This pipeline computes the correlation between significant arm-level copy number variations (cnvs) and molecular subtypes.
Testing the association between copy number variation 82 arm-level events and 10 molecular subtypes across 367 patients, 181 significant findings detected with P value < 0.05 and Q value < 0.25.
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1q gain cnv correlated to 'CN_CNMF', 'RPPA_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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2p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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2q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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4p gain cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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4q gain cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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5p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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5q gain cnv correlated to 'CN_CNMF'.
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6p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', 'MIRSEQ_CHIERARCHICAL', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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7p gain cnv correlated to 'CN_CNMF'.
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7q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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8p gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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8q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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9p gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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10q gain cnv correlated to 'METHLYATION_CNMF'.
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11p gain cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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11q gain cnv correlated to 'RPPA_CHIERARCHICAL', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.
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12p gain cnv correlated to 'CN_CNMF'.
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12q gain cnv correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.
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13q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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14q gain cnv correlated to 'RPPA_CHIERARCHICAL'.
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15q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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16q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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17p gain cnv correlated to 'METHLYATION_CNMF'.
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17q gain cnv correlated to 'METHLYATION_CNMF'.
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18p gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.
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18q gain cnv correlated to 'CN_CNMF'.
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19p gain cnv correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.
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19q gain cnv correlated to 'CN_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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20p gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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20q gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.
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22q gain cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xp gain cnv correlated to 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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xq gain cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.
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1p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.
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2p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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2q loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.
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3p loss cnv correlated to 'MIRSEQ_CNMF'.
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3q loss cnv correlated to 'MIRSEQ_CNMF'.
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4p loss cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
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4q loss cnv correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.
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5p loss cnv correlated to 'CN_CNMF'.
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5q loss cnv correlated to 'CN_CNMF' and 'RPPA_CNMF'.
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6p loss cnv correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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6q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.
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7q loss cnv correlated to 'MRNASEQ_CNMF'.
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8p loss cnv correlated to 'RPPA_CNMF' and 'MRNASEQ_CNMF'.
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8q loss cnv correlated to 'METHLYATION_CNMF', 'RPPA_CNMF', 'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'RPPA_CNMF', 'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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9q loss cnv correlated to 'CN_CNMF', 'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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10p loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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10q loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.
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11p loss cnv correlated to 'CN_CNMF'.
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11q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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12q loss cnv correlated to 'CN_CNMF'.
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14q loss cnv correlated to 'CN_CNMF', 'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.
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16p loss cnv correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.
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16q loss cnv correlated to 'CN_CNMF'.
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17p loss cnv correlated to 'METHLYATION_CNMF'.
