Correlation between gene mutation status and molecular subtypes
Skin Cutaneous Melanoma (Metastatic)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
doi:10.7908/C1XD115M
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1XD115M
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 117 genes and 10 molecular subtypes across 290 patients, 2 significant findings detected with P value < 0.05 and Q value < 0.25.

  • BRAF mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 117 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 2 significant findings detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
BRAF 145 (50%) 145 0.418
(1.00) 		0.0104
(0.608) 		0.3
(1.00) 		0.371
(1.00) 		0.0762
(0.905) 		1e-05
(0.00585) 		0.0154
(0.72) 		0.194
(0.986) 		0.00554
(0.54) 		1e-05
(0.00585)
NRAS 87 (30%) 203 0.114
(0.986) 		0.0617
(0.848) 		0.256
(0.999) 		0.626
(1.00) 		0.719
(1.00) 		0.303
(1.00) 		0.947
(1.00) 		0.376
(1.00) 		0.00254
(0.524) 		0.0368
(0.798)
TP53 48 (17%) 242 0.0474
(0.835) 		0.242
(0.999) 		0.425
(1.00) 		0.255
(0.999) 		0.468
(1.00) 		0.249
(0.999) 		0.32
(1.00) 		0.613
(1.00) 		0.156
(0.986) 		0.363
(1.00)
CDKN2A 41 (14%) 249 0.273
(1.00) 		0.237
(0.999) 		0.127
(0.986) 		0.692
(1.00) 		0.903
(1.00) 		0.326
(1.00) 		0.857
(1.00) 		0.146
(0.986) 		0.814
(1.00) 		0.651
(1.00)
NF1 38 (13%) 252 0.348
(1.00) 		0.567
(1.00) 		0.583
(1.00) 		0.466
(1.00) 		0.7
(1.00) 		0.415
(1.00) 		0.239
(0.999) 		0.794
(1.00) 		0.313
(1.00) 		0.148
(0.986)
PTEN 25 (9%) 265 0.147
(0.986) 		0.0572
(0.848) 		0.24
(0.999) 		0.137
(0.986) 		0.0628
(0.848) 		0.134
(0.986) 		0.0648
(0.848) 		0.024
(0.769) 		0.103
(0.976) 		0.0918
(0.959)
RAC1 20 (7%) 270 0.194
(0.986) 		0.0864
(0.952) 		0.866
(1.00) 		0.453
(1.00) 		0.924
(1.00) 		1
(1.00) 		0.0984
(0.959) 		0.399
(1.00) 		0.747
(1.00) 		0.104
(0.977)
ARID2 37 (13%) 253 0.481
(1.00) 		0.016
(0.72) 		0.259
(0.999) 		0.968
(1.00) 		0.68
(1.00) 		0.329
(1.00) 		0.0258
(0.769) 		0.0984
(0.959) 		0.66
(1.00) 		0.114
(0.986)
C15ORF23 19 (7%) 271 0.357
(1.00) 		0.355
(1.00) 		0.697
(1.00) 		0.577
(1.00) 		0.878
(1.00) 		0.116
(0.986) 		0.911
(1.00) 		0.935
(1.00) 		0.839
(1.00) 		0.223
(0.999)
NUDT11 8 (3%) 282 0.348
(1.00) 		0.574
(1.00) 		0.512
(1.00) 		0.625
(1.00) 		0.0179
(0.769) 		0.535
(1.00) 		0.816
(1.00) 		0.868
(1.00) 		1
(1.00) 		0.954
(1.00)
ZFX 15 (5%) 275 0.591
(1.00) 		0.246
(0.999) 		0.705
(1.00) 		0.398
(1.00) 		0.263
(0.999) 		0.844
(1.00) 		0.355
(1.00) 		0.59
(1.00) 		0.256
(0.999) 		0.0576
(0.848)
SLC38A4 33 (11%) 257 0.971
(1.00) 		0.833
(1.00) 		0.462
(1.00) 		1
(1.00) 		0.842
(1.00) 		0.0112
(0.626) 		0.368
(1.00) 		0.644
(1.00) 		0.7
(1.00) 		0.286
(1.00)
FAM58A 6 (2%) 284 1
(1.00) 		0.427
(1.00) 		0.0264
(0.769) 		1
(1.00) 		0.941
(1.00) 		0.43
(1.00) 		0.149
(0.986) 		0.00694
(0.58) 		0.0877
(0.952) 		0.084
(0.952)
PPP6C 20 (7%) 270 0.958
(1.00) 		0.814
(1.00) 		0.983
(1.00) 		0.77
(1.00) 		0.383
(1.00) 		0.607
(1.00) 		0.213
(0.994) 		0.0252
(0.769) 		0.955
(1.00) 		0.684
(1.00)
C7ORF58 37 (13%) 253 0.975
(1.00) 		0.138
(0.986) 		0.555
(1.00) 		0.34
(1.00) 		0.822
(1.00) 		0.655
(1.00) 		0.873
(1.00) 		0.655
(1.00) 		0.22
(0.999) 		0.941
(1.00)
COL3A1 59 (20%) 231 0.414
(1.00) 		0.313
(1.00) 		0.687
(1.00) 		0.664
(1.00) 		0.698
(1.00) 		0.598
(1.00) 		0.867
(1.00) 		0.508
(1.00) 		0.711
(1.00) 		0.659
(1.00)
CDK4 8 (3%) 282 0.345
(1.00) 		0.257
(0.999) 		0.207
(0.986) 		0.449
(1.00) 		0.891
(1.00) 		0.47
(1.00) 		0.785
(1.00) 		0.247
(0.999) 		0.0233
(0.769) 		0.569
(1.00)
DSG3 48 (17%) 242 0.615
(1.00) 		0.973
(1.00) 		0.354
(1.00) 		0.393
(1.00) 		0.802
(1.00) 		0.978
(1.00) 		0.609
(1.00) 		0.641
(1.00) 		0.171
(0.986) 		0.301
(1.00)
MLL 40 (14%) 250 0.93
(1.00) 		0.277
(1.00) 		0.883
(1.00) 		0.827
(1.00) 		0.581
(1.00) 		0.623
(1.00) 		0.256
(0.999) 		0.82
(1.00) 		0.339
(1.00) 		0.322
(1.00)
DDX3X 20 (7%) 270 0.294
(1.00) 		0.973
(1.00) 		0.812
(1.00) 		0.245
(0.999) 		0.81
(1.00) 		0.146
(0.986) 		0.887
(1.00) 		0.548
(1.00) 		0.955
(1.00) 		0.468
(1.00)
HSD11B1 14 (5%) 276 0.574
(1.00) 		0.327
(1.00) 		0.758
(1.00) 		0.302
(1.00) 		0.881
(1.00) 		0.0984
(0.959) 		0.286
(1.00) 		0.961
(1.00) 		1
(1.00) 		0.236
(0.999)
ALPK2 47 (16%) 243 0.19
(0.986) 		0.143
(0.986) 		0.937
(1.00) 		0.792
(1.00) 		0.566
(1.00) 		0.86
(1.00) 		0.971
(1.00) 		0.673
(1.00) 		0.85
(1.00) 		0.867
(1.00)
ATP5F1 6 (2%) 284 0.584
(1.00) 		1
(1.00) 		0.139
(0.986) 		0.237
(0.999) 		0.941
(1.00) 		0.662
(1.00) 		0.949
(1.00) 		0.75
(1.00) 		0.392
(1.00) 		0.781
(1.00)
RPTN 42 (14%) 248 0.934
(1.00) 		0.0355
(0.798) 		0.342
(1.00) 		0.167
(0.986) 		0.0306
(0.769) 		0.868
(1.00) 		0.985
(1.00) 		0.518
(1.00) 		0.0603
(0.848) 		0.354
(1.00)
KRTAP5-10 10 (3%) 280 0.849
(1.00) 		0.48
(1.00) 		0.969
(1.00) 		0.376
(1.00) 		0.517
(1.00) 		0.849
(1.00) 		0.594
(1.00) 		0.0531
(0.848) 		0.17
(0.986) 		0.359
(1.00)
GML 11 (4%) 279 0.686
(1.00) 		0.65
(1.00) 		0.317
(1.00) 		0.0307
(0.769) 		0.427
(1.00) 		0.74
(1.00) 		0.692
(1.00) 		0.688
(1.00) 		0.631
(1.00) 		0.146
(0.986)
MAP2K1 15 (5%) 275 0.148
(0.986) 		0.0343
(0.798) 		0.348
(1.00) 		0.286
(1.00) 		0.512
(1.00) 		0.0634
(0.848) 		0.0979
(0.959) 		0.598
(1.00) 		0.0468
(0.835) 		0.498
(1.00)
IDH1 15 (5%) 275 1
(1.00) 		0.0157
(0.72) 		0.715
(1.00) 		0.467
(1.00) 		0.838
(1.00) 		0.749
(1.00) 		0.374
(1.00) 		0.636
(1.00) 		0.186
(0.986) 		0.597
(1.00)
KEL 36 (12%) 254 0.607
(1.00) 		0.0888
(0.953) 		0.894
(1.00) 		0.47
(1.00) 		0.169
(0.986) 		0.288
(1.00) 		0.465
(1.00) 		0.465
(1.00) 		0.244
(0.999) 		0.385
(1.00)
RQCD1 9 (3%) 281 0.188
(0.986) 		0.39
(1.00) 		0.584
(1.00) 		1
(1.00) 		0.189
(0.986) 		1
(1.00) 		1
(1.00) 		0.133
(0.986) 		0.312
(1.00) 		0.929
(1.00)
NGF 9 (3%) 281 0.189
(0.986) 		0.551
(1.00) 		0.578
(1.00) 		0.74
(1.00) 		0.69
(1.00) 		0.916
(1.00) 		0.672
(1.00) 		0.891
(1.00) 		0.156
(0.986) 		0.581
(1.00)
DMC1 11 (4%) 279 0.204
(0.986) 		0.457
(1.00) 		0.204
(0.986) 		0.635
(1.00) 		0.00493
(0.524) 		0.623
(1.00) 		0.00487
(0.524) 		0.6
(1.00) 		0.055
(0.848) 		0.176
(0.986)
TRERF1 26 (9%) 264 0.113
(0.986) 		0.44
(1.00) 		0.0385
(0.819) 		0.118
(0.986) 		0.285
(1.00) 		0.0659
(0.848) 		0.387
(1.00) 		0.724
(1.00) 		0.0327
(0.796) 		0.819
(1.00)
CYP3A5 13 (4%) 277 0.719
(1.00) 		0.545
(1.00) 		0.182
(0.986) 		0.216
(0.999) 		0.28
(1.00) 		0.378
(1.00) 		0.781
(1.00) 		0.448
(1.00) 		0.795
(1.00) 		0.958
(1.00)
NBPF1 26 (9%) 264 0.289
(1.00) 		0.346
(1.00) 		0.146
(0.986) 		0.419
(1.00) 		0.183
(0.986) 		0.752
(1.00) 		0.688
(1.00) 		0.828
(1.00) 		0.342
(1.00) 		0.989
(1.00)
ZNF780B 10 (3%) 280 0.275
(1.00) 		0.645
(1.00) 		0.408
(1.00) 		0.597
(1.00) 		0.97
(1.00) 		0.352
(1.00) 		0.719
(1.00) 		0.75
(1.00) 		0.693
(1.00) 		0.337
(1.00)
STK19 14 (5%) 276 0.738
(1.00) 		0.478
(1.00) 		0.546
(1.00) 		0.394
(1.00) 		0.814
(1.00) 		0.736
(1.00) 		0.187
(0.986) 		0.202
(0.986) 		0.546
(1.00) 		0.361
(1.00)
KYNU 16 (6%) 274 0.58
(1.00) 		0.115
(0.986) 		0.719
(1.00) 		1
(1.00) 		0.382
(1.00) 		0.15
(0.986) 		0.879
(1.00) 		0.884
(1.00) 		0.495
(1.00) 		0.56
(1.00)
ANO4 46 (16%) 244 0.187
(0.986) 		0.924
(1.00) 		0.0395
(0.826) 		0.106
(0.978) 		0.761
(1.00) 		0.786
(1.00) 		1
(1.00) 		0.99
(1.00) 		0.406
(1.00) 		0.833
(1.00)
SLC27A5 10 (3%) 280 0.466
(1.00) 		0.0455
(0.835) 		0.835
(1.00) 		0.511
(1.00) 		0.659
(1.00) 		0.847
(1.00) 		0.127
(0.986) 		0.51
(1.00) 		0.237
(0.999) 		0.0447
(0.835)
POTEG 27 (9%) 263 1
(1.00) 		0.0229
(0.769) 		0.508
(1.00) 		0.354
(1.00) 		0.155
(0.986) 		0.171
(0.986) 		0.0302
(0.769) 		0.648
(1.00) 		0.271
(1.00) 		0.952
(1.00)
TPTE 64 (22%) 226 0.605
(1.00) 		0.0297
(0.769) 		0.278
(1.00) 		0.509
(1.00) 		0.48
(1.00) 		0.696
(1.00) 		0.166
(0.986) 		0.953
(1.00) 		0.497
(1.00) 		0.266
(1.00)
USH2A 91 (31%) 199 0.269
(1.00) 		0.0104
(0.608) 		0.407
(1.00) 		0.31
(1.00) 		0.00475
(0.524) 		0.693
(1.00) 		0.0952
(0.959) 		0.269
(1.00) 		0.577
(1.00) 		0.602
(1.00)
XIRP2 98 (34%) 192 0.482
(1.00) 		0.129
(0.986) 		0.133
(0.986) 		0.0712
(0.896) 		0.00351
(0.524) 		0.831
(1.00) 		0.887
(1.00) 		0.872
(1.00) 		0.973
(1.00) 		0.867
(1.00)
THSD7B 92 (32%) 198 0.633
(1.00) 		0.03
(0.769) 		0.482
(1.00) 		0.621
(1.00) 		0.9
(1.00) 		0.255
(0.999) 		0.13
(0.986) 		0.884
(1.00) 		0.194
(0.986) 		0.583
(1.00)
USP17L2 22 (8%) 268 0.564
(1.00) 		0.451
(1.00) 		0.974
(1.00) 		0.547
(1.00) 		0.702
(1.00) 		0.85
(1.00) 		0.874
(1.00) 		0.191
(0.986) 		0.677
(1.00) 		0.633
(1.00)
S100A8 8 (3%) 282 0.492
(1.00) 		0.814
(1.00) 		0.293
(1.00) 		0.544
(1.00) 		0.604
(1.00) 		0.897
(1.00) 		0.962
(1.00) 		0.712
(1.00) 		0.577
(1.00) 		0.829
(1.00)
CTNNB1 16 (6%) 274 0.123
(0.986) 		0.0219
(0.769) 		0.262
(0.999) 		0.822
(1.00) 		0.0302
(0.769) 		0.31
(1.00) 		0.749
(1.00) 		0.677
(1.00) 		0.19
(0.986) 		0.637
(1.00)
USP9X 17 (6%) 273 0.774
(1.00) 		0.806
(1.00) 		0.137
(0.986) 		0.201
(0.986) 		0.957
(1.00) 		0.63
(1.00) 		0.179
(0.986) 		0.276
(1.00) 		0.0355
(0.798) 		0.592
(1.00)
C10ORF28 7 (2%) 283 0.646
(1.00) 		0.326
(1.00) 		0.207
(0.986) 		0.199
(0.986) 		0.835
(1.00) 		0.269
(1.00) 		0.323
(1.00) 		0.157
(0.986) 		0.85
(1.00) 		0.712
(1.00)
MAN1A1 15 (5%) 275 0.313
(1.00) 		0.91
(1.00) 		0.365
(1.00) 		0.542
(1.00) 		0.748
(1.00) 		0.253
(0.999) 		0.306
(1.00) 		0.0417
(0.835) 		0.132
(0.986) 		0.454
(1.00)
OXA1L 8 (3%) 282 1
(1.00) 		0.496
(1.00) 		0.919
(1.00) 		1
(1.00) 		0.568
(1.00) 		0.663
(1.00) 		0.807
(1.00) 		0.557
(1.00) 		0.0442
(0.835) 		0.651
(1.00)
NAP1L2 25 (9%) 265 0.746
(1.00) 		0.834
(1.00) 		0.977
(1.00) 		0.456
(1.00) 		0.196
(0.986) 		0.577
(1.00) 		0.731
(1.00) 		0.877
(1.00) 		0.0264
(0.769) 		0.638
(1.00)
MPP7 32 (11%) 258 0.0939
(0.959) 		0.0478
(0.835) 		0.369
(1.00) 		0.448
(1.00) 		0.0712
(0.896) 		0.209
(0.986) 		0.833
(1.00) 		0.814
(1.00) 		0.678
(1.00) 		0.205
(0.986)
BTK 15 (5%) 275 1
(1.00) 		0.418
(1.00) 		0.816
(1.00) 		0.825
(1.00) 		0.0859
(0.952) 		0.438
(1.00) 		0.642
(1.00) 		0.361
(1.00) 		0.302
(1.00) 		0.0516
(0.848)
SLC9A11 44 (15%) 246 0.141
(0.986) 		0.729
(1.00) 		0.656
(1.00) 		0.526
(1.00) 		0.914
(1.00) 		0.85
(1.00) 		0.978
(1.00) 		0.627
(1.00) 		0.977
(1.00) 		0.93
(1.00)
EMG1 7 (2%) 283 0.568
(1.00) 		0.949
(1.00) 		0.849
(1.00) 		1
(1.00) 		0.595
(1.00) 		0.134
(0.986) 		0.179
(0.986) 		1
(1.00) 		0.621
(1.00) 		0.868
(1.00)
SELP 33 (11%) 257 0.581
(1.00) 		0.0297
(0.769) 		0.38
(1.00) 		0.262
(0.999) 		0.0143
(0.72) 		0.161
(0.986) 		0.8
(1.00) 		0.477
(1.00) 		0.911
(1.00) 		0.72
(1.00)
PARM1 19 (7%) 271 0.249
(0.999) 		0.534
(1.00) 		0.191
(0.986) 		0.469
(1.00) 		0.68
(1.00) 		0.911
(1.00) 		0.488
(1.00) 		0.313
(1.00) 		0.71
(1.00) 		0.481
(1.00)
ACSBG1 13 (4%) 277 0.159
(0.986) 		0.33
(1.00) 		0.955
(1.00) 		0.274
(1.00) 		0.624
(1.00) 		0.242
(0.999) 		0.712
(1.00) 		0.307
(1.00) 		0.93
(1.00) 		0.804
(1.00)
CCK 6 (2%) 284 0.0309
(0.769) 		0.785
(1.00) 		0.576
(1.00) 		0.113
(0.986) 		0.812
(1.00) 		0.5
(1.00) 		0.349
(1.00) 		1
(1.00) 		0.58
(1.00) 		0.979
(1.00)
C1QTNF9 16 (6%) 274 0.251
(0.999) 		0.901
(1.00) 		0.916
(1.00) 		0.393
(1.00) 		0.402
(1.00) 		0.683
(1.00) 		0.159
(0.986) 		0.184
(0.986) 		1
(1.00) 		0.166
(0.986)
UBE2V2 3 (1%) 287 0.475
(1.00) 		0.302
(1.00) 		0.407
(1.00) 		0.351
(1.00) 		1
(1.00) 		1
(1.00) 		0.184
(0.986) 		0.586
(1.00)
BOLA1 3 (1%) 287 1
(1.00) 		0.744
(1.00) 		0.353
(1.00) 		0.793
(1.00) 		1
(1.00) 		0.663
(1.00) 		0.255
(0.999) 		0.811
(1.00)
IFNGR2 4 (1%) 286 0.218
(0.999) 		0.455
(1.00) 		0.84
(1.00) 		0.205
(0.986) 		0.593
(1.00) 		0.813
(1.00) 		0.401
(1.00) 		0.898
(1.00) 		0.681
(1.00) 		0.738
(1.00)
KRAS 6 (2%) 284 0.665
(1.00) 		0.0558
(0.848) 		0.831
(1.00) 		0.144
(0.986) 		0.201
(0.986) 		0.0755
(0.905) 		0.412
(1.00) 		0.156
(0.986) 		0.217
(0.999) 		0.184
(0.986)
ZNF595 8 (3%) 282 1
(1.00) 		0.113
(0.986) 		0.254
(0.999) 		0.896
(1.00) 		0.0443
(0.835) 		0.383
(1.00) 		0.735
(1.00) 		0.573
(1.00) 		0.0993
(0.961) 		0.00309
(0.524)
PRKAA2 25 (9%) 265 0.03
(0.769) 		0.0637
(0.848) 		0.825
(1.00) 		0.34
(1.00) 		0.522
(1.00) 		0.00387
(0.524) 		0.897
(1.00) 		0.802
(1.00) 		0.258
(0.999) 		0.223
(0.999)
MMP27 13 (4%) 277 0.771
(1.00) 		0.163
(0.986) 		0.785
(1.00) 		1
(1.00) 		0.841
(1.00) 		0.82
(1.00) 		0.843
(1.00) 		0.541
(1.00) 		0.861
(1.00) 		0.821
(1.00)
POLR2B 10 (3%) 280 1
(1.00) 		0.255
(0.999) 		0.0429
(0.835) 		0.016
(0.72) 		0.295
(1.00) 		0.71
(1.00) 		0.303
(1.00) 		0.397
(1.00) 		0.635
(1.00) 		0.336
(1.00)
CSN3 4 (1%) 286 0.00609
(0.548) 		0.8
(1.00) 		0.161
(0.986) 		0.213
(0.994) 		0.706
(1.00) 		0.293
(1.00) 		1
(1.00) 		0.823
(1.00) 		1
(1.00) 		0.707
(1.00)
CASP8 9 (3%) 281 0.525
(1.00) 		0.587
(1.00) 		0.36
(1.00) 		0.736
(1.00) 		0.213
(0.994) 		0.751
(1.00) 		0.754
(1.00) 		0.652
(1.00) 		0.281
(1.00) 		0.637
(1.00)
PPFIA1 16 (6%) 274 0.848
(1.00) 		0.643
(1.00) 		0.619
(1.00) 		0.863
(1.00) 		0.984
(1.00) 		1
(1.00) 		0.58
(1.00) 		0.934
(1.00) 		0.393
(1.00) 		0.319
(1.00)
ZNF490 16 (6%) 274 0.949
(1.00) 		0.678
(1.00) 		0.116
(0.986) 		0.0641
(0.848) 		0.341
(1.00) 		0.293
(1.00) 		0.622
(1.00) 		0.246
(0.999) 		1
(1.00) 		0.706
(1.00)
IL5RA 16 (6%) 274 0.801
(1.00) 		0.202
(0.986) 		0.491
(1.00) 		0.871
(1.00) 		0.926
(1.00) 		0.802
(1.00) 		0.39
(1.00) 		0.404
(1.00) 		0.154
(0.986) 		0.652
(1.00)
LILRB5 19 (7%) 271 0.189
(0.986) 		0.922
(1.00) 		0.152
(0.986) 		0.17
(0.986) 		0.72
(1.00) 		0.754
(1.00) 		0.821
(1.00) 		0.985
(1.00) 		0.434
(1.00) 		0.563
(1.00)
C10ORF72 20 (7%) 270 0.0102
(0.608) 		0.0363
(0.798) 		0.944
(1.00) 		0.395
(1.00) 		0.0605
(0.848) 		0.763
(1.00) 		0.52
(1.00) 		0.193
(0.986) 		0.628
(1.00) 		0.453
(1.00)
C3ORF71 4 (1%) 286 0.818
(1.00) 		0.414
(1.00) 		0.947
(1.00) 		1
(1.00) 		0.169
(0.986) 		0.124
(0.986) 		0.764
(1.00) 		0.105
(0.977) 		0.836
(1.00) 		0.0984
(0.959)
ZNF589 3 (1%) 287 0.786
(1.00) 		0.647
(1.00) 		0.88
(1.00) 		0.254
(0.999) 		0.637
(1.00) 		0.661
(1.00) 		0.466
(1.00) 		0.687
(1.00)
DSP 60 (21%) 230 0.406
(1.00) 		0.77
(1.00) 		0.897
(1.00) 		0.374
(1.00) 		0.957
(1.00) 		0.932
(1.00) 		0.805
(1.00) 		0.873
(1.00) 		0.452
(1.00) 		0.207
(0.986)
ZZZ3 3 (1%) 287 0.628
(1.00) 		0.65
(1.00) 		0.84
(1.00) 		0.302
(1.00) 		0.781
(1.00) 		0.164
(0.986) 		0.788
(1.00) 		0.516
(1.00) 		0.62
(1.00) 		0.647
(1.00)
MCART2 10 (3%) 280 0.301
(1.00) 		0.723
(1.00) 		0.54
(1.00) 		0.796
(1.00) 		0.454
(1.00) 		0.845
(1.00) 		0.779
(1.00) 		0.649
(1.00) 		0.831
(1.00) 		0.967
(1.00)
CD2 22 (8%) 268 0.961
(1.00) 		0.792
(1.00) 		0.623
(1.00) 		0.468
(1.00) 		0.857
(1.00) 		0.564
(1.00) 		0.682
(1.00) 		0.988
(1.00) 		0.739
(1.00) 		0.938
(1.00)
CD209 12 (4%) 278 0.386
(1.00) 		0.186
(0.986) 		0.00838
(0.608) 		0.697
(1.00) 		0.0461
(0.835) 		0.519
(1.00) 		0.576
(1.00) 		0.602
(1.00) 		0.653
(1.00) 		0.694
(1.00)
C2ORF16 29 (10%) 261 0.219
(0.999) 		0.717
(1.00) 		0.256
(0.999) 		0.244
(0.999) 		0.556
(1.00) 		0.0335
(0.798) 		0.641
(1.00) 		0.645
(1.00) 		0.0249
(0.769) 		0.863
(1.00)
GLRB 30 (10%) 260 0.114
(0.986) 		0.341
(1.00) 		0.874
(1.00) 		0.681
(1.00) 		0.548
(1.00) 		0.469
(1.00) 		0.823
(1.00) 		0.113
(0.986) 		0.521
(1.00) 		0.51
(1.00)
PKDREJ 30 (10%) 260 0.22
(0.999) 		0.34
(1.00) 		0.98
(1.00) 		0.962
(1.00) 		0.413
(1.00) 		0.856
(1.00) 		0.386
(1.00) 		0.795
(1.00) 		0.33
(1.00) 		0.116
(0.986)
PTPRT 86 (30%) 204 0.445
(1.00) 		0.532
(1.00) 		0.576
(1.00) 		0.881
(1.00) 		0.872
(1.00) 		0.404
(1.00) 		0.314
(1.00) 		0.0765
(0.905) 		0.0636
(0.848) 		0.123
(0.986)
FAM55C 6 (2%) 284 0.583
(1.00) 		1
(1.00) 		0.842
(1.00) 		0.205
(0.986) 		1
(1.00) 		0.429
(1.00) 		0.527
(1.00) 		0.749
(1.00) 		0.88
(1.00) 		0.287
(1.00)
NUDT4 5 (2%) 285 0.186
(0.986) 		0.622
(1.00) 		0.549
(1.00) 		0.862
(1.00) 		0.496
(1.00) 		0.607
(1.00) 		0.936
(1.00) 		0.245
(0.999) 		0.848
(1.00) 		0.208
(0.986)
MYPOP 7 (2%) 283 0.238
(0.999) 		0.95
(1.00) 		0.946
(1.00) 		0.69
(1.00) 		0.869
(1.00) 		0.489
(1.00) 		0.585
(1.00) 		0.148
(0.986) 		0.349
(1.00) 		0.648
(1.00)
MLL4 32 (11%) 258 0.643
(1.00) 		0.0424
(0.835) 		0.287
(1.00) 		0.527
(1.00) 		0.0951
(0.959) 		0.599
(1.00) 		0.402
(1.00) 		0.65
(1.00) 		0.193
(0.986) 		0.496
(1.00)
MMP1 14 (5%) 276 0.219
(0.999) 		0.263
(0.999) 		0.702
(1.00) 		0.895
(1.00) 		0.853
(1.00) 		1
(1.00) 		0.8
(1.00) 		0.0579
(0.848) 		0.722
(1.00) 		0.715
(1.00)
THEMIS 34 (12%) 256 0.0916
(0.959) 		0.277
(1.00) 		0.312
(1.00) 		1
(1.00) 		0.624
(1.00) 		0.918
(1.00) 		0.528
(1.00) 		0.23
(0.999) 		0.428
(1.00) 		0.895
(1.00)
ACO1 8 (3%) 282 0.605
(1.00) 		0.477
(1.00) 		0.729
(1.00) 		0.897
(1.00) 		0.604
(1.00) 		1
(1.00) 		0.105
(0.977) 		0.101
(0.972) 		0.658
(1.00) 		0.957
(1.00)
MUC7 17 (6%) 273 0.659
(1.00) 		0.131
(0.986) 		0.332
(1.00) 		0.931
(1.00) 		0.943
(1.00) 		0.25
(0.999) 		0.00353
(0.524) 		0.253
(0.999) 		0.164
(0.986) 		0.201
(0.986)
TP63 50 (17%) 240 0.981
(1.00) 		0.256
(0.999) 		0.0197
(0.769) 		0.16
(0.986) 		0.128
(0.986) 		1
(1.00) 		0.0552
(0.848) 		0.727
(1.00) 		0.264
(0.999) 		0.336
(1.00)
APCS 13 (4%) 277 0.239
(0.999) 		0.378
(1.00) 		0.489
(1.00) 		0.332
(1.00) 		0.0827
(0.948) 		0.178
(0.986) 		0.856
(1.00) 		0.376
(1.00) 		0.342
(1.00) 		0.79
(1.00)
GPX5 18 (6%) 272 0.746
(1.00) 		0.243
(0.999) 		0.353
(1.00) 		0.631
(1.00) 		0.882
(1.00) 		0.0879
(0.952) 		0.0756
(0.905) 		0.447
(1.00) 		0.722
(1.00) 		0.366
(1.00)
PDK4 7 (2%) 283 0.645
(1.00) 		0.82
(1.00) 		0.0916
(0.959) 		0.466
(1.00) 		0.241
(0.999) 		0.493
(1.00) 		0.845
(1.00) 		0.0539
(0.848) 		0.88
(1.00) 		0.287
(1.00)
EPS8 7 (2%) 283 0.568
(1.00) 		0.903
(1.00) 		0.648
(1.00) 		0.378
(1.00) 		0.475
(1.00) 		0.421
(1.00) 		0.915
(1.00) 		0.644
(1.00) 		0.434
(1.00) 		0.984
(1.00)
LUZP1 6 (2%) 284 0.773
(1.00) 		0.656
(1.00) 		0.417
(1.00) 		1
(1.00) 		0.601
(1.00) 		1
(1.00) 		0.415
(1.00) 		0.569
(1.00) 		0.163
(0.986) 		0.72
(1.00)
C10ORF118 7 (2%) 283 1
(1.00) 		0.745
(1.00) 		0.79
(1.00) 		1
(1.00) 		0.511
(1.00) 		0.888
(1.00) 		0.753
(1.00) 		0.908
(1.00) 		1
(1.00) 		0.228
(0.999)
OR51S1 30 (10%) 260 0.782
(1.00) 		0.968
(1.00) 		0.644
(1.00) 		0.841
(1.00) 		0.724
(1.00) 		0.257
(0.999) 		0.303
(1.00) 		0.894
(1.00) 		0.262
(0.999) 		0.00987
(0.608)
AMPD3 22 (8%) 268 0.817
(1.00) 		0.0536
(0.848) 		0.328
(1.00) 		0.525
(1.00) 		0.379
(1.00) 		0.588
(1.00) 		0.363
(1.00) 		0.858
(1.00) 		0.558
(1.00) 		0.208
(0.986)
CD300E 10 (3%) 280 1
(1.00) 		0.0609
(0.848) 		0.329
(1.00) 		0.739
(1.00) 		0.186
(0.986) 		0.269
(1.00) 		0.375
(1.00) 		0.507
(1.00) 		0.161
(0.986) 		0.353
(1.00)
SAG 11 (4%) 279 0.863
(1.00) 		0.624
(1.00) 		0.488
(1.00) 		0.0747
(0.905) 		0.124
(0.986) 		0.282
(1.00) 		0.71
(1.00) 		0.375
(1.00) 		0.86
(1.00) 		0.0737
(0.905)
DDX17 8 (3%) 282 1
(1.00) 		0.846
(1.00) 		0.643
(1.00) 		1
(1.00) 		0.926
(1.00) 		0.601
(1.00) 		0.0654
(0.848) 		0.732
(1.00) 		0.703
(1.00) 		0.0878
(0.952)
RUFY4 11 (4%) 279 0.156
(0.986) 		0.554
(1.00) 		0.792
(1.00) 		1
(1.00) 		0.728
(1.00) 		1
(1.00) 		0.772
(1.00) 		0.877
(1.00) 		0.929
(1.00) 		0.994
(1.00)
MAP3K5 20 (7%) 270 0.00443
(0.524) 		0.575
(1.00) 		0.848
(1.00) 		0.841
(1.00) 		0.00908
(0.608) 		0.407
(1.00) 		0.796
(1.00) 		0.408
(1.00) 		0.467
(1.00) 		0.549
(1.00)
NTN4 15 (5%) 275 0.84
(1.00) 		0.079
(0.925) 		0.409
(1.00) 		0.466
(1.00) 		0.826
(1.00) 		0.704
(1.00) 		0.792
(1.00) 		0.143
(0.986) 		0.707
(1.00) 		0.693
(1.00)
BCMO1 17 (6%) 273 0.273
(1.00) 		0.027
(0.769) 		0.785
(1.00) 		0.614
(1.00) 		0.798
(1.00) 		0.902
(1.00) 		0.632
(1.00) 		0.953
(1.00) 		0.439
(1.00) 		0.673
(1.00)
OR11H12 15 (5%) 275 0.594
(1.00) 		0.864
(1.00) 		0.698
(1.00) 		0.612
(1.00) 		0.95
(1.00) 		0.703
(1.00) 		0.427
(1.00) 		0.693
(1.00) 		0.478
(1.00) 		0.655
(1.00)
SI 67 (23%) 223 0.369
(1.00) 		0.439
(1.00) 		0.509
(1.00) 		0.0568
(0.848) 		0.485
(1.00) 		0.45
(1.00) 		0.863
(1.00) 		0.584
(1.00) 		0.283
(1.00) 		0.209
(0.986)
ADAM33 16 (6%) 274 0.583
(1.00) 		0.658
(1.00) 		0.392
(1.00) 		0.648
(1.00) 		0.652
(1.00) 		0.682
(1.00) 		0.887
(1.00) 		0.72
(1.00) 		1
(1.00) 		0.973
(1.00)
RICTOR 12 (4%) 278 0.417
(1.00) 		0.76
(1.00) 		0.447
(1.00) 		0.912
(1.00) 		0.914
(1.00) 		1
(1.00) 		0.508
(1.00) 		0.721
(1.00) 		0.629
(1.00) 		0.958
(1.00)
MED17 5 (2%) 285 0.0826
(0.948) 		0.67
(1.00) 		0.609
(1.00) 		0.842
(1.00) 		0.146
(0.986) 		0.225
(0.999) 		0.134
(0.986) 		0.284
(1.00) 		0.54
(1.00) 		0.0581
(0.848)
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.99

