon-test), Q value = 0.018
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
17Q GAIN MUTATED | 11 | 1.6 (3.2) |
17Q GAIN WILD-TYPE | 391 | 0.4 (1.3) |
P value = 0.0706 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
17Q GAIN MUTATED | 11 | 8.2 (1.1) |
17Q GAIN WILD-TYPE | 481 | 7.6 (1.0) |
P value = 0.00995 (Wilcoxon-test), Q value = 0.049
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
18P GAIN MUTATED | 19 | 64.9 (6.2) |
18P GAIN WILD-TYPE | 462 | 60.8 (6.8) |
P value = 0.00236 (Fisher's exact test), Q value = 0.017
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
18P GAIN MUTATED | 1 | 17 | 1 |
18P GAIN WILD-TYPE | 186 | 271 | 9 |
P value = 0.00535 (Fisher's exact test), Q value = 0.031
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
18P GAIN MUTATED | 9 | 8 |
18P GAIN WILD-TYPE | 334 | 69 |
P value = 0.00558 (Wilcoxon-test), Q value = 0.031
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
18P GAIN MUTATED | 17 | 1.1 (2.6) |
18P GAIN WILD-TYPE | 385 | 0.4 (1.3) |
P value = 0.0765 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
18P GAIN MUTATED | 19 | 8.0 (0.9) |
18P GAIN WILD-TYPE | 473 | 7.6 (1.0) |
P value = 0.0657 (logrank test), Q value = 0.2
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 492 | 9 | 0.8 - 165.2 (30.6) |
18Q GAIN MUTATED | 10 | 1 | 10.6 - 75.9 (47.2) |
18Q GAIN WILD-TYPE | 482 | 8 | 0.8 - 165.2 (30.4) |
P value = 0.0283 (Fisher's exact test), Q value = 0.1
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
18Q GAIN MUTATED | 0 | 10 | 0 |
18Q GAIN WILD-TYPE | 187 | 278 | 10 |
P value = 0.00053 (Fisher's exact test), Q value = 0.0056
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
19P GAIN MUTATED | 0 | 10 | 2 |
19P GAIN WILD-TYPE | 187 | 278 | 8 |
P value = 0.0115 (Fisher's exact test), Q value = 0.053
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
19P GAIN MUTATED | 6 | 6 |
19P GAIN WILD-TYPE | 337 | 71 |
P value = 0.0613 (Fisher's exact test), Q value = 0.19
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
19P GAIN MUTATED | 4 | 8 | 0 | 0 |
19P GAIN WILD-TYPE | 309 | 136 | 5 | 15 |
P value = 0.000926 (Wilcoxon-test), Q value = 0.0084
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
19P GAIN MUTATED | 12 | 1.2 (2.2) |
19P GAIN WILD-TYPE | 390 | 0.4 (1.3) |
P value = 0.000226 (Wilcoxon-test), Q value = 0.0033
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
19P GAIN MUTATED | 12 | 8.8 (0.9) |
19P GAIN WILD-TYPE | 480 | 7.6 (1.0) |
P value = 0.00052 (Fisher's exact test), Q value = 0.0055
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
19Q GAIN MUTATED | 0 | 10 | 2 |
19Q GAIN WILD-TYPE | 187 | 278 | 8 |
P value = 0.0115 (Fisher's exact test), Q value = 0.053
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
19Q GAIN MUTATED | 6 | 6 |
19Q GAIN WILD-TYPE | 337 | 71 |
P value = 0.0622 (Fisher's exact test), Q value = 0.19
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
19Q GAIN MUTATED | 4 | 8 | 0 | 0 |
19Q GAIN WILD-TYPE | 309 | 136 | 5 | 15 |
P value = 0.000926 (Wilcoxon-test), Q value = 0.0084
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
19Q GAIN MUTATED | 12 | 1.2 (2.2) |
19Q GAIN WILD-TYPE | 390 | 0.4 (1.3) |
P value = 0.000226 (Wilcoxon-test), Q value = 0.0033
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
19Q GAIN MUTATED | 12 | 8.8 (0.9) |
19Q GAIN WILD-TYPE | 480 | 7.6 (1.0) |
P value = 0.0474 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
20P GAIN MUTATED | 25 | 63.4 (4.6) |
20P GAIN WILD-TYPE | 456 | 60.8 (6.9) |
P value = 0.00624 (Fisher's exact test), Q value = 0.034
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
20P GAIN MUTATED | 3 | 21 | 1 |
20P GAIN WILD-TYPE | 184 | 267 | 9 |
P value = 0.0495 (Fisher's exact test), Q value = 0.16
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
20P GAIN MUTATED | 15 | 8 |
20P GAIN WILD-TYPE | 328 | 69 |
P value = 0.0116 (Wilcoxon-test), Q value = 0.053
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
20P GAIN MUTATED | 22 | 0.8 (1.4) |
20P GAIN WILD-TYPE | 380 | 0.4 (1.4) |
P value = 0.000516 (Wilcoxon-test), Q value = 0.0055
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
20P GAIN MUTATED | 26 | 8.3 (1.2) |
20P GAIN WILD-TYPE | 466 | 7.6 (1.0) |
P value = 0.00341 (Wilcoxon-test), Q value = 0.022
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
20Q GAIN MUTATED | 28 | 64.4 (4.4) |
20Q GAIN WILD-TYPE | 453 | 60.8 (6.9) |
P value = 0.00023 (Fisher's exact test), Q value = 0.0033
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
20Q GAIN MUTATED | 3 | 23 | 3 |
20Q GAIN WILD-TYPE | 184 | 265 | 7 |