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17q loss cnv correlated to 'RPPA_CNMF'.
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19p loss cnv correlated to 'CN_CNMF'.
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19q loss cnv correlated to 'CN_CNMF'.
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20p loss cnv correlated to 'MIRSEQ_CHIERARCHICAL'.
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20q loss cnv correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.
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21q loss cnv correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.
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xp loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
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xq loss cnv correlated to 'CN_CNMF', 'METHLYATION_CNMF', 'MRNASEQ_CNMF', 'MRNASEQ_CHIERARCHICAL', 'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.
Clinical Features |
CN CNMF |
METHLYATION CNMF |
RPPA CNMF |
RPPA CHIERARCHICAL |
MRNASEQ CNMF |
MRNASEQ CHIERARCHICAL |
MIRSEQ CNMF |
MIRSEQ CHIERARCHICAL |
MIRSEQ MATURE CNMF |
MIRSEQ MATURE CHIERARCHICAL |
||
nCNV (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | |
6p gain | 148 (40%) | 219 |
0.00077 (0.0186) |
0.0129 (0.0982) |
0.584 (0.787) |
0.209 (0.505) |
0.0169 (0.119) |
0.0384 (0.195) |
0.04 (0.199) |
0.00036 (0.0102) |
3e-05 (0.00145) |
0.0001 (0.0039) |
2p gain | 67 (18%) | 300 |
0.00194 (0.0325) |
0.00285 (0.0399) |
0.832 (0.917) |
0.417 (0.673) |
0.00831 (0.0741) |
0.00423 (0.051) |
0.311 (0.588) |
0.00096 (0.0199) |
0.212 (0.507) |
0.00122 (0.0238) |
2q gain | 65 (18%) | 302 |
0.00131 (0.025) |
0.00222 (0.035) |
0.943 (0.971) |
0.132 (0.398) |
0.00152 (0.0271) |
0.0052 (0.0566) |
0.228 (0.511) |
0.0003 (0.00946) |
0.283 (0.557) |
0.00243 (0.0367) |
xp loss | 96 (26%) | 271 |
0.036 (0.187) |
1e-05 (0.000683) |
0.0865 (0.303) |
0.175 (0.468) |
0.0014 (0.0259) |
0.00179 (0.0306) |
0.0201 (0.134) |
0.0622 (0.254) |
0.0937 (0.318) |
0.0251 (0.151) |
xq loss | 92 (25%) | 275 |
0.0469 (0.214) |
2e-05 (0.00109) |
0.0829 (0.295) |
0.584 (0.787) |
0.00092 (0.0199) |
0.00429 (0.051) |
0.0463 (0.214) |
0.344 (0.611) |
0.0569 (0.24) |
0.0197 (0.134) |
1q gain | 173 (47%) | 194 |
3e-05 (0.00145) |
0.608 (0.806) |
0.0137 (0.102) |
0.154 (0.429) |
0.0032 (0.0426) |
0.119 (0.372) |
0.0185 (0.129) |
0.0682 (0.263) |
0.0195 (0.133) |
0.33 (0.597) |
11p gain | 34 (9%) | 333 |
0.0799 (0.29) |
0.0378 (0.192) |
0.118 (0.372) |
0.0283 (0.164) |
0.00401 (0.0498) |
0.00243 (0.0367) |
0.192 (0.491) |
0.00707 (0.0659) |
0.631 (0.821) |
0.0891 (0.308) |
13q gain | 92 (25%) | 275 |
4e-05 (0.00182) |
0.00012 (0.00428) |
0.102 (0.336) |
0.187 (0.487) |
0.00011 (0.0041) |
0.057 (0.24) |
0.221 (0.507) |
0.966 (0.984) |
0.0305 (0.17) |
0.0325 (0.177) |
15q gain | 84 (23%) | 283 |
0.047 (0.214) |
0.275 (0.555) |
0.834 (0.917) |
0.635 (0.822) |
0.0058 (0.058) |
0.00652 (0.0622) |
0.0303 (0.17) |
0.118 (0.372) |
0.144 (0.415) |
0.0441 (0.211) |
16q gain | 45 (12%) | 322 |
2e-05 (0.00109) |
0.0055 (0.0574) |
0.685 (0.855) |
0.457 (0.692) |
0.00337 (0.0439) |
0.0152 (0.11) |
0.209 (0.505) |
0.217 (0.507) |
0.39 (0.663) |
0.00097 (0.0199) |
xq gain | 44 (12%) | 323 |
0.0461 (0.214) |
0.00505 (0.0566) |
0.404 (0.668) |
0.691 (0.855) |
0.00215 (0.035) |
0.00524 (0.0566) |
0.287 (0.56) |
0.717 (0.873) |
0.00057 (0.0146) |
0.603 (0.803) |
9p loss | 235 (64%) | 132 |
0.00034 (0.00996) |
0.0351 (0.186) |
0.0112 (0.0908) |
0.057 (0.24) |
0.0809 (0.291) |
0.0496 (0.225) |
0.443 (0.685) |
0.0991 (0.326) |
0.968 (0.985) |
0.00818 (0.0741) |
8q gain | 172 (47%) | 195 |
5e-05 (0.00216) |
1e-05 (0.000683) |
0.499 (0.719) |
0.691 (0.855) |
0.00046 (0.0122) |
0.0187 (0.129) |
0.811 (0.911) |
0.324 (0.592) |
0.43 (0.68) |
0.387 (0.662) |
11q gain | 28 (8%) | 339 |
0.127 (0.388) |
0.0966 (0.321) |
0.191 (0.491) |
0.0113 (0.0908) |
0.00142 (0.0259) |
0.00353 (0.0452) |
0.14 (0.411) |
0.00032 (0.00972) |
0.221 (0.507) |
0.0671 (0.263) |
16p gain | 57 (16%) | 310 |
7e-05 (0.00287) |
0.00086 (0.0198) |
0.959 (0.98) |
0.877 (0.934) |
0.00567 (0.0574) |
0.0624 (0.254) |
0.307 (0.581) |
0.193 (0.491) |
0.364 (0.632) |
0.00825 (0.0741) |
20p gain | 147 (40%) | 220 |
1e-05 (0.000683) |
0.00041 (0.0112) |
0.257 (0.539) |
0.11 (0.353) |
0.00087 (0.0198) |
0.0132 (0.0991) |
0.127 (0.388) |
0.257 (0.539) |
0.413 (0.67) |
0.0592 (0.247) |
20q gain | 180 (49%) | 187 |
1e-05 (0.000683) |
0.00848 (0.0745) |
0.149 (0.421) |
0.0455 (0.214) |
0.0842 (0.298) |
0.0469 (0.214) |
0.454 (0.692) |
0.21 (0.505) |
0.932 (0.966) |
0.148 (0.421) |
xp gain | 42 (11%) | 325 |
0.199 (0.494) |
0.00489 (0.0566) |
0.633 (0.821) |
0.281 (0.557) |
0.0126 (0.0978) |
0.00975 (0.0824) |
0.341 (0.608) |
0.679 (0.854) |
0.0118 (0.094) |
0.486 (0.713) |
2q loss | 51 (14%) | 316 |
0.151 (0.428) |
0.0256 (0.153) |
0.0671 (0.263) |
0.0392 (0.197) |
0.221 (0.507) |
0.14 (0.411) |
0.00854 (0.0745) |
0.0357 (0.187) |
0.107 (0.346) |
0.714 (0.871) |
8q loss | 25 (7%) | 342 |
0.163 (0.447) |
0.0236 (0.146) |
0.0206 (0.135) |
0.174 (0.467) |
0.323 (0.592) |
0.834 (0.917) |
0.0917 (0.313) |
0.251 (0.533) |
0.021 (0.135) |
0.0202 (0.134) |
10p loss | 204 (56%) | 163 |
1e-05 (0.000683) |
0.00427 (0.051) |
0.63 (0.821) |
0.828 (0.917) |
0.0259 (0.153) |
0.00987 (0.0826) |
0.884 (0.935) |
0.194 (0.491) |
0.154 (0.429) |
0.409 (0.669) |
10q loss | 224 (61%) | 143 |
1e-05 (0.000683) |
0.00122 (0.0238) |
0.818 (0.917) |
0.91 (0.951) |
0.00522 (0.0566) |
0.0029 (0.0399) |
0.593 (0.795) |
0.192 (0.491) |
0.234 (0.515) |
0.211 (0.505) |
7q gain | 199 (54%) | 168 |
0.00559 (0.0574) |
0.181 (0.477) |
0.223 (0.507) |
0.243 (0.527) |
0.0146 (0.108) |
0.0809 (0.291) |
0.952 (0.976) |
0.418 (0.673) |
0.0682 (0.263) |
0.0465 (0.214) |
8p gain | 123 (34%) | 244 |
2e-05 (0.00109) |
0.0905 (0.312) |
0.195 (0.491) |
0.258 (0.539) |
0.0336 (0.18) |
0.023 (0.146) |
0.485 (0.713) |
0.933 (0.966) |
0.498 (0.719) |
0.796 (0.905) |
19q gain | 56 (15%) | 311 |
0.00375 (0.0473) |
0.0731 (0.273) |
0.567 (0.774) |
0.169 (0.458) |
0.0248 (0.15) |
0.0239 (0.146) |
0.945 (0.971) |
0.296 (0.572) |
0.0734 (0.273) |
0.401 (0.668) |
1p loss | 51 (14%) | 316 |
0.00284 (0.0399) |
0.00563 (0.0574) |
0.684 (0.855) |
0.304 (0.578) |
0.506 (0.724) |
0.275 (0.555) |
0.205 (0.502) |
0.848 (0.922) |
0.0097 (0.0824) |
0.125 (0.384) |
2p loss | 50 (14%) | 317 |
0.317 (0.59) |
0.0848 (0.299) |
0.136 (0.402) |
0.252 (0.533) |
0.298 (0.573) |
0.0313 (0.172) |
0.00292 (0.0399) |
0.0218 (0.14) |
0.153 (0.429) |
0.633 (0.821) |
6q loss | 172 (47%) | 195 |
1e-05 (0.000683) |
0.0446 (0.212) |
0.0966 (0.321) |
0.532 (0.748) |
0.00513 (0.0566) |
0.0561 (0.24) |
0.526 (0.742) |
0.235 (0.515) |
0.451 (0.689) |
0.289 (0.56) |
9q loss | 185 (50%) | 182 |
0.0207 (0.135) |
0.141 (0.412) |
0.0916 (0.313) |
0.562 (0.771) |
0.146 (0.418) |