Table S1.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
NRAS MUTATED 30 31 26
NRAS WILD-TYPE 94 51 58
'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.85

Table S2.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
NRAS MUTATED 32 24 5 26
NRAS WILD-TYPE 50 74 25 54
'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
NRAS MUTATED 7 24 8 16 8
NRAS WILD-TYPE 24 37 31 38 14
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
NRAS MUTATED 25 19 19
NRAS WILD-TYPE 48 44 52
'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
NRAS MUTATED 28 16 25 18
NRAS WILD-TYPE 63 47 60 33
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
NRAS MUTATED 29 38 20
NRAS WILD-TYPE 51 93 59
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
NRAS MUTATED 24 23 21 15
NRAS WILD-TYPE 53 57 55 32
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NRAS MUTATED 35 21 17 10
NRAS WILD-TYPE 64 50 57 26
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00254 (Fisher's exact test), Q value = 0.52

Table S9.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
NRAS MUTATED 10 28 42
NRAS WILD-TYPE 56 69 64

Figure S1.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.8

Table S10.  Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
NRAS MUTATED 10 6 7 20 7 0 16 10 4
NRAS WILD-TYPE 15 15 37 27 25 11 33 18 8

Figure S2.  Get High-res Image Gene #1: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.83

Table S11.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
TP53 MUTATED 13 18 17
TP53 WILD-TYPE 111 64 67

Figure S3.  Get High-res Image Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
TP53 MUTATED 18 17 2 11
TP53 WILD-TYPE 64 81 28 69
'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
TP53 MUTATED 4 7 8 12 2
TP53 WILD-TYPE 27 54 31 42 20
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
TP53 MUTATED 16 8 9
TP53 WILD-TYPE 57 55 62
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
TP53 MUTATED 12 14 15 7
TP53 WILD-TYPE 79 49 70 44
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
TP53 MUTATED 10 27 11
TP53 WILD-TYPE 70 104 68
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S17.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
TP53 MUTATED 14 15 7 7
TP53 WILD-TYPE 63 65 69 40
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
TP53 MUTATED 19 9 11 4
TP53 WILD-TYPE 80 62 63 32
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.99

Table S19.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
TP53 MUTATED 11 10 21
TP53 WILD-TYPE 55 87 85
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
TP53 MUTATED 6 2 10 8 2 0 7 4 3
TP53 WILD-TYPE 19 19 34 39 30 11 42 24 9
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
CDKN2A MUTATED 15 16 10
CDKN2A WILD-TYPE 109 66 74
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
CDKN2A MUTATED 10 11 3 17
CDKN2A WILD-TYPE 72 87 27 63
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.99

Table S23.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
CDKN2A MUTATED 6 9 3 6 7
CDKN2A WILD-TYPE 25 52 36 48 15
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
CDKN2A MUTATED 9 11 11
CDKN2A WILD-TYPE 64 52 60
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S25.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
CDKN2A MUTATED 12 9 14 6
CDKN2A WILD-TYPE 79 54 71 45
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
CDKN2A MUTATED 11 15 15
CDKN2A WILD-TYPE 69 116 64
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
CDKN2A MUTATED 12 9 11 7
CDKN2A WILD-TYPE 65 71 65 40
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.99

Table S28.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CDKN2A MUTATED 20 9 6 4
CDKN2A WILD-TYPE 79 62 68 32
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
CDKN2A MUTATED 11 13 14
CDKN2A WILD-TYPE 55 84 92
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
CDKN2A MUTATED 3 2 8 3 6 2 7 4 3
CDKN2A WILD-TYPE 22 19 36 44 26 9 42 24 9
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S31.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
NF1 MUTATED 18 7 13
NF1 WILD-TYPE 106 75 71
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
NF1 MUTATED 14 10 3 11
NF1 WILD-TYPE 68 88 27 69
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S33.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
NF1 MUTATED 4 8 7 10 1
NF1 WILD-TYPE 27 53 32 44 21
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S34.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
NF1 MUTATED 8 9 13
NF1 WILD-TYPE 65 54 58
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
NF1 MUTATED 15 7 11 5
NF1 WILD-TYPE 76 56 74 46
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
NF1 MUTATED 14 15 9
NF1 WILD-TYPE 66 116 70
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
NF1 MUTATED 14 10 6 8
NF1 WILD-TYPE 63 70 70 39
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NF1 MUTATED 11 10 12 5
NF1 WILD-TYPE 88 61 62 31
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S39.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
NF1 MUTATED 11 9 16
NF1 WILD-TYPE 55 88 90
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.99

Table S40.  Gene #4: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
NF1 MUTATED 5 3 7 8 2 1 2 4 4
NF1 WILD-TYPE 20 18 37 39 30 10 47 24 8
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.99

Table S41.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
PTEN MUTATED 10 11 4
PTEN WILD-TYPE 114 71 80
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0572 (Fisher's exact test), Q value = 0.85

Table S42.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
PTEN MUTATED 5 5 2 13
PTEN WILD-TYPE 77 93 28 67
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S43.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
PTEN MUTATED 2 8 1 8 1
PTEN WILD-TYPE 29 53 38 46 21
'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.99

Table S44.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
PTEN MUTATED 11 3 6
PTEN WILD-TYPE 62 60 65
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.85

Table S45.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
PTEN MUTATED 4 4 8 9
PTEN WILD-TYPE 87 59 77 42
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.99

Table S46.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
PTEN MUTATED 8 7 10
PTEN WILD-TYPE 72 124 69
'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.85

Table S47.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
PTEN MUTATED 4 5 7 9
PTEN WILD-TYPE 73 75 69 38
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.77

Table S48.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PTEN MUTATED 11 5 2 7
PTEN WILD-TYPE 88 66 72 29

Figure S4.  Get High-res Image Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.98

Table S49.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
PTEN MUTATED 2 12 10
PTEN WILD-TYPE 64 85 96
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 0.96

Table S50.  Gene #5: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
PTEN MUTATED 1 1 0 5 5 0 6 5 1
PTEN WILD-TYPE 24 20 44 42 27 11 43 23 11
'RAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.99

Table S51.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
RAC1 MUTATED 8 3 9
RAC1 WILD-TYPE 116 79 75
'RAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.95

Table S52.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
RAC1 MUTATED 3 12 2 3
RAC1 WILD-TYPE 79 86 28 77
'RAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S53.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
RAC1 MUTATED 1 4 4 4 1
RAC1 WILD-TYPE 30 57 35 50 21
'RAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S54.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
RAC1 MUTATED 7 4 3
RAC1 WILD-TYPE 66 59 68
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
RAC1 MUTATED 5 5 6 4
RAC1 WILD-TYPE 86 58 79 47
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S56.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
RAC1 MUTATED 6 9 5
RAC1 WILD-TYPE 74 122 74
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 0.96

Table S57.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
RAC1 MUTATED 9 4 2 5
RAC1 WILD-TYPE 68 76 74 42
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
RAC1 MUTATED 6 7 3 4
RAC1 WILD-TYPE 93 64 71 32
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 1

Table S59.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
RAC1 MUTATED 5 5 8
RAC1 WILD-TYPE 61 92 98
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.98

Table S60.  Gene #6: 'RAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
RAC1 MUTATED 6 0 3 2 2 0 2 3 0
RAC1 WILD-TYPE 19 21 41 45 30 11 47 25 12
'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S61.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ARID2 MUTATED 19 10 8
ARID2 WILD-TYPE 105 72 76
'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.72

Table S62.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ARID2 MUTATED 19 8 2 8
ARID2 WILD-TYPE 63 90 28 72

Figure S5.  Get High-res Image Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S63.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ARID2 MUTATED 1 12 6 7 2
ARID2 WILD-TYPE 30 49 33 47 20
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S64.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ARID2 MUTATED 10 9 9
ARID2 WILD-TYPE 63 54 62
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S65.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ARID2 MUTATED 12 8 13 4
ARID2 WILD-TYPE 79 55 72 47
'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S66.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ARID2 MUTATED 14 15 8
ARID2 WILD-TYPE 66 116 71
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.77

Table S67.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ARID2 MUTATED 5 10 8 12
ARID2 WILD-TYPE 72 70 68 35

Figure S6.  Get High-res Image Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0984 (Fisher's exact test), Q value = 0.96

Table S68.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ARID2 MUTATED 13 6 7 9
ARID2 WILD-TYPE 86 65 67 27
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S69.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ARID2 MUTATED 7 15 13
ARID2 WILD-TYPE 59 82 93
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.99

Table S70.  Gene #7: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ARID2 MUTATED 2 5 2 7 4 0 5 7 3
ARID2 WILD-TYPE 23 16 42 40 28 11 44 21 9
'C15ORF23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S71.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
C15ORF23 MUTATED 6 8 5
C15ORF23 WILD-TYPE 118 74 79
'C15ORF23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S72.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
C15ORF23 MUTATED 6 9 0 4
C15ORF23 WILD-TYPE 76 89 30 76
'C15ORF23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
C15ORF23 MUTATED 3 5 1 3 2
C15ORF23 WILD-TYPE 28 56 38 51 20
'C15ORF23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S74.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
C15ORF23 MUTATED 7 3 4
C15ORF23 WILD-TYPE 66 60 67
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
C15ORF23 MUTATED 5 5 5 4
C15ORF23 WILD-TYPE 86 58 80 47
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.99

Table S76.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
C15ORF23 MUTATED 3 13 3
C15ORF23 WILD-TYPE 77 118 76
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S77.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
C15ORF23 MUTATED 4 6 4 2
C15ORF23 WILD-TYPE 73 74 72 45
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C15ORF23 MUTATED 6 4 5 1
C15ORF23 WILD-TYPE 93 67 69 35
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S79.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
C15ORF23 MUTATED 3 5 7
C15ORF23 WILD-TYPE 63 92 99
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S80.  Gene #8: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
C15ORF23 MUTATED 2 2 3 2 1 0 1 1 3
C15ORF23 WILD-TYPE 23 19 41 45 31 11 48 27 9
'NUDT11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S81.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
NUDT11 MUTATED 2 4 2
NUDT11 WILD-TYPE 122 78 82
'NUDT11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S82.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
NUDT11 MUTATED 1 4 0 3
NUDT11 WILD-TYPE 81 94 30 77
'NUDT11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S83.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
NUDT11 MUTATED 1 1 0 3 0
NUDT11 WILD-TYPE 30 60 39 51 22
'NUDT11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S84.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
NUDT11 MUTATED 3 1 1
NUDT11 WILD-TYPE 70 62 70
'NUDT11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.77

Table S85.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
NUDT11 MUTATED 0 4 1 3
NUDT11 WILD-TYPE 91 59 84 48

Figure S7.  Get High-res Image Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NUDT11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
NUDT11 MUTATED 1 5 2
NUDT11 WILD-TYPE 79 126 77
'NUDT11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
NUDT11 MUTATED 3 1 2 1
NUDT11 WILD-TYPE 74 79 74 46
'NUDT11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NUDT11 MUTATED 3 2 1 1
NUDT11 WILD-TYPE 96 69 73 35
'NUDT11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
NUDT11 MUTATED 2 2 3
NUDT11 WILD-TYPE 64 95 103
'NUDT11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.954 (Fisher's exact test), Q value = 1

Table S90.  Gene #9: 'NUDT11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
NUDT11 MUTATED 1 1 1 1 0 0 2 1 0
NUDT11 WILD-TYPE 24 20 43 46 32 11 47 27 12
'ZFX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S91.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ZFX MUTATED 5 4 6
ZFX WILD-TYPE 119 78 78
'ZFX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S92.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ZFX MUTATED 2 7 0 6
ZFX WILD-TYPE 80 91 30 74
'ZFX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S93.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ZFX MUTATED 1 2 2 5 1
ZFX WILD-TYPE 30 59 37 49 21
'ZFX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S94.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ZFX MUTATED 2 5 4
ZFX WILD-TYPE 71 58 67
'ZFX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S95.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ZFX MUTATED 4 4 2 5
ZFX WILD-TYPE 87 59 83 46
'ZFX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ZFX MUTATED 4 8 3
ZFX WILD-TYPE 76 123 76
'ZFX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S97.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ZFX MUTATED 3 7 2 3
ZFX WILD-TYPE 74 73 74 44
'ZFX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZFX MUTATED 7 2 5 1
ZFX WILD-TYPE 92 69 69 35
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S99.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ZFX MUTATED 4 2 7
ZFX WILD-TYPE 62 95 99
'ZFX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0576 (Fisher's exact test), Q value = 0.85

Table S100.  Gene #10: 'ZFX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ZFX MUTATED 1 0 3 5 1 1 0 0 2
ZFX WILD-TYPE 24 21 41 42 31 10 49 28 10
'SLC38A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S101.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
SLC38A4 MUTATED 15 9 9
SLC38A4 WILD-TYPE 109 73 75
'SLC38A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S102.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
SLC38A4 MUTATED 10 13 3 7
SLC38A4 WILD-TYPE 72 85 27 73
'SLC38A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
SLC38A4 MUTATED 6 7 2 7 3
SLC38A4 WILD-TYPE 25 54 37 47 19
'SLC38A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S104.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
SLC38A4 MUTATED 9 7 9
SLC38A4 WILD-TYPE 64 56 62
'SLC38A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S105.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
SLC38A4 MUTATED 9 9 10 5
SLC38A4 WILD-TYPE 82 54 75 46
'SLC38A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.63