P value = 0.0665 (Fisher's exact test), Q value = 0.2
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
20Q GAIN MUTATED | 18 | 9 |
20Q GAIN WILD-TYPE | 325 | 68 |
P value = 0.0765 (Fisher's exact test), Q value = 0.22
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
20Q GAIN MUTATED | 21 | 7 |
20Q GAIN WILD-TYPE | 369 | 52 |
P value = 0.0434 (Fisher's exact test), Q value = 0.14
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
20Q GAIN MUTATED | 12 | 15 | 0 | 1 |
20Q GAIN WILD-TYPE | 301 | 129 | 5 | 14 |
P value = 0.0132 (Wilcoxon-test), Q value = 0.057
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
20Q GAIN MUTATED | 26 | 0.7 (1.3) |
20Q GAIN WILD-TYPE | 376 | 0.4 (1.4) |
P value = 0.000329 (Wilcoxon-test), Q value = 0.0042
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
20Q GAIN MUTATED | 29 | 8.3 (1.1) |
20Q GAIN WILD-TYPE | 463 | 7.6 (1.0) |
P value = 0.00541 (Wilcoxon-test), Q value = 0.031
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
21Q GAIN MUTATED | 21 | 64.9 (5.4) |
21Q GAIN WILD-TYPE | 460 | 60.8 (6.8) |
P value = 0.0158 (Fisher's exact test), Q value = 0.067
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
21Q GAIN MUTATED | 2 | 19 | 0 |
21Q GAIN WILD-TYPE | 185 | 269 | 10 |
P value = 0.0362 (Fisher's exact test), Q value = 0.12
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
21Q GAIN MUTATED | 13 | 8 |
21Q GAIN WILD-TYPE | 330 | 69 |
P value = 0.00448 (Wilcoxon-test), Q value = 0.027
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
21Q GAIN MUTATED | 21 | 1.2 (2.2) |
21Q GAIN WILD-TYPE | 381 | 0.4 (1.3) |
P value = 5.71e-05 (Wilcoxon-test), Q value = 0.0011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
21Q GAIN MUTATED | 21 | 8.5 (0.9) |
21Q GAIN WILD-TYPE | 471 | 7.6 (1.0) |
P value = 0.0221 (Wilcoxon-test), Q value = 0.083
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
22Q GAIN MUTATED | 4 | 8.8 (0.5) |
22Q GAIN WILD-TYPE | 488 | 7.6 (1.0) |
P value = 0.0195 (Fisher's exact test), Q value = 0.079
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
XP GAIN MUTATED | 0 | 6 | 1 |
XP GAIN WILD-TYPE | 187 | 282 | 9 |
P value = 0.00602 (Fisher's exact test), Q value = 0.033
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
XP GAIN MUTATED | 1 | 5 | 1 | 0 |
XP GAIN WILD-TYPE | 312 | 139 | 4 | 15 |
P value = 0.00501 (Wilcoxon-test), Q value = 0.029
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
XP GAIN MUTATED | 7 | 8.7 (0.8) |
XP GAIN WILD-TYPE | 485 | 7.6 (1.0) |
P value = 0.0192 (Fisher's exact test), Q value = 0.078
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
XQ GAIN MUTATED | 0 | 6 | 1 |
XQ GAIN WILD-TYPE | 187 | 282 | 9 |
P value = 0.00557 (Fisher's exact test), Q value = 0.031
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
XQ GAIN MUTATED | 1 | 5 | 1 | 0 |
XQ GAIN WILD-TYPE | 312 | 139 | 4 | 15 |
P value = 0.00501 (Wilcoxon-test), Q value = 0.029
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
XQ GAIN MUTATED | 7 | 8.7 (0.8) |
XQ GAIN WILD-TYPE | 485 | 7.6 (1.0) |
P value = 0.0246 (Fisher's exact test), Q value = 0.092
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
1P LOSS MUTATED | 3 | 18 | 1 |
1P LOSS WILD-TYPE | 184 | 270 | 9 |
P value = 0.0442 (Fisher's exact test), Q value = 0.14
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
1P LOSS MUTATED | 15 | 6 |
1P LOSS WILD-TYPE | 375 | 53 |
P value = 1.91e-05 (Wilcoxon-test), Q value = 0.00048
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
1P LOSS MUTATED | 22 | 8.5 (0.9) |
1P LOSS WILD-TYPE | 470 | 7.6 (1.0) |
P value = 0.0553 (Fisher's exact test), Q value = 0.17
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
1Q LOSS MUTATED | 1 | 5 | 0 | 0 |
1Q LOSS WILD-TYPE | 312 | 139 | 5 | 15 |
P value = 0.0768 (Wilcoxon-test), Q value = 0.22
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
1Q LOSS MUTATED | 4 | 1.2 (1.5) |
1Q LOSS WILD-TYPE | 398 | 0.4 (1.4) |
P value = 0.0909 (Wilcoxon-test), Q value = 0.25
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
1Q LOSS MUTATED | 6 | 8.3 (1.0) |
1Q LOSS WILD-TYPE | 486 | 7.6 (1.0) |
P value = 0.00694 (Wilcoxon-test), Q value = 0.036
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
2P LOSS MUTATED | 14 | 65.8 (6.0) |
2P LOSS WILD-TYPE | 467 | 60.8 (6.8) |
P value = 0.0132 (Fisher's exact test), Q value = 0.057
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
2P LOSS MUTATED | 1 | 12 | 1 |
2P LOSS WILD-TYPE | 186 | 276 | 9 |
P value = 0.0197 (Wilcoxon-test), Q value = 0.079
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
2Q LOSS MUTATED | 18 | 64.8 (6.5) |
2Q LOSS WILD-TYPE | 463 | 60.8 (6.8) |