0.748 (0.885) |
0.218 (0.507) |
0.0287 (0.164) |
0.87 (0.934) |
0.00905 (0.0781) |
14q loss | 112 (31%) | 255 |
0.00013 (0.00444) |
0.0617 (0.254) |
0.409 (0.669) |
0.0355 (0.187) |
0.0258 (0.153) |
0.0571 (0.24) |
0.322 (0.592) |
0.825 (0.917) |
0.422 (0.676) |
0.692 (0.855) |
5p gain | 74 (20%) | 293 |
1e-05 (0.000683) |
0.353 (0.618) |
0.643 (0.829) |
0.393 (0.663) |
0.406 (0.668) |
0.217 (0.507) |
0.079 (0.289) |
0.54 (0.751) |
0.304 (0.578) |
0.031 (0.172) |
18p gain | 56 (15%) | 311 |
0.0129 (0.0982) |
0.0541 (0.237) |
0.384 (0.659) |
0.727 (0.876) |
0.69 (0.855) |
0.457 (0.692) |
0.856 (0.928) |
0.813 (0.912) |
0.00664 (0.0626) |
0.458 (0.692) |
19p gain | 58 (16%) | 309 |
0.0236 (0.146) |
0.18 (0.477) |
0.536 (0.749) |
0.494 (0.719) |
0.0261 (0.153) |
0.0604 (0.25) |
0.986 (0.995) |
0.499 (0.719) |
0.0626 (0.254) |
0.415 (0.671) |
22q gain | 126 (34%) | 241 |
0.00604 (0.059) |
0.0556 (0.24) |
0.262 (0.544) |
0.258 (0.539) |
0.0822 (0.294) |
0.154 (0.429) |
0.444 (0.685) |
0.147 (0.42) |
0.723 (0.876) |
0.043 (0.209) |
4p loss | 80 (22%) | 287 |
0.276 (0.555) |
0.593 (0.795) |
0.739 (0.88) |
0.465 (0.696) |
0.353 (0.618) |
0.015 (0.11) |
0.498 (0.719) |
0.00596 (0.0589) |
0.727 (0.876) |
0.834 (0.917) |
4q loss | 85 (23%) | 282 |
0.249 (0.533) |
0.748 (0.885) |
0.823 (0.917) |
0.557 (0.764) |
0.234 (0.515) |
0.0163 (0.116) |
0.481 (0.709) |
0.00322 (0.0426) |
0.645 (0.829) |
0.473 (0.7) |
5q loss | 97 (26%) | 270 |
1e-05 (0.000683) |
0.437 (0.683) |
0.0345 (0.184) |
0.934 (0.966) |
0.356 (0.622) |
0.272 (0.554) |
0.948 (0.973) |
0.667 (0.847) |
0.833 (0.917) |
0.988 (0.995) |
6p loss | 70 (19%) | 297 |
0.0635 (0.255) |
0.867 (0.933) |
0.469 (0.697) |
0.88 (0.935) |
0.00073 (0.0181) |
0.051 (0.23) |
0.502 (0.721) |
0.0698 (0.266) |
0.121 (0.374) |
0.0125 (0.0978) |
8p loss | 66 (18%) | 301 |
0.068 (0.263) |
0.367 (0.636) |
0.0183 (0.128) |
0.0728 (0.273) |
0.0376 (0.192) |
0.84 (0.919) |
0.245 (0.528) |
0.0523 (0.233) |
0.519 (0.738) |
0.584 (0.787) |
11q loss | 149 (41%) | 218 |
0.0017 (0.0297) |
0.859 (0.929) |
0.897 (0.943) |
0.405 (0.668) |
0.481 (0.709) |
0.263 (0.545) |
0.754 (0.885) |
0.245 (0.528) |
0.301 (0.576) |
0.0297 (0.168) |
16p loss | 69 (19%) | 298 |
0.00028 (0.00918) |
0.0293 (0.167) |
0.318 (0.59) |
0.546 (0.755) |
0.159 (0.438) |
0.27 (0.554) |
0.197 (0.494) |
0.142 (0.412) |
0.112 (0.359) |
0.673 (0.85) |
20q loss | 9 (2%) | 358 |
0.762 (0.885) |
0.106 (0.345) |
0.445 (0.685) |
0.0408 (0.201) |
0.47 (0.697) |
0.00525 (0.0566) |
0.26 (0.542) |
0.39 (0.663) |
0.575 (0.781) |
0.457 (0.692) |
21q loss | 70 (19%) | 297 |
0.0106 (0.0869) |
0.394 (0.663) |
0.533 (0.748) |
0.67 (0.848) |
0.252 (0.533) |
0.336 (0.604) |
0.0159 (0.115) |
0.727 (0.876) |
0.132 (0.398) |
0.737 (0.878) |
4p gain | 57 (16%) | 310 |
0.21 (0.505) |
0.0528 (0.234) |
0.744 (0.883) |
0.621 (0.818) |
0.436 (0.683) |
0.238 (0.519) |
0.136 (0.402) |
0.00246 (0.0367) |
0.232 (0.515) |
0.614 (0.813) |
4q gain | 48 (13%) | 319 |
0.371 (0.639) |
0.115 (0.366) |
0.177 (0.472) |
0.614 (0.813) |
0.312 (0.588) |
0.412 (0.67) |
0.107 (0.346) |
0.00559 (0.0574) |
0.325 (0.592) |
0.798 (0.906) |
5q gain | 52 (14%) | 315 |
1e-05 (0.000683) |
0.33 (0.597) |
0.796 (0.905) |
0.302 (0.576) |
0.342 (0.608) |
0.875 (0.934) |
0.214 (0.507) |
0.434 (0.682) |
0.106 (0.346) |
0.443 (0.685) |
7p gain | 204 (56%) | 163 |
0.00096 (0.0199) |
0.273 (0.555) |
0.18 (0.477) |
0.161 (0.442) |
0.0972 (0.321) |
0.2 (0.495) |
0.96 (0.98) |
0.737 (0.878) |
0.515 (0.736) |
0.288 (0.56) |
9p gain | 16 (4%) | 351 |
0.524 (0.742) |
0.277 (0.555) |
0.0833 (0.296) |
0.046 (0.214) |
0.574 (0.781) |
0.899 (0.944) |
0.495 (0.719) |
0.721 (0.876) |
0.495 (0.719) |
0.523 (0.742) |
10q gain | 3 (1%) | 364 |
0.19 (0.49) |
0.0432 (0.209) |
0.698 (0.859) |
1 (1.00) |
0.864 (0.932) |
0.85 (0.923) |
0.356 (0.622) |
0.501 (0.721) |
||
12p gain | 64 (17%) | 303 |
0.00822 (0.0741) |
0.17 (0.459) |
0.449 (0.687) |
0.095 (0.321) |
0.233 (0.515) |
0.938 (0.968) |
0.883 (0.935) |
0.414 (0.671) |
0.318 (0.59) |
0.467 (0.696) |
12q gain | 40 (11%) | 327 |
0.055 (0.239) |
0.64 (0.827) |
0.974 (0.986) |
0.159 (0.438) |
0.798 (0.906) |
0.699 (0.86) |
0.956 (0.979) |
0.222 (0.507) |
0.579 (0.785) |
0.0332 (0.179) |
14q gain | 42 (11%) | 325 |
0.876 (0.934) |
0.893 (0.941) |
0.395 (0.663) |
0.043 (0.209) |
0.828 (0.917) |
0.727 (0.876) |
0.534 (0.748) |
0.824 (0.917) |
0.49 (0.717) |
0.234 (0.515) |
17p gain | 40 (11%) | 327 |
0.0939 (0.318) |
0.0101 (0.0834) |
0.569 (0.776) |
0.244 (0.527) |
0.734 (0.878) |
0.348 (0.614) |
0.27 (0.554) |
0.438 (0.683) |
0.908 (0.951) |
0.456 (0.692) |
17q gain | 67 (18%) | 300 |
0.224 (0.507) |
0.0422 (0.207) |
0.847 (0.922) |
0.905 (0.949) |
0.989 (0.996) |
0.422 (0.676) |
0.198 (0.494) |
0.357 (0.622) |
0.463 (0.695) |
0.157 (0.435) |
18q gain | 45 (12%) | 322 |
0.00271 (0.0397) |
0.37 (0.639) |
0.323 (0.592) |
0.406 (0.668) |
0.545 (0.755) |
0.585 (0.787) |
0.811 (0.911) |
0.867 (0.933) |
0.196 (0.492) |
0.618 (0.815) |
3p loss | 60 (16%) | 307 |
0.314 (0.588) |
0.79 (0.904) |
0.803 (0.907) |
0.438 (0.683) |
0.207 (0.504) |
0.464 (0.696) |
0.00652 (0.0622) |
0.662 (0.842) |
0.931 (0.966) |
0.143 (0.413) |
3q loss | 51 (14%) | 316 |
0.195 (0.491) |
0.395 (0.663) |
0.59 (0.794) |
0.143 (0.413) |
0.423 (0.677) |
0.603 (0.803) |
0.0234 (0.146) |
0.428 (0.677) |
0.215 (0.507) |
0.535 (0.748) |
5p loss | 79 (22%) | 288 |
1e-05 (0.000683) |
0.756 (0.885) |
0.0963 (0.321) |
0.86 (0.929) |
0.42 (0.676) |
0.759 (0.885) |
0.76 (0.885) |
0.345 (0.611) |
0.403 (0.668) |
0.467 (0.696) |
7q loss | 17 (5%) | 350 |
0.398 (0.666) |
0.533 (0.748) |
0.599 (0.802) |
0.201 (0.496) |
0.0237 (0.146) |
0.485 (0.713) |
0.828 (0.917) |
0.834 (0.917) |
0.142 (0.412) |
0.97 (0.985) |
11p loss | 126 (34%) | 241 |
0.00222 (0.035) |
0.385 (0.659) |
0.874 (0.934) |
0.705 (0.865) |
0.887 (0.937) |
0.882 (0.935) |
0.629 (0.821) |
0.134 (0.401) |
0.445 (0.685) |
0.281 (0.557) |
12q loss | 68 (19%) | 299 |
0.0205 (0.135) |
0.0514 (0.23) |
0.448 (0.687) |
0.313 (0.588) |
0.298 (0.573) |
0.713 (0.871) |
0.27 (0.554) |
0.333 (0.602) |
0.631 (0.821) |
0.277 (0.555) |
16q loss | 105 (29%) | 262 |
1e-05 (0.000683) |
0.08 (0.29) |
0.0873 (0.304) |
0.554 (0.762) |
0.0593 (0.247) |
0.0663 (0.263) |
0.225 (0.507) |
0.202 (0.497) |
0.181 (0.477) |
0.134 (0.401) |
17p loss | 124 (34%) | 243 |
0.444 (0.685) |
0.0315 (0.172) |
0.0702 (0.266) |
0.0693 (0.266) |
0.428 (0.677) |
0.205 (0.502) |
0.757 (0.885) |
0.633 (0.821) |
0.729 (0.877) |
0.223 (0.507) |
17q loss | 62 (17%) | 305 |
0.689 (0.855) |
0.972 (0.985) |
0.0277 (0.161) |
0.206 (0.502) |
0.677 (0.853) |
0.426 (0.677) |
0.846 (0.922) |
0.518 (0.737) |
0.235 (0.515) |
0.809 (0.911) |
19p loss | 77 (21%) | 290 |
0.0397 (0.198) |
0.743 (0.883) |
0.537 (0.749) |
0.724 (0.876) |
0.12 (0.374) |
0.665 (0.845) |
0.223 (0.507) |