Table S106.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
SLC38A4 MUTATED 3 22 8
SLC38A4 WILD-TYPE 77 109 71

Figure S8.  Get High-res Image Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S107.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
SLC38A4 MUTATED 10 7 6 8
SLC38A4 WILD-TYPE 67 73 70 39
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SLC38A4 MUTATED 8 9 10 4
SLC38A4 WILD-TYPE 91 62 64 32
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S109.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
SLC38A4 MUTATED 9 9 11
SLC38A4 WILD-TYPE 57 88 95
'SLC38A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S110.  Gene #11: 'SLC38A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
SLC38A4 MUTATED 5 3 7 2 3 0 3 4 2
SLC38A4 WILD-TYPE 20 18 37 45 29 11 46 24 10
'FAM58A MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S111.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
FAM58A MUTATED 3 1 2
FAM58A WILD-TYPE 121 81 82
'FAM58A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S112.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
FAM58A MUTATED 2 3 1 0
FAM58A WILD-TYPE 80 95 29 80
'FAM58A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.77

Table S113.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
FAM58A MUTATED 3 0 0 1 1
FAM58A WILD-TYPE 28 61 39 53 21

Figure S9.  Get High-res Image Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FAM58A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S114.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
FAM58A MUTATED 2 1 2
FAM58A WILD-TYPE 71 62 69
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S115.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
FAM58A MUTATED 2 2 1 1
FAM58A WILD-TYPE 89 61 84 50
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S116.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
FAM58A MUTATED 2 4 0
FAM58A WILD-TYPE 78 127 79
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.99

Table S117.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
FAM58A MUTATED 4 1 0 1
FAM58A WILD-TYPE 73 79 76 46
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00694 (Fisher's exact test), Q value = 0.58

Table S118.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
FAM58A MUTATED 0 0 5 1
FAM58A WILD-TYPE 99 71 69 35

Figure S10.  Get High-res Image Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0877 (Fisher's exact test), Q value = 0.95

Table S119.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
FAM58A MUTATED 4 1 1
FAM58A WILD-TYPE 62 96 105
'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.084 (Fisher's exact test), Q value = 0.95

Table S120.  Gene #12: 'FAM58A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
FAM58A MUTATED 0 1 4 0 0 0 0 1 0
FAM58A WILD-TYPE 25 20 40 47 32 11 49 27 12
'PPP6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S121.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
PPP6C MUTATED 8 6 6
PPP6C WILD-TYPE 116 76 78
'PPP6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S122.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
PPP6C MUTATED 6 6 1 7
PPP6C WILD-TYPE 76 92 29 73
'PPP6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S123.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
PPP6C MUTATED 2 5 2 3 1
PPP6C WILD-TYPE 29 56 37 51 21
'PPP6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S124.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
PPP6C MUTATED 6 3 4
PPP6C WILD-TYPE 67 60 67
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S125.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
PPP6C MUTATED 4 6 8 2
PPP6C WILD-TYPE 87 57 77 49
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S126.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
PPP6C MUTATED 4 9 7
PPP6C WILD-TYPE 76 122 72
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.99

Table S127.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
PPP6C MUTATED 4 5 4 7
PPP6C WILD-TYPE 73 75 72 40
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 0.77

Table S128.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PPP6C MUTATED 8 5 1 6
PPP6C WILD-TYPE 91 66 73 30

Figure S11.  Get High-res Image Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S129.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
PPP6C MUTATED 4 7 8
PPP6C WILD-TYPE 62 90 98
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S130.  Gene #13: 'PPP6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
PPP6C MUTATED 1 1 1 4 2 0 5 4 1
PPP6C WILD-TYPE 24 20 43 43 30 11 44 24 11
'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S131.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
C7ORF58 MUTATED 16 11 10
C7ORF58 WILD-TYPE 108 71 74
'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.99

Table S132.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
C7ORF58 MUTATED 13 7 3 14
C7ORF58 WILD-TYPE 69 91 27 66
'C7ORF58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S133.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
C7ORF58 MUTATED 5 10 6 5 1
C7ORF58 WILD-TYPE 26 51 33 49 21
'C7ORF58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S134.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
C7ORF58 MUTATED 12 9 6
C7ORF58 WILD-TYPE 61 54 65
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S135.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
C7ORF58 MUTATED 14 8 10 5
C7ORF58 WILD-TYPE 77 55 75 46
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S136.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
C7ORF58 MUTATED 8 19 10
C7ORF58 WILD-TYPE 72 112 69
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S137.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
C7ORF58 MUTATED 8 11 9 7
C7ORF58 WILD-TYPE 69 69 67 40
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S138.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C7ORF58 MUTATED 10 8 11 6
C7ORF58 WILD-TYPE 89 63 63 30
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S139.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
C7ORF58 MUTATED 11 8 15
C7ORF58 WILD-TYPE 55 89 91
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S140.  Gene #14: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
C7ORF58 MUTATED 2 2 7 7 3 2 5 5 1
C7ORF58 WILD-TYPE 23 19 37 40 29 9 44 23 11
'COL3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S141.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
COL3A1 MUTATED 28 18 13
COL3A1 WILD-TYPE 96 64 71
'COL3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S142.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
COL3A1 MUTATED 16 16 5 22
COL3A1 WILD-TYPE 66 82 25 58
'COL3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S143.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
COL3A1 MUTATED 4 14 9 10 6
COL3A1 WILD-TYPE 27 47 30 44 16
'COL3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S144.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
COL3A1 MUTATED 13 13 17
COL3A1 WILD-TYPE 60 50 54
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S145.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
COL3A1 MUTATED 17 11 21 10
COL3A1 WILD-TYPE 74 52 64 41
'COL3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S146.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
COL3A1 MUTATED 16 24 19
COL3A1 WILD-TYPE 64 107 60
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S147.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
COL3A1 MUTATED 16 14 15 11
COL3A1 WILD-TYPE 61 66 61 36
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S148.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
COL3A1 MUTATED 16 17 14 9
COL3A1 WILD-TYPE 83 54 60 27
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S149.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
COL3A1 MUTATED 13 23 20
COL3A1 WILD-TYPE 53 74 86
'COL3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S150.  Gene #15: 'COL3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
COL3A1 MUTATED 5 3 8 10 11 2 8 5 4
COL3A1 WILD-TYPE 20 18 36 37 21 9 41 23 8
'CDK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S151.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
CDK4 MUTATED 2 4 2
CDK4 WILD-TYPE 122 78 82
'CDK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S152.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
CDK4 MUTATED 1 4 2 1
CDK4 WILD-TYPE 81 94 28 79
'CDK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.99

Table S153.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
CDK4 MUTATED 0 3 0 1 2
CDK4 WILD-TYPE 31 58 39 53 20
'CDK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S154.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
CDK4 MUTATED 1 3 2
CDK4 WILD-TYPE 72 60 69
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S155.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
CDK4 MUTATED 2 2 2 2
CDK4 WILD-TYPE 89 61 83 49
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S156.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
CDK4 MUTATED 3 2 3
CDK4 WILD-TYPE 77 129 76
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S157.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
CDK4 MUTATED 2 1 3 1
CDK4 WILD-TYPE 75 79 73 46
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S158.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CDK4 MUTATED 1 4 1 1
CDK4 WILD-TYPE 98 67 73 35
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.77

Table S159.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
CDK4 MUTATED 0 6 1
CDK4 WILD-TYPE 66 91 105

Figure S12.  Get High-res Image Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S160.  Gene #16: 'CDK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
CDK4 MUTATED 0 2 0 1 1 0 2 1 0
CDK4 WILD-TYPE 25 19 44 46 31 11 47 27 12
'DSG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S161.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
DSG3 MUTATED 21 11 16
DSG3 WILD-TYPE 103 71 68
'DSG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S162.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
DSG3 MUTATED 14 16 4 14
DSG3 WILD-TYPE 68 82 26 66
'DSG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S163.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
DSG3 MUTATED 6 10 9 5 5
DSG3 WILD-TYPE 25 51 30 49 17
'DSG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S164.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
DSG3 MUTATED 9 13 13
DSG3 WILD-TYPE 64 50 58
'DSG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S165.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
DSG3 MUTATED 16 8 16 8
DSG3 WILD-TYPE 75 55 69 43
'DSG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S166.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
DSG3 MUTATED 14 21 13
DSG3 WILD-TYPE 66 110 66
'DSG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S167.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
DSG3 MUTATED 13 17 11 6
DSG3 WILD-TYPE 64 63 65 41
'DSG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S168.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
DSG3 MUTATED 15 13 15 4
DSG3 WILD-TYPE 84 58 59 32
'DSG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.99

Table S169.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
DSG3 MUTATED 16 15 14
DSG3 WILD-TYPE 50 82 92
'DSG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S170.  Gene #17: 'DSG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
DSG3 MUTATED 3 2 14 5 6 2 8 3 2
DSG3 WILD-TYPE 22 19 30 42 26 9 41 25 10
'MLL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S171.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MLL MUTATED 16 12 12
MLL WILD-TYPE 108 70 72
'MLL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S172.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MLL MUTATED 10 12 2 16
MLL WILD-TYPE 72 86 28 64
'MLL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.883 (Fisher's exact test), Q value = 1

Table S173.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MLL MUTATED 6 9 6 7 2
MLL WILD-TYPE 25 52 33 47 20
'MLL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S174.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MLL MUTATED 12 9 9
MLL WILD-TYPE 61 54 62
'MLL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S175.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MLL MUTATED 9 9 14 8
MLL WILD-TYPE 82 54 71 43
'MLL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S176.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MLL MUTATED 10 21 9
MLL WILD-TYPE 70 110 70
'MLL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S177.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MLL MUTATED 9 9 10 11
MLL WILD-TYPE 68 71 66 36
'MLL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S178.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MLL MUTATED 16 10 8 5
MLL WILD-TYPE 83 61 66 31
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S179.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MLL MUTATED 12 10 16
MLL WILD-TYPE 54 87 90
'MLL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S180.  Gene #18: 'MLL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MLL MUTATED 3 4 7 6 4 2 4 3 5
MLL WILD-TYPE 22 17 37 41 28 9 45 25 7
'DDX3X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 1

Table S181.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
DDX3X MUTATED 7 4 9
DDX3X WILD-TYPE 117 78 75
'DDX3X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S182.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
DDX3X MUTATED 6 6 2 6
DDX3X WILD-TYPE 76 92 28 74
'DDX3X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S183.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
DDX3X MUTATED 1 6 4 5 1
DDX3X WILD-TYPE 30 55 35 49 21
'DDX3X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S184.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
DDX3X MUTATED 3 6 8
DDX3X WILD-TYPE 70 57 63
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 1

Table S185.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
DDX3X MUTATED 7 5 4 4
DDX3X WILD-TYPE 84 58 81 47
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.99

Table S186.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
DDX3X MUTATED 8 10 2
DDX3X WILD-TYPE 72 121 77
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S187.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
DDX3X MUTATED 4 6 6 4
DDX3X WILD-TYPE 73 74 70 43
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S188.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
DDX3X MUTATED 7 3 6 4
DDX3X WILD-TYPE 92 68 68 32
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S189.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
DDX3X MUTATED 4 7 8
DDX3X WILD-TYPE 62 90 98
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S190.  Gene #19: 'DDX3X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
DDX3X MUTATED 1 1 5 3 0 0 5 2 2
DDX3X WILD-TYPE 24 20 39 44 32 11 44 26 10
'HSD11B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S191.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
HSD11B1 MUTATED 4 5 5
HSD11B1 WILD-TYPE 120 77 79
'HSD11B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S192.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
HSD11B1 MUTATED 5 7 0 2
HSD11B1 WILD-TYPE 77 91 30 78
'HSD11B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S193.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
HSD11B1 MUTATED 2 4 1 2 0
HSD11B1 WILD-TYPE 29 57 38 52 22
'HSD11B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S194.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
HSD11B1 MUTATED 2 5 2
HSD11B1 WILD-TYPE 71 58 69
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S195.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
HSD11B1 MUTATED 4 2 5 3
HSD11B1 WILD-TYPE 87 61 80 48
'HSD11B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0984 (Fisher's exact test), Q value = 0.96

Table S196.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
HSD11B1 MUTATED 1 10 3
HSD11B1 WILD-TYPE 79 121 76
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S197.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
HSD11B1 MUTATED 4 3 2 5
HSD11B1 WILD-TYPE 73 77 74 42
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S198.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
HSD11B1 MUTATED 5 4 3 2
HSD11B1 WILD-TYPE 94 67 71 34
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S199.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
HSD11B1 MUTATED 3 4 5
HSD11B1 WILD-TYPE 63 93 101
'HSD11B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S200.  Gene #20: 'HSD11B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
HSD11B1 MUTATED 2 0 2 0 1 0 3 2 2
HSD11B1 WILD-TYPE 23 21 42 47 31 11 46 26 10
'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.99

Table S201.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ALPK2 MUTATED 15 14 18
ALPK2 WILD-TYPE 109 68 66
'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.99

Table S202.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ALPK2 MUTATED 17 15 1 14
ALPK2 WILD-TYPE 65 83 29 66
'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S203.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ALPK2 MUTATED 5 11 6 9 2
ALPK2 WILD-TYPE 26 50 33 45 20
'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S204.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ALPK2 MUTATED 11 9 13
ALPK2 WILD-TYPE 62 54 58
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 1

Table S205.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ALPK2 MUTATED 15 11 16 5
ALPK2 WILD-TYPE 76 52 69 46
'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S206.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ALPK2 MUTATED 12 23 12
ALPK2 WILD-TYPE 68 108 67
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S207.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ALPK2 MUTATED 13 13 11 8
ALPK2 WILD-TYPE 64 67 65 39
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S208.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ALPK2 MUTATED 18 11 9 7
ALPK2 WILD-TYPE 81 60 65 29
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S209.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ALPK2 MUTATED 12 16 16
ALPK2 WILD-TYPE 54 81 90
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S210.  Gene #21: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ALPK2 MUTATED 4 6 6 7 4 1 8 5 3
ALPK2 WILD-TYPE 21 15 38 40 28 10 41 23 9
'ATP5F1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S211.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ATP5F1 MUTATED 2 1 3
ATP5F1 WILD-TYPE 122 81 81
'ATP5F1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S212.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ATP5F1 MUTATED 2 2 0 2
ATP5F1 WILD-TYPE 80 96 30 78
'ATP5F1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.99

Table S213.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ATP5F1 MUTATED 0 2 3 0 0
ATP5F1 WILD-TYPE 31 59 36 54 22
'ATP5F1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S214.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ATP5F1 MUTATED 0 2 3
ATP5F1 WILD-TYPE 73 61 68
'ATP5F1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S215.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ATP5F1 MUTATED 2 2 1 1
ATP5F1 WILD-TYPE 89 61 84 50
'ATP5F1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S216.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ATP5F1 MUTATED 1 4 1
ATP5F1 WILD-TYPE 79 127 78
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S217.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ATP5F1 MUTATED 1 2 2 1
ATP5F1 WILD-TYPE 76 78 74 46
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S218.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ATP5F1 MUTATED 3 2 1 0
ATP5F1 WILD-TYPE 96 69 73 36
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S219.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ATP5F1 MUTATED 3 1 2
ATP5F1 WILD-TYPE 63 96 104
'ATP5F1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S220.  Gene #22: 'ATP5F1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ATP5F1 MUTATED 0 0 2 1 1 0 1 0 1
ATP5F1 WILD-TYPE 25 21 42 46 31 11 48 28 11
'RPTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S221.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
RPTN MUTATED 17 12 13
RPTN WILD-TYPE 107 70 71
'RPTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.8

Table S222.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
RPTN MUTATED 20 11 2 9
RPTN WILD-TYPE 62 87 28 71

Figure S13.  Get High-res Image Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RPTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S223.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
RPTN MUTATED 5 7 10 6 3
RPTN WILD-TYPE 26 54 29 48 19
'RPTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.99

Table S224.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
RPTN MUTATED 7 9 15
RPTN WILD-TYPE 66 54 56
'RPTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.77

Table S225.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
RPTN MUTATED 11 12 17 2
RPTN WILD-TYPE 80 51 68 49

Figure S14.  Get High-res Image Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RPTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S226.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
RPTN MUTATED 10 20 12
RPTN WILD-TYPE 70 111 67
'RPTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.985 (Fisher's exact test), Q value = 1

Table S227.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
RPTN MUTATED 11 12 10 6
RPTN WILD-TYPE 66 68 66 41
'RPTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S228.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
RPTN MUTATED 16 12 8 3
RPTN WILD-TYPE 83 59 66 33
'RPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.85

Table S229.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
RPTN MUTATED 15 9 15
RPTN WILD-TYPE 51 88 91
'RPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S230.  Gene #23: 'RPTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
RPTN MUTATED 4 3 10 4 5 3 5 2 3
RPTN WILD-TYPE 21 18 34 43 27 8 44 26 9
'KRTAP5-10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S231.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
KRTAP5-10 MUTATED 5 3 2
KRTAP5-10 WILD-TYPE 119 79 82
'KRTAP5-10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S232.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
KRTAP5-10 MUTATED 2 3 0 5
KRTAP5-10 WILD-TYPE 80 95 30 75
'KRTAP5-10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S233.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
KRTAP5-10 MUTATED 1 2 1 1 1
KRTAP5-10 WILD-TYPE 30 59 38 53 21
'KRTAP5-10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S234.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
KRTAP5-10 MUTATED 4 1 1
KRTAP5-10 WILD-TYPE 69 62 70
'KRTAP5-10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S235.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
KRTAP5-10 MUTATED 2 1 4 3
KRTAP5-10 WILD-TYPE 89 62 81 48
'KRTAP5-10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S236.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
KRTAP5-10 MUTATED 2 5 3
KRTAP5-10 WILD-TYPE 78 126 76
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S237.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
KRTAP5-10 MUTATED 5 2 2 1
KRTAP5-10 WILD-TYPE 72 78 74 46
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0531 (Fisher's exact test), Q value = 0.85

Table S238.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
KRTAP5-10 MUTATED 5 5 0 0
KRTAP5-10 WILD-TYPE 94 66 74 36
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.99

Table S239.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
KRTAP5-10 MUTATED 4 1 5
KRTAP5-10 WILD-TYPE 62 96 101
'KRTAP5-10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S240.  Gene #24: 'KRTAP5-10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
KRTAP5-10 MUTATED 1 0 0 3 1 1 3 0 1
KRTAP5-10 WILD-TYPE 24 21 44 44 31 10 46 28 11
'GML MUTATION STATUS' versus 'CN_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S241.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
GML MUTATED 6 3 2
GML WILD-TYPE 118 79 82
'GML MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S242.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
GML MUTATED 4 3 2 2
GML WILD-TYPE 78 95 28 78
'GML MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S243.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
GML MUTATED 0 1 2 3 2
GML WILD-TYPE 31 60 37 51 20
'GML MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.77

Table S244.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
GML MUTATED 2 0 6
GML WILD-TYPE 71 63 65

Figure S15.  Get High-res Image Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GML MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S245.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
GML MUTATED 5 2 4 0
GML WILD-TYPE 86 61 81 51
'GML MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S246.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
GML MUTATED 4 5 2
GML WILD-TYPE 76 126 77
'GML MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S247.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
GML MUTATED 3 5 2 1
GML WILD-TYPE 74 75 74 46
'GML MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S248.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
GML MUTATED 4 3 4 0
GML WILD-TYPE 95 68 70 36
'GML MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S249.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
GML MUTATED 4 3 4
GML WILD-TYPE 62 94 102
'GML MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.99

Table S250.  Gene #25: 'GML MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
GML MUTATED 1 1 5 0 2 0 1 0 1
GML WILD-TYPE 24 20 39 47 30 11 48 28 11
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.99

Table S251.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MAP2K1 MUTATED 3 7 5
MAP2K1 WILD-TYPE 121 75 79
'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.8

Table S252.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MAP2K1 MUTATED 1 10 0 4
MAP2K1 WILD-TYPE 81 88 30 76

Figure S16.  Get High-res Image Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S253.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MAP2K1 MUTATED 3 5 1 2 3
MAP2K1 WILD-TYPE 28 56 38 52 19
'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S254.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MAP2K1 MUTATED 3 7 4
MAP2K1 WILD-TYPE 70 56 67
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S255.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MAP2K1 MUTATED 4 3 7 1
MAP2K1 WILD-TYPE 87 60 78 50
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0634 (Fisher's exact test), Q value = 0.85

Table S256.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MAP2K1 MUTATED 2 5 8
MAP2K1 WILD-TYPE 78 126 71
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.96

Table S257.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MAP2K1 MUTATED 2 2 8 3
MAP2K1 WILD-TYPE 75 78 68 44
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 1

Table S258.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MAP2K1 MUTATED 4 6 3 2
MAP2K1 WILD-TYPE 95 65 71 34
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.83

Table S259.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MAP2K1 MUTATED 1 10 4
MAP2K1 WILD-TYPE 65 87 102

Figure S17.  Get High-res Image Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S260.  Gene #26: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MAP2K1 MUTATED 0 1 2 1 4 1 4 2 0
MAP2K1 WILD-TYPE 25 20 42 46 28 10 45 26 12
'IDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S261.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
IDH1 MUTATED 7 4 4
IDH1 WILD-TYPE 117 78 80
'IDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.72

Table S262.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
IDH1 MUTATED 10 2 1 2
IDH1 WILD-TYPE 72 96 29 78

Figure S18.  Get High-res Image Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S263.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
IDH1 MUTATED 1 2 3 3 2
IDH1 WILD-TYPE 30 59 36 51 20
'IDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S264.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
IDH1 MUTATED 4 5 2
IDH1 WILD-TYPE 69 58 69
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S265.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
IDH1 MUTATED 6 3 3 3
IDH1 WILD-TYPE 85 60 82 48
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S266.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
IDH1 MUTATED 5 7 3
IDH1 WILD-TYPE 75 124 76
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S267.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
IDH1 MUTATED 2 7 3 2
IDH1 WILD-TYPE 75 73 73 45
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S268.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
IDH1 MUTATED 5 2 4 3
IDH1 WILD-TYPE 94 69 70 33
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.99

Table S269.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
IDH1 MUTATED 2 3 9
IDH1 WILD-TYPE 64 94 97
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S270.  Gene #27: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
IDH1 MUTATED 1 0 1 5 2 0 2 3 0
IDH1 WILD-TYPE 24 21 43 42 30 11 47 25 12
'KEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S271.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
KEL MUTATED 14 9 13
KEL WILD-TYPE 110 73 71
'KEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.95

Table S272.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
KEL MUTATED 15 14 2 5
KEL WILD-TYPE 67 84 28 75
'KEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S273.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
KEL MUTATED 5 7 7 7 3
KEL WILD-TYPE 26 54 32 47 19
'KEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S274.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
KEL MUTATED 9 7 13
KEL WILD-TYPE 64 56 58
'KEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.99

Table S275.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
KEL MUTATED 16 9 8 3
KEL WILD-TYPE 75 54 77 48
'KEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S276.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
KEL MUTATED 10 20 6
KEL WILD-TYPE 70 111 73
'KEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S277.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
KEL MUTATED 8 12 6 7
KEL WILD-TYPE 69 68 70 40
'KEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S278.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
KEL MUTATED 9 7 11 6
KEL WILD-TYPE 90 64 63 30
'KEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S279.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
KEL MUTATED 11 8 14
KEL WILD-TYPE 55 89 92
'KEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S280.  Gene #28: 'KEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
KEL MUTATED 4 0 9 6 3 0 5 4 2
KEL WILD-TYPE 21 21 35 41 29 11 44 24 10
'RQCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.99

Table S281.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
RQCD1 MUTATED 3 5 1
RQCD1 WILD-TYPE 121 77 83
'RQCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S282.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
RQCD1 MUTATED 4 1 1 3
RQCD1 WILD-TYPE 78 97 29 77
'RQCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S283.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
RQCD1 MUTATED 2 1 1 3 0
RQCD1 WILD-TYPE 29 60 38 51 22
'RQCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S284.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
RQCD1 MUTATED 3 2 2
RQCD1 WILD-TYPE 70 61 69
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.99

Table S285.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
RQCD1 MUTATED 2 2 1 4
RQCD1 WILD-TYPE 89 61 84 47
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S286.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
RQCD1 MUTATED 3 4 2
RQCD1 WILD-TYPE 77 127 77
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S287.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
RQCD1 MUTATED 3 3 2 1
RQCD1 WILD-TYPE 74 77 74 46
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.99

