Correlation between gene mutation status and molecular subtypes
Stomach Adenocarcinoma (Primary solid tumor)
28 January 2016  |  analyses__2016_01_28
Maintainer Information
Citation Information
doi:10.7908/C1RJ4HZP
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2016): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1RJ4HZP
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 1193 genes and 10 molecular subtypes across 393 patients, 4165 significant findings detected with P value < 0.05 and Q value < 0.25.

  • TP53 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARID1A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RNF43 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • XYLT2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KRAS mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • LARP4B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HLA-B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RHOA mutation correlated to 'CN_CNMF'.

  • SMAD4 mutation correlated to 'MIRSEQ_CNMF'.

  • B2M mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C7ORF50 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MLL4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTEN mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CDH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GNG12 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PGM5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CBWD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZBTB20 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARID4A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • MLL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FBXW7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • MBD6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MUC6 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • DDX17 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HOXD8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZBTB7C mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KLF3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TENC1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MTG1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LARP7 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • MVK mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KIAA0406 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • FRMD4A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • APC mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • TRIP4 mutation correlated to 'CN_CNMF'.

  • CTNND1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FAM9A mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • SLC27A3 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PAX6 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • DSTN mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CIC mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • OSBP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CEP57 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PRRG1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • BCOR mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA1967 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KIAA1267 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF48 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • WASF3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • NLK mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CYP27B1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • C14ORF43 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PRSS36 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • FZD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NFASC mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GRK4 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ATXN2L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GLI1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • INPPL1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SOX7 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • FHOD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RNF128 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HLA-A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MFRP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • EIF5B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C9ORF131 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • BCORL1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PAFAH1B1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • EPB49 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DDC mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • IWS1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • LMAN1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM116A mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KIAA0664 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • JARID2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLC9A10 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZFP36L2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CTCF mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HDAC4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NAPEPLD mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • RASA1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RHOQ mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NT5M mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CELSR1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CR1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C19ORF40 mutation correlated to 'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WNT1 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IRF2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CR2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LEMD1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • INF2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CR1L mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • NPHP1 mutation correlated to 'CN_CNMF'.

  • ADAMDEC1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • GXYLT1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EIF4G3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PIGT mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • POLM mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CCDC108 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA0195 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CDH16 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARHGAP5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • STK38 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • PTCHD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • TBX4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZMYM4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SPTY2D1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • SLC12A9 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • ALPK2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CABP5 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • MED15 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • GYLTL1B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IL2RG mutation correlated to 'CN_CNMF'.

  • CCDC88A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PIGB mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • PIK3CA mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PPIG mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ATP6V1B1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PLEKHA6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RTKN2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • PAX2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • SERPINI1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • TMEM41A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ADAM30 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • B3GNT5 mutation correlated to 'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BTBD11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ART1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FOXN3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SPG20 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WNK4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • TTF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • SCLT1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PALB2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ABCC4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • EAF2 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • BTBD7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MAGEE2 mutation correlated to 'METHLYATION_CNMF'.

  • DOCK5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZFHX4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RB1CC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PRRG3 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • KIAA1462 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KCNJ10 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GANAB mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • GPSM3 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • WNT16 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIRREL mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MTMR9 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • FAHD2B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • KLRK1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KLC2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • WDR7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TCHP mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • SNRK mutation correlated to 'CN_CNMF'.

  • SNAPC1 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • ALG10 mutation correlated to 'METHLYATION_CNMF'.

  • HDLBP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GRINA mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RAB42 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • SAMD9L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SLC22A6 mutation correlated to 'CN_CNMF'.

  • SVIL mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CCDC148 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MOBKL1A mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SETDB2 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZNF43 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • NOX5 mutation correlated to 'CN_CNMF'.

  • ANKRD34A mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PHACTR4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RAD50 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • JAK1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM155B mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DIDO1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CASP8 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • NWD1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • RBM6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PBRM1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TOP2A mutation correlated to 'MIRSEQ_CNMF'.

  • KIF21A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • LTBP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZC3H4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TATDN1 mutation correlated to 'CN_CNMF'.

  • PPIP5K2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • C5ORF42 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C13ORF33 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • COIL mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • TP53BP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • TGFBR2 mutation correlated to 'CN_CNMF'.

  • FBXO21 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TMEM41B mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • ORC3L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CBWD6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RABGAP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SRCIN1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • NIN mutation correlated to 'RPPA_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PET112L mutation correlated to 'CN_CNMF'.