0.94 (0.969) |
0.661 (0.842) |
0.765 (0.885) |
19q loss | 73 (20%) | 294 |
0.0372 (0.192) |
0.121 (0.374) |
0.241 (0.525) |
0.336 (0.604) |
0.121 (0.374) |
0.425 (0.677) |
0.174 (0.467) |
0.964 (0.983) |
0.341 (0.608) |
0.732 (0.878) |
20p loss | 25 (7%) | 342 |
0.752 (0.885) |
0.111 (0.355) |
0.375 (0.645) |
0.222 (0.507) |
0.321 (0.592) |
0.064 (0.256) |
0.0676 (0.263) |
0.0124 (0.0978) |
0.791 (0.904) |
0.187 (0.487) |
1p gain | 93 (25%) | 274 |
0.338 (0.606) |
0.444 (0.685) |
0.315 (0.588) |
0.402 (0.668) |
0.0534 (0.236) |
0.706 (0.865) |
0.633 (0.821) |
0.986 (0.995) |
0.281 (0.557) |
0.607 (0.806) |
3p gain | 64 (17%) | 303 |
0.328 (0.596) |
0.693 (0.855) |
0.711 (0.87) |
0.801 (0.907) |
0.655 (0.837) |
0.736 (0.878) |
0.287 (0.56) |
0.266 (0.549) |
0.838 (0.919) |
0.876 (0.934) |
3q gain | 74 (20%) | 293 |
0.76 (0.885) |
0.225 (0.507) |
0.468 (0.697) |
0.538 (0.749) |
0.313 (0.588) |
0.505 (0.724) |
0.188 (0.487) |
0.496 (0.719) |
0.405 (0.668) |
0.819 (0.917) |
6q gain | 50 (14%) | 317 |
0.525 (0.742) |
0.913 (0.954) |
0.769 (0.888) |
0.692 (0.855) |
1 (1.00) |
0.394 (0.663) |
0.553 (0.762) |
0.254 (0.536) |
0.227 (0.509) |
0.552 (0.761) |
9q gain | 20 (5%) | 347 |
0.132 (0.398) |
0.323 (0.592) |
0.0763 (0.282) |
0.0956 (0.321) |
0.917 (0.956) |
0.339 (0.608) |
0.839 (0.919) |
0.761 (0.885) |
0.752 (0.885) |
0.567 (0.774) |
10p gain | 12 (3%) | 355 |
0.276 (0.555) |
0.972 (0.985) |
0.725 (0.876) |
0.774 (0.892) |
0.935 (0.966) |
0.933 (0.966) |
0.234 (0.515) |
0.323 (0.592) |
0.684 (0.855) |
0.454 (0.692) |
21q gain | 67 (18%) | 300 |
0.19 (0.49) |
0.194 (0.491) |
0.287 (0.56) |
0.285 (0.559) |
0.271 (0.554) |
0.754 (0.885) |
0.432 (0.681) |
0.772 (0.891) |
0.761 (0.885) |
0.411 (0.67) |
1q loss | 27 (7%) | 340 |
0.0735 (0.273) |
0.0549 (0.239) |
0.897 (0.943) |
0.651 (0.836) |
0.686 (0.855) |
0.765 (0.885) |
0.644 (0.829) |
0.939 (0.968) |
0.675 (0.851) |
0.625 (0.819) |
7p loss | 18 (5%) | 349 |
0.461 (0.694) |
0.252 (0.533) |
0.292 (0.565) |
0.567 (0.774) |
0.0681 (0.263) |
0.784 (0.9) |
0.409 (0.669) |
0.778 (0.894) |
0.218 (0.507) |
0.824 (0.917) |
12p loss | 61 (17%) | 306 |
0.249 (0.533) |
0.188 (0.487) |
0.993 (0.998) |
0.765 (0.885) |
0.351 (0.617) |
0.792 (0.904) |
0.285 (0.559) |
0.131 (0.396) |
0.802 (0.907) |
0.174 (0.467) |
13q loss | 82 (22%) | 285 |
0.37 (0.639) |
0.623 (0.818) |
0.283 (0.557) |
0.811 (0.911) |
0.223 (0.507) |
0.393 (0.663) |
0.432 (0.681) |
0.389 (0.663) |
0.281 (0.557) |
0.118 (0.372) |
15q loss | 54 (15%) | 313 |
0.517 (0.737) |
0.733 (0.878) |
0.152 (0.429) |
0.0635 (0.255) |
0.346 (0.612) |
0.616 (0.813) |
0.869 (0.934) |
0.67 (0.848) |
0.225 (0.507) |
0.876 (0.934) |
18p loss | 104 (28%) | 263 |
0.251 (0.533) |
0.493 (0.719) |
0.301 (0.576) |
0.46 (0.694) |
0.0783 (0.288) |
0.236 (0.515) |
0.988 (0.995) |
0.0724 (0.273) |
0.69 (0.855) |
0.759 (0.885) |
18q loss | 100 (27%) | 267 |
0.221 (0.507) |
0.277 (0.555) |
0.168 (0.458) |
0.837 (0.919) |
0.545 (0.755) |
0.858 (0.929) |
0.88 (0.935) |
0.0886 (0.308) |
0.915 (0.954) |
0.846 (0.922) |
22q loss | 39 (11%) | 328 |
0.787 (0.901) |
0.406 (0.668) |
0.659 (0.842) |
0.602 (0.803) |
0.219 (0.507) |
0.692 (0.855) |
0.785 (0.9) |
0.654 (0.837) |
0.425 (0.677) |
0.89 (0.94) |
P value = 3e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
1Q GAIN MUTATED | 81 | 63 | 29 |
1Q GAIN WILD-TYPE | 73 | 47 | 74 |
P value = 0.0137 (Fisher's exact test), Q value = 0.1
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 78 | 43 | 69 | 32 |
1Q GAIN MUTATED | 11 | 37 | 18 | 35 | 22 |
1Q GAIN WILD-TYPE | 28 | 41 | 25 | 34 | 10 |
P value = 0.0032 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
1Q GAIN MUTATED | 64 | 21 | 51 | 37 |
1Q GAIN WILD-TYPE | 52 | 52 | 54 | 36 |
P value = 0.0185 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 97 | 103 | 97 | 54 |
1Q GAIN MUTATED | 39 | 53 | 39 | 34 |
1Q GAIN WILD-TYPE | 58 | 50 | 58 | 20 |
P value = 0.0195 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 119 | 133 |
1Q GAIN MUTATED | 32 | 53 | 75 |
1Q GAIN WILD-TYPE | 53 | 66 | 58 |
P value = 0.00194 (Fisher's exact test), Q value = 0.032
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
2P GAIN MUTATED | 32 | 27 | 8 |
2P GAIN WILD-TYPE | 122 | 83 | 95 |
P value = 0.00285 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
2P GAIN MUTATED | 15 | 17 | 4 | 31 |
2P GAIN WILD-TYPE | 96 | 105 | 30 | 68 |
P value = 0.00831 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
2P GAIN MUTATED | 20 | 7 | 30 | 10 |
2P GAIN WILD-TYPE | 96 | 66 | 75 | 63 |
P value = 0.00423 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
2P GAIN MUTATED | 19 | 20 | 28 |
2P GAIN WILD-TYPE | 86 | 145 | 69 |
P value = 0.00096 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
2P GAIN MUTATED | 19 | 27 | 8 | 11 |
2P GAIN WILD-TYPE | 113 | 66 | 80 | 27 |
P value = 0.00122 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
2P GAIN MUTATED | 4 | 2 | 9 | 8 | 17 | 3 | 11 | 9 | 0 |
2P GAIN WILD-TYPE | 32 | 22 | 42 | 55 | 21 | 14 | 53 | 20 | 15 |
P value = 0.00131 (Fisher's exact test), Q value = 0.025
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
2Q GAIN MUTATED | 28 | 29 | 8 |
2Q GAIN WILD-TYPE | 126 | 81 | 95 |
P value = 0.00222 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
2Q GAIN MUTATED | 13 | 19 | 3 | 30 |
2Q GAIN WILD-TYPE | 98 | 103 | 31 | 69 |
P value = 0.00152 (Fisher's exact test), Q value = 0.027
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
2Q GAIN MUTATED | 15 | 8 | 32 | 10 |
2Q GAIN WILD-TYPE | 101 | 65 | 73 | 63 |
P value = 0.0052 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
2Q GAIN MUTATED | 15 | 22 | 28 |
2Q GAIN WILD-TYPE | 90 | 143 | 69 |
P value = 3e-04 (Fisher's exact test), Q value = 0.0095
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
2Q GAIN MUTATED | 18 | 27 | 7 | 11 |
2Q GAIN WILD-TYPE | 114 | 66 | 81 | 27 |
P value = 0.00243 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
2Q GAIN MUTATED | 4 | 2 | 7 | 9 | 16 | 4 | 10 | 9 | 0 |
2Q GAIN WILD-TYPE | 32 | 22 | 44 | 54 | 22 | 13 | 54 | 20 | 15 |
P value = 0.00246 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
4P GAIN MUTATED | 32 | 6 | 14 | 4 |
4P GAIN WILD-TYPE | 100 | 87 | 74 | 34 |
P value = 0.00559 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
4Q GAIN MUTATED | 29 | 6 | 9 | 4 |
4Q GAIN WILD-TYPE | 103 | 87 | 79 | 34 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
5P GAIN MUTATED | 52 | 13 | 9 |
5P GAIN WILD-TYPE | 102 | 97 | 94 |
P value = 0.031 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
5P GAIN MUTATED | 2 | 1 | 12 | 15 | 6 | 7 | 12 | 8 | 3 |
5P GAIN WILD-TYPE | 34 | 23 | 39 | 48 | 32 | 10 | 52 | 21 | 12 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
5Q GAIN MUTATED | 41 | 4 | 7 |
5Q GAIN WILD-TYPE | 113 | 106 | 96 |
P value = 0.00077 (Fisher's exact test), Q value = 0.019