Table S288.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
RQCD1 MUTATED 6 2 0 1
RQCD1 WILD-TYPE 93 69 74 35
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S289.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
RQCD1 MUTATED 1 2 6
RQCD1 WILD-TYPE 65 95 100
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S290.  Gene #29: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
RQCD1 MUTATED 0 0 1 2 2 0 3 1 0
RQCD1 WILD-TYPE 25 21 43 45 30 11 46 27 12
'NGF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.99

Table S291.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
NGF MUTATED 3 5 1
NGF WILD-TYPE 121 77 83
'NGF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S292.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
NGF MUTATED 1 3 1 4
NGF WILD-TYPE 81 95 29 76
'NGF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S293.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
NGF MUTATED 1 4 0 2 1
NGF WILD-TYPE 30 57 39 52 21
'NGF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S294.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
NGF MUTATED 4 2 2
NGF WILD-TYPE 69 61 69
'NGF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S295.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
NGF MUTATED 2 1 4 2
NGF WILD-TYPE 89 62 81 49
'NGF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S296.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
NGF MUTATED 2 4 3
NGF WILD-TYPE 78 127 76
'NGF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S297.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
NGF MUTATED 2 1 3 2
NGF WILD-TYPE 75 79 73 45
'NGF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S298.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NGF MUTATED 3 1 3 1
NGF WILD-TYPE 96 70 71 35
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.99

Table S299.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
NGF MUTATED 0 5 3
NGF WILD-TYPE 66 92 103
'NGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S300.  Gene #30: 'NGF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
NGF MUTATED 1 0 0 3 0 0 3 1 0
NGF WILD-TYPE 24 21 44 44 32 11 46 27 12
'DMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.99

Table S301.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
DMC1 MUTATED 2 4 5
DMC1 WILD-TYPE 122 78 79
'DMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S302.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
DMC1 MUTATED 2 6 0 3
DMC1 WILD-TYPE 80 92 30 77
'DMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.99

Table S303.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
DMC1 MUTATED 3 4 0 1 1
DMC1 WILD-TYPE 28 57 39 53 21
'DMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S304.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
DMC1 MUTATED 3 4 2
DMC1 WILD-TYPE 70 59 69
'DMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00493 (Fisher's exact test), Q value = 0.52

Table S305.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
DMC1 MUTATED 0 1 8 2
DMC1 WILD-TYPE 91 62 77 49

Figure S19.  Get High-res Image Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S306.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
DMC1 MUTATED 2 5 4
DMC1 WILD-TYPE 78 126 75
'DMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00487 (Fisher's exact test), Q value = 0.52

Table S307.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
DMC1 MUTATED 2 0 8 1
DMC1 WILD-TYPE 75 80 68 46

Figure S20.  Get High-res Image Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S308.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
DMC1 MUTATED 3 5 2 1
DMC1 WILD-TYPE 96 66 72 35
'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.85

Table S309.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
DMC1 MUTATED 2 7 1
DMC1 WILD-TYPE 64 90 105
'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.99

Table S310.  Gene #31: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
DMC1 MUTATED 1 2 0 0 3 0 3 1 0
DMC1 WILD-TYPE 24 19 44 47 29 11 46 27 12
'TRERF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.99

Table S311.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
TRERF1 MUTATED 7 7 12
TRERF1 WILD-TYPE 117 75 72
'TRERF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S312.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
TRERF1 MUTATED 9 11 2 4
TRERF1 WILD-TYPE 73 87 28 76
'TRERF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.82

Table S313.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
TRERF1 MUTATED 8 6 3 4 0
TRERF1 WILD-TYPE 23 55 36 50 22

Figure S21.  Get High-res Image Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TRERF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.99

Table S314.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
TRERF1 MUTATED 12 4 5
TRERF1 WILD-TYPE 61 59 66
'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S315.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
TRERF1 MUTATED 7 9 8 2
TRERF1 WILD-TYPE 84 54 77 49
'TRERF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0659 (Fisher's exact test), Q value = 0.85

Table S316.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
TRERF1 MUTATED 6 17 3
TRERF1 WILD-TYPE 74 114 76
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S317.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
TRERF1 MUTATED 8 10 4 3
TRERF1 WILD-TYPE 69 70 72 44
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S318.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
TRERF1 MUTATED 11 7 5 2
TRERF1 WILD-TYPE 88 64 69 34
'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0327 (Fisher's exact test), Q value = 0.8

Table S319.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
TRERF1 MUTATED 9 3 11
TRERF1 WILD-TYPE 57 94 95

Figure S22.  Get High-res Image Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TRERF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S320.  Gene #32: 'TRERF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
TRERF1 MUTATED 3 2 4 5 1 1 4 1 2
TRERF1 WILD-TYPE 22 19 40 42 31 10 45 27 10
'CYP3A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S321.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
CYP3A5 MUTATED 5 5 3
CYP3A5 WILD-TYPE 119 77 81
'CYP3A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S322.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
CYP3A5 MUTATED 2 6 2 3
CYP3A5 WILD-TYPE 80 92 28 77
'CYP3A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.99

Table S323.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
CYP3A5 MUTATED 1 5 3 0 1
CYP3A5 WILD-TYPE 30 56 36 54 21
'CYP3A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.216 (Fisher's exact test), Q value = 1

Table S324.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
CYP3A5 MUTATED 1 4 5
CYP3A5 WILD-TYPE 72 59 66
'CYP3A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S325.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
CYP3A5 MUTATED 6 3 1 3
CYP3A5 WILD-TYPE 85 60 84 48
'CYP3A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S326.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
CYP3A5 MUTATED 6 4 3
CYP3A5 WILD-TYPE 74 127 76
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S327.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
CYP3A5 MUTATED 5 3 3 1
CYP3A5 WILD-TYPE 72 77 73 46
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S328.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CYP3A5 MUTATED 5 1 5 1
CYP3A5 WILD-TYPE 94 70 69 35
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S329.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
CYP3A5 MUTATED 3 3 5
CYP3A5 WILD-TYPE 63 94 101
'CYP3A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S330.  Gene #33: 'CYP3A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
CYP3A5 MUTATED 1 1 3 3 1 0 2 0 0
CYP3A5 WILD-TYPE 24 20 41 44 31 11 47 28 12
'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S331.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
BRAF MUTATED 64 44 37
BRAF WILD-TYPE 60 38 47
'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.61

Table S332.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
BRAF MUTATED 31 56 11 47
BRAF WILD-TYPE 51 42 19 33

Figure S23.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S333.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
BRAF MUTATED 19 31 22 21 11
BRAF WILD-TYPE 12 30 17 33 11
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S334.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
BRAF MUTATED 33 36 35
BRAF WILD-TYPE 40 27 36
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.9

Table S335.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
BRAF MUTATED 37 33 51 24
BRAF WILD-TYPE 54 30 34 27
'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0058

Table S336.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
BRAF MUTATED 22 70 53
BRAF WILD-TYPE 58 61 26

Figure S24.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.72

Table S337.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
BRAF MUTATED 28 38 46 27
BRAF WILD-TYPE 49 42 30 20

Figure S25.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.99

Table S338.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
BRAF MUTATED 49 36 31 23
BRAF WILD-TYPE 50 35 43 13
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00554 (Fisher's exact test), Q value = 0.54

Table S339.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
BRAF MUTATED 37 57 40
BRAF WILD-TYPE 29 40 66

Figure S26.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.0058

Table S340.  Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
BRAF MUTATED 3 10 26 13 24 10 25 16 7
BRAF WILD-TYPE 22 11 18 34 8 1 24 12 5

Figure S27.  Get High-res Image Gene #34: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NBPF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S341.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
NBPF1 MUTATED 10 5 11
NBPF1 WILD-TYPE 114 77 73
'NBPF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S342.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
NBPF1 MUTATED 10 5 3 8
NBPF1 WILD-TYPE 72 93 27 72
'NBPF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.99

Table S343.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
NBPF1 MUTATED 4 6 7 3 0
NBPF1 WILD-TYPE 27 55 32 51 22
'NBPF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S344.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
NBPF1 MUTATED 10 5 5
NBPF1 WILD-TYPE 63 58 66
'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.99

Table S345.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
NBPF1 MUTATED 13 4 7 2
NBPF1 WILD-TYPE 78 59 78 49
'NBPF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S346.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
NBPF1 MUTATED 9 11 6
NBPF1 WILD-TYPE 71 120 73
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S347.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
NBPF1 MUTATED 8 9 5 3
NBPF1 WILD-TYPE 69 71 71 44
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 1

Table S348.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NBPF1 MUTATED 7 7 8 3
NBPF1 WILD-TYPE 92 64 66 33
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S349.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
NBPF1 MUTATED 9 7 9
NBPF1 WILD-TYPE 57 90 97
'NBPF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.989 (Fisher's exact test), Q value = 1

Table S350.  Gene #35: 'NBPF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
NBPF1 MUTATED 2 1 6 4 2 1 5 3 1
NBPF1 WILD-TYPE 23 20 38 43 30 10 44 25 11
'ZNF780B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S351.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ZNF780B MUTATED 4 1 5
ZNF780B WILD-TYPE 120 81 79
'ZNF780B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S352.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ZNF780B MUTATED 3 3 2 2
ZNF780B WILD-TYPE 79 95 28 78
'ZNF780B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S353.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ZNF780B MUTATED 2 1 1 4 0
ZNF780B WILD-TYPE 29 60 38 50 22
'ZNF780B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S354.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ZNF780B MUTATED 4 1 3
ZNF780B WILD-TYPE 69 62 68
'ZNF780B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.97 (Fisher's exact test), Q value = 1

Table S355.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ZNF780B MUTATED 4 2 3 1
ZNF780B WILD-TYPE 87 61 82 50
'ZNF780B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S356.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ZNF780B MUTATED 2 7 1
ZNF780B WILD-TYPE 78 124 78
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S357.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ZNF780B MUTATED 3 1 3 2
ZNF780B WILD-TYPE 74 79 73 45
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S358.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZNF780B MUTATED 4 3 1 1
ZNF780B WILD-TYPE 95 68 73 35
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S359.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ZNF780B MUTATED 3 2 4
ZNF780B WILD-TYPE 63 95 102
'ZNF780B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S360.  Gene #36: 'ZNF780B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ZNF780B MUTATED 1 0 1 1 0 0 3 1 2
ZNF780B WILD-TYPE 24 21 43 46 32 11 46 27 10
'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S361.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
STK19 MUTATED 5 5 4
STK19 WILD-TYPE 119 77 80
'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S362.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
STK19 MUTATED 3 7 0 4
STK19 WILD-TYPE 79 91 30 76
'STK19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S363.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
STK19 MUTATED 2 3 1 1 2
STK19 WILD-TYPE 29 58 38 53 20
'STK19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S364.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
STK19 MUTATED 5 1 3
STK19 WILD-TYPE 68 62 68
'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S365.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
STK19 MUTATED 4 4 3 3
STK19 WILD-TYPE 87 59 82 48
'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S366.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
STK19 MUTATED 3 8 3
STK19 WILD-TYPE 77 123 76
'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.99

Table S367.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
STK19 MUTATED 5 6 1 1
STK19 WILD-TYPE 72 74 75 46
'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 0.99

Table S368.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
STK19 MUTATED 8 3 2 0
STK19 WILD-TYPE 91 68 72 36
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S369.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
STK19 MUTATED 3 3 7
STK19 WILD-TYPE 63 94 99
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S370.  Gene #37: 'STK19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
STK19 MUTATED 2 0 4 4 0 0 2 0 1
STK19 WILD-TYPE 23 21 40 43 32 11 47 28 11
'KYNU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S371.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
KYNU MUTATED 5 5 6
KYNU WILD-TYPE 119 77 78
'KYNU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.99

Table S372.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
KYNU MUTATED 4 2 3 7
KYNU WILD-TYPE 78 96 27 73
'KYNU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S373.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
KYNU MUTATED 3 3 1 2 1
KYNU WILD-TYPE 28 58 38 52 21
'KYNU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S374.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
KYNU MUTATED 4 3 3
KYNU WILD-TYPE 69 60 68
'KYNU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S375.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
KYNU MUTATED 4 2 8 2
KYNU WILD-TYPE 87 61 77 49
'KYNU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.99

Table S376.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
KYNU MUTATED 3 5 8
KYNU WILD-TYPE 77 126 71
'KYNU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S377.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
KYNU MUTATED 3 5 5 2
KYNU WILD-TYPE 74 75 71 45
'KYNU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S378.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
KYNU MUTATED 5 5 3 2
KYNU WILD-TYPE 94 66 71 34
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S379.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
KYNU MUTATED 5 6 4
KYNU WILD-TYPE 61 91 102
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S380.  Gene #38: 'KYNU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
KYNU MUTATED 2 0 2 3 4 0 1 2 1
KYNU WILD-TYPE 23 21 42 44 28 11 48 26 11
'ANO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.99

Table S381.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ANO4 MUTATED 19 9 18
ANO4 WILD-TYPE 105 73 66
'ANO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 1

Table S382.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ANO4 MUTATED 15 15 4 12
ANO4 WILD-TYPE 67 83 26 68
'ANO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.83

Table S383.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ANO4 MUTATED 6 15 9 4 1
ANO4 WILD-TYPE 25 46 30 50 21

Figure S28.  Get High-res Image Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ANO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.98

Table S384.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ANO4 MUTATED 7 13 15
ANO4 WILD-TYPE 66 50 56
'ANO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S385.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ANO4 MUTATED 14 10 16 6
ANO4 WILD-TYPE 77 53 69 45
'ANO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S386.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ANO4 MUTATED 11 21 14
ANO4 WILD-TYPE 69 110 65
'ANO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S387.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ANO4 MUTATED 13 13 12 7
ANO4 WILD-TYPE 64 67 64 40
'ANO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S388.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ANO4 MUTATED 15 12 12 6
ANO4 WILD-TYPE 84 59 62 30
'ANO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S389.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ANO4 MUTATED 12 12 20
ANO4 WILD-TYPE 54 85 86
'ANO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S390.  Gene #39: 'ANO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ANO4 MUTATED 5 2 6 10 8 1 7 4 1
ANO4 WILD-TYPE 20 19 38 37 24 10 42 24 11
'SLC27A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S391.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
SLC27A5 MUTATED 6 1 3
SLC27A5 WILD-TYPE 118 81 81
'SLC27A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 0.83

Table S392.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
SLC27A5 MUTATED 7 1 0 2
SLC27A5 WILD-TYPE 75 97 30 78

Figure S29.  Get High-res Image Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC27A5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S393.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
SLC27A5 MUTATED 1 1 2 2 1
SLC27A5 WILD-TYPE 30 60 37 52 21
'SLC27A5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S394.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
SLC27A5 MUTATED 1 3 3
SLC27A5 WILD-TYPE 72 60 68
'SLC27A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S395.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
SLC27A5 MUTATED 3 1 3 3
SLC27A5 WILD-TYPE 88 62 82 48
'SLC27A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S396.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
SLC27A5 MUTATED 2 5 3
SLC27A5 WILD-TYPE 78 126 76
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.99

Table S397.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
SLC27A5 MUTATED 3 1 1 4
SLC27A5 WILD-TYPE 74 79 75 43
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S398.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SLC27A5 MUTATED 3 3 1 2
SLC27A5 WILD-TYPE 96 68 73 34
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S399.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
SLC27A5 MUTATED 2 1 6
SLC27A5 WILD-TYPE 64 96 100
'SLC27A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0447 (Fisher's exact test), Q value = 0.83

Table S400.  Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
SLC27A5 MUTATED 1 0 0 2 1 1 0 2 2
SLC27A5 WILD-TYPE 24 21 44 45 31 10 49 26 10

Figure S30.  Get High-res Image Gene #40: 'SLC27A5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'POTEG MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S401.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
POTEG MUTATED 12 7 8
POTEG WILD-TYPE 112 75 76
'POTEG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.77

Table S402.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
POTEG MUTATED 10 5 0 12
POTEG WILD-TYPE 72 93 30 68

Figure S31.  Get High-res Image Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POTEG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S403.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
POTEG MUTATED 1 9 4 4 2
POTEG WILD-TYPE 30 52 35 50 20
'POTEG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S404.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
POTEG MUTATED 5 9 6
POTEG WILD-TYPE 68 54 65
'POTEG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.99

Table S405.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
POTEG MUTATED 11 2 7 7
POTEG WILD-TYPE 80 61 78 44
'POTEG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.99

Table S406.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
POTEG MUTATED 11 8 8
POTEG WILD-TYPE 69 123 71
'POTEG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.77

Table S407.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
POTEG MUTATED 2 12 9 3
POTEG WILD-TYPE 75 68 67 44

Figure S32.  Get High-res Image Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'POTEG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S408.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
POTEG MUTATED 12 5 7 2
POTEG WILD-TYPE 87 66 67 34
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 1

Table S409.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
POTEG MUTATED 3 9 13
POTEG WILD-TYPE 63 88 93
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S410.  Gene #41: 'POTEG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
POTEG MUTATED 1 2 4 5 3 0 7 2 1
POTEG WILD-TYPE 24 19 40 42 29 11 42 26 11
'TPTE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S411.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
TPTE MUTATED 27 21 16
TPTE WILD-TYPE 97 61 68
'TPTE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.77

Table S412.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
TPTE MUTATED 24 13 5 22
TPTE WILD-TYPE 58 85 25 58

Figure S33.  Get High-res Image Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TPTE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S413.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
TPTE MUTATED 3 14 11 14 3
TPTE WILD-TYPE 28 47 28 40 19
'TPTE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S414.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
TPTE MUTATED 14 17 14
TPTE WILD-TYPE 59 46 57
'TPTE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S415.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
TPTE MUTATED 16 17 21 10
TPTE WILD-TYPE 75 46 64 41
'TPTE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.696 (Fisher's exact test), Q value = 1

Table S416.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
TPTE MUTATED 16 28 20
TPTE WILD-TYPE 64 103 59
'TPTE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.99

Table S417.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
TPTE MUTATED 17 20 10 13
TPTE WILD-TYPE 60 60 66 34
'TPTE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S418.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
TPTE MUTATED 21 17 15 7
TPTE WILD-TYPE 78 54 59 29
'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S419.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
TPTE MUTATED 14 18 27
TPTE WILD-TYPE 52 79 79
'TPTE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S420.  Gene #42: 'TPTE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
TPTE MUTATED 4 3 10 15 6 3 6 7 5
TPTE WILD-TYPE 21 18 34 32 26 8 43 21 7
'USH2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S421.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
USH2A MUTATED 33 27 31
USH2A WILD-TYPE 91 55 53
'USH2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.61

Table S422.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
USH2A MUTATED 37 29 8 17
USH2A WILD-TYPE 45 69 22 63

Figure S34.  Get High-res Image Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USH2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S423.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
USH2A MUTATED 10 22 16 13 9
USH2A WILD-TYPE 21 39 23 41 13
'USH2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S424.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
USH2A MUTATED 20 22 28
USH2A WILD-TYPE 53 41 43
'USH2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00475 (Fisher's exact test), Q value = 0.52

Table S425.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
USH2A MUTATED 33 24 28 6
USH2A WILD-TYPE 58 39 57 45

Figure S35.  Get High-res Image Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USH2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S426.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
USH2A MUTATED 25 44 22
USH2A WILD-TYPE 55 87 57
'USH2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0952 (Fisher's exact test), Q value = 0.96

Table S427.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
USH2A MUTATED 24 30 16 18
USH2A WILD-TYPE 53 50 60 29
'USH2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S428.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
USH2A MUTATED 26 20 28 14
USH2A WILD-TYPE 73 51 46 22
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S429.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
USH2A MUTATED 23 27 35
USH2A WILD-TYPE 43 70 71
'USH2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S430.  Gene #43: 'USH2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
USH2A MUTATED 7 6 18 14 9 4 11 10 6
USH2A WILD-TYPE 18 15 26 33 23 7 38 18 6
'XIRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S431.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
XIRP2 MUTATED 37 30 31
XIRP2 WILD-TYPE 87 52 53
'XIRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.99

Table S432.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
XIRP2 MUTATED 35 31 6 26
XIRP2 WILD-TYPE 47 67 24 54
'XIRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.99

Table S433.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
XIRP2 MUTATED 9 26 17 13 10
XIRP2 WILD-TYPE 22 35 22 41 12
'XIRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0712 (Fisher's exact test), Q value = 0.9

Table S434.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
XIRP2 MUTATED 19 27 29
XIRP2 WILD-TYPE 54 36 42
'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00351 (Fisher's exact test), Q value = 0.52

Table S435.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
XIRP2 MUTATED 42 17 30 9
XIRP2 WILD-TYPE 49 46 55 42

Figure S36.  Get High-res Image Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S436.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
XIRP2 MUTATED 29 44 25
XIRP2 WILD-TYPE 51 87 54
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S437.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
XIRP2 MUTATED 25 27 24 18
XIRP2 WILD-TYPE 52 53 52 29
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S438.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
XIRP2 MUTATED 31 24 25 14
XIRP2 WILD-TYPE 68 47 49 22
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S439.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
XIRP2 MUTATED 22 34 36
XIRP2 WILD-TYPE 44 63 70
'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S440.  Gene #44: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
XIRP2 MUTATED 8 5 17 14 10 3 18 11 6
XIRP2 WILD-TYPE 17 16 27 33 22 8 31 17 6
'THSD7B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S441.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
THSD7B MUTATED 38 24 30
THSD7B WILD-TYPE 86 58 54
'THSD7B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.77

Table S442.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
THSD7B MUTATED 34 34 6 18
THSD7B WILD-TYPE 48 64 24 62

Figure S37.  Get High-res Image Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THSD7B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 1

Table S443.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
THSD7B MUTATED 13 24 12 14 8
THSD7B WILD-TYPE 18 37 27 40 14
'THSD7B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S444.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
THSD7B MUTATED 22 24 25
THSD7B WILD-TYPE 51 39 46
'THSD7B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 1

Table S445.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
THSD7B MUTATED 28 18 29 17
THSD7B WILD-TYPE 63 45 56 34
'THSD7B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S446.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
THSD7B MUTATED 21 48 23
THSD7B WILD-TYPE 59 83 56
'THSD7B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.99

Table S447.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
THSD7B MUTATED 17 27 30 15
THSD7B WILD-TYPE 60 53 46 32
'THSD7B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S448.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
THSD7B MUTATED 34 23 22 10
THSD7B WILD-TYPE 65 48 52 26
'THSD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.99

Table S449.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
THSD7B MUTATED 16 30 40
THSD7B WILD-TYPE 50 67 66
'THSD7B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S450.  Gene #45: 'THSD7B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
THSD7B MUTATED 5 5 16 16 13 2 15 8 6
THSD7B WILD-TYPE 20 16 28 31 19 9 34 20 6
'USP17L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S451.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
USP17L2 MUTATED 7 7 8
USP17L2 WILD-TYPE 117 75 76
'USP17L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S452.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
USP17L2 MUTATED 8 9 2 3
USP17L2 WILD-TYPE 74 89 28 77
'USP17L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S453.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
USP17L2 MUTATED 2 6 3 5 1
USP17L2 WILD-TYPE 29 55 36 49 21
'USP17L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S454.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
USP17L2 MUTATED 8 5 4
USP17L2 WILD-TYPE 65 58 67
'USP17L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S455.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
USP17L2 MUTATED 8 6 6 2
USP17L2 WILD-TYPE 83 57 79 49
'USP17L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S456.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
USP17L2 MUTATED 7 10 5
USP17L2 WILD-TYPE 73 121 74
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S457.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
USP17L2 MUTATED 6 7 6 2
USP17L2 WILD-TYPE 71 73 70 45
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.99

Table S458.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
USP17L2 MUTATED 8 9 3 1
USP17L2 WILD-TYPE 91 62 71 35
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S459.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
USP17L2 MUTATED 5 6 10
USP17L2 WILD-TYPE 61 91 96
'USP17L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S460.  Gene #46: 'USP17L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
USP17L2 MUTATED 4 3 4 4 2 0 2 1 1
USP17L2 WILD-TYPE 21 18 40 43 30 11 47 27 11
'S100A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S461.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
S100A8 MUTATED 5 2 1
S100A8 WILD-TYPE 119 80 83
'S100A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S462.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
S100A8 MUTATED 2 4 0 2
S100A8 WILD-TYPE 80 94 30 78
'S100A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S463.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
S100A8 MUTATED 0 5 2 1 0
S100A8 WILD-TYPE 31 56 37 53 22
'S100A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 1