P value = 0.0194 (Fisher's exact test), Q value = 0.079
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
2Q LOSS MUTATED | 2 | 15 | 1 |
2Q LOSS WILD-TYPE | 185 | 273 | 9 |
P value = 0.0202 (Wilcoxon-test), Q value = 0.079
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
2Q LOSS MUTATED | 18 | 8.2 (1.0) |
2Q LOSS WILD-TYPE | 474 | 7.6 (1.0) |
P value = 0.00342 (Wilcoxon-test), Q value = 0.022
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
3P LOSS MUTATED | 9 | 8.7 (1.1) |
3P LOSS WILD-TYPE | 483 | 7.6 (1.0) |
P value = 0.00393 (Wilcoxon-test), Q value = 0.025
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
3Q LOSS MUTATED | 5 | 9.0 (0.7) |
3Q LOSS WILD-TYPE | 487 | 7.6 (1.0) |
P value = 0.0497 (Fisher's exact test), Q value = 0.16
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
4P LOSS MUTATED | 4 | 18 | 1 |
4P LOSS WILD-TYPE | 183 | 270 | 9 |
P value = 0.000159 (Fisher's exact test), Q value = 0.0025
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
4P LOSS MUTATED | 11 | 12 |
4P LOSS WILD-TYPE | 332 | 65 |
P value = 0.0442 (Fisher's exact test), Q value = 0.14
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
4P LOSS MUTATED | 15 | 6 |
4P LOSS WILD-TYPE | 375 | 53 |
P value = 0.0188 (Fisher's exact test), Q value = 0.077
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
4P LOSS MUTATED | 8 | 13 | 0 | 1 |
4P LOSS WILD-TYPE | 305 | 131 | 5 | 14 |
P value = 1.13e-05 (Wilcoxon-test), Q value = 0.00032
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
4P LOSS MUTATED | 22 | 1.3 (1.7) |
4P LOSS WILD-TYPE | 380 | 0.4 (1.3) |
P value = 1.51e-06 (Wilcoxon-test), Q value = 7.8e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
4P LOSS MUTATED | 23 | 8.6 (0.7) |
4P LOSS WILD-TYPE | 469 | 7.6 (1.0) |
P value = 0.015 (Fisher's exact test), Q value = 0.065
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
4Q LOSS MUTATED | 9 | 7 |
4Q LOSS WILD-TYPE | 334 | 70 |
P value = 0.0111 (Fisher's exact test), Q value = 0.052
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
4Q LOSS MUTATED | 10 | 6 |
4Q LOSS WILD-TYPE | 380 | 53 |
P value = 0.0361 (Fisher's exact test), Q value = 0.12
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
4Q LOSS MUTATED | 5 | 10 | 0 | 0 |
4Q LOSS WILD-TYPE | 308 | 134 | 5 | 15 |
P value = 0.000556 (Wilcoxon-test), Q value = 0.0058
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
4Q LOSS MUTATED | 15 | 1.2 (1.7) |
4Q LOSS WILD-TYPE | 387 | 0.4 (1.3) |
P value = 5.89e-06 (Wilcoxon-test), Q value = 2e-04
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
4Q LOSS MUTATED | 16 | 8.8 (0.6) |
4Q LOSS WILD-TYPE | 476 | 7.6 (1.0) |
P value = 0.00047 (Fisher's exact test), Q value = 0.0054
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
5P LOSS MUTATED | 0 | 10 | 2 |
5P LOSS WILD-TYPE | 187 | 278 | 8 |
P value = 0.00498 (Fisher's exact test), Q value = 0.029
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
5P LOSS MUTATED | 5 | 5 |
5P LOSS WILD-TYPE | 385 | 54 |
P value = 0.0619 (Fisher's exact test), Q value = 0.19
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
5P LOSS MUTATED | 4 | 8 | 0 | 0 |
5P LOSS WILD-TYPE | 309 | 136 | 5 | 15 |
P value = 5.56e-05 (Wilcoxon-test), Q value = 0.0011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
5P LOSS MUTATED | 12 | 8.8 (0.7) |
5P LOSS WILD-TYPE | 480 | 7.6 (1.0) |
P value = 3e-05 (Fisher's exact test), Q value = 0.00066
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
5Q LOSS MUTATED | 2 | 17 | 4 |
5Q LOSS WILD-TYPE | 185 | 271 | 6 |
P value = 0.00051 (Fisher's exact test), Q value = 0.0055
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
5Q LOSS MUTATED | 11 | 11 |
5Q LOSS WILD-TYPE | 332 | 66 |
P value = 0.00925 (Fisher's exact test), Q value = 0.046
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
5Q LOSS MUTATED | 13 | 7 |
5Q LOSS WILD-TYPE | 377 | 52 |
P value = 6.25e-05 (Wilcoxon-test), Q value = 0.0011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
5Q LOSS MUTATED | 20 | 1.0 (1.5) |
5Q LOSS WILD-TYPE | 382 | 0.4 (1.4) |
P value = 1.92e-06 (Wilcoxon-test), Q value = 8.5e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
5Q LOSS MUTATED | 23 | 8.6 (0.8) |
5Q LOSS WILD-TYPE | 469 | 7.6 (1.0) |
P value = 0.00201 (Fisher's exact test), Q value = 0.015
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
6P LOSS MUTATED | 4 | 18 | 3 |
6P LOSS WILD-TYPE | 183 | 270 | 7 |
P value = 0.00364 (Fisher's exact test), Q value = 0.023
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
6P LOSS MUTATED | 13 | 10 |
6P LOSS WILD-TYPE | 330 | 67 |
P value = 0.0897 (Fisher's exact test), Q value = 0.25