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
6P GAIN MUTATED | 73 | 49 | 26 |
6P GAIN WILD-TYPE | 81 | 61 | 77 |
P value = 0.0129 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
6P GAIN MUTATED | 48 | 35 | 16 | 48 |
6P GAIN WILD-TYPE | 63 | 87 | 18 | 51 |
P value = 0.0169 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
6P GAIN MUTATED | 49 | 25 | 34 | 40 |
6P GAIN WILD-TYPE | 67 | 48 | 71 | 33 |
P value = 0.0384 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
6P GAIN MUTATED | 49 | 70 | 29 |
6P GAIN WILD-TYPE | 56 | 95 | 68 |
P value = 0.04 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 97 | 103 | 97 | 54 |
6P GAIN MUTATED | 37 | 53 | 31 | 23 |
6P GAIN WILD-TYPE | 60 | 50 | 66 | 31 |
P value = 0.00036 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
6P GAIN MUTATED | 71 | 24 | 36 | 13 |
6P GAIN WILD-TYPE | 61 | 69 | 52 | 25 |
P value = 3e-05 (Fisher's exact test), Q value = 0.0014
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 119 | 133 |
6P GAIN MUTATED | 23 | 40 | 75 |
6P GAIN WILD-TYPE | 62 | 79 | 58 |
P value = 1e-04 (Fisher's exact test), Q value = 0.0039
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
6P GAIN MUTATED | 11 | 4 | 20 | 38 | 9 | 3 | 33 | 10 | 10 |
6P GAIN WILD-TYPE | 25 | 20 | 31 | 25 | 29 | 14 | 31 | 19 | 5 |
P value = 0.00096 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
7P GAIN MUTATED | 99 | 63 | 42 |
7P GAIN WILD-TYPE | 55 | 47 | 61 |
P value = 0.00559 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
7Q GAIN MUTATED | 96 | 60 | 43 |
7Q GAIN WILD-TYPE | 58 | 50 | 60 |
P value = 0.0146 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
7Q GAIN MUTATED | 53 | 42 | 69 | 35 |
7Q GAIN WILD-TYPE | 63 | 31 | 36 | 38 |
P value = 0.0465 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
7Q GAIN MUTATED | 17 | 11 | 35 | 24 | 24 | 12 | 33 | 17 | 8 |
7Q GAIN WILD-TYPE | 19 | 13 | 16 | 39 | 14 | 5 | 31 | 12 | 7 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
8P GAIN MUTATED | 55 | 51 | 17 |
8P GAIN WILD-TYPE | 99 | 59 | 86 |
P value = 0.0336 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
8P GAIN MUTATED | 31 | 19 | 43 | 30 |
8P GAIN WILD-TYPE | 85 | 54 | 62 | 43 |
P value = 0.023 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
8P GAIN MUTATED | 42 | 43 | 38 |
8P GAIN WILD-TYPE | 63 | 122 | 59 |
P value = 5e-05 (Fisher's exact test), Q value = 0.0022
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
8Q GAIN MUTATED | 82 | 61 | 29 |
8Q GAIN WILD-TYPE | 72 | 49 | 74 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
8Q GAIN MUTATED | 34 | 54 | 24 | 59 |
8Q GAIN WILD-TYPE | 77 | 68 | 10 | 40 |
P value = 0.00046 (Fisher's exact test), Q value = 0.012
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
8Q GAIN MUTATED | 44 | 26 | 55 | 47 |
8Q GAIN WILD-TYPE | 72 | 47 | 50 | 26 |
P value = 0.0187 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
8Q GAIN MUTATED | 55 | 64 | 53 |
8Q GAIN WILD-TYPE | 50 | 101 | 44 |
P value = 0.046 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 84 | 91 |
9P GAIN MUTATED | 8 | 1 | 4 |
9P GAIN WILD-TYPE | 78 | 83 | 87 |
P value = 0.0432 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
10Q GAIN MUTATED | 0 | 0 | 0 | 3 |
10Q GAIN WILD-TYPE | 111 | 122 | 34 | 96 |
P value = 0.0378 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
11P GAIN MUTATED | 6 | 8 | 5 | 15 |
11P GAIN WILD-TYPE | 105 | 114 | 29 | 84 |
P value = 0.0283 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 84 | 91 |
11P GAIN MUTATED | 14 | 7 | 4 |
11P GAIN WILD-TYPE | 72 | 77 | 87 |
P value = 0.00401 (Fisher's exact test), Q value = 0.05
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
11P GAIN MUTATED | 6 | 3 | 19 | 6 |
11P GAIN WILD-TYPE | 110 | 70 | 86 | 67 |
P value = 0.00243 (Fisher's exact test), Q value = 0.037
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
11P GAIN MUTATED | 7 | 9 | 18 |
11P GAIN WILD-TYPE | 98 | 156 | 79 |
P value = 0.00707 (Fisher's exact test), Q value = 0.066
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
11P GAIN MUTATED | 16 | 13 | 2 | 1 |
11P GAIN WILD-TYPE | 116 | 80 | 86 | 37 |
P value = 0.0113 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 84 | 91 |
11Q GAIN MUTATED | 12 | 7 | 2 |
11Q GAIN WILD-TYPE | 74 | 77 | 89 |
P value = 0.00142 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
11Q GAIN MUTATED | 2 | 4 | 16 | 6 |
11Q GAIN WILD-TYPE | 114 | 69 | 89 | 67 |
P value = 0.00353 (Fisher's exact test), Q value = 0.045
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
11Q GAIN MUTATED | 3 | 10 | 15 |
11Q GAIN WILD-TYPE | 102 | 155 | 82 |
P value = 0.00032 (Fisher's exact test), Q value = 0.0097
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
11Q GAIN MUTATED | 14 | 11 | 0 | 0 |
11Q GAIN WILD-TYPE | 118 | 82 | 88 | 38 |
P value = 0.00822 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
12P GAIN MUTATED | 36 | 19 | 9 |
12P GAIN WILD-TYPE | 118 | 91 | 94 |
P value = 0.0332 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
12Q GAIN MUTATED | 1 | 0 | 9 | 5 | 9 | 2 | 8 | 4 | 0 |
12Q GAIN WILD-TYPE | 35 | 24 | 42 | 58 | 29 | 15 | 56 | 25 | 15 |
P value = 4e-05 (Fisher's exact test), Q value = 0.0018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
13Q GAIN MUTATED | 40 | 41 | 11 |
13Q GAIN WILD-TYPE | 114 | 69 | 92 |
P value = 0.00012 (Fisher's exact test), Q value = 0.0043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
13Q GAIN MUTATED | 24 | 17 | 10 | 40 |
13Q GAIN WILD-TYPE | 87 | 105 | 24 | 59 |
P value = 0.00011 (Fisher's exact test), Q value = 0.0041
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
13Q GAIN MUTATED | 20 | 9 | 33 | 30 |
13Q GAIN WILD-TYPE | 96 | 64 | 72 | 43 |
P value = 0.0305 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 119 | 133 |
13Q GAIN MUTATED | 13 | 37 | 35 |
13Q GAIN WILD-TYPE | 72 | 82 | 98 |
P value = 0.0325 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
13Q GAIN MUTATED | 5 | 3 | 7 | 20 | 13 | 4 | 24 | 6 | 3 |
13Q GAIN WILD-TYPE | 31 | 21 | 44 | 43 | 25 | 13 | 40 | 23 | 12 |
P value = 0.043 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 84 | 91 |
14Q GAIN MUTATED | 5 | 15 | 9 |
14Q GAIN WILD-TYPE | 81 | 69 | 82 |
P value = 0.047 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
15Q GAIN MUTATED | 42 | 27 | 15 |
15Q GAIN WILD-TYPE | 112 | 83 | 88 |
P value = 0.0058 (Fisher's exact test), Q value = 0.058
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
15Q GAIN MUTATED | 15 | 18 | 34 | 17 |
15Q GAIN WILD-TYPE | 101 | 55 | 71 | 56 |
P value = 0.00652 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
15Q GAIN MUTATED | 16 | 35 | 33 |
15Q GAIN WILD-TYPE | 89 | 130 | 64 |
P value = 0.0303 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 97 | 103 | 97 | 54 |
15Q GAIN MUTATED | 22 | 13 | 28 | 14 |
15Q GAIN WILD-TYPE | 75 | 90 | 69 | 40 |