Table S464.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
S100A8 MUTATED 2 4 2
S100A8 WILD-TYPE 71 59 69
'S100A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S465.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
S100A8 MUTATED 4 2 2 0
S100A8 WILD-TYPE 87 61 83 51
'S100A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S466.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
S100A8 MUTATED 3 3 2
S100A8 WILD-TYPE 77 128 77
'S100A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S467.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
S100A8 MUTATED 3 2 2 1
S100A8 WILD-TYPE 74 78 74 46
'S100A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S468.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
S100A8 MUTATED 3 3 1 1
S100A8 WILD-TYPE 96 68 73 35
'S100A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S469.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
S100A8 MUTATED 2 3 1
S100A8 WILD-TYPE 64 94 105
'S100A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S470.  Gene #47: 'S100A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
S100A8 MUTATED 1 1 1 1 1 0 0 1 0
S100A8 WILD-TYPE 24 20 43 46 31 11 49 27 12
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.99

Table S471.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
CTNNB1 MUTATED 11 3 2
CTNNB1 WILD-TYPE 113 79 82
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.77

Table S472.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
CTNNB1 MUTATED 10 4 1 1
CTNNB1 WILD-TYPE 72 94 29 79

Figure S38.  Get High-res Image Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S473.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
CTNNB1 MUTATED 0 4 4 5 0
CTNNB1 WILD-TYPE 31 57 35 49 22
'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S474.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
CTNNB1 MUTATED 4 5 4
CTNNB1 WILD-TYPE 69 58 67
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.77

Table S475.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
CTNNB1 MUTATED 10 2 4 0
CTNNB1 WILD-TYPE 81 61 81 51

Figure S39.  Get High-res Image Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S476.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
CTNNB1 MUTATED 7 5 4
CTNNB1 WILD-TYPE 73 126 75
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S477.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
CTNNB1 MUTATED 5 5 3 1
CTNNB1 WILD-TYPE 72 75 73 46
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S478.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CTNNB1 MUTATED 3 4 5 2
CTNNB1 WILD-TYPE 96 67 69 34
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.99

Table S479.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
CTNNB1 MUTATED 2 3 9
CTNNB1 WILD-TYPE 64 94 97
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S480.  Gene #48: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
CTNNB1 MUTATED 0 0 3 5 2 1 2 1 0
CTNNB1 WILD-TYPE 25 21 41 42 30 10 47 27 12
'USP9X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S481.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
USP9X MUTATED 6 5 6
USP9X WILD-TYPE 118 77 78
'USP9X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S482.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
USP9X MUTATED 6 4 2 5
USP9X WILD-TYPE 76 94 28 75
'USP9X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.99

Table S483.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
USP9X MUTATED 4 1 3 4 0
USP9X WILD-TYPE 27 60 36 50 22
'USP9X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.99

Table S484.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
USP9X MUTATED 6 1 5
USP9X WILD-TYPE 67 62 66
'USP9X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S485.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
USP9X MUTATED 6 4 4 3
USP9X WILD-TYPE 85 59 81 48
'USP9X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S486.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
USP9X MUTATED 5 6 6
USP9X WILD-TYPE 75 125 73
'USP9X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.99

Table S487.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
USP9X MUTATED 6 7 4 0
USP9X WILD-TYPE 71 73 72 47
'USP9X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 1

Table S488.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
USP9X MUTATED 5 6 6 0
USP9X WILD-TYPE 94 65 68 36
'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.8

Table S489.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
USP9X MUTATED 8 2 7
USP9X WILD-TYPE 58 95 99

Figure S40.  Get High-res Image Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'USP9X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S490.  Gene #49: 'USP9X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
USP9X MUTATED 2 0 5 4 2 1 3 0 0
USP9X WILD-TYPE 23 21 39 43 30 10 46 28 12
'C10ORF28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S491.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
C10ORF28 MUTATED 2 2 3
C10ORF28 WILD-TYPE 122 80 81
'C10ORF28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S492.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
C10ORF28 MUTATED 1 3 2 1
C10ORF28 WILD-TYPE 81 95 28 79
'C10ORF28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.99

Table S493.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
C10ORF28 MUTATED 2 1 2 0 0
C10ORF28 WILD-TYPE 29 60 37 54 22
'C10ORF28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.99

Table S494.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
C10ORF28 MUTATED 2 3 0
C10ORF28 WILD-TYPE 71 60 71
'C10ORF28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S495.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
C10ORF28 MUTATED 3 2 1 1
C10ORF28 WILD-TYPE 88 61 84 50
'C10ORF28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S496.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
C10ORF28 MUTATED 2 5 0
C10ORF28 WILD-TYPE 78 126 79
'C10ORF28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S497.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
C10ORF28 MUTATED 1 4 1 0
C10ORF28 WILD-TYPE 76 76 75 47
'C10ORF28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.99

Table S498.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C10ORF28 MUTATED 2 0 4 0
C10ORF28 WILD-TYPE 97 71 70 36
'C10ORF28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S499.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
C10ORF28 MUTATED 1 1 3
C10ORF28 WILD-TYPE 65 96 103
'C10ORF28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S500.  Gene #50: 'C10ORF28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
C10ORF28 MUTATED 0 0 3 1 0 0 1 0 0
C10ORF28 WILD-TYPE 25 21 41 46 32 11 48 28 12
'MAN1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S501.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MAN1A1 MUTATED 5 3 7
MAN1A1 WILD-TYPE 119 79 77
'MAN1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 1

Table S502.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MAN1A1 MUTATED 5 6 1 3
MAN1A1 WILD-TYPE 77 92 29 77
'MAN1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 1

Table S503.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MAN1A1 MUTATED 4 3 2 2 0
MAN1A1 WILD-TYPE 27 58 37 52 22
'MAN1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 1

Table S504.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MAN1A1 MUTATED 5 4 2
MAN1A1 WILD-TYPE 68 59 69
'MAN1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S505.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MAN1A1 MUTATED 5 4 5 1
MAN1A1 WILD-TYPE 86 59 80 50
'MAN1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S506.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MAN1A1 MUTATED 2 10 3
MAN1A1 WILD-TYPE 78 121 76
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 1

Table S507.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MAN1A1 MUTATED 7 4 2 1
MAN1A1 WILD-TYPE 70 76 74 46
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0417 (Fisher's exact test), Q value = 0.83

Table S508.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MAN1A1 MUTATED 1 5 7 1
MAN1A1 WILD-TYPE 98 66 67 35

Figure S41.  Get High-res Image Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.99

Table S509.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MAN1A1 MUTATED 6 2 6
MAN1A1 WILD-TYPE 60 95 100
'MAN1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S510.  Gene #51: 'MAN1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MAN1A1 MUTATED 3 0 3 4 0 1 2 1 0
MAN1A1 WILD-TYPE 22 21 41 43 32 10 47 27 12
'OXA1L MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S511.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
OXA1L MUTATED 4 2 2
OXA1L WILD-TYPE 120 80 82
'OXA1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S512.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
OXA1L MUTATED 4 2 1 1
OXA1L WILD-TYPE 78 96 29 79
'OXA1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S513.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
OXA1L MUTATED 1 1 1 2 1
OXA1L WILD-TYPE 30 60 38 52 21
'OXA1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S514.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
OXA1L MUTATED 2 2 2
OXA1L WILD-TYPE 71 61 69
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S515.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
OXA1L MUTATED 4 1 1 2
OXA1L WILD-TYPE 87 62 84 49
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S516.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
OXA1L MUTATED 2 5 1
OXA1L WILD-TYPE 78 126 78
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S517.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
OXA1L MUTATED 2 3 1 2
OXA1L WILD-TYPE 75 77 75 45
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 1

Table S518.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
OXA1L MUTATED 2 1 4 1
OXA1L WILD-TYPE 97 70 70 35
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.83

Table S519.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
OXA1L MUTATED 2 0 6
OXA1L WILD-TYPE 64 97 100

Figure S42.  Get High-res Image Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S520.  Gene #52: 'OXA1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
OXA1L MUTATED 0 0 2 3 0 0 1 1 1
OXA1L WILD-TYPE 25 21 42 44 32 11 48 27 11
'NAP1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S521.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
NAP1L2 MUTATED 10 6 9
NAP1L2 WILD-TYPE 114 76 75
'NAP1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S522.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
NAP1L2 MUTATED 8 9 1 7
NAP1L2 WILD-TYPE 74 89 29 73
'NAP1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S523.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
NAP1L2 MUTATED 3 6 3 5 1
NAP1L2 WILD-TYPE 28 55 36 49 21
'NAP1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S524.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
NAP1L2 MUTATED 5 8 5
NAP1L2 WILD-TYPE 68 55 66
'NAP1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.99

Table S525.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
NAP1L2 MUTATED 11 6 7 1
NAP1L2 WILD-TYPE 80 57 78 50
'NAP1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 1

Table S526.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
NAP1L2 MUTATED 9 11 5
NAP1L2 WILD-TYPE 71 120 74
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S527.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
NAP1L2 MUTATED 7 8 4 4
NAP1L2 WILD-TYPE 70 72 72 43
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S528.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NAP1L2 MUTATED 9 7 5 2
NAP1L2 WILD-TYPE 90 64 69 34
'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.77

Table S529.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
NAP1L2 MUTATED 11 5 6
NAP1L2 WILD-TYPE 55 92 100

Figure S43.  Get High-res Image Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NAP1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S530.  Gene #53: 'NAP1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
NAP1L2 MUTATED 4 1 6 3 1 1 4 1 1
NAP1L2 WILD-TYPE 21 20 38 44 31 10 45 27 11
'MPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.96

Table S531.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MPP7 MUTATED 16 4 12
MPP7 WILD-TYPE 108 78 72
'MPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.83

Table S532.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MPP7 MUTATED 16 7 3 6
MPP7 WILD-TYPE 66 91 27 74

Figure S44.  Get High-res Image Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S533.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MPP7 MUTATED 2 7 3 10 1
MPP7 WILD-TYPE 29 54 36 44 21
'MPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S534.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MPP7 MUTATED 11 5 7
MPP7 WILD-TYPE 62 58 64
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0712 (Fisher's exact test), Q value = 0.9

Table S535.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MPP7 MUTATED 16 3 7 6
MPP7 WILD-TYPE 75 60 78 45
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.99

Table S536.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MPP7 MUTATED 12 15 5
MPP7 WILD-TYPE 68 116 74
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S537.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MPP7 MUTATED 7 11 8 5
MPP7 WILD-TYPE 70 69 68 42
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S538.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MPP7 MUTATED 10 10 7 4
MPP7 WILD-TYPE 89 61 67 32
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S539.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MPP7 MUTATED 5 11 13
MPP7 WILD-TYPE 61 86 93
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.99

Table S540.  Gene #54: 'MPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MPP7 MUTATED 4 5 3 5 2 0 3 4 3
MPP7 WILD-TYPE 21 16 41 42 30 11 46 24 9
'BTK MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S541.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
BTK MUTATED 7 4 4
BTK WILD-TYPE 117 78 80
'BTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S542.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
BTK MUTATED 3 6 0 6
BTK WILD-TYPE 79 92 30 74
'BTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S543.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
BTK MUTATED 3 4 3 2 1
BTK WILD-TYPE 28 57 36 52 21
'BTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S544.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
BTK MUTATED 4 5 4
BTK WILD-TYPE 69 58 67
'BTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.95

Table S545.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
BTK MUTATED 1 6 5 3
BTK WILD-TYPE 90 57 80 48
'BTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S546.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
BTK MUTATED 2 8 5
BTK WILD-TYPE 78 123 74
'BTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S547.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
BTK MUTATED 4 3 3 4
BTK WILD-TYPE 73 77 73 43
'BTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 1

Table S548.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
BTK MUTATED 6 5 1 2
BTK WILD-TYPE 93 66 73 34
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S549.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
BTK MUTATED 6 4 4
BTK WILD-TYPE 60 93 102
'BTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 0.85

Table S550.  Gene #55: 'BTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
BTK MUTATED 2 0 4 0 4 0 1 1 2
BTK WILD-TYPE 23 21 40 47 28 11 48 27 10
'SLC9A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.99

Table S551.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
SLC9A11 MUTATED 13 16 15
SLC9A11 WILD-TYPE 111 66 69
'SLC9A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S552.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
SLC9A11 MUTATED 12 14 3 15
SLC9A11 WILD-TYPE 70 84 27 65
'SLC9A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S553.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
SLC9A11 MUTATED 6 10 5 12 2
SLC9A11 WILD-TYPE 25 51 34 42 20
'SLC9A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S554.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
SLC9A11 MUTATED 11 9 15
SLC9A11 WILD-TYPE 62 54 56
'SLC9A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S555.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
SLC9A11 MUTATED 14 10 14 6
SLC9A11 WILD-TYPE 77 53 71 45
'SLC9A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 1

Table S556.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
SLC9A11 MUTATED 11 22 11
SLC9A11 WILD-TYPE 69 109 68
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.978 (Fisher's exact test), Q value = 1

Table S557.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
SLC9A11 MUTATED 11 12 12 8
SLC9A11 WILD-TYPE 66 68 64 39
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S558.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SLC9A11 MUTATED 14 13 9 7
SLC9A11 WILD-TYPE 85 58 65 29
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S559.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
SLC9A11 MUTATED 10 16 16
SLC9A11 WILD-TYPE 56 81 90
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S560.  Gene #56: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
SLC9A11 MUTATED 5 4 6 7 3 1 8 5 3
SLC9A11 WILD-TYPE 20 17 38 40 29 10 41 23 9
'EMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S561.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
EMG1 MUTATED 2 3 2
EMG1 WILD-TYPE 122 79 82
'EMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S562.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
EMG1 MUTATED 2 2 1 2
EMG1 WILD-TYPE 80 96 29 78
'EMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 1

Table S563.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
EMG1 MUTATED 1 2 0 1 0
EMG1 WILD-TYPE 30 59 39 53 22
'EMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S564.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
EMG1 MUTATED 2 1 1
EMG1 WILD-TYPE 71 62 70
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S565.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
EMG1 MUTATED 1 1 3 2
EMG1 WILD-TYPE 90 62 82 49
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.99

Table S566.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
EMG1 MUTATED 2 1 4
EMG1 WILD-TYPE 78 130 75
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.99

Table S567.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
EMG1 MUTATED 2 0 4 1
EMG1 WILD-TYPE 75 80 72 46
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S568.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
EMG1 MUTATED 2 2 2 1
EMG1 WILD-TYPE 97 69 72 35
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S569.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
EMG1 MUTATED 1 4 2
EMG1 WILD-TYPE 65 93 104
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S570.  Gene #57: 'EMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
EMG1 MUTATED 1 1 1 0 1 0 2 1 0
EMG1 WILD-TYPE 24 20 43 47 31 11 47 27 12
'SELP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S571.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
SELP MUTATED 16 10 7
SELP WILD-TYPE 108 72 77
'SELP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.77

Table S572.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
SELP MUTATED 15 6 1 11
SELP WILD-TYPE 67 92 29 69

Figure S45.  Get High-res Image Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SELP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 1

Table S573.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
SELP MUTATED 2 10 5 3 2
SELP WILD-TYPE 29 51 34 51 20
'SELP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S574.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
SELP MUTATED 7 10 5
SELP WILD-TYPE 66 53 66
'SELP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0143 (Fisher's exact test), Q value = 0.72

Table S575.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
SELP MUTATED 14 4 14 1
SELP WILD-TYPE 77 59 71 50

Figure S46.  Get High-res Image Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SELP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.99

Table S576.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
SELP MUTATED 11 10 12
SELP WILD-TYPE 69 121 67
'SELP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S577.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
SELP MUTATED 8 11 7 6
SELP WILD-TYPE 69 69 69 41
'SELP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S578.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SELP MUTATED 14 9 5 4
SELP WILD-TYPE 85 62 69 32
'SELP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S579.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
SELP MUTATED 7 10 13
SELP WILD-TYPE 59 87 93
'SELP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S580.  Gene #58: 'SELP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
SELP MUTATED 4 2 4 5 1 2 8 3 1
SELP WILD-TYPE 21 19 40 42 31 9 41 25 11
'PARM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S581.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
PARM1 MUTATED 5 8 6
PARM1 WILD-TYPE 119 74 78
'PARM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S582.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
PARM1 MUTATED 6 7 0 6
PARM1 WILD-TYPE 76 91 30 74
'PARM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.99

Table S583.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
PARM1 MUTATED 2 8 2 1 2
PARM1 WILD-TYPE 29 53 37 53 20
'PARM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S584.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
PARM1 MUTATED 7 5 3
PARM1 WILD-TYPE 66 58 68
'PARM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.68 (Fisher's exact test), Q value = 1

Table S585.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
PARM1 MUTATED 5 3 8 3
PARM1 WILD-TYPE 86 60 77 48
'PARM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.911 (Fisher's exact test), Q value = 1

Table S586.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
PARM1 MUTATED 5 8 6
PARM1 WILD-TYPE 75 123 73
'PARM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S587.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
PARM1 MUTATED 3 4 7 4
PARM1 WILD-TYPE 74 76 69 43
'PARM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S588.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PARM1 MUTATED 6 7 2 3
PARM1 WILD-TYPE 93 64 72 33
'PARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S589.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
PARM1 MUTATED 3 8 7
PARM1 WILD-TYPE 63 89 99
'PARM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S590.  Gene #59: 'PARM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
PARM1 MUTATED 4 1 1 3 3 0 2 3 1
PARM1 WILD-TYPE 21 20 43 44 29 11 47 25 11
'ACSBG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.99

Table S591.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ACSBG1 MUTATED 4 2 7
ACSBG1 WILD-TYPE 120 80 77
'ACSBG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S592.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ACSBG1 MUTATED 2 7 0 4
ACSBG1 WILD-TYPE 80 91 30 76
'ACSBG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 1

Table S593.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ACSBG1 MUTATED 2 3 1 2 1
ACSBG1 WILD-TYPE 29 58 38 52 21
'ACSBG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S594.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ACSBG1 MUTATED 5 3 1
ACSBG1 WILD-TYPE 68 60 70
'ACSBG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S595.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ACSBG1 MUTATED 3 4 5 1
ACSBG1 WILD-TYPE 88 59 80 50
'ACSBG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S596.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ACSBG1 MUTATED 1 8 4
ACSBG1 WILD-TYPE 79 123 75
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S597.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ACSBG1 MUTATED 5 4 2 2
ACSBG1 WILD-TYPE 72 76 74 45
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 1

Table S598.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ACSBG1 MUTATED 3 6 2 2
ACSBG1 WILD-TYPE 96 65 72 34
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S599.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ACSBG1 MUTATED 3 5 4
ACSBG1 WILD-TYPE 63 92 102
'ACSBG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S600.  Gene #60: 'ACSBG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ACSBG1 MUTATED 2 0 2 1 1 1 3 2 0
ACSBG1 WILD-TYPE 23 21 42 46 31 10 46 26 12
'CCK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.77

Table S601.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
CCK MUTATED 0 4 2
CCK WILD-TYPE 124 78 82

Figure S47.  Get High-res Image Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S602.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
CCK MUTATED 1 2 1 2
CCK WILD-TYPE 81 96 29 78
'CCK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S603.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
CCK MUTATED 0 3 0 1 0
CCK WILD-TYPE 31 58 39 53 22
'CCK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.99

Table S604.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
CCK MUTATED 1 3 0
CCK WILD-TYPE 72 60 71
'CCK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S605.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
CCK MUTATED 1 1 3 1
CCK WILD-TYPE 90 62 82 50
'CCK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S606.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
CCK MUTATED 1 2 3
CCK WILD-TYPE 79 129 76
'CCK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S607.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
CCK MUTATED 0 2 2 2
CCK WILD-TYPE 77 78 74 45
'CCK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S608.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CCK MUTATED 2 1 2 1
CCK WILD-TYPE 97 70 72 35
'CCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S609.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
CCK MUTATED 2 3 1
CCK WILD-TYPE 64 94 105
'CCK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.979 (Fisher's exact test), Q value = 1

Table S610.  Gene #61: 'CCK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
CCK MUTATED 0 1 1 1 1 0 1 1 0
CCK WILD-TYPE 25 20 43 46 31 11 48 27 12
'C1QTNF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S611.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
C1QTNF9 MUTATED 7 2 7
C1QTNF9 WILD-TYPE 117 80 77
'C1QTNF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S612.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
C1QTNF9 MUTATED 4 7 1 4
C1QTNF9 WILD-TYPE 78 91 29 76
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 1

Table S613.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
C1QTNF9 MUTATED 2 4 1 4 1
C1QTNF9 WILD-TYPE 29 57 38 50 21
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S614.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
C1QTNF9 MUTATED 6 4 2
C1QTNF9 WILD-TYPE 67 59 69
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S615.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
C1QTNF9 MUTATED 6 1 5 4
C1QTNF9 WILD-TYPE 85 62 80 47
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S616.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
C1QTNF9 MUTATED 3 9 4
C1QTNF9 WILD-TYPE 77 122 75
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.99

Table S617.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
C1QTNF9 MUTATED 6 1 6 2
C1QTNF9 WILD-TYPE 71 79 70 45
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.99

Table S618.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C1QTNF9 MUTATED 7 6 2 0
C1QTNF9 WILD-TYPE 92 65 72 36
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S619.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
C1QTNF9 MUTATED 4 5 6
C1QTNF9 WILD-TYPE 62 92 100
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.99

Table S620.  Gene #62: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
C1QTNF9 MUTATED 3 0 1 1 3 1 5 0 1
C1QTNF9 WILD-TYPE 22 21 43 46 29 10 44 28 11
'UBE2V2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S621.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
UBE2V2 MUTATED 1 0 2
UBE2V2 WILD-TYPE 123 82 82
'UBE2V2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S622.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
UBE2V2 MUTATED 0 1 1 1
UBE2V2 WILD-TYPE 82 97 29 79
'UBE2V2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S623.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
UBE2V2 MUTATED 0 1 2 0
UBE2V2 WILD-TYPE 91 62 83 51
'UBE2V2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S624.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
UBE2V2 MUTATED 0 1 2
UBE2V2 WILD-TYPE 80 130 77
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S625.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
UBE2V2 MUTATED 1 1 1 0
UBE2V2 WILD-TYPE 76 79 75 47
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S626.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
UBE2V2 MUTATED 1 1 1 0
UBE2V2 WILD-TYPE 98 70 73 36
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.99

Table S627.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
UBE2V2 MUTATED 2 1 0
UBE2V2 WILD-TYPE 64 96 106
'UBE2V2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S628.  Gene #63: 'UBE2V2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
UBE2V2 MUTATED 1 0 1 0 1 0 0 0 0
UBE2V2 WILD-TYPE 24 21 43 47 31 11 49 28 12
'BOLA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S629.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
BOLA1 MUTATED 1 1 1
BOLA1 WILD-TYPE 123 81 83
'BOLA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S630.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
BOLA1 MUTATED 0 2 0 1
BOLA1 WILD-TYPE 82 96 30 79
'BOLA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S631.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
BOLA1 MUTATED 2 0 0 1
BOLA1 WILD-TYPE 89 63 85 50
'BOLA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S632.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
BOLA1 MUTATED 1 2 0
BOLA1 WILD-TYPE 79 129 79
'BOLA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S633.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
BOLA1 MUTATED 1 1 1 0
BOLA1 WILD-TYPE 76 79 75 47
'BOLA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S634.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
BOLA1 MUTATED 1 0 2 0
BOLA1 WILD-TYPE 98 71 72 36
'BOLA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S635.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
BOLA1 MUTATED 2 0 1
BOLA1 WILD-TYPE 64 97 105
'BOLA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S636.  Gene #64: 'BOLA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
BOLA1 MUTATED 1 0 1 0 0 0 1 0 0
BOLA1 WILD-TYPE 24 21 43 47 32 11 48 28 12
'IFNGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 1

Table S637.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
IFNGR2 MUTATED 1 0 3
IFNGR2 WILD-TYPE 123 82 81
'IFNGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S638.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
IFNGR2 MUTATED 1 2 1 0
IFNGR2 WILD-TYPE 81 96 29 80
'IFNGR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S639.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
IFNGR2 MUTATED 0 2 0 1 0
IFNGR2 WILD-TYPE 31 59 39 53 22
'IFNGR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.99