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
6P LOSS MUTATED | 11 | 13 | 0 | 0 |
6P LOSS WILD-TYPE | 302 | 131 | 5 | 15 |
P value = 0.00254 (Wilcoxon-test), Q value = 0.018
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
6P LOSS MUTATED | 22 | 0.6 (0.8) |
6P LOSS WILD-TYPE | 380 | 0.4 (1.4) |
P value = 9.2e-06 (Wilcoxon-test), Q value = 0.00029
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
6P LOSS MUTATED | 26 | 8.5 (0.9) |
6P LOSS WILD-TYPE | 466 | 7.6 (1.0) |
P value = 0.0475 (logrank test), Q value = 0.15
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 492 | 9 | 0.8 - 165.2 (30.6) |
6Q LOSS MUTATED | 41 | 2 | 1.0 - 75.8 (29.9) |
6Q LOSS WILD-TYPE | 451 | 7 | 0.8 - 165.2 (30.7) |
P value = 0.00159 (Fisher's exact test), Q value = 0.013
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
6Q LOSS MUTATED | 7 | 30 | 3 |
6Q LOSS WILD-TYPE | 180 | 258 | 7 |
P value = 0.00746 (Fisher's exact test), Q value = 0.038
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
6Q LOSS MUTATED | 25 | 14 |
6Q LOSS WILD-TYPE | 318 | 63 |
P value = 0.0209 (Fisher's exact test), Q value = 0.081
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
6Q LOSS MUTATED | 28 | 10 |
6Q LOSS WILD-TYPE | 362 | 49 |
P value = 0.00086 (Wilcoxon-test), Q value = 0.0081
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
6Q LOSS MUTATED | 38 | 0.8 (1.3) |
6Q LOSS WILD-TYPE | 364 | 0.4 (1.4) |
P value = 9.51e-09 (Wilcoxon-test), Q value = 2.8e-06
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
6Q LOSS MUTATED | 41 | 8.5 (0.9) |
6Q LOSS WILD-TYPE | 451 | 7.5 (1.0) |
P value = 0.00012 (Fisher's exact test), Q value = 0.002
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
8P LOSS MUTATED | 45 | 121 | 3 |
8P LOSS WILD-TYPE | 142 | 167 | 7 |
P value = 0.0528 (Wilcoxon-test), Q value = 0.16
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
8P LOSS MUTATED | 141 | 0.6 (1.8) |
8P LOSS WILD-TYPE | 261 | 0.3 (1.0) |
P value = 0.000979 (logrank test), Q value = 0.0087
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 492 | 9 | 0.8 - 165.2 (30.6) |
8Q LOSS MUTATED | 21 | 2 | 1.0 - 109.2 (26.4) |
8Q LOSS WILD-TYPE | 471 | 7 | 0.8 - 165.2 (30.7) |
P value = 0.00112 (Fisher's exact test), Q value = 0.0096
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
8Q LOSS MUTATED | 1 | 19 | 1 |
8Q LOSS WILD-TYPE | 186 | 269 | 9 |
P value = 0.00446 (Fisher's exact test), Q value = 0.027
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
8Q LOSS MUTATED | 11 | 9 |
8Q LOSS WILD-TYPE | 332 | 68 |
P value = 0.0585 (Fisher's exact test), Q value = 0.18
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
8Q LOSS MUTATED | 12 | 5 |
8Q LOSS WILD-TYPE | 378 | 54 |
P value = 0.000221 (Wilcoxon-test), Q value = 0.0033
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
8Q LOSS MUTATED | 18 | 1.5 (2.2) |
8Q LOSS WILD-TYPE | 384 | 0.4 (1.3) |
P value = 0.0419 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
8Q LOSS MUTATED | 21 | 8.0 (1.0) |
8Q LOSS WILD-TYPE | 471 | 7.6 (1.0) |
P value = 0.0204 (Fisher's exact test), Q value = 0.079
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
9P LOSS MUTATED | 4 | 15 | 2 |
9P LOSS WILD-TYPE | 183 | 273 | 8 |
P value = 0.0696 (Fisher's exact test), Q value = 0.21
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
9P LOSS MUTATED | 13 | 7 |
9P LOSS WILD-TYPE | 330 | 70 |
P value = 0.0217 (Wilcoxon-test), Q value = 0.083
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
9P LOSS MUTATED | 18 | 1.4 (2.9) |
9P LOSS WILD-TYPE | 384 | 0.4 (1.2) |
P value = 0.00595 (Wilcoxon-test), Q value = 0.033
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
9P LOSS MUTATED | 21 | 8.2 (1.1) |
9P LOSS WILD-TYPE | 471 | 7.6 (1.0) |
P value = 0.0909 (Fisher's exact test), Q value = 0.25
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
9Q LOSS MUTATED | 6 | 4 |
9Q LOSS WILD-TYPE | 337 | 73 |
P value = 0.071 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
9Q LOSS MUTATED | 10 | 1.9 (3.7) |
9Q LOSS WILD-TYPE | 392 | 0.4 (1.2) |
P value = 0.013 (Wilcoxon-test), Q value = 0.057
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
9Q LOSS MUTATED | 11 | 8.4 (1.0) |
9Q LOSS WILD-TYPE | 481 | 7.6 (1.0) |
P value = 2e-05 (Fisher's exact test), Q value = 0.00048
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
10P LOSS MUTATED | 7 | 28 | 6 |
10P LOSS WILD-TYPE | 180 | 260 | 4 |
P value = 0.000292 (Fisher's exact test), Q value = 0.0039
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
10P LOSS MUTATED | 22 | 16 |
10P LOSS WILD-TYPE | 321 | 61 |