  • ZKSCAN5 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • CTSC mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AQP8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KANK4 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • ACVR1B mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • STAT6 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • PUS7L mutation correlated to 'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARID2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZMYM3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BPTF mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MTIF2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ARHGAP18 mutation correlated to 'MIRSEQ_CNMF'.

  • EFNB3 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NDST2 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • MICALCL mutation correlated to 'RPPA_CNMF'.

  • MMP3 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • OPTN mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZFHX3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ACP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • YY1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • CUL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • DAO mutation correlated to 'CN_CNMF'.

  • TRUB1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • PKN2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KLHDC5 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • TFE3 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GCC2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ARAF mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • CDKN2A mutation correlated to 'MIRSEQ_MATURE_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MDM2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • C4ORF6 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CASC3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CCDC153 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • SF3B3 mutation correlated to 'METHLYATION_CNMF'.

  • MLL3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CA2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CNBD1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DNAH7 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ASB11 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CDC14A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NHLRC1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • ZC3H18 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CNMF'.

  • GLYR1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FILIP1L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • USP26 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • VPS13B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RCOR3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • CASD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CDC25C mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • BCL9L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • TNFSF10 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF124 mutation correlated to 'MRNASEQ_CNMF'.

  • KNTC1 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GAS6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HCFC1R1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NCAPD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TAF1L mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • C17ORF57 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BEND3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CNMF'.

  • FAM98C mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • KIAA0100 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PLOD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RAD51AP2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • U2AF2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MFN1 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ATP6V1C2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NFE2L1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ERF mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • TAS2R10 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM82A1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • DYRK4 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • BTNL3 mutation correlated to 'RPPA_CNMF'.

  • ADNP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ELF3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NID2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • FBN3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ABCA6 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • IDE mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • BCLAF1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DLGAP3 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ZC3H13 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RTN2 mutation correlated to 'CN_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RAI1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C6ORF165 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HIAT1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • HSPG2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • NBN mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • ERBB3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • IPO5 mutation correlated to 'METHLYATION_CNMF'.

  • MARVELD3 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NOS3 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ANKRD20A4 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • UGP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KLHDC8B mutation correlated to 'METHLYATION_CNMF'.

  • ABCB6 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TMC4 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • TM6SF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ARID1B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TNKS1BP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ERBB2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM70B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • MYEOV mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • IRS1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RPL22 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • DDX26B mutation correlated to 'RPPA_CNMF'.

  • EPHX1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CLMN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • TRAM1L1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • EHMT2 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MIA2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • NT5DC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SYCP1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • ZNF878 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • KIAA1009 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SENP3 mutation correlated to 'CN_CNMF'.

  • ERBB4 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • COL12A1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SNRNP35 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTPN4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TNFRSF9 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HTR7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • OBSCN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLC12A7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA1522 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • FERMT2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PPP1R13B mutation correlated to 'CN_CNMF'.

  • KIAA0240 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • TP53BP1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CHPF2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GPR141 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • PPP1R15A mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • KYNU mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • RIF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TBC1D10C mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • UHRF1BP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DLAT mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CD93 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • SGOL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ADNP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DPP7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CNNM1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IFRD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IGFBP1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SH3KBP1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • HIST1H1A mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TUBE1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • IPO11 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • IDH2 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZCCHC11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SYNCRIP mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • BAT3 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • PRPF40B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • OXNAD1 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • YLPM1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PLEKHA5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TM7SF4 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • CTNNB1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SNAPC2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • MAP2K7 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • CETN3 mutation correlated to 'CN_CNMF'.

  • CUBN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TRMT6 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ATM mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PMEPA1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • POP1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • EPHA2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MPRIP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LARP1B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • EIF5A2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RING1 mutation correlated to 'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM83E mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CLDN6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SULF1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PCGF3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SF3B2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C19ORF70 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GPR161 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RRS1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZCRB1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • LINGO4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • MAP9 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CCDC27 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • DDX60 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • ACTL6A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • PFKP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • OR2J3 mutation correlated to 'METHLYATION_CNMF'.

  • SGK3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • SMTN mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLC9A11 mutation correlated to 'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • JHDM1D mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • GLT8D1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • DAPK1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EDNRB mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C16ORF70 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • SLC10A6 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CCDC80 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DNAJC1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CADPS2 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • C16ORF63 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • GCDH mutation correlated to 'MRNASEQ_CNMF'.