Table S640.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
IFNGR2 MUTATED 0 2 1
IFNGR2 WILD-TYPE 73 61 70
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S641.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
IFNGR2 MUTATED 2 0 2 0
IFNGR2 WILD-TYPE 89 63 83 51
'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S642.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
IFNGR2 MUTATED 2 1 1
IFNGR2 WILD-TYPE 78 130 78
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 1

Table S643.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
IFNGR2 MUTATED 0 2 2 0
IFNGR2 WILD-TYPE 77 78 74 47
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.898 (Fisher's exact test), Q value = 1

Table S644.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
IFNGR2 MUTATED 1 1 2 0
IFNGR2 WILD-TYPE 98 70 72 36
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S645.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
IFNGR2 MUTATED 0 2 2
IFNGR2 WILD-TYPE 66 95 104
'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S646.  Gene #65: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
IFNGR2 MUTATED 1 0 0 2 0 0 1 0 0
IFNGR2 WILD-TYPE 24 21 44 45 32 11 48 28 12
'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S647.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
KRAS MUTATED 4 1 1
KRAS WILD-TYPE 120 81 83
'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.85

Table S648.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
KRAS MUTATED 3 1 2 0
KRAS WILD-TYPE 79 97 28 80
'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S649.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
KRAS MUTATED 1 1 2 2 0
KRAS WILD-TYPE 30 60 37 52 22
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.99

Table S650.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
KRAS MUTATED 0 3 3
KRAS WILD-TYPE 73 60 68
'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.99

Table S651.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
KRAS MUTATED 4 1 0 1
KRAS WILD-TYPE 87 62 85 50
'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0755 (Fisher's exact test), Q value = 0.9

Table S652.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
KRAS MUTATED 4 2 0
KRAS WILD-TYPE 76 129 79
'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S653.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
KRAS MUTATED 3 2 0 1
KRAS WILD-TYPE 74 78 76 46
'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.99

Table S654.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
KRAS MUTATED 2 0 4 0
KRAS WILD-TYPE 97 71 70 36
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S655.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
KRAS MUTATED 2 0 3
KRAS WILD-TYPE 64 97 103
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.99

Table S656.  Gene #66: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
KRAS MUTATED 0 0 3 1 0 0 0 0 1
KRAS WILD-TYPE 25 21 41 46 32 11 49 28 11
'ZNF595 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S657.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ZNF595 MUTATED 4 2 2
ZNF595 WILD-TYPE 120 80 82
'ZNF595 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.99

Table S658.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ZNF595 MUTATED 4 0 1 3
ZNF595 WILD-TYPE 78 98 29 77
'ZNF595 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S659.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ZNF595 MUTATED 0 3 0 4 0
ZNF595 WILD-TYPE 31 58 39 50 22
'ZNF595 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S660.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ZNF595 MUTATED 2 2 3
ZNF595 WILD-TYPE 71 61 68
'ZNF595 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.83

Table S661.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ZNF595 MUTATED 1 0 3 4
ZNF595 WILD-TYPE 90 63 82 47

Figure S48.  Get High-res Image Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF595 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S662.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ZNF595 MUTATED 1 3 4
ZNF595 WILD-TYPE 79 128 75
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 1

Table S663.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ZNF595 MUTATED 3 2 1 2
ZNF595 WILD-TYPE 74 78 75 45
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S664.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZNF595 MUTATED 4 3 1 0
ZNF595 WILD-TYPE 95 68 73 36
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.96

Table S665.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ZNF595 MUTATED 0 2 6
ZNF595 WILD-TYPE 66 95 100
'ZNF595 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00309 (Fisher's exact test), Q value = 0.52

Table S666.  Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ZNF595 MUTATED 1 0 0 2 1 1 0 0 3
ZNF595 WILD-TYPE 24 21 44 45 31 10 49 28 9

Figure S49.  Get High-res Image Gene #67: 'ZNF595 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRKAA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.77

Table S667.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
PRKAA2 MUTATED 6 6 13
PRKAA2 WILD-TYPE 118 76 71

Figure S50.  Get High-res Image Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRKAA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.85

Table S668.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
PRKAA2 MUTATED 6 14 0 5
PRKAA2 WILD-TYPE 76 84 30 75
'PRKAA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S669.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
PRKAA2 MUTATED 4 6 3 4 3
PRKAA2 WILD-TYPE 27 55 36 50 19
'PRKAA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S670.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
PRKAA2 MUTATED 8 8 4
PRKAA2 WILD-TYPE 65 55 67
'PRKAA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S671.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
PRKAA2 MUTATED 7 7 5 6
PRKAA2 WILD-TYPE 84 56 80 45
'PRKAA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00387 (Fisher's exact test), Q value = 0.52

Table S672.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
PRKAA2 MUTATED 2 19 4
PRKAA2 WILD-TYPE 78 112 75

Figure S51.  Get High-res Image Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S673.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
PRKAA2 MUTATED 6 8 6 5
PRKAA2 WILD-TYPE 71 72 70 42
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S674.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PRKAA2 MUTATED 7 7 7 4
PRKAA2 WILD-TYPE 92 64 67 32
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S675.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
PRKAA2 MUTATED 9 6 9
PRKAA2 WILD-TYPE 57 91 97
'PRKAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S676.  Gene #68: 'PRKAA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
PRKAA2 MUTATED 3 2 8 1 2 0 3 4 1
PRKAA2 WILD-TYPE 22 19 36 46 30 11 46 24 11
'MMP27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S677.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MMP27 MUTATED 5 3 5
MMP27 WILD-TYPE 119 79 79
'MMP27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.99

Table S678.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MMP27 MUTATED 7 4 1 1
MMP27 WILD-TYPE 75 94 29 79
'MMP27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S679.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MMP27 MUTATED 2 3 3 2 0
MMP27 WILD-TYPE 29 58 36 52 22
'MMP27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S680.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MMP27 MUTATED 4 3 3
MMP27 WILD-TYPE 69 60 68
'MMP27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S681.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MMP27 MUTATED 5 3 4 1
MMP27 WILD-TYPE 86 60 81 50
'MMP27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S682.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MMP27 MUTATED 4 5 4
MMP27 WILD-TYPE 76 126 75
'MMP27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 1

Table S683.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MMP27 MUTATED 2 4 4 2
MMP27 WILD-TYPE 75 76 72 45
'MMP27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S684.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MMP27 MUTATED 3 5 2 2
MMP27 WILD-TYPE 96 66 72 34
'MMP27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S685.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MMP27 MUTATED 2 5 4
MMP27 WILD-TYPE 64 92 102
'MMP27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S686.  Gene #69: 'MMP27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MMP27 MUTATED 1 1 1 2 2 1 1 1 1
MMP27 WILD-TYPE 24 20 43 45 30 10 48 27 11
'POLR2B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S687.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
POLR2B MUTATED 4 3 3
POLR2B WILD-TYPE 120 79 81
'POLR2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S688.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
POLR2B MUTATED 5 1 1 3
POLR2B WILD-TYPE 77 97 29 77
'POLR2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.83

Table S689.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
POLR2B MUTATED 0 1 3 1 3
POLR2B WILD-TYPE 31 60 36 53 19

Figure S52.  Get High-res Image Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'POLR2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.72

Table S690.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
POLR2B MUTATED 0 2 6
POLR2B WILD-TYPE 73 61 65

Figure S53.  Get High-res Image Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'POLR2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S691.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
POLR2B MUTATED 5 0 3 2
POLR2B WILD-TYPE 86 63 82 49
'POLR2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S692.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
POLR2B MUTATED 4 4 2
POLR2B WILD-TYPE 76 127 77
'POLR2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S693.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
POLR2B MUTATED 2 5 2 0
POLR2B WILD-TYPE 75 75 74 47
'POLR2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S694.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
POLR2B MUTATED 4 4 1 0
POLR2B WILD-TYPE 95 67 73 36
'POLR2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 1

Table S695.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
POLR2B MUTATED 2 2 5
POLR2B WILD-TYPE 64 95 101
'POLR2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S696.  Gene #70: 'POLR2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
POLR2B MUTATED 1 1 0 3 1 1 1 0 1
POLR2B WILD-TYPE 24 20 44 44 31 10 48 28 11
'CSN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00609 (Fisher's exact test), Q value = 0.55

Table S697.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
CSN3 MUTATED 0 4 0
CSN3 WILD-TYPE 124 78 84

Figure S54.  Get High-res Image Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CSN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S698.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
CSN3 MUTATED 1 1 0 2
CSN3 WILD-TYPE 81 97 30 78
'CSN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.99

Table S699.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
CSN3 MUTATED 1 0 0 3 0
CSN3 WILD-TYPE 30 61 39 51 22
'CSN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.99

Table S700.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
CSN3 MUTATED 3 1 0
CSN3 WILD-TYPE 70 62 71
'CSN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S701.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
CSN3 MUTATED 1 0 2 1
CSN3 WILD-TYPE 90 63 83 50
'CSN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S702.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
CSN3 MUTATED 0 2 2
CSN3 WILD-TYPE 80 129 77
'CSN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S703.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
CSN3 MUTATED 1 1 1 1
CSN3 WILD-TYPE 76 79 75 46
'CSN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S704.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CSN3 MUTATED 1 1 1 1
CSN3 WILD-TYPE 98 70 73 35
'CSN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S705.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
CSN3 MUTATED 1 1 2
CSN3 WILD-TYPE 65 96 104
'CSN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S706.  Gene #71: 'CSN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
CSN3 MUTATED 0 0 2 1 0 0 0 1 0
CSN3 WILD-TYPE 25 21 42 46 32 11 49 27 12
'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S707.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
CASP8 MUTATED 5 3 1
CASP8 WILD-TYPE 119 79 83
'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S708.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
CASP8 MUTATED 3 2 0 4
CASP8 WILD-TYPE 79 96 30 76
'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S709.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
CASP8 MUTATED 0 1 3 3 1
CASP8 WILD-TYPE 31 60 36 51 21
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 1

Table S710.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
CASP8 MUTATED 4 2 2
CASP8 WILD-TYPE 69 61 69
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.99

Table S711.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
CASP8 MUTATED 3 0 5 1
CASP8 WILD-TYPE 88 63 80 50
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S712.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
CASP8 MUTATED 3 3 3
CASP8 WILD-TYPE 77 128 76
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S713.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
CASP8 MUTATED 3 3 1 2
CASP8 WILD-TYPE 74 77 75 45
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S714.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CASP8 MUTATED 5 2 1 1
CASP8 WILD-TYPE 94 69 73 35
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S715.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
CASP8 MUTATED 3 1 5
CASP8 WILD-TYPE 63 96 101
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S716.  Gene #72: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
CASP8 MUTATED 1 1 1 2 0 1 1 1 1
CASP8 WILD-TYPE 24 20 43 45 32 10 48 27 11
'PPFIA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S717.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
PPFIA1 MUTATED 8 4 4
PPFIA1 WILD-TYPE 116 78 80
'PPFIA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S718.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
PPFIA1 MUTATED 7 5 1 3
PPFIA1 WILD-TYPE 75 93 29 77
'PPFIA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S719.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
PPFIA1 MUTATED 0 3 3 4 1
PPFIA1 WILD-TYPE 31 58 36 50 21
'PPFIA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S720.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
PPFIA1 MUTATED 3 4 4
PPFIA1 WILD-TYPE 70 59 67
'PPFIA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S721.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
PPFIA1 MUTATED 5 4 4 3
PPFIA1 WILD-TYPE 86 59 81 48
'PPFIA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S722.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
PPFIA1 MUTATED 4 8 4
PPFIA1 WILD-TYPE 76 123 75
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S723.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
PPFIA1 MUTATED 5 6 2 3
PPFIA1 WILD-TYPE 72 74 74 44
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S724.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PPFIA1 MUTATED 6 4 5 1
PPFIA1 WILD-TYPE 93 67 69 35
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S725.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
PPFIA1 MUTATED 3 4 9
PPFIA1 WILD-TYPE 63 93 97
'PPFIA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S726.  Gene #73: 'PPFIA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
PPFIA1 MUTATED 2 0 4 4 0 1 2 1 2
PPFIA1 WILD-TYPE 23 21 40 43 32 10 47 27 10
'ZNF490 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S727.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ZNF490 MUTATED 7 5 4
ZNF490 WILD-TYPE 117 77 80
'ZNF490 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S728.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ZNF490 MUTATED 5 6 0 5
ZNF490 WILD-TYPE 77 92 30 75
'ZNF490 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.99

Table S729.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ZNF490 MUTATED 3 6 0 2 0
ZNF490 WILD-TYPE 28 55 39 52 22
'ZNF490 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 0.85

Table S730.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ZNF490 MUTATED 2 7 2
ZNF490 WILD-TYPE 71 56 69
'ZNF490 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S731.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ZNF490 MUTATED 7 1 6 2
ZNF490 WILD-TYPE 84 62 79 49
'ZNF490 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S732.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ZNF490 MUTATED 4 10 2
ZNF490 WILD-TYPE 76 121 77
'ZNF490 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S733.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ZNF490 MUTATED 2 5 5 3
ZNF490 WILD-TYPE 75 75 71 44
'ZNF490 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 1

Table S734.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZNF490 MUTATED 4 5 2 4
ZNF490 WILD-TYPE 95 66 72 32
'ZNF490 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S735.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ZNF490 MUTATED 3 5 5
ZNF490 WILD-TYPE 63 92 101
'ZNF490 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S736.  Gene #74: 'ZNF490 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ZNF490 MUTATED 1 3 1 3 1 0 2 2 0
ZNF490 WILD-TYPE 24 18 43 44 31 11 47 26 12
'IL5RA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S737.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
IL5RA MUTATED 6 4 6
IL5RA WILD-TYPE 118 78 78
'IL5RA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.99

Table S738.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
IL5RA MUTATED 7 4 3 2
IL5RA WILD-TYPE 75 94 27 78
'IL5RA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S739.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
IL5RA MUTATED 2 2 4 2 2
IL5RA WILD-TYPE 29 59 35 52 20
'IL5RA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S740.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
IL5RA MUTATED 4 3 5
IL5RA WILD-TYPE 69 60 66
'IL5RA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S741.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
IL5RA MUTATED 4 4 5 3
IL5RA WILD-TYPE 87 59 80 48
'IL5RA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 1

Table S742.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
IL5RA MUTATED 5 8 3
IL5RA WILD-TYPE 75 123 76
'IL5RA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S743.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
IL5RA MUTATED 7 3 4 1
IL5RA WILD-TYPE 70 77 72 46
'IL5RA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S744.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
IL5RA MUTATED 3 5 6 1
IL5RA WILD-TYPE 96 66 68 35
'IL5RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.99

Table S745.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
IL5RA MUTATED 7 4 4
IL5RA WILD-TYPE 59 93 102
'IL5RA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S746.  Gene #75: 'IL5RA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
IL5RA MUTATED 3 1 4 2 1 0 3 0 1
IL5RA WILD-TYPE 22 20 40 45 31 11 46 28 11
'LILRB5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.99

Table S747.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
LILRB5 MUTATED 7 3 9
LILRB5 WILD-TYPE 117 79 75
'LILRB5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S748.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
LILRB5 MUTATED 6 6 1 6
LILRB5 WILD-TYPE 76 92 29 74
'LILRB5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.99

Table S749.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
LILRB5 MUTATED 5 3 3 2 0
LILRB5 WILD-TYPE 26 58 36 52 22
'LILRB5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.99

Table S750.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
LILRB5 MUTATED 8 2 3
LILRB5 WILD-TYPE 65 61 68
'LILRB5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S751.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
LILRB5 MUTATED 4 5 7 3
LILRB5 WILD-TYPE 87 58 78 48
'LILRB5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S752.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
LILRB5 MUTATED 4 10 5
LILRB5 WILD-TYPE 76 121 74
'LILRB5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S753.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
LILRB5 MUTATED 4 7 4 3
LILRB5 WILD-TYPE 73 73 72 44
'LILRB5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.985 (Fisher's exact test), Q value = 1

Table S754.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
LILRB5 MUTATED 7 4 5 2
LILRB5 WILD-TYPE 92 67 69 34
'LILRB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S755.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
LILRB5 MUTATED 6 4 8
LILRB5 WILD-TYPE 60 93 98
'LILRB5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S756.  Gene #76: 'LILRB5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
LILRB5 MUTATED 2 0 4 5 1 0 2 2 2
LILRB5 WILD-TYPE 23 21 40 42 31 11 47 26 10
'C10ORF72 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.61

Table S757.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
C10ORF72 MUTATED 5 3 12
C10ORF72 WILD-TYPE 119 79 72

Figure S55.  Get High-res Image Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C10ORF72 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.8

Table S758.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
C10ORF72 MUTATED 9 9 1 1
C10ORF72 WILD-TYPE 73 89 29 79

Figure S56.  Get High-res Image Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C10ORF72 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 1

Table S759.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
C10ORF72 MUTATED 3 4 2 3 1
C10ORF72 WILD-TYPE 28 57 37 51 21
'C10ORF72 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S760.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
C10ORF72 MUTATED 7 3 3
C10ORF72 WILD-TYPE 66 60 68
'C10ORF72 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.85

Table S761.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
C10ORF72 MUTATED 9 3 8 0
C10ORF72 WILD-TYPE 82 60 77 51
'C10ORF72 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 1

Table S762.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
C10ORF72 MUTATED 7 8 5
C10ORF72 WILD-TYPE 73 123 74
'C10ORF72 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S763.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
C10ORF72 MUTATED 5 7 6 1
C10ORF72 WILD-TYPE 72 73 70 46
'C10ORF72 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.99

Table S764.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C10ORF72 MUTATED 5 9 4 1
C10ORF72 WILD-TYPE 94 62 70 35
'C10ORF72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S765.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
C10ORF72 MUTATED 5 5 9
C10ORF72 WILD-TYPE 61 92 97
'C10ORF72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S766.  Gene #77: 'C10ORF72 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
C10ORF72 MUTATED 5 1 2 5 2 0 3 1 0
C10ORF72 WILD-TYPE 20 20 42 42 30 11 46 27 12
'C3ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S767.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
C3ORF71 MUTATED 1 1 2
C3ORF71 WILD-TYPE 123 81 82
'C3ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S768.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
C3ORF71 MUTATED 0 2 1 1
C3ORF71 WILD-TYPE 82 96 29 79
'C3ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S769.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
C3ORF71 MUTATED 0 2 1 1 0
C3ORF71 WILD-TYPE 31 59 38 53 22
'C3ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S770.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
C3ORF71 MUTATED 2 1 1
C3ORF71 WILD-TYPE 71 62 70
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.99

Table S771.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
C3ORF71 MUTATED 0 1 3 0
C3ORF71 WILD-TYPE 91 62 82 51
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.99

Table S772.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
C3ORF71 MUTATED 0 1 3
C3ORF71 WILD-TYPE 80 130 76
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S773.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
C3ORF71 MUTATED 1 1 2 0
C3ORF71 WILD-TYPE 76 79 74 47
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.98

Table S774.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C3ORF71 MUTATED 0 3 1 0
C3ORF71 WILD-TYPE 99 68 73 36
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S775.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
C3ORF71 MUTATED 1 2 1
C3ORF71 WILD-TYPE 65 95 105
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0984 (Fisher's exact test), Q value = 0.96

Table S776.  Gene #78: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
C3ORF71 MUTATED 0 0 1 0 2 1 0 0 0
C3ORF71 WILD-TYPE 25 21 43 47 30 10 49 28 12
'ZNF589 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S777.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ZNF589 MUTATED 2 0 1
ZNF589 WILD-TYPE 122 82 83
'ZNF589 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S778.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ZNF589 MUTATED 2 1 0 0
ZNF589 WILD-TYPE 80 97 30 80
'ZNF589 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S779.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ZNF589 MUTATED 1 0 1 1
ZNF589 WILD-TYPE 90 63 84 50
'ZNF589 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 1

Table S780.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ZNF589 MUTATED 0 3 0
ZNF589 WILD-TYPE 80 128 79
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S781.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ZNF589 MUTATED 1 2 0 0
ZNF589 WILD-TYPE 76 78 76 47
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S782.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZNF589 MUTATED 1 0 2 0
ZNF589 WILD-TYPE 98 71 72 36
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S783.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ZNF589 MUTATED 1 0 2
ZNF589 WILD-TYPE 65 97 104
'ZNF589 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S784.  Gene #79: 'ZNF589 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ZNF589 MUTATED 0 0 2 1 0 0 0 0 0
ZNF589 WILD-TYPE 25 21 42 46 32 11 49 28 12
'DSP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S785.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
DSP MUTATED 27 13 20
DSP WILD-TYPE 97 69 64
'DSP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S786.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
DSP MUTATED 18 17 7 18
DSP WILD-TYPE 64 81 23 62
'DSP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S787.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
DSP MUTATED 6 15 11 12 4
DSP WILD-TYPE 25 46 28 42 18
'DSP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 1

Table S788.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
DSP MUTATED 13 17 18
DSP WILD-TYPE 60 46 53
'DSP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S789.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
DSP MUTATED 20 13 18 9
DSP WILD-TYPE 71 50 67 42
'DSP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S790.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
DSP MUTATED 17 28 15
DSP WILD-TYPE 63 103 64
'DSP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S791.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
DSP MUTATED 16 18 13 11
DSP WILD-TYPE 61 62 63 36
'DSP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S792.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
DSP MUTATED 22 16 14 6
DSP WILD-TYPE 77 55 60 30
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S793.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
DSP MUTATED 15 17 26
DSP WILD-TYPE 51 80 80
'DSP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.99

Table S794.  Gene #80: 'DSP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
DSP MUTATED 7 4 12 10 5 0 9 5 6
DSP WILD-TYPE 18 17 32 37 27 11 40 23 6
'ZZZ3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S795.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ZZZ3 MUTATED 2 1 0
ZZZ3 WILD-TYPE 122 81 84
'ZZZ3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S796.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ZZZ3 MUTATED 2 1 0 0
ZZZ3 WILD-TYPE 80 97 30 80
'ZZZ3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S797.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ZZZ3 MUTATED 0 2 0 1 0
ZZZ3 WILD-TYPE 31 59 39 53 22
'ZZZ3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S798.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ZZZ3 MUTATED 1 2 0
ZZZ3 WILD-TYPE 72 61 71
'ZZZ3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S799.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ZZZ3 MUTATED 2 0 1 0
ZZZ3 WILD-TYPE 89 63 84 51
'ZZZ3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 0.99

Table S800.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ZZZ3 MUTATED 2 0 1
ZZZ3 WILD-TYPE 78 131 78
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S801.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ZZZ3 MUTATED 0 1 1 1
ZZZ3 WILD-TYPE 77 79 75 46
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S802.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ZZZ3 MUTATED 1 1 0 1
ZZZ3 WILD-TYPE 98 70 74 35
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S803.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ZZZ3 MUTATED 0 2 1
ZZZ3 WILD-TYPE 66 95 105
'ZZZ3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 1

Table S804.  Gene #81: 'ZZZ3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ZZZ3 MUTATED 0 0 0 1 1 0 0 1 0
ZZZ3 WILD-TYPE 25 21 44 46 31 11 49 27 12
'MCART2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S805.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MCART2 MUTATED 2 4 4
MCART2 WILD-TYPE 122 78 80
'MCART2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S806.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MCART2 MUTATED 4 4 0 2
MCART2 WILD-TYPE 78 94 30 78
'MCART2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S807.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MCART2 MUTATED 1 1 1 2 2
MCART2 WILD-TYPE 30 60 38 52 20
'MCART2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S808.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MCART2 MUTATED 2 3 2
MCART2 WILD-TYPE 71 60 69
'MCART2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S809.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MCART2 MUTATED 1 3 4 2
MCART2 WILD-TYPE 90 60 81 49
'MCART2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S810.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MCART2 MUTATED 2 5 3
MCART2 WILD-TYPE 78 126 76
'MCART2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 1

Table S811.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MCART2 MUTATED 2 2 4 1
MCART2 WILD-TYPE 75 78 72 46
'MCART2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S812.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MCART2 MUTATED 5 2 1 1
MCART2 WILD-TYPE 94 69 73 35
'MCART2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S813.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MCART2 MUTATED 3 3 3
MCART2 WILD-TYPE 63 94 103
'MCART2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S814.  Gene #82: 'MCART2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MCART2 MUTATED 0 1 2 1 2 0 2 1 0
MCART2 WILD-TYPE 25 20 42 46 30 11 47 27 12
'CD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 1