P value = 0.0441 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
15Q GAIN MUTATED | 8 | 3 | 11 | 7 | 15 | 7 | 14 | 6 | 3 |
15Q GAIN WILD-TYPE | 28 | 21 | 40 | 56 | 23 | 10 | 50 | 23 | 12 |
P value = 7e-05 (Fisher's exact test), Q value = 0.0029
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
16P GAIN MUTATED | 21 | 30 | 6 |
16P GAIN WILD-TYPE | 133 | 80 | 97 |
P value = 0.00086 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
16P GAIN MUTATED | 10 | 15 | 3 | 28 |
16P GAIN WILD-TYPE | 101 | 107 | 31 | 71 |
P value = 0.00567 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
16P GAIN MUTATED | 9 | 9 | 21 | 18 |
16P GAIN WILD-TYPE | 107 | 64 | 84 | 55 |
P value = 0.00825 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
16P GAIN MUTATED | 3 | 0 | 3 | 9 | 8 | 5 | 17 | 5 | 2 |
16P GAIN WILD-TYPE | 33 | 24 | 48 | 54 | 30 | 12 | 47 | 24 | 13 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
16Q GAIN MUTATED | 13 | 28 | 4 |
16Q GAIN WILD-TYPE | 141 | 82 | 99 |
P value = 0.0055 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
16Q GAIN MUTATED | 8 | 12 | 2 | 22 |
16Q GAIN WILD-TYPE | 103 | 110 | 32 | 77 |
P value = 0.00337 (Fisher's exact test), Q value = 0.044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
16Q GAIN MUTATED | 6 | 6 | 20 | 13 |
16Q GAIN WILD-TYPE | 110 | 67 | 85 | 60 |
P value = 0.0152 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
16Q GAIN MUTATED | 11 | 14 | 20 |
16Q GAIN WILD-TYPE | 94 | 151 | 77 |
P value = 0.00097 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
16Q GAIN MUTATED | 1 | 0 | 1 | 7 | 8 | 4 | 15 | 4 | 2 |
16Q GAIN WILD-TYPE | 35 | 24 | 50 | 56 | 30 | 13 | 49 | 25 | 13 |
P value = 0.0101 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
17P GAIN MUTATED | 14 | 5 | 4 | 17 |
17P GAIN WILD-TYPE | 97 | 117 | 30 | 82 |
P value = 0.0422 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
17Q GAIN MUTATED | 26 | 13 | 6 | 22 |
17Q GAIN WILD-TYPE | 85 | 109 | 28 | 77 |
P value = 0.0129 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
18P GAIN MUTATED | 29 | 20 | 7 |
18P GAIN WILD-TYPE | 125 | 90 | 96 |
P value = 0.00664 (Fisher's exact test), Q value = 0.063
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 119 | 133 |
18P GAIN MUTATED | 9 | 12 | 31 |
18P GAIN WILD-TYPE | 76 | 107 | 102 |
P value = 0.00271 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
18Q GAIN MUTATED | 21 | 20 | 4 |
18Q GAIN WILD-TYPE | 133 | 90 | 99 |
P value = 0.0236 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
19P GAIN MUTATED | 29 | 21 | 8 |
19P GAIN WILD-TYPE | 125 | 89 | 95 |
P value = 0.0261 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
19P GAIN MUTATED | 16 | 5 | 24 | 13 |
19P GAIN WILD-TYPE | 100 | 68 | 81 | 60 |
P value = 0.00375 (Fisher's exact test), Q value = 0.047
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
19Q GAIN MUTATED | 30 | 20 | 6 |
19Q GAIN WILD-TYPE | 124 | 90 | 97 |
P value = 0.0248 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
19Q GAIN MUTATED | 15 | 5 | 24 | 12 |
19Q GAIN WILD-TYPE | 101 | 68 | 81 | 61 |
P value = 0.0239 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
19Q GAIN MUTATED | 21 | 16 | 19 |
19Q GAIN WILD-TYPE | 84 | 149 | 78 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
20P GAIN MUTATED | 76 | 52 | 19 |
20P GAIN WILD-TYPE | 78 | 58 | 84 |
P value = 0.00041 (Fisher's exact test), Q value = 0.011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
20P GAIN MUTATED | 34 | 41 | 15 | 56 |
20P GAIN WILD-TYPE | 77 | 81 | 19 | 43 |
P value = 0.00087 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
20P GAIN MUTATED | 33 | 24 | 53 | 37 |
20P GAIN WILD-TYPE | 83 | 49 | 52 | 36 |
P value = 0.0132 (Fisher's exact test), Q value = 0.099
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
20P GAIN MUTATED | 39 | 57 | 51 |
20P GAIN WILD-TYPE | 66 | 108 | 46 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
20Q GAIN MUTATED | 96 | 59 | 25 |
20Q GAIN WILD-TYPE | 58 | 51 | 78 |
P value = 0.00848 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
20Q GAIN MUTATED | 49 | 50 | 18 | 62 |
20Q GAIN WILD-TYPE | 62 | 72 | 16 | 37 |
P value = 0.0455 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 84 | 91 |
20Q GAIN MUTATED | 49 | 32 | 43 |
20Q GAIN WILD-TYPE | 37 | 52 | 48 |
P value = 0.0469 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
20Q GAIN MUTATED | 49 | 73 | 58 |
20Q GAIN WILD-TYPE | 56 | 92 | 39 |
P value = 0.00604 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
22Q GAIN MUTATED | 57 | 46 | 23 |
22Q GAIN WILD-TYPE | 97 | 64 | 80 |
P value = 0.043 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
22Q GAIN MUTATED | 6 | 6 | 26 | 18 | 13 | 4 | 24 | 13 | 4 |
22Q GAIN WILD-TYPE | 30 | 18 | 25 | 45 | 25 | 13 | 40 | 16 | 11 |
P value = 0.00489 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
XP GAIN MUTATED | 13 | 5 | 5 | 18 |
XP GAIN WILD-TYPE | 98 | 117 | 29 | 81 |
P value = 0.0126 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
XP GAIN MUTATED | 14 | 2 | 12 | 14 |
XP GAIN WILD-TYPE | 102 | 71 | 93 | 59 |
P value = 0.00975 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
XP GAIN MUTATED | 18 | 10 | 14 |
XP GAIN WILD-TYPE | 87 | 155 | 83 |
P value = 0.0118 (Fisher's exact test), Q value = 0.094
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 119 | 133 |
XP GAIN MUTATED | 3 | 15 | 21 |
XP GAIN WILD-TYPE | 82 | 104 | 112 |
P value = 0.0461 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
XQ GAIN MUTATED | 20 | 18 | 6 |
XQ GAIN WILD-TYPE | 134 | 92 | 97 |
P value = 0.00505 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
XQ GAIN MUTATED | 16 | 5 | 5 | 17 |
XQ GAIN WILD-TYPE | 95 | 117 | 29 | 82 |
P value = 0.00215 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
XQ GAIN MUTATED | 18 | 2 | 9 | 15 |
XQ GAIN WILD-TYPE | 98 | 71 | 96 | 58 |
P value = 0.00524 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
XQ GAIN MUTATED | 21 | 11 | 12 |
XQ GAIN WILD-TYPE | 84 | 154 | 85 |
P value = 0.00057 (Fisher's exact test), Q value = 0.015
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 119 | 133 |
XQ GAIN MUTATED | 1 | 16 | 21 |
XQ GAIN WILD-TYPE | 84 | 103 | 112 |
P value = 0.00284 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
1P LOSS MUTATED | 25 | 21 | 5 |
1P LOSS WILD-TYPE | 129 | 89 | 98 |
P value = 0.00563 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
1P LOSS MUTATED | 8 | 15 | 10 | 18 |
1P LOSS WILD-TYPE | 103 | 107 | 24 | 81 |
P value = 0.0097 (Fisher's exact test), Q value = 0.082
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 119 | 133 |
1P LOSS MUTATED | 7 | 27 | 16 |
1P LOSS WILD-TYPE | 78 | 92 | 117 |
P value = 0.0313 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
2P LOSS MUTATED | 16 | 28 | 6 |
2P LOSS WILD-TYPE | 89 | 137 | 91 |