P value = 0.0175 (Fisher's exact test), Q value = 0.072
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
10P LOSS MUTATED | 19 | 20 | 1 | 0 |
10P LOSS WILD-TYPE | 294 | 124 | 4 | 15 |
P value = 2.63e-05 (Wilcoxon-test), Q value = 0.00061
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
10P LOSS MUTATED | 37 | 1.3 (2.2) |
10P LOSS WILD-TYPE | 365 | 0.3 (1.2) |
P value = 2.96e-06 (Wilcoxon-test), Q value = 0.00011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
10P LOSS MUTATED | 41 | 8.3 (1.0) |
10P LOSS WILD-TYPE | 451 | 7.5 (1.0) |
P value = 2e-04 (Fisher's exact test), Q value = 0.003
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
10Q LOSS MUTATED | 9 | 29 | 5 |
10Q LOSS WILD-TYPE | 178 | 259 | 5 |
P value = 0.000381 (Fisher's exact test), Q value = 0.0047
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
10Q LOSS MUTATED | 24 | 17 |
10Q LOSS WILD-TYPE | 319 | 60 |
P value = 0.00633 (Fisher's exact test), Q value = 0.034
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
10Q LOSS MUTATED | 19 | 23 | 0 | 0 |
10Q LOSS WILD-TYPE | 294 | 121 | 5 | 15 |
P value = 4.66e-05 (Wilcoxon-test), Q value = 0.00095
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
10Q LOSS MUTATED | 40 | 1.1 (1.9) |
10Q LOSS WILD-TYPE | 362 | 0.4 (1.3) |
P value = 3.96e-08 (Wilcoxon-test), Q value = 4.4e-06
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
10Q LOSS MUTATED | 43 | 8.4 (0.9) |
10Q LOSS WILD-TYPE | 449 | 7.5 (1.0) |
P value = 0.00506 (logrank test), Q value = 0.029
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 492 | 9 | 0.8 - 165.2 (30.6) |
11P LOSS MUTATED | 8 | 1 | 4.3 - 67.5 (26.5) |
11P LOSS WILD-TYPE | 484 | 8 | 0.8 - 165.2 (30.8) |
P value = 0.0749 (Fisher's exact test), Q value = 0.22
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
11P LOSS MUTATED | 1 | 5 | 1 |
11P LOSS WILD-TYPE | 186 | 283 | 9 |
P value = 0.0196 (Wilcoxon-test), Q value = 0.079
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
11P LOSS MUTATED | 8 | 8.5 (1.1) |
11P LOSS WILD-TYPE | 484 | 7.6 (1.0) |
P value = 0.0274 (Fisher's exact test), Q value = 0.1
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
11Q LOSS MUTATED | 0 | 4 | 1 |
11Q LOSS WILD-TYPE | 187 | 284 | 9 |
P value = 0.0341 (Wilcoxon-test), Q value = 0.12
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
11Q LOSS MUTATED | 5 | 8.6 (0.9) |
11Q LOSS WILD-TYPE | 487 | 7.6 (1.0) |
P value = 0.00565 (Fisher's exact test), Q value = 0.031
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
12P LOSS MUTATED | 10 | 34 | 3 |
12P LOSS WILD-TYPE | 177 | 254 | 7 |
P value = 0.000521 (Fisher's exact test), Q value = 0.0055
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
12P LOSS MUTATED | 29 | 18 |
12P LOSS WILD-TYPE | 314 | 59 |
P value = 0.000399 (Wilcoxon-test), Q value = 0.0048
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
12P LOSS MUTATED | 45 | 0.7 (1.1) |
12P LOSS WILD-TYPE | 357 | 0.4 (1.4) |
P value = 0.000505 (Wilcoxon-test), Q value = 0.0055
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
12P LOSS MUTATED | 47 | 8.1 (1.0) |
12P LOSS WILD-TYPE | 445 | 7.6 (1.0) |
P value = 0.0171 (Fisher's exact test), Q value = 0.072
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
12Q LOSS MUTATED | 12 | 8 |
12Q LOSS WILD-TYPE | 331 | 69 |
P value = 0.0158 (Wilcoxon-test), Q value = 0.067
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
12Q LOSS MUTATED | 19 | 0.7 (1.3) |
12Q LOSS WILD-TYPE | 383 | 0.4 (1.4) |
P value = 0.00135 (Wilcoxon-test), Q value = 0.011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
12Q LOSS MUTATED | 20 | 8.3 (1.0) |
12Q LOSS WILD-TYPE | 472 | 7.6 (1.0) |
P value = 0.0673 (Wilcoxon-test), Q value = 0.2
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
13Q LOSS MUTATED | 76 | 62.2 (6.7) |
13Q LOSS WILD-TYPE | 405 | 60.7 (6.8) |
P value = 0.00067 (Fisher's exact test), Q value = 0.0067
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
13Q LOSS MUTATED | 16 | 58 | 3 |
13Q LOSS WILD-TYPE | 171 | 230 | 7 |
P value = 0.0121 (Fisher's exact test), Q value = 0.055
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
13Q LOSS MUTATED | 51 | 21 |
13Q LOSS WILD-TYPE | 292 | 56 |
P value = 0.0262 (Fisher's exact test), Q value = 0.097
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
13Q LOSS MUTATED | 39 | 33 | 0 | 3 |
13Q LOSS WILD-TYPE | 274 | 111 | 5 | 12 |
P value = 0.0048 (Wilcoxon-test), Q value = 0.029
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
13Q LOSS MUTATED | 69 | 0.8 (1.7) |
13Q LOSS WILD-TYPE | 333 | 0.4 (1.3) |
P value = 1.65e-11 (Wilcoxon-test), Q value = 1.4e-08