Table S815.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
CD2 MUTATED 9 6 7
CD2 WILD-TYPE 115 76 77
'CD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S816.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
CD2 MUTATED 6 6 2 8
CD2 WILD-TYPE 76 92 28 72
'CD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S817.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
CD2 MUTATED 2 4 3 6 0
CD2 WILD-TYPE 29 57 36 48 22
'CD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S818.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
CD2 MUTATED 7 5 3
CD2 WILD-TYPE 66 58 68
'CD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S819.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
CD2 MUTATED 6 4 7 5
CD2 WILD-TYPE 85 59 78 46
'CD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S820.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
CD2 MUTATED 4 12 6
CD2 WILD-TYPE 76 119 73
'CD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S821.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
CD2 MUTATED 5 8 4 4
CD2 WILD-TYPE 72 72 72 43
'CD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.988 (Fisher's exact test), Q value = 1

Table S822.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CD2 MUTATED 7 5 6 3
CD2 WILD-TYPE 92 66 68 33
'CD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S823.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
CD2 MUTATED 4 7 10
CD2 WILD-TYPE 62 90 96
'CD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S824.  Gene #83: 'CD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
CD2 MUTATED 1 1 5 4 1 1 4 3 1
CD2 WILD-TYPE 24 20 39 43 31 10 45 25 11
'CD209 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S825.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
CD209 MUTATED 3 5 4
CD209 WILD-TYPE 121 77 80
'CD209 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.99

Table S826.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
CD209 MUTATED 6 5 0 1
CD209 WILD-TYPE 76 93 30 79
'CD209 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00838 (Fisher's exact test), Q value = 0.61

Table S827.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
CD209 MUTATED 0 3 2 0 4
CD209 WILD-TYPE 31 58 37 54 18

Figure S57.  Get High-res Image Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CD209 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S828.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
CD209 MUTATED 2 3 4
CD209 WILD-TYPE 71 60 67
'CD209 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.83

Table S829.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
CD209 MUTATED 8 0 3 1
CD209 WILD-TYPE 83 63 82 50

Figure S58.  Get High-res Image Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CD209 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S830.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
CD209 MUTATED 5 5 2
CD209 WILD-TYPE 75 126 77
'CD209 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S831.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
CD209 MUTATED 2 4 5 1
CD209 WILD-TYPE 75 76 71 46
'CD209 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S832.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CD209 MUTATED 6 3 3 0
CD209 WILD-TYPE 93 68 71 36
'CD209 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 1

Table S833.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
CD209 MUTATED 4 3 5
CD209 WILD-TYPE 62 94 101
'CD209 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S834.  Gene #84: 'CD209 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
CD209 MUTATED 2 1 2 1 1 0 4 0 1
CD209 WILD-TYPE 23 20 42 46 31 11 45 28 11
'C2ORF16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S835.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
C2ORF16 MUTATED 12 5 12
C2ORF16 WILD-TYPE 112 77 72
'C2ORF16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S836.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
C2ORF16 MUTATED 11 9 2 7
C2ORF16 WILD-TYPE 71 89 28 73
'C2ORF16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S837.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
C2ORF16 MUTATED 6 4 3 9 2
C2ORF16 WILD-TYPE 25 57 36 45 20
'C2ORF16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S838.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
C2ORF16 MUTATED 9 4 11
C2ORF16 WILD-TYPE 64 59 60
'C2ORF16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S839.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
C2ORF16 MUTATED 9 9 6 5
C2ORF16 WILD-TYPE 82 54 79 46
'C2ORF16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0335 (Fisher's exact test), Q value = 0.8

Table S840.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
C2ORF16 MUTATED 3 19 7
C2ORF16 WILD-TYPE 77 112 72

Figure S59.  Get High-res Image Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S841.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
C2ORF16 MUTATED 9 8 5 6
C2ORF16 WILD-TYPE 68 72 71 41
'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S842.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C2ORF16 MUTATED 10 5 10 3
C2ORF16 WILD-TYPE 89 66 64 33
'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.77

Table S843.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
C2ORF16 MUTATED 8 4 16
C2ORF16 WILD-TYPE 58 93 90

Figure S60.  Get High-res Image Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C2ORF16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S844.  Gene #85: 'C2ORF16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
C2ORF16 MUTATED 2 1 7 6 3 0 5 2 2
C2ORF16 WILD-TYPE 23 20 37 41 29 11 44 26 10
'GLRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.99

Table S845.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
GLRB MUTATED 17 4 9
GLRB WILD-TYPE 107 78 75
'GLRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S846.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
GLRB MUTATED 11 6 3 10
GLRB WILD-TYPE 71 92 27 70
'GLRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.874 (Fisher's exact test), Q value = 1

Table S847.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
GLRB MUTATED 4 7 3 6 1
GLRB WILD-TYPE 27 54 36 48 21
'GLRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S848.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
GLRB MUTATED 6 8 7
GLRB WILD-TYPE 67 55 64
'GLRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 1

Table S849.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
GLRB MUTATED 11 4 8 7
GLRB WILD-TYPE 80 59 77 44
'GLRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S850.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
GLRB MUTATED 11 13 6
GLRB WILD-TYPE 69 118 73
'GLRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S851.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
GLRB MUTATED 9 9 8 3
GLRB WILD-TYPE 68 71 68 44
'GLRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.99

Table S852.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
GLRB MUTATED 16 7 4 2
GLRB WILD-TYPE 83 64 70 34
'GLRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S853.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
GLRB MUTATED 7 8 14
GLRB WILD-TYPE 59 89 92
'GLRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 1

Table S854.  Gene #86: 'GLRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
GLRB MUTATED 2 1 4 10 3 0 5 2 2
GLRB WILD-TYPE 23 20 40 37 29 11 44 26 10
'PKDREJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S855.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
PKDREJ MUTATED 13 5 12
PKDREJ WILD-TYPE 111 77 72
'PKDREJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S856.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
PKDREJ MUTATED 8 12 5 5
PKDREJ WILD-TYPE 74 86 25 75
'PKDREJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.98 (Fisher's exact test), Q value = 1

Table S857.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
PKDREJ MUTATED 4 6 4 7 2
PKDREJ WILD-TYPE 27 55 35 47 20
'PKDREJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S858.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
PKDREJ MUTATED 9 7 7
PKDREJ WILD-TYPE 64 56 64
'PKDREJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S859.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
PKDREJ MUTATED 6 6 12 6
PKDREJ WILD-TYPE 85 57 73 45
'PKDREJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S860.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
PKDREJ MUTATED 7 14 9
PKDREJ WILD-TYPE 73 117 70
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S861.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
PKDREJ MUTATED 11 7 5 6
PKDREJ WILD-TYPE 66 73 71 41
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S862.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PKDREJ MUTATED 12 7 8 2
PKDREJ WILD-TYPE 87 64 66 34
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 1

Table S863.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
PKDREJ MUTATED 7 6 13
PKDREJ WILD-TYPE 59 91 93
'PKDREJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.99

Table S864.  Gene #87: 'PKDREJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
PKDREJ MUTATED 2 0 4 7 1 3 4 2 3
PKDREJ WILD-TYPE 23 21 40 40 31 8 45 26 9
'PTPRT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S865.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
PTPRT MUTATED 32 26 28
PTPRT WILD-TYPE 92 56 56
'PTPRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 1

Table S866.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
PTPRT MUTATED 29 25 8 24
PTPRT WILD-TYPE 53 73 22 56
'PTPRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S867.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
PTPRT MUTATED 8 20 16 19 5
PTPRT WILD-TYPE 23 41 23 35 17
'PTPRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S868.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
PTPRT MUTATED 23 20 25
PTPRT WILD-TYPE 50 43 46
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S869.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
PTPRT MUTATED 28 16 26 16
PTPRT WILD-TYPE 63 47 59 35
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 1

Table S870.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
PTPRT MUTATED 21 37 28
PTPRT WILD-TYPE 59 94 51
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S871.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
PTPRT MUTATED 25 29 18 12
PTPRT WILD-TYPE 52 51 58 35
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 0.9

Table S872.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PTPRT MUTATED 39 19 19 7
PTPRT WILD-TYPE 60 52 55 29
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.85

Table S873.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
PTPRT MUTATED 21 22 40
PTPRT WILD-TYPE 45 75 66
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.99

Table S874.  Gene #88: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
PTPRT MUTATED 7 2 14 20 9 4 16 5 6
PTPRT WILD-TYPE 18 19 30 27 23 7 33 23 6
'FAM55C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S875.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
FAM55C MUTATED 2 1 3
FAM55C WILD-TYPE 122 81 81
'FAM55C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S876.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
FAM55C MUTATED 2 2 0 2
FAM55C WILD-TYPE 80 96 30 78
'FAM55C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S877.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
FAM55C MUTATED 0 2 0 1 0
FAM55C WILD-TYPE 31 59 39 53 22
'FAM55C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.99

Table S878.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
FAM55C MUTATED 0 2 1
FAM55C WILD-TYPE 73 61 70
'FAM55C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S879.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
FAM55C MUTATED 2 1 2 1
FAM55C WILD-TYPE 89 62 83 50
'FAM55C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S880.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
FAM55C MUTATED 2 4 0
FAM55C WILD-TYPE 78 127 79
'FAM55C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S881.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
FAM55C MUTATED 1 2 3 0
FAM55C WILD-TYPE 76 78 73 47
'FAM55C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 1

Table S882.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
FAM55C MUTATED 3 2 1 0
FAM55C WILD-TYPE 96 69 73 36
'FAM55C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S883.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
FAM55C MUTATED 2 2 2
FAM55C WILD-TYPE 64 95 104
'FAM55C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S884.  Gene #89: 'FAM55C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
FAM55C MUTATED 1 0 1 0 0 0 4 0 0
FAM55C WILD-TYPE 24 21 43 47 32 11 45 28 12
'NUDT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.99

Table S885.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
NUDT4 MUTATED 2 0 3
NUDT4 WILD-TYPE 122 82 81
'NUDT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S886.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
NUDT4 MUTATED 1 1 1 2
NUDT4 WILD-TYPE 81 97 29 78
'NUDT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S887.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
NUDT4 MUTATED 0 3 0 2 0
NUDT4 WILD-TYPE 31 58 39 52 22
'NUDT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S888.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
NUDT4 MUTATED 2 2 1
NUDT4 WILD-TYPE 71 61 70
'NUDT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S889.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
NUDT4 MUTATED 1 0 3 1
NUDT4 WILD-TYPE 90 63 82 50
'NUDT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.607 (Fisher's exact test), Q value = 1

Table S890.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
NUDT4 MUTATED 2 1 2
NUDT4 WILD-TYPE 78 130 77
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 1

Table S891.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
NUDT4 MUTATED 2 1 1 1
NUDT4 WILD-TYPE 75 79 75 46
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S892.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NUDT4 MUTATED 0 2 2 1
NUDT4 WILD-TYPE 99 69 72 35
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S893.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
NUDT4 MUTATED 1 1 3
NUDT4 WILD-TYPE 65 96 103
'NUDT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.99

Table S894.  Gene #90: 'NUDT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
NUDT4 MUTATED 2 1 0 1 0 0 0 1 0
NUDT4 WILD-TYPE 23 20 44 46 32 11 49 27 12
'MYPOP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S895.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MYPOP MUTATED 4 3 0
MYPOP WILD-TYPE 120 79 84
'MYPOP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S896.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MYPOP MUTATED 2 2 1 2
MYPOP WILD-TYPE 80 96 29 78
'MYPOP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S897.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MYPOP MUTATED 0 2 1 1 0
MYPOP WILD-TYPE 31 59 38 53 22
'MYPOP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S898.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MYPOP MUTATED 1 2 1
MYPOP WILD-TYPE 72 61 70
'MYPOP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S899.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MYPOP MUTATED 2 1 2 2
MYPOP WILD-TYPE 89 62 83 49
'MYPOP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S900.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MYPOP MUTATED 2 2 3
MYPOP WILD-TYPE 78 129 76
'MYPOP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S901.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MYPOP MUTATED 1 3 1 2
MYPOP WILD-TYPE 76 77 75 45
'MYPOP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.99

Table S902.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MYPOP MUTATED 4 0 1 2
MYPOP WILD-TYPE 95 71 73 34
'MYPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S903.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MYPOP MUTATED 0 3 4
MYPOP WILD-TYPE 66 94 102
'MYPOP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S904.  Gene #91: 'MYPOP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MYPOP MUTATED 0 1 1 1 2 0 1 0 1
MYPOP WILD-TYPE 25 20 43 46 30 11 48 28 11
'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S905.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MLL4 MUTATED 14 7 11
MLL4 WILD-TYPE 110 75 73
'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 0.83

Table S906.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MLL4 MUTATED 14 5 5 8
MLL4 WILD-TYPE 68 93 25 72

Figure S61.  Get High-res Image Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S907.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MLL4 MUTATED 1 9 6 4 1
MLL4 WILD-TYPE 30 52 33 50 21
'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S908.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MLL4 MUTATED 5 8 8
MLL4 WILD-TYPE 68 55 63
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.96

Table S909.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MLL4 MUTATED 16 4 6 6
MLL4 WILD-TYPE 75 59 79 45
'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S910.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MLL4 MUTATED 11 14 7
MLL4 WILD-TYPE 69 117 72
'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 1

Table S911.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MLL4 MUTATED 6 10 7 8
MLL4 WILD-TYPE 71 70 69 39
'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S912.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MLL4 MUTATED 9 8 8 6
MLL4 WILD-TYPE 90 63 66 30
'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.99

Table S913.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MLL4 MUTATED 6 8 17
MLL4 WILD-TYPE 60 89 89
'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 1

Table S914.  Gene #92: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MLL4 MUTATED 1 2 4 9 4 0 4 5 2
MLL4 WILD-TYPE 24 19 40 38 28 11 45 23 10
'MMP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S915.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MMP1 MUTATED 5 2 7
MMP1 WILD-TYPE 119 80 77
'MMP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S916.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MMP1 MUTATED 7 3 0 4
MMP1 WILD-TYPE 75 95 30 76
'MMP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S917.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MMP1 MUTATED 1 1 2 3 0
MMP1 WILD-TYPE 30 60 37 51 22
'MMP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S918.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MMP1 MUTATED 2 2 3
MMP1 WILD-TYPE 71 61 68
'MMP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S919.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MMP1 MUTATED 6 2 4 2
MMP1 WILD-TYPE 85 61 81 49
'MMP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S920.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MMP1 MUTATED 4 6 4
MMP1 WILD-TYPE 76 125 75
'MMP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.8 (Fisher's exact test), Q value = 1

Table S921.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MMP1 MUTATED 4 4 5 1
MMP1 WILD-TYPE 73 76 71 46
'MMP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0579 (Fisher's exact test), Q value = 0.85

Table S922.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MMP1 MUTATED 6 7 1 0
MMP1 WILD-TYPE 93 64 73 36
'MMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S923.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MMP1 MUTATED 3 6 4
MMP1 WILD-TYPE 63 91 102
'MMP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S924.  Gene #93: 'MMP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MMP1 MUTATED 2 1 1 3 1 1 3 0 1
MMP1 WILD-TYPE 23 20 43 44 31 10 46 28 11
'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.96

Table S925.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
THEMIS MUTATED 15 5 14
THEMIS WILD-TYPE 109 77 70
'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S926.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
THEMIS MUTATED 13 7 3 11
THEMIS WILD-TYPE 69 91 27 69
'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S927.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
THEMIS MUTATED 5 6 6 7 0
THEMIS WILD-TYPE 26 55 33 47 22
'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S928.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
THEMIS MUTATED 9 7 8
THEMIS WILD-TYPE 64 56 63
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S929.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
THEMIS MUTATED 11 9 7 7
THEMIS WILD-TYPE 80 54 78 44
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 1

Table S930.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
THEMIS MUTATED 10 16 8
THEMIS WILD-TYPE 70 115 71
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S931.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
THEMIS MUTATED 8 12 8 3
THEMIS WILD-TYPE 69 68 68 44
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S932.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
THEMIS MUTATED 12 11 7 1
THEMIS WILD-TYPE 87 60 67 35
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S933.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
THEMIS MUTATED 7 8 15
THEMIS WILD-TYPE 59 89 91
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 1

Table S934.  Gene #94: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
THEMIS MUTATED 3 2 6 8 3 1 5 1 1
THEMIS WILD-TYPE 22 19 38 39 29 10 44 27 11
'ACO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S935.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ACO1 MUTATED 5 1 2
ACO1 WILD-TYPE 119 81 82
'ACO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 1

Table S936.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ACO1 MUTATED 1 3 0 4
ACO1 WILD-TYPE 81 95 30 76
'ACO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S937.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ACO1 MUTATED 2 1 1 2 1
ACO1 WILD-TYPE 29 60 38 52 21
'ACO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S938.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ACO1 MUTATED 2 2 3
ACO1 WILD-TYPE 71 61 68
'ACO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S939.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ACO1 MUTATED 4 2 2 0
ACO1 WILD-TYPE 87 61 83 51
'ACO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S940.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ACO1 MUTATED 2 4 2
ACO1 WILD-TYPE 78 127 77
'ACO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.98

Table S941.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ACO1 MUTATED 0 5 2 1
ACO1 WILD-TYPE 77 75 74 46
'ACO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.97

Table S942.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ACO1 MUTATED 6 0 2 0
ACO1 WILD-TYPE 93 71 72 36
'ACO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S943.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ACO1 MUTATED 2 1 3
ACO1 WILD-TYPE 64 96 103
'ACO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 1

Table S944.  Gene #95: 'ACO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ACO1 MUTATED 0 0 2 1 1 0 2 0 0
ACO1 WILD-TYPE 25 21 42 46 31 11 47 28 12
'MUC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 1

Table S945.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MUC7 MUTATED 8 3 6
MUC7 WILD-TYPE 116 79 78
'MUC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.99

Table S946.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MUC7 MUTATED 8 4 3 2
MUC7 WILD-TYPE 74 94 27 78
'MUC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S947.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MUC7 MUTATED 3 1 3 3 2
MUC7 WILD-TYPE 28 60 36 51 20
'MUC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.931 (Fisher's exact test), Q value = 1

Table S948.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MUC7 MUTATED 5 3 4
MUC7 WILD-TYPE 68 60 67
'MUC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S949.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MUC7 MUTATED 6 4 5 2
MUC7 WILD-TYPE 85 59 80 49
'MUC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S950.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MUC7 MUTATED 7 8 2
MUC7 WILD-TYPE 73 123 77
'MUC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00353 (Fisher's exact test), Q value = 0.52

Table S951.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MUC7 MUTATED 7 7 0 0
MUC7 WILD-TYPE 70 73 76 47

Figure S62.  Get High-res Image Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MUC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S952.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MUC7 MUTATED 6 2 6 0
MUC7 WILD-TYPE 93 69 68 36
'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.99

Table S953.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MUC7 MUTATED 4 2 8
MUC7 WILD-TYPE 62 95 98
'MUC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.99

Table S954.  Gene #96: 'MUC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MUC7 MUTATED 1 2 5 3 0 1 1 0 1
MUC7 WILD-TYPE 24 19 39 44 32 10 48 28 11
'TP63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S955.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
TP63 MUTATED 21 14 15
TP63 WILD-TYPE 103 68 69
'TP63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 1

Table S956.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
TP63 MUTATED 19 12 6 13
TP63 WILD-TYPE 63 86 24 67
'TP63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.77

Table S957.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
TP63 MUTATED 8 13 9 5 0
TP63 WILD-TYPE 23 48 30 49 22

Figure S63.  Get High-res Image Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TP63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.99

Table S958.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
TP63 MUTATED 12 15 8
TP63 WILD-TYPE 61 48 63
'TP63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.99

Table S959.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
TP63 MUTATED 22 8 15 5
TP63 WILD-TYPE 69 55 70 46
'TP63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S960.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
TP63 MUTATED 14 23 13
TP63 WILD-TYPE 66 108 66
'TP63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.85

Table S961.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
TP63 MUTATED 10 19 7 10
TP63 WILD-TYPE 67 61 69 37
'TP63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 1

Table S962.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
TP63 MUTATED 17 14 11 4
TP63 WILD-TYPE 82 57 63 32
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S963.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
TP63 MUTATED 10 12 22
TP63 WILD-TYPE 56 85 84
'TP63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S964.  Gene #97: 'TP63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
TP63 MUTATED 3 1 10 8 4 1 8 4 5
TP63 WILD-TYPE 22 20 34 39 28 10 41 24 7
'APCS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S965.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
APCS MUTATED 7 1 5
APCS WILD-TYPE 117 81 79
'APCS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S966.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
APCS MUTATED 6 2 1 4
APCS WILD-TYPE 76 96 29 76
'APCS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S967.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
APCS MUTATED 1 4 0 4 1
APCS WILD-TYPE 30 57 39 50 21
'APCS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S968.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
APCS MUTATED 4 1 5
APCS WILD-TYPE 69 62 66
'APCS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.95

Table S969.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
APCS MUTATED 5 1 7 0
APCS WILD-TYPE 86 62 78 51
'APCS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.99

Table S970.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
APCS MUTATED 4 3 6
APCS WILD-TYPE 76 128 73
'APCS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S971.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
APCS MUTATED 5 3 3 2
APCS WILD-TYPE 72 77 73 45
'APCS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S972.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
APCS MUTATED 5 5 1 2
APCS WILD-TYPE 94 66 73 34
'APCS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S973.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
APCS MUTATED 5 5 3
APCS WILD-TYPE 61 92 103
'APCS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S974.  Gene #98: 'APCS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
APCS MUTATED 2 0 2 1 2 1 3 1 1
APCS WILD-TYPE 23 21 42 46 30 10 46 27 11
'GPX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S975.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
GPX5 MUTATED 8 6 4
GPX5 WILD-TYPE 116 76 80
'GPX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S976.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
GPX5 MUTATED 8 3 1 6
GPX5 WILD-TYPE 74 95 29 74
'GPX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S977.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
GPX5 MUTATED 1 3 4 1 2
GPX5 WILD-TYPE 30 58 35 53 20
'GPX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S978.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
GPX5 MUTATED 4 2 5
GPX5 WILD-TYPE 69 61 66
'GPX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S979.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
GPX5 MUTATED 7 4 5 2
GPX5 WILD-TYPE 84 59 80 49
'GPX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0879 (Fisher's exact test), Q value = 0.95

Table S980.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
GPX5 MUTATED 9 7 2
GPX5 WILD-TYPE 71 124 77
'GPX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.9

Table S981.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
GPX5 MUTATED 3 5 8 0
GPX5 WILD-TYPE 74 75 68 47
'GPX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S982.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
GPX5 MUTATED 7 4 5 0
GPX5 WILD-TYPE 92 67 69 36
'GPX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S983.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
GPX5 MUTATED 5 6 5
GPX5 WILD-TYPE 61 91 101
'GPX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 1

Table S984.  Gene #99: 'GPX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
GPX5 MUTATED 0 2 4 2 2 0 6 0 0
GPX5 WILD-TYPE 25 19 40 45 30 11 43 28 12
'PDK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S985.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
PDK4 MUTATED 2 2 3
PDK4 WILD-TYPE 122 80 81
'PDK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S986.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
PDK4 MUTATED 2 3 1 1
PDK4 WILD-TYPE 80 95 29 79
'PDK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0916 (Fisher's exact test), Q value = 0.96

Table S987.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
PDK4 MUTATED 0 4 0 0 0
PDK4 WILD-TYPE 31 57 39 54 22
'PDK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S988.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
PDK4 MUTATED 2 2 0
PDK4 WILD-TYPE 71 61 71
'PDK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S989.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
PDK4 MUTATED 4 0 3 0
PDK4 WILD-TYPE 87 63 82 51
'PDK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S990.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
PDK4 MUTATED 2 2 3
PDK4 WILD-TYPE 78 129 76
'PDK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S991.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
PDK4 MUTATED 2 2 2 0
PDK4 WILD-TYPE 75 78 74 47
'PDK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0539 (Fisher's exact test), Q value = 0.85