P value = 0.00292 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 97 | 103 | 97 | 54 |
2P LOSS MUTATED | 8 | 23 | 7 | 11 |
2P LOSS WILD-TYPE | 89 | 80 | 90 | 43 |
P value = 0.0218 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
2P LOSS MUTATED | 22 | 5 | 17 | 5 |
2P LOSS WILD-TYPE | 110 | 88 | 71 | 33 |
P value = 0.0256 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
2Q LOSS MUTATED | 24 | 12 | 6 | 9 |
2Q LOSS WILD-TYPE | 87 | 110 | 28 | 90 |
P value = 0.0392 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 84 | 91 |
2Q LOSS MUTATED | 11 | 8 | 21 |
2Q LOSS WILD-TYPE | 75 | 76 | 70 |
P value = 0.00854 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 97 | 103 | 97 | 54 |
2Q LOSS MUTATED | 9 | 23 | 8 | 11 |
2Q LOSS WILD-TYPE | 88 | 80 | 89 | 43 |
P value = 0.0357 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
2Q LOSS MUTATED | 22 | 6 | 18 | 5 |
2Q LOSS WILD-TYPE | 110 | 87 | 70 | 33 |
P value = 0.00652 (Fisher's exact test), Q value = 0.062
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 97 | 103 | 97 | 54 |
3P LOSS MUTATED | 11 | 20 | 24 | 3 |
3P LOSS WILD-TYPE | 86 | 83 | 73 | 51 |
P value = 0.0234 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 97 | 103 | 97 | 54 |
3Q LOSS MUTATED | 9 | 21 | 17 | 3 |
3Q LOSS WILD-TYPE | 88 | 82 | 80 | 51 |
P value = 0.015 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
4P LOSS MUTATED | 24 | 26 | 30 |
4P LOSS WILD-TYPE | 81 | 139 | 67 |
P value = 0.00596 (Fisher's exact test), Q value = 0.059
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
4P LOSS MUTATED | 16 | 28 | 21 | 10 |
4P LOSS WILD-TYPE | 116 | 65 | 67 | 28 |
P value = 0.0163 (Fisher's exact test), Q value = 0.12
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
4Q LOSS MUTATED | 20 | 32 | 33 |
4Q LOSS WILD-TYPE | 85 | 133 | 64 |
P value = 0.00322 (Fisher's exact test), Q value = 0.043
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
4Q LOSS MUTATED | 17 | 30 | 22 | 11 |
4Q LOSS WILD-TYPE | 115 | 63 | 66 | 27 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
5P LOSS MUTATED | 14 | 51 | 14 |
5P LOSS WILD-TYPE | 140 | 59 | 89 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
5Q LOSS MUTATED | 18 | 60 | 19 |
5Q LOSS WILD-TYPE | 136 | 50 | 84 |
P value = 0.0345 (Fisher's exact test), Q value = 0.18
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 78 | 43 | 69 | 32 |
5Q LOSS MUTATED | 3 | 17 | 11 | 19 | 12 |
5Q LOSS WILD-TYPE | 36 | 61 | 32 | 50 | 20 |
P value = 0.00073 (Fisher's exact test), Q value = 0.018
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
6P LOSS MUTATED | 25 | 7 | 31 | 7 |
6P LOSS WILD-TYPE | 91 | 66 | 74 | 66 |
P value = 0.0125 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
6P LOSS MUTATED | 7 | 6 | 8 | 9 | 14 | 5 | 6 | 7 | 0 |
6P LOSS WILD-TYPE | 29 | 18 | 43 | 54 | 24 | 12 | 58 | 22 | 15 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
6Q LOSS MUTATED | 100 | 48 | 24 |
6Q LOSS WILD-TYPE | 54 | 62 | 79 |
P value = 0.0446 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
6Q LOSS MUTATED | 60 | 45 | 16 | 51 |
6Q LOSS WILD-TYPE | 51 | 77 | 18 | 48 |
P value = 0.00513 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
6Q LOSS MUTATED | 65 | 23 | 54 | 30 |
6Q LOSS WILD-TYPE | 51 | 50 | 51 | 43 |
P value = 0.0237 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
7Q LOSS MUTATED | 6 | 1 | 2 | 8 |
7Q LOSS WILD-TYPE | 110 | 72 | 103 | 65 |
P value = 0.0183 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 78 | 43 | 69 | 32 |
8P LOSS MUTATED | 2 | 14 | 6 | 21 | 7 |
8P LOSS WILD-TYPE | 37 | 64 | 37 | 48 | 25 |
P value = 0.0376 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
8P LOSS MUTATED | 26 | 7 | 15 | 18 |
8P LOSS WILD-TYPE | 90 | 66 | 90 | 55 |
P value = 0.0236 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
8Q LOSS MUTATED | 14 | 4 | 3 | 4 |
8Q LOSS WILD-TYPE | 97 | 118 | 31 | 95 |
P value = 0.0206 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 78 | 43 | 69 | 32 |
8Q LOSS MUTATED | 0 | 6 | 1 | 11 | 3 |
8Q LOSS WILD-TYPE | 39 | 72 | 42 | 58 | 29 |
P value = 0.021 (Fisher's exact test), Q value = 0.14
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 85 | 119 | 133 |
8Q LOSS MUTATED | 4 | 4 | 16 |
8Q LOSS WILD-TYPE | 81 | 115 | 117 |
P value = 0.0202 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
8Q LOSS MUTATED | 7 | 0 | 3 | 8 | 1 | 0 | 3 | 0 | 2 |
8Q LOSS WILD-TYPE | 29 | 24 | 48 | 55 | 37 | 17 | 61 | 29 | 13 |
P value = 0.00034 (Fisher's exact test), Q value = 0.01
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
9P LOSS MUTATED | 103 | 82 | 50 |
9P LOSS WILD-TYPE | 51 | 28 | 53 |
P value = 0.0351 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
9P LOSS MUTATED | 76 | 66 | 22 | 71 |
9P LOSS WILD-TYPE | 35 | 56 | 12 | 28 |
P value = 0.0112 (Fisher's exact test), Q value = 0.091
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 78 | 43 | 69 | 32 |
9P LOSS MUTATED | 20 | 55 | 31 | 35 | 25 |
9P LOSS WILD-TYPE | 19 | 23 | 12 | 34 | 7 |
P value = 0.0496 (Fisher's exact test), Q value = 0.22
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
9P LOSS MUTATED | 70 | 95 | 70 |
9P LOSS WILD-TYPE | 35 | 70 | 27 |
P value = 0.00818 (Fisher's exact test), Q value = 0.074
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
9P LOSS MUTATED | 19 | 18 | 28 | 35 | 25 | 14 | 43 | 17 | 15 |
9P LOSS WILD-TYPE | 17 | 6 | 23 | 28 | 13 | 3 | 21 | 12 | 0 |
P value = 0.0207 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
9Q LOSS MUTATED | 77 | 66 | 42 |
9Q LOSS WILD-TYPE | 77 | 44 | 61 |
P value = 0.0287 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
9Q LOSS MUTATED | 78 | 38 | 39 | 21 |
9Q LOSS WILD-TYPE | 54 | 55 | 49 | 17 |
P value = 0.00905 (Fisher's exact test), Q value = 0.078
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
9Q LOSS MUTATED | 14 | 18 | 22 | 28 | 21 | 10 | 28 | 16 | 13 |
9Q LOSS WILD-TYPE | 22 | 6 | 29 | 35 | 17 | 7 | 36 | 13 | 2 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
10P LOSS MUTATED | 93 | 86 | 25 |
10P LOSS WILD-TYPE | 61 | 24 | 78 |
P value = 0.00427 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
10P LOSS MUTATED | 58 | 58 | 18 | 70 |
10P LOSS WILD-TYPE | 53 | 64 | 16 | 29 |
P value = 0.0259 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
10P LOSS MUTATED | 55 | 36 | 69 | 44 |
10P LOSS WILD-TYPE | 61 | 37 | 36 | 29 |
P value = 0.00987 (Fisher's exact test), Q value = 0.083
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
10P LOSS MUTATED | 60 | 79 | 65 |
10P LOSS WILD-TYPE | 45 | 86 | 32 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
10Q LOSS MUTATED | 101 | 93 | 30 |
10Q LOSS WILD-TYPE | 53 | 17 | 73 |
P value = 0.00122 (Fisher's exact test), Q value = 0.024
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
10Q LOSS MUTATED | 65 | 63 | 20 | 76 |
10Q LOSS WILD-TYPE | 46 | 59 | 14 | 23 |