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
13Q LOSS MUTATED | 78 | 8.3 (0.9) |
13Q LOSS WILD-TYPE | 414 | 7.5 (1.0) |
P value = 0.00051 (Fisher's exact test), Q value = 0.0055
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
14Q LOSS MUTATED | 2 | 21 | 2 |
14Q LOSS WILD-TYPE | 185 | 267 | 8 |
P value = 0.0296 (Fisher's exact test), Q value = 0.11
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
14Q LOSS MUTATED | 16 | 9 |
14Q LOSS WILD-TYPE | 327 | 68 |
P value = 0.0175 (Fisher's exact test), Q value = 0.072
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
14Q LOSS MUTATED | 9 | 14 | 0 | 1 |
14Q LOSS WILD-TYPE | 304 | 130 | 5 | 14 |
P value = 0.0336 (Wilcoxon-test), Q value = 0.12
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
14Q LOSS MUTATED | 25 | 0.6 (1.0) |
14Q LOSS WILD-TYPE | 377 | 0.4 (1.4) |
P value = 4e-04 (Wilcoxon-test), Q value = 0.0048
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
14Q LOSS MUTATED | 25 | 8.3 (0.9) |
14Q LOSS WILD-TYPE | 467 | 7.6 (1.0) |
P value = 0.0174 (Wilcoxon-test), Q value = 0.072
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
15Q LOSS MUTATED | 35 | 63.7 (6.3) |
15Q LOSS WILD-TYPE | 446 | 60.8 (6.8) |
P value = 1e-05 (Fisher's exact test), Q value = 0.00029
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
15Q LOSS MUTATED | 1 | 31 | 3 |
15Q LOSS WILD-TYPE | 186 | 257 | 7 |
P value = 0.00298 (Fisher's exact test), Q value = 0.02
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
15Q LOSS MUTATED | 19 | 13 |
15Q LOSS WILD-TYPE | 324 | 64 |
P value = 0.000925 (Wilcoxon-test), Q value = 0.0084
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
15Q LOSS MUTATED | 32 | 0.9 (1.5) |
15Q LOSS WILD-TYPE | 370 | 0.4 (1.3) |
P value = 7.26e-06 (Wilcoxon-test), Q value = 0.00024
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
15Q LOSS MUTATED | 35 | 8.4 (1.0) |
15Q LOSS WILD-TYPE | 457 | 7.6 (1.0) |
P value = 0.00068 (Fisher's exact test), Q value = 0.0067
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
16Q LOSS MUTATED | 25 | 78 | 3 |
16Q LOSS WILD-TYPE | 162 | 210 | 7 |
P value = 0.0727 (Fisher's exact test), Q value = 0.21
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
16Q LOSS MUTATED | 73 | 24 |
16Q LOSS WILD-TYPE | 270 | 53 |
P value = 0.0153 (Fisher's exact test), Q value = 0.066
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
16Q LOSS MUTATED | 57 | 44 | 0 | 2 |
16Q LOSS WILD-TYPE | 256 | 100 | 5 | 13 |
P value = 0.0278 (Wilcoxon-test), Q value = 0.1
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
16Q LOSS MUTATED | 92 | 0.6 (1.4) |
16Q LOSS WILD-TYPE | 310 | 0.4 (1.4) |
P value = 9.76e-07 (Wilcoxon-test), Q value = 5.7e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
16Q LOSS MUTATED | 107 | 8.0 (1.0) |
16Q LOSS WILD-TYPE | 385 | 7.5 (1.0) |
P value = 0.00093 (Fisher's exact test), Q value = 0.0084
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
17P LOSS MUTATED | 15 | 58 | 1 |
17P LOSS WILD-TYPE | 172 | 230 | 9 |
P value = 0.011 (Fisher's exact test), Q value = 0.052
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
17P LOSS MUTATED | 50 | 21 |
17P LOSS WILD-TYPE | 293 | 56 |
P value = 0.0404 (Fisher's exact test), Q value = 0.14
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
17P LOSS MUTATED | 40 | 33 | 0 | 2 |
17P LOSS WILD-TYPE | 273 | 111 | 5 | 13 |
P value = 0.000816 (Wilcoxon-test), Q value = 0.0078
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
17P LOSS MUTATED | 67 | 0.9 (1.7) |
17P LOSS WILD-TYPE | 335 | 0.3 (1.3) |
P value = 2.91e-06 (Wilcoxon-test), Q value = 0.00011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
17P LOSS MUTATED | 76 | 8.1 (1.0) |
17P LOSS WILD-TYPE | 416 | 7.5 (1.0) |
P value = 0.0418 (Wilcoxon-test), Q value = 0.14
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 435 | 1.8 (15.9) |
17P LOSS MUTATED | 67 | 6.8 (39.7) |
17P LOSS WILD-TYPE | 368 | 0.8 (3.4) |
P value = 0.0771 (logrank test), Q value = 0.22
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 492 | 9 | 0.8 - 165.2 (30.6) |
17Q LOSS MUTATED | 20 | 2 | 4.8 - 115.1 (38.3) |
17Q LOSS WILD-TYPE | 472 | 7 | 0.8 - 165.2 (30.4) |
P value = 0.0199 (Fisher's exact test), Q value = 0.079
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
17Q LOSS MUTATED | 2 | 17 | 0 |
17Q LOSS WILD-TYPE | 185 | 271 | 10 |
P value = 0.0346 (Fisher's exact test), Q value = 0.12
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
17Q LOSS MUTATED | 7 | 11 | 0 | 1 |
17Q LOSS WILD-TYPE | 306 | 133 | 5 | 14 |
P value = 0.00332 (Wilcoxon-test), Q value = 0.022
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