Table S992.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
PDK4 MUTATED 0 4 2 0
PDK4 WILD-TYPE 99 67 72 36
'PDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S993.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
PDK4 MUTATED 2 2 2
PDK4 WILD-TYPE 64 95 104
'PDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S994.  Gene #100: 'PDK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
PDK4 MUTATED 3 0 1 1 0 0 1 0 0
PDK4 WILD-TYPE 22 21 43 46 32 11 48 28 12
'EPS8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S995.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
EPS8 MUTATED 2 3 2
EPS8 WILD-TYPE 122 79 82
'EPS8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 1

Table S996.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
EPS8 MUTATED 3 2 0 2
EPS8 WILD-TYPE 79 96 30 78
'EPS8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S997.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
EPS8 MUTATED 2 1 1 1 0
EPS8 WILD-TYPE 29 60 38 53 22
'EPS8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 1

Table S998.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
EPS8 MUTATED 3 0 2
EPS8 WILD-TYPE 70 63 69
'EPS8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S999.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
EPS8 MUTATED 2 3 2 0
EPS8 WILD-TYPE 89 60 83 51
'EPS8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.421 (Fisher's exact test), Q value = 1

Table S1000.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
EPS8 MUTATED 1 5 1
EPS8 WILD-TYPE 79 126 78
'EPS8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1001.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
EPS8 MUTATED 1 3 2 1
EPS8 WILD-TYPE 76 77 74 46
'EPS8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1002.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
EPS8 MUTATED 4 1 1 1
EPS8 WILD-TYPE 95 70 73 35
'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1003.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
EPS8 MUTATED 3 1 3
EPS8 WILD-TYPE 63 96 103
'EPS8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S1004.  Gene #101: 'EPS8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
EPS8 MUTATED 0 1 1 1 1 0 2 1 0
EPS8 WILD-TYPE 25 20 43 46 31 11 47 27 12
'LUZP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S1005.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
LUZP1 MUTATED 3 2 1
LUZP1 WILD-TYPE 121 80 83
'LUZP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S1006.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
LUZP1 MUTATED 2 1 1 2
LUZP1 WILD-TYPE 80 97 29 78
'LUZP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1007.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
LUZP1 MUTATED 1 0 1 1 1
LUZP1 WILD-TYPE 30 61 38 53 21
'LUZP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1008.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
LUZP1 MUTATED 2 1 1
LUZP1 WILD-TYPE 71 62 70
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1009.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
LUZP1 MUTATED 3 0 2 1
LUZP1 WILD-TYPE 88 63 83 50
'LUZP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1010.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
LUZP1 MUTATED 2 3 1
LUZP1 WILD-TYPE 78 128 78
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S1011.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
LUZP1 MUTATED 3 2 0 1
LUZP1 WILD-TYPE 74 78 76 46
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1012.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
LUZP1 MUTATED 1 1 3 1
LUZP1 WILD-TYPE 98 70 71 35
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.99

Table S1013.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
LUZP1 MUTATED 2 0 4
LUZP1 WILD-TYPE 64 97 102
'LUZP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1014.  Gene #102: 'LUZP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
LUZP1 MUTATED 1 0 2 2 0 0 0 1 0
LUZP1 WILD-TYPE 24 21 42 45 32 11 49 27 12
'C10ORF118 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1015.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
C10ORF118 MUTATED 3 2 2
C10ORF118 WILD-TYPE 121 80 82
'C10ORF118 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1016.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
C10ORF118 MUTATED 3 3 0 1
C10ORF118 WILD-TYPE 79 95 30 79
'C10ORF118 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 1

Table S1017.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
C10ORF118 MUTATED 1 1 1 3 0
C10ORF118 WILD-TYPE 30 60 38 51 22
'C10ORF118 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1018.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
C10ORF118 MUTATED 2 2 2
C10ORF118 WILD-TYPE 71 61 69
'C10ORF118 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S1019.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
C10ORF118 MUTATED 4 1 2 0
C10ORF118 WILD-TYPE 87 62 83 51
'C10ORF118 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S1020.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
C10ORF118 MUTATED 2 4 1
C10ORF118 WILD-TYPE 78 127 78
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1021.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
C10ORF118 MUTATED 2 2 1 2
C10ORF118 WILD-TYPE 75 78 75 45
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S1022.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
C10ORF118 MUTATED 3 2 2 0
C10ORF118 WILD-TYPE 96 69 72 36
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1023.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
C10ORF118 MUTATED 2 2 3
C10ORF118 WILD-TYPE 64 95 103
'C10ORF118 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1024.  Gene #103: 'C10ORF118 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
C10ORF118 MUTATED 1 0 2 1 0 0 1 0 2
C10ORF118 WILD-TYPE 24 21 42 46 32 11 48 28 10
'OR51S1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S1025.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
OR51S1 MUTATED 13 7 10
OR51S1 WILD-TYPE 111 75 74
'OR51S1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.968 (Fisher's exact test), Q value = 1

Table S1026.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
OR51S1 MUTATED 9 11 3 7
OR51S1 WILD-TYPE 73 87 27 73
'OR51S1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1027.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
OR51S1 MUTATED 4 5 3 8 1
OR51S1 WILD-TYPE 27 56 36 46 21
'OR51S1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1028.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
OR51S1 MUTATED 8 5 8
OR51S1 WILD-TYPE 65 58 63
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S1029.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
OR51S1 MUTATED 8 9 8 5
OR51S1 WILD-TYPE 83 54 77 46
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S1030.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
OR51S1 MUTATED 6 18 6
OR51S1 WILD-TYPE 74 113 73
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 1

Table S1031.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
OR51S1 MUTATED 11 9 4 5
OR51S1 WILD-TYPE 66 71 72 42
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S1032.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
OR51S1 MUTATED 11 6 9 3
OR51S1 WILD-TYPE 88 65 65 33
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S1033.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
OR51S1 MUTATED 10 7 12
OR51S1 WILD-TYPE 56 90 94
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00987 (Fisher's exact test), Q value = 0.61

Table S1034.  Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
OR51S1 MUTATED 2 0 9 5 3 3 2 1 4
OR51S1 WILD-TYPE 23 21 35 42 29 8 47 27 8

Figure S64.  Get High-res Image Gene #104: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AMPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1035.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
AMPD3 MUTATED 8 7 7
AMPD3 WILD-TYPE 116 75 77
'AMPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.85

Table S1036.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
AMPD3 MUTATED 12 6 1 3
AMPD3 WILD-TYPE 70 92 29 77
'AMPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1037.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
AMPD3 MUTATED 2 5 7 3 1
AMPD3 WILD-TYPE 29 56 32 51 21
'AMPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 1

Table S1038.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
AMPD3 MUTATED 7 7 4
AMPD3 WILD-TYPE 66 56 67
'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1039.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
AMPD3 MUTATED 8 6 7 1
AMPD3 WILD-TYPE 83 57 78 50
'AMPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 1

Table S1040.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
AMPD3 MUTATED 6 12 4
AMPD3 WILD-TYPE 74 119 75
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S1041.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
AMPD3 MUTATED 3 9 5 3
AMPD3 WILD-TYPE 74 71 71 44
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S1042.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
AMPD3 MUTATED 9 4 5 2
AMPD3 WILD-TYPE 90 67 69 34
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S1043.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
AMPD3 MUTATED 6 5 9
AMPD3 WILD-TYPE 60 92 97
'AMPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.99

Table S1044.  Gene #105: 'AMPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
AMPD3 MUTATED 2 3 2 4 0 0 4 2 3
AMPD3 WILD-TYPE 23 18 42 43 32 11 45 26 9
'CD300E MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1045.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
CD300E MUTATED 4 3 3
CD300E WILD-TYPE 120 79 81
'CD300E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.85

Table S1046.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
CD300E MUTATED 0 3 1 6
CD300E WILD-TYPE 82 95 29 74
'CD300E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S1047.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
CD300E MUTATED 3 1 1 3 0
CD300E WILD-TYPE 28 60 38 51 22
'CD300E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1048.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
CD300E MUTATED 4 2 2
CD300E WILD-TYPE 69 61 69
'CD300E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.99

Table S1049.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
CD300E MUTATED 1 2 6 1
CD300E WILD-TYPE 90 61 79 50
'CD300E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S1050.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
CD300E MUTATED 2 3 5
CD300E WILD-TYPE 78 128 74
'CD300E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1051.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
CD300E MUTATED 3 1 2 3
CD300E WILD-TYPE 74 79 74 44
'CD300E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S1052.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
CD300E MUTATED 3 3 1 2
CD300E WILD-TYPE 96 68 73 34
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.99

Table S1053.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
CD300E MUTATED 3 5 1
CD300E WILD-TYPE 63 92 105
'CD300E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1054.  Gene #106: 'CD300E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
CD300E MUTATED 1 0 2 0 1 1 1 2 1
CD300E WILD-TYPE 24 21 42 47 31 10 48 26 11
'SAG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S1055.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
SAG MUTATED 4 4 3
SAG WILD-TYPE 120 78 81
'SAG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S1056.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
SAG MUTATED 2 5 0 4
SAG WILD-TYPE 80 93 30 76
'SAG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S1057.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
SAG MUTATED 1 5 2 1 0
SAG WILD-TYPE 30 56 37 53 22
'SAG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0747 (Fisher's exact test), Q value = 0.9

Table S1058.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
SAG MUTATED 1 6 2
SAG WILD-TYPE 72 57 69
'SAG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.99

Table S1059.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
SAG MUTATED 4 0 6 1
SAG WILD-TYPE 87 63 79 50
'SAG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S1060.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
SAG MUTATED 3 3 5
SAG WILD-TYPE 77 128 74
'SAG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S1061.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
SAG MUTATED 4 2 4 1
SAG WILD-TYPE 73 78 72 46
'SAG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S1062.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SAG MUTATED 4 5 2 0
SAG WILD-TYPE 95 66 72 36
'SAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1063.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
SAG MUTATED 2 5 4
SAG WILD-TYPE 64 92 102
'SAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 0.9

Table S1064.  Gene #107: 'SAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
SAG MUTATED 1 1 1 2 3 2 0 0 1
SAG WILD-TYPE 24 20 43 45 29 9 49 28 11
'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1065.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
DDX17 MUTATED 4 2 2
DDX17 WILD-TYPE 120 80 82
'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 1

Table S1066.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
DDX17 MUTATED 2 2 1 3
DDX17 WILD-TYPE 80 96 29 77
'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S1067.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
DDX17 MUTATED 0 3 2 1 0
DDX17 WILD-TYPE 31 58 37 53 22
'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1068.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
DDX17 MUTATED 2 2 2
DDX17 WILD-TYPE 71 61 69
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 1

Table S1069.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
DDX17 MUTATED 3 1 3 1
DDX17 WILD-TYPE 88 62 82 50
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1070.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
DDX17 MUTATED 1 4 3
DDX17 WILD-TYPE 79 127 76
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0654 (Fisher's exact test), Q value = 0.85

Table S1071.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
DDX17 MUTATED 1 0 3 3
DDX17 WILD-TYPE 76 80 73 44
'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.732 (Fisher's exact test), Q value = 1

Table S1072.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
DDX17 MUTATED 2 3 1 1
DDX17 WILD-TYPE 97 68 73 35
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1073.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
DDX17 MUTATED 1 2 4
DDX17 WILD-TYPE 65 95 102
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0878 (Fisher's exact test), Q value = 0.95

Table S1074.  Gene #108: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
DDX17 MUTATED 1 1 0 0 1 0 1 1 2
DDX17 WILD-TYPE 24 20 44 47 31 11 48 27 10
'RUFY4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.99

Table S1075.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
RUFY4 MUTATED 8 1 2
RUFY4 WILD-TYPE 116 81 82
'RUFY4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S1076.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
RUFY4 MUTATED 5 2 1 3
RUFY4 WILD-TYPE 77 96 29 77
'RUFY4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1077.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
RUFY4 MUTATED 1 1 2 3 1
RUFY4 WILD-TYPE 30 60 37 51 21
'RUFY4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1078.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
RUFY4 MUTATED 3 2 3
RUFY4 WILD-TYPE 70 61 68
'RUFY4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S1079.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
RUFY4 MUTATED 5 1 3 2
RUFY4 WILD-TYPE 86 62 82 49
'RUFY4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1080.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
RUFY4 MUTATED 3 5 3
RUFY4 WILD-TYPE 77 126 76
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 1

Table S1081.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
RUFY4 MUTATED 2 4 4 1
RUFY4 WILD-TYPE 75 76 72 46
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S1082.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
RUFY4 MUTATED 3 3 4 1
RUFY4 WILD-TYPE 96 68 70 35
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S1083.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
RUFY4 MUTATED 2 4 5
RUFY4 WILD-TYPE 64 93 101
'RUFY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.994 (Fisher's exact test), Q value = 1

Table S1084.  Gene #109: 'RUFY4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
RUFY4 MUTATED 1 0 2 3 1 0 3 1 0
RUFY4 WILD-TYPE 24 21 42 44 31 11 46 27 12
'MAP3K5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00443 (Fisher's exact test), Q value = 0.52

Table S1085.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MAP3K5 MUTATED 2 10 8
MAP3K5 WILD-TYPE 122 72 76

Figure S65.  Get High-res Image Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP3K5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 1

Table S1086.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MAP3K5 MUTATED 6 9 2 3
MAP3K5 WILD-TYPE 76 89 28 77
'MAP3K5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S1087.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MAP3K5 MUTATED 3 6 2 3 1
MAP3K5 WILD-TYPE 28 55 37 51 21
'MAP3K5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S1088.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MAP3K5 MUTATED 6 5 4
MAP3K5 WILD-TYPE 67 58 67
'MAP3K5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00908 (Fisher's exact test), Q value = 0.61

Table S1089.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MAP3K5 MUTATED 2 9 8 1
MAP3K5 WILD-TYPE 89 54 77 50

Figure S66.  Get High-res Image Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP3K5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1090.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MAP3K5 MUTATED 4 8 8
MAP3K5 WILD-TYPE 76 123 71
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1091.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MAP3K5 MUTATED 7 5 5 2
MAP3K5 WILD-TYPE 70 75 71 45
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S1092.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MAP3K5 MUTATED 6 8 4 1
MAP3K5 WILD-TYPE 93 63 70 35
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1093.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MAP3K5 MUTATED 6 8 5
MAP3K5 WILD-TYPE 60 89 101
'MAP3K5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S1094.  Gene #110: 'MAP3K5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MAP3K5 MUTATED 4 1 3 2 4 1 2 1 1
MAP3K5 WILD-TYPE 21 20 41 45 28 10 47 27 11
'NTN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 1

Table S1095.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
NTN4 MUTATED 7 3 5
NTN4 WILD-TYPE 117 79 79
'NTN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.92

Table S1096.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
NTN4 MUTATED 1 8 3 3
NTN4 WILD-TYPE 81 90 27 77
'NTN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S1097.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
NTN4 MUTATED 2 5 3 1 0
NTN4 WILD-TYPE 29 56 36 53 22
'NTN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1098.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
NTN4 MUTATED 4 5 2
NTN4 WILD-TYPE 69 58 69
'NTN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S1099.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
NTN4 MUTATED 6 2 5 2
NTN4 WILD-TYPE 85 61 80 49
'NTN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S1100.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
NTN4 MUTATED 3 7 5
NTN4 WILD-TYPE 77 124 74
'NTN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1101.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
NTN4 MUTATED 5 5 4 1
NTN4 WILD-TYPE 72 75 72 46
'NTN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.99

Table S1102.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
NTN4 MUTATED 2 6 6 1
NTN4 WILD-TYPE 97 65 68 35
'NTN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S1103.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
NTN4 MUTATED 5 5 5
NTN4 WILD-TYPE 61 92 101
'NTN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S1104.  Gene #111: 'NTN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
NTN4 MUTATED 2 0 5 2 3 0 2 1 0
NTN4 WILD-TYPE 23 21 39 45 29 11 47 27 12
'BCMO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S1105.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
BCMO1 MUTATED 10 2 5
BCMO1 WILD-TYPE 114 80 79
'BCMO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.77

Table S1106.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
BCMO1 MUTATED 3 2 4 8
BCMO1 WILD-TYPE 79 96 26 72

Figure S67.  Get High-res Image Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCMO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S1107.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
BCMO1 MUTATED 1 4 3 4 0
BCMO1 WILD-TYPE 30 57 36 50 22
'BCMO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S1108.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
BCMO1 MUTATED 6 3 3
BCMO1 WILD-TYPE 67 60 68
'BCMO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1109.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
BCMO1 MUTATED 7 4 4 2
BCMO1 WILD-TYPE 84 59 81 49
'BCMO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 1

Table S1110.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
BCMO1 MUTATED 5 7 5
BCMO1 WILD-TYPE 75 124 74
'BCMO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1111.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
BCMO1 MUTATED 6 4 3 4
BCMO1 WILD-TYPE 71 76 73 43
'BCMO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 1

Table S1112.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
BCMO1 MUTATED 5 5 5 2
BCMO1 WILD-TYPE 94 66 69 34
'BCMO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1113.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
BCMO1 MUTATED 6 4 6
BCMO1 WILD-TYPE 60 93 100
'BCMO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 1

Table S1114.  Gene #112: 'BCMO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
BCMO1 MUTATED 2 0 5 2 1 1 2 2 1
BCMO1 WILD-TYPE 23 21 39 45 31 10 47 26 11
'OR11H12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S1115.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
OR11H12 MUTATED 5 4 6
OR11H12 WILD-TYPE 119 78 78
'OR11H12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 1

Table S1116.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
OR11H12 MUTATED 5 5 2 3
OR11H12 WILD-TYPE 77 93 28 77
'OR11H12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S1117.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
OR11H12 MUTATED 3 3 2 2 2
OR11H12 WILD-TYPE 28 58 37 52 20
'OR11H12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1118.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
OR11H12 MUTATED 6 3 3
OR11H12 WILD-TYPE 67 60 68
'OR11H12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S1119.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
OR11H12 MUTATED 5 4 4 2
OR11H12 WILD-TYPE 86 59 81 49
'OR11H12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S1120.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
OR11H12 MUTATED 3 7 5
OR11H12 WILD-TYPE 77 124 74
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 1

Table S1121.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
OR11H12 MUTATED 3 2 6 3
OR11H12 WILD-TYPE 74 78 70 44
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 1

Table S1122.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
OR11H12 MUTATED 5 5 2 2
OR11H12 WILD-TYPE 94 66 72 34
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S1123.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
OR11H12 MUTATED 4 6 3
OR11H12 WILD-TYPE 62 91 103
'OR11H12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S1124.  Gene #113: 'OR11H12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
OR11H12 MUTATED 2 2 1 1 3 0 2 2 0
OR11H12 WILD-TYPE 23 19 43 46 29 11 47 26 12
'SI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 1

Table S1125.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
SI MUTATED 24 20 23
SI WILD-TYPE 100 62 61
'SI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S1126.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
SI MUTATED 24 22 6 15
SI WILD-TYPE 58 76 24 65
'SI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 1

Table S1127.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
SI MUTATED 5 19 11 11 5
SI WILD-TYPE 26 42 28 43 17
'SI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0568 (Fisher's exact test), Q value = 0.85

Table S1128.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
SI MUTATED 11 19 21
SI WILD-TYPE 62 44 50
'SI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1129.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
SI MUTATED 26 14 18 9
SI WILD-TYPE 65 49 67 42
'SI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S1130.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
SI MUTATED 22 30 15
SI WILD-TYPE 58 101 64
'SI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S1131.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
SI MUTATED 16 20 15 11
SI WILD-TYPE 61 60 61 36
'SI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S1132.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
SI MUTATED 25 15 17 5
SI WILD-TYPE 74 56 57 31
'SI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S1133.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
SI MUTATED 13 18 29
SI WILD-TYPE 53 79 77
'SI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.99

Table S1134.  Gene #114: 'SI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
SI MUTATED 6 2 10 13 7 1 12 3 6
SI WILD-TYPE 19 19 34 34 25 10 37 25 6
'ADAM33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1135.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
ADAM33 MUTATED 5 5 6
ADAM33 WILD-TYPE 119 77 78
'ADAM33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S1136.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
ADAM33 MUTATED 3 8 1 4
ADAM33 WILD-TYPE 79 90 29 76
'ADAM33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1137.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
ADAM33 MUTATED 3 6 3 1 1
ADAM33 WILD-TYPE 28 55 36 53 21
'ADAM33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1138.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
ADAM33 MUTATED 4 6 4
ADAM33 WILD-TYPE 69 57 67
'ADAM33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1139.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
ADAM33 MUTATED 5 4 6 1
ADAM33 WILD-TYPE 86 59 79 50
'ADAM33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S1140.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
ADAM33 MUTATED 3 9 4
ADAM33 WILD-TYPE 77 122 75
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S1141.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
ADAM33 MUTATED 3 5 5 3
ADAM33 WILD-TYPE 74 75 71 44
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S1142.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
ADAM33 MUTATED 4 4 6 2
ADAM33 WILD-TYPE 95 67 68 34
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1143.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
ADAM33 MUTATED 4 6 6
ADAM33 WILD-TYPE 62 91 100
'ADAM33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S1144.  Gene #115: 'ADAM33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
ADAM33 MUTATED 1 1 3 2 3 0 4 1 1
ADAM33 WILD-TYPE 24 20 41 45 29 11 45 27 11
'RICTOR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 1

Table S1145.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
RICTOR MUTATED 3 4 5
RICTOR WILD-TYPE 121 78 79
'RICTOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S1146.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
RICTOR MUTATED 4 3 2 3
RICTOR WILD-TYPE 78 95 28 77
'RICTOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1147.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
RICTOR MUTATED 3 3 2 1 0
RICTOR WILD-TYPE 28 58 37 53 22
'RICTOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 1

Table S1148.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
RICTOR MUTATED 4 2 3
RICTOR WILD-TYPE 69 61 68
'RICTOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S1149.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
RICTOR MUTATED 4 3 4 1
RICTOR WILD-TYPE 87 60 81 50
'RICTOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1150.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
RICTOR MUTATED 3 6 3
RICTOR WILD-TYPE 77 125 76
'RICTOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1151.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
RICTOR MUTATED 3 4 4 0
RICTOR WILD-TYPE 74 76 72 47
'RICTOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S1152.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
RICTOR MUTATED 5 3 3 0
RICTOR WILD-TYPE 94 68 71 36
'RICTOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1153.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
RICTOR MUTATED 4 3 4
RICTOR WILD-TYPE 62 94 102
'RICTOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S1154.  Gene #116: 'RICTOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
RICTOR MUTATED 1 1 3 3 1 0 2 0 0
RICTOR WILD-TYPE 24 20 41 44 31 11 47 28 12
'MED17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.95

Table S1155.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 124 82 84
MED17 MUTATED 0 3 2
MED17 WILD-TYPE 124 79 82
'MED17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 1

Table S1156.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 82 98 30 80
MED17 MUTATED 2 1 1 1
MED17 WILD-TYPE 80 97 29 79
'MED17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1157.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 31 61 39 54 22
MED17 MUTATED 0 2 0 1 1
MED17 WILD-TYPE 31 59 39 53 21
'MED17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1158.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 63 71
MED17 MUTATED 1 1 2
MED17 WILD-TYPE 72 62 69
'MED17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.99

Table S1159.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 91 63 85 51
MED17 MUTATED 1 0 4 0
MED17 WILD-TYPE 90 63 81 51
'MED17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S1160.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 80 131 79
MED17 MUTATED 1 1 3
MED17 WILD-TYPE 79 130 76
'MED17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.99

Table S1161.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 77 80 76 47
MED17 MUTATED 2 0 3 0
MED17 WILD-TYPE 75 80 73 47
'MED17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S1162.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 99 71 74 36
MED17 MUTATED 2 3 0 0
MED17 WILD-TYPE 97 68 74 36
'MED17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1163.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 66 97 106
MED17 MUTATED 1 3 1
MED17 WILD-TYPE 65 94 105
'MED17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 0.85

Table S1164.  Gene #117: 'MED17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8 CLUS_9
ALL 25 21 44 47 32 11 49 28 12
MED17 MUTATED 2 1 0 0 2 0 0 0 0
MED17 WILD-TYPE 23 20 44 47 30 11 49 28 12
Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SKCM-TM/22813361/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/SKCM-TM/22546664/SKCM-TM.transferedmergedcluster.txt

  • Number of patients = 290

  • Number of significantly mutated genes = 117

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
Copyright © 2016 Broad Institute TCGA GDAC as part of the TCGA Research Network. All rights reserved.
Made with Nozzle