P value = 0.00522 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
10Q LOSS MUTATED | 59 | 40 | 74 | 51 |
10Q LOSS WILD-TYPE | 57 | 33 | 31 | 22 |
P value = 0.0029 (Fisher's exact test), Q value = 0.04
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
10Q LOSS MUTATED | 60 | 91 | 73 |
10Q LOSS WILD-TYPE | 45 | 74 | 24 |
P value = 0.00222 (Fisher's exact test), Q value = 0.035
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
11P LOSS MUTATED | 56 | 48 | 22 |
11P LOSS WILD-TYPE | 98 | 62 | 81 |
P value = 0.0017 (Fisher's exact test), Q value = 0.03
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
11Q LOSS MUTATED | 69 | 53 | 27 |
11Q LOSS WILD-TYPE | 85 | 57 | 76 |
P value = 0.0297 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
11Q LOSS MUTATED | 12 | 12 | 24 | 20 | 8 | 8 | 34 | 15 | 7 |
11Q LOSS WILD-TYPE | 24 | 12 | 27 | 43 | 30 | 9 | 30 | 14 | 8 |
P value = 0.0205 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
12Q LOSS MUTATED | 34 | 24 | 10 |
12Q LOSS WILD-TYPE | 120 | 86 | 93 |
P value = 0.00013 (Fisher's exact test), Q value = 0.0044
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
14Q LOSS MUTATED | 55 | 42 | 15 |
14Q LOSS WILD-TYPE | 99 | 68 | 88 |
P value = 0.0355 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 84 | 91 |
14Q LOSS MUTATED | 35 | 19 | 26 |
14Q LOSS WILD-TYPE | 51 | 65 | 65 |
P value = 0.0258 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
14Q LOSS MUTATED | 26 | 23 | 43 | 20 |
14Q LOSS WILD-TYPE | 90 | 50 | 62 | 53 |
P value = 0.00028 (Fisher's exact test), Q value = 0.0092
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
16P LOSS MUTATED | 44 | 12 | 13 |
16P LOSS WILD-TYPE | 110 | 98 | 90 |
P value = 0.0293 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
16P LOSS MUTATED | 29 | 19 | 9 | 12 |
16P LOSS WILD-TYPE | 82 | 103 | 25 | 87 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
16Q LOSS MUTATED | 70 | 14 | 21 |
16Q LOSS WILD-TYPE | 84 | 96 | 82 |
P value = 0.0315 (Fisher's exact test), Q value = 0.17
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
17P LOSS MUTATED | 48 | 42 | 10 | 24 |
17P LOSS WILD-TYPE | 63 | 80 | 24 | 75 |
P value = 0.0277 (Fisher's exact test), Q value = 0.16
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 |
---|---|---|---|---|---|
ALL | 39 | 78 | 43 | 69 | 32 |
17Q LOSS MUTATED | 2 | 19 | 11 | 8 | 6 |
17Q LOSS WILD-TYPE | 37 | 59 | 32 | 61 | 26 |
P value = 0.0397 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
19P LOSS MUTATED | 36 | 28 | 13 |
19P LOSS WILD-TYPE | 118 | 82 | 90 |
P value = 0.0372 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
19Q LOSS MUTATED | 37 | 24 | 12 |
19Q LOSS WILD-TYPE | 117 | 86 | 91 |
P value = 0.0124 (Fisher's exact test), Q value = 0.098
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 132 | 93 | 88 | 38 |
20P LOSS MUTATED | 5 | 6 | 12 | 0 |
20P LOSS WILD-TYPE | 127 | 87 | 76 | 38 |
P value = 0.0408 (Fisher's exact test), Q value = 0.2
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 86 | 84 | 91 |
20Q LOSS MUTATED | 0 | 1 | 5 |
20Q LOSS WILD-TYPE | 86 | 83 | 86 |
P value = 0.00525 (Fisher's exact test), Q value = 0.057
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
20Q LOSS MUTATED | 7 | 2 | 0 |
20Q LOSS WILD-TYPE | 98 | 163 | 97 |
P value = 0.0106 (Fisher's exact test), Q value = 0.087
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
21Q LOSS MUTATED | 37 | 23 | 10 |
21Q LOSS WILD-TYPE | 117 | 87 | 93 |
P value = 0.0159 (Fisher's exact test), Q value = 0.11
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 97 | 103 | 97 | 54 |
21Q LOSS MUTATED | 29 | 14 | 14 | 12 |
21Q LOSS WILD-TYPE | 68 | 89 | 83 | 42 |
P value = 0.036 (Fisher's exact test), Q value = 0.19
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
XP LOSS MUTATED | 42 | 36 | 18 |
XP LOSS WILD-TYPE | 112 | 74 | 85 |
P value = 1e-05 (Fisher's exact test), Q value = 0.00068
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
XP LOSS MUTATED | 39 | 13 | 14 | 30 |
XP LOSS WILD-TYPE | 72 | 109 | 20 | 69 |
P value = 0.0014 (Fisher's exact test), Q value = 0.026
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
XP LOSS MUTATED | 38 | 7 | 31 | 20 |
XP LOSS WILD-TYPE | 78 | 66 | 74 | 53 |
P value = 0.00179 (Fisher's exact test), Q value = 0.031
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
XP LOSS MUTATED | 38 | 29 | 29 |
XP LOSS WILD-TYPE | 67 | 136 | 68 |
P value = 0.0201 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 97 | 103 | 97 | 54 |
XP LOSS MUTATED | 25 | 38 | 20 | 9 |
XP LOSS WILD-TYPE | 72 | 65 | 77 | 45 |
P value = 0.0251 (Fisher's exact test), Q value = 0.15
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
XP LOSS MUTATED | 8 | 9 | 9 | 22 | 5 | 9 | 15 | 5 | 5 |
XP LOSS WILD-TYPE | 28 | 15 | 42 | 41 | 33 | 8 | 49 | 24 | 10 |
P value = 0.0469 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 154 | 110 | 103 |
XQ LOSS MUTATED | 42 | 33 | 17 |
XQ LOSS WILD-TYPE | 112 | 77 | 86 |
P value = 2e-05 (Fisher's exact test), Q value = 0.0011
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 111 | 122 | 34 | 99 |
XQ LOSS MUTATED | 36 | 12 | 13 | 31 |
XQ LOSS WILD-TYPE | 75 | 110 | 21 | 68 |
P value = 0.00092 (Fisher's exact test), Q value = 0.02
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 116 | 73 | 105 | 73 |
XQ LOSS MUTATED | 34 | 6 | 33 | 19 |
XQ LOSS WILD-TYPE | 82 | 67 | 72 | 54 |
P value = 0.00429 (Fisher's exact test), Q value = 0.051
nPatients | CLUS_1 | CLUS_2 | CLUS_3 |
---|---|---|---|
ALL | 105 | 165 | 97 |
XQ LOSS MUTATED | 34 | 28 | 30 |
XQ LOSS WILD-TYPE | 71 | 137 | 67 |
P value = 0.0463 (Fisher's exact test), Q value = 0.21
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 |
---|---|---|---|---|
ALL | 97 | 103 | 97 | 54 |
XQ LOSS MUTATED | 29 | 33 | 18 | 9 |
XQ LOSS WILD-TYPE | 68 | 70 | 79 | 45 |
P value = 0.0197 (Fisher's exact test), Q value = 0.13
nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4 | CLUS_5 | CLUS_6 | CLUS_7 | CLUS_8 | CLUS_9 |
---|---|---|---|---|---|---|---|---|---|
ALL | 36 | 24 | 51 | 63 | 38 | 17 | 64 | 29 | 15 |
XQ LOSS MUTATED | 11 | 5 | 9 | 21 | 5 | 10 | 15 | 5 | 5 |
XQ LOSS WILD-TYPE | 25 | 19 | 42 | 42 | 33 | 7 | 49 | 24 | 10 |
-
Copy number data file = broad_values_by_arm.txt from GISTIC pipeline
-
Processed Copy number data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SKCM-TM/22533835/transformed.cor.cli.txt
-
Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SKCM-TM/22546664/SKCM-TM.transferedmergedcluster.txt
-
Number of patients = 367
-
Number of significantly arm-level cnvs = 82
-
Number of molecular subtypes = 10
-
Exclude genes that fewer than K tumors have mutations, K = 3
For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R
For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.
In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.