17Q LOSS MUTATED | 20 | 8.3 (1.0) |
17Q LOSS WILD-TYPE | 472 | 7.6 (1.0) |
P value = 0.00611 (Fisher's exact test), Q value = 0.033
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
18P LOSS MUTATED | 17 | 46 | 4 |
18P LOSS WILD-TYPE | 170 | 242 | 6 |
P value = 0.00787 (Fisher's exact test), Q value = 0.04
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
18P LOSS MUTATED | 34 | 31 | 0 | 0 |
18P LOSS WILD-TYPE | 279 | 113 | 5 | 15 |
P value = 0.0456 (Wilcoxon-test), Q value = 0.15
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
18P LOSS MUTATED | 60 | 0.7 (1.5) |
18P LOSS WILD-TYPE | 342 | 0.4 (1.3) |
P value = 7.39e-07 (Wilcoxon-test), Q value = 4.6e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
18P LOSS MUTATED | 67 | 8.2 (1.0) |
18P LOSS WILD-TYPE | 425 | 7.5 (1.0) |
P value = 0.0013 (Fisher's exact test), Q value = 0.011
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
18Q LOSS MUTATED | 24 | 71 | 4 |
18Q LOSS WILD-TYPE | 163 | 217 | 6 |
P value = 0.000362 (Fisher's exact test), Q value = 0.0046
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
18Q LOSS MUTATED | 62 | 29 |
18Q LOSS WILD-TYPE | 281 | 48 |
P value = 0.0368 (Fisher's exact test), Q value = 0.13
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
18Q LOSS MUTATED | 72 | 18 |
18Q LOSS WILD-TYPE | 318 | 41 |
P value = 3e-05 (Fisher's exact test), Q value = 0.00066
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
18Q LOSS MUTATED | 47 | 49 | 0 | 2 |
18Q LOSS WILD-TYPE | 266 | 95 | 5 | 13 |
P value = 4.61e-05 (Wilcoxon-test), Q value = 0.00095
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
18Q LOSS MUTATED | 87 | 0.9 (2.3) |
18Q LOSS WILD-TYPE | 315 | 0.3 (0.9) |
P value = 2.12e-08 (Wilcoxon-test), Q value = 3.8e-06
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
18Q LOSS MUTATED | 100 | 8.1 (1.0) |
18Q LOSS WILD-TYPE | 392 | 7.5 (1.0) |
P value = 0.0103 (Wilcoxon-test), Q value = 0.05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
19P LOSS MUTATED | 19 | 64.6 (5.8) |
19P LOSS WILD-TYPE | 462 | 60.8 (6.8) |
P value = 0.01 (Wilcoxon-test), Q value = 0.049
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
19P LOSS MUTATED | 19 | 8.2 (1.0) |
19P LOSS WILD-TYPE | 473 | 7.6 (1.0) |
P value = 0.0174 (Wilcoxon-test), Q value = 0.072
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
19Q LOSS MUTATED | 18 | 64.4 (6.0) |
19Q LOSS WILD-TYPE | 463 | 60.8 (6.8) |
P value = 0.0202 (Wilcoxon-test), Q value = 0.079
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
19Q LOSS MUTATED | 18 | 8.2 (1.0) |
19Q LOSS WILD-TYPE | 474 | 7.6 (1.0) |
P value = 0.0523 (Fisher's exact test), Q value = 0.16
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
20P LOSS MUTATED | 3 | 15 | 1 |
20P LOSS WILD-TYPE | 184 | 273 | 9 |
P value = 0.0218 (Fisher's exact test), Q value = 0.083
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
20P LOSS MUTATED | 10 | 7 |
20P LOSS WILD-TYPE | 333 | 70 |
P value = 0.073 (Fisher's exact test), Q value = 0.21
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
20P LOSS MUTATED | 13 | 5 |
20P LOSS WILD-TYPE | 377 | 54 |
P value = 0.00523 (Wilcoxon-test), Q value = 0.03
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
20P LOSS MUTATED | 16 | 1.4 (2.1) |
20P LOSS WILD-TYPE | 386 | 0.4 (1.3) |
P value = 0.0605 (Wilcoxon-test), Q value = 0.18
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
20Q LOSS MUTATED | 8 | 8.2 (0.9) |
20Q LOSS WILD-TYPE | 484 | 7.6 (1.0) |
P value = 0.0024 (Fisher's exact test), Q value = 0.017
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
21Q LOSS MUTATED | 4 | 17 | 3 |
21Q LOSS WILD-TYPE | 183 | 271 | 7 |
P value = 0.00364 (Fisher's exact test), Q value = 0.023
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
21Q LOSS MUTATED | 13 | 10 |
21Q LOSS WILD-TYPE | 330 | 67 |
P value = 0.00138 (Wilcoxon-test), Q value = 0.011
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
21Q LOSS MUTATED | 22 | 1.1 (2.4) |
21Q LOSS WILD-TYPE | 380 | 0.4 (1.3) |
P value = 0.000329 (Wilcoxon-test), Q value = 0.0042
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
21Q LOSS MUTATED | 24 | 8.3 (1.0) |
21Q LOSS WILD-TYPE | 468 | 7.6 (1.0) |
P value = 2e-05 (Fisher's exact test), Q value = 0.00048
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
22Q LOSS MUTATED | 5 | 39 | 2 |
22Q LOSS WILD-TYPE | 182 | 249 | 8 |
P value = 0.000716 (Fisher's exact test), Q value = 0.0069
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
22Q LOSS MUTATED | 27 | 17 |
22Q LOSS WILD-TYPE | 316 | 60 |
P value = 0.0128 (Fisher's exact test), Q value = 0.057
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
22Q LOSS MUTATED | 30 | 11 |
22Q LOSS WILD-TYPE | 360 | 48 |
P value = 0.0101 (Fisher's exact test), Q value = 0.049
nPatients | R0 | R1 | R2 | RX |
---|---|---|---|---|
ALL | 313 | 144 | 5 | 15 |
22Q LOSS MUTATED | 22 | 24 | 0 | 0 |
22Q LOSS WILD-TYPE | 291 | 120 | 5 | 15 |
P value = 0.000565 (Wilcoxon-test), Q value = 0.0058
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
22Q LOSS MUTATED | 43 | 0.9 (2.4) |
22Q LOSS WILD-TYPE | 359 | 0.4 (1.2) |
P value = 3.76e-08 (Wilcoxon-test), Q value = 4.4e-06
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
22Q LOSS MUTATED | 47 | 8.4 (0.9) |
22Q LOSS WILD-TYPE | 445 | 7.5 (1.0) |
P value = 0.0709 (Wilcoxon-test), Q value = 0.21
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 435 | 1.8 (15.9) |
22Q LOSS MUTATED | 41 | 10.5 (50.4) |
22Q LOSS WILD-TYPE | 394 | 0.8 (3.7) |
P value = 0.0422 (logrank test), Q value = 0.14
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 492 | 9 | 0.8 - 165.2 (30.6) |
XP LOSS MUTATED | 38 | 2 | 1.0 - 94.4 (36.2) |
XP LOSS WILD-TYPE | 454 | 7 | 0.8 - 165.2 (30.4) |
P value = 0.0852 (Wilcoxon-test), Q value = 0.24
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
XP LOSS MUTATED | 38 | 62.8 (6.8) |
XP LOSS WILD-TYPE | 443 | 60.8 (6.8) |
P value = 0.00413 (Fisher's exact test), Q value = 0.026
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
XP LOSS MUTATED | 6 | 29 | 2 |
XP LOSS WILD-TYPE | 181 | 259 | 8 |
P value = 0.0111 (Fisher's exact test), Q value = 0.052
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
XP LOSS MUTATED | 23 | 13 |
XP LOSS WILD-TYPE | 320 | 64 |
P value = 0.0336 (Fisher's exact test), Q value = 0.12
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
XP LOSS MUTATED | 26 | 9 |
XP LOSS WILD-TYPE | 364 | 50 |
P value = 0.000414 (Wilcoxon-test), Q value = 0.0049
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
XP LOSS MUTATED | 35 | 1.0 (1.6) |
XP LOSS WILD-TYPE | 367 | 0.4 (1.3) |
P value = 3.01e-07 (Wilcoxon-test), Q value = 2.2e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
XP LOSS MUTATED | 38 | 8.4 (0.9) |
XP LOSS WILD-TYPE | 454 | 7.5 (1.0) |
P value = 0.0221 (Wilcoxon-test), Q value = 0.083
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 435 | 1.8 (15.9) |
XP LOSS MUTATED | 34 | 10.7 (55.2) |
XP LOSS WILD-TYPE | 401 | 1.0 (4.1) |
P value = 0.0422 (logrank test), Q value = 0.14
nPatients | nDeath | Duration Range (Median), Month | |
---|---|---|---|
ALL | 492 | 9 | 0.8 - 165.2 (30.6) |
XQ LOSS MUTATED | 38 | 2 | 1.0 - 94.4 (36.2) |
XQ LOSS WILD-TYPE | 454 | 7 | 0.8 - 165.2 (30.4) |
P value = 0.0852 (Wilcoxon-test), Q value = 0.24
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 481 | 61.0 (6.8) |
XQ LOSS MUTATED | 38 | 62.8 (6.8) |
XQ LOSS WILD-TYPE | 443 | 60.8 (6.8) |
P value = 0.0041 (Fisher's exact test), Q value = 0.026
nPatients | T2 | T3 | T4 |
---|---|---|---|
ALL | 187 | 288 | 10 |
XQ LOSS MUTATED | 6 | 29 | 2 |
XQ LOSS WILD-TYPE | 181 | 259 | 8 |
P value = 0.0111 (Fisher's exact test), Q value = 0.052
nPatients | 0 | 1 |
---|---|---|
ALL | 343 | 77 |
XQ LOSS MUTATED | 23 | 13 |
XQ LOSS WILD-TYPE | 320 | 64 |
P value = 0.0336 (Fisher's exact test), Q value = 0.12
nPatients | NO | YES |
---|---|---|
ALL | 390 | 59 |
XQ LOSS MUTATED | 26 | 9 |
XQ LOSS WILD-TYPE | 364 | 50 |
P value = 0.000414 (Wilcoxon-test), Q value = 0.0049
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 402 | 0.4 (1.4) |
XQ LOSS MUTATED | 35 | 1.0 (1.6) |
XQ LOSS WILD-TYPE | 367 | 0.4 (1.3) |
P value = 3.01e-07 (Wilcoxon-test), Q value = 2.2e-05
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 492 | 7.6 (1.0) |
XQ LOSS MUTATED | 38 | 8.4 (0.9) |
XQ LOSS WILD-TYPE | 454 | 7.5 (1.0) |
P value = 0.0221 (Wilcoxon-test), Q value = 0.083
nPatients | Mean (Std.Dev) | |
---|---|---|
ALL | 435 | 1.8 (15.9) |
XQ LOSS MUTATED | 34 | 10.7 (55.2) |
XQ LOSS WILD-TYPE | 401 | 1.0 (4.1) |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/PRAD-TP/22533740/transformed.cor.cli.txt
-
Clinical data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/PRAD-TP/22506989/PRAD-TP.merged_data.txt
-
Number of patients = 492
-
Number of significantly arm-level cnvs = 80
-
Number of selected clinical features = 11
-
Exclude regions that fewer than K tumors have mutations, K = 3
For survival clinical features, the Kaplan-Meier survival curves of tumors with and without gene mutations were plotted and the statistical significance P values were estimated by logrank test (Bland and Altman 2004) using the 'survdiff' function in R
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.