  • FBXO34 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SERPINA1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • KIAA1632 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CCDC138 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ALDH3A1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PAMR1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZNF776 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • SH2B1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GPR82 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ANK3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MLH1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BCKDHA mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MMP10 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HAX1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • C11ORF70 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • AKAP11 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MAN1C1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KCTD3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • RALGAPB mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • CRYGA mutation correlated to 'RPPA_CHIERARCHICAL'.

  • CROT mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MAP7D3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • ZFC3H1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NCOA7 mutation correlated to 'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • USP13 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • USP15 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM113B mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PCCA mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA0649 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CD79A mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • C22ORF30 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SRP72 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PLAG1 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HSPA14 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • CYP7B1 mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • FASTKD1 mutation correlated to 'CN_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NEUROD6 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • RBMX mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • C10ORF71 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • MRE11A mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • MAP2K1 mutation correlated to 'MRNASEQ_CNMF'.

  • C1ORF177 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • IGF2BP3 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • AKAP13 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ABCE1 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KLHL14 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CNMF'.

  • H2AFY mutation correlated to 'RPPA_CHIERARCHICAL'.

  • USP35 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • ZFP36L1 mutation correlated to 'CN_CNMF'.

  • RASAL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GTF3C1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA0748 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • USP1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RNASEL mutation correlated to 'CN_CNMF'.

  • TIMP3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • RELT mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • HAUS3 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CCDC150 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GLIPR1L2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • OSGEPL1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • EFHA2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CDH24 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C6ORF150 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MGA mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SH3RF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HTR1E mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FLNB mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NCAPH mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLFN13 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • GATA3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • RDBP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TNRC6C mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF292 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TPTE2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • KRTAP5-5 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SERPINB12 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TAF7L mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • INTS12 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • CTSA mutation correlated to 'MIRSEQ_CNMF'.

  • C1QA mutation correlated to 'CN_CNMF'.

  • KCNN3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • NPHS1 mutation correlated to 'MRNASEQ_CNMF'.

  • HSP90B1 mutation correlated to 'CN_CNMF'.

  • LRFN3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SMARCB1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ITGA6 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TRIP11 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • PNPLA7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C7ORF49 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • C14ORF50 mutation correlated to 'CN_CNMF'.

  • PKN1 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • ASAP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • FAM133A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • METTL6 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • EFHD1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • VPS13A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ANKRD28 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • EXPH5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ABCB4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • HRNR mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BAHCC1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C1RL mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • USP21 mutation correlated to 'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZBTB38 mutation correlated to 'CN_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CBLN3 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • AXIN2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • CFI mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • UNC50 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TH1L mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • HEXDC mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • SOS2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SPOCD1 mutation correlated to 'CN_CNMF'.

  • STX2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • SMAD7 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ALDH2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SPATA5L1 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • CDC42EP1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • SPATA20 mutation correlated to 'CN_CNMF'.

  • KIN mutation correlated to 'CN_CNMF'.

  • TMEM87B mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • SOAT1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • IL7R mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • KRT222 mutation correlated to 'CN_CNMF'.

  • AP2A2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • RUSC2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FAM186B mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MEGF8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CTSD mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FNDC4 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • LIPH mutation correlated to 'METHLYATION_CNMF'.

  • FBXO43 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • AGAP6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • GPR160 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • CSF3R mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PRMT3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • FGF7 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AGAP5 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • STEAP2 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CDKL3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • FAM113A mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • ZNF207 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ICAM3 mutation correlated to 'RPPA_CNMF'.

  • MKL1 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • HSP90AA1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • PRPF4B mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • BRCA2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MAP3K1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ASPN mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • PHACTR1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KDM3B mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • PDCD1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • SYCP2L mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • RNF111 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • OPLAH mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DYX1C1 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • RSF1 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • PRICKLE4 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DNAJA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C11ORF80 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CLCA4 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ANAPC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TAF6 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • C9ORF41 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • MARCH7 mutation correlated to 'CN_CNMF'.

  • SDAD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PPIAL4A mutation correlated to 'CN_CNMF'.

  • SCN10A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PSD mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NUFIP2 mutation correlated to 'CN_CNMF'.

  • FRYL mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • MYCN mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TNK2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ADCY10 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • QRFPR mutation correlated to 'MIRSEQ_CNMF'.

  • C19ORF26 mutation correlated to 'MRNASEQ_CNMF'.

  • SPANXC mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • XRN1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • SORBS2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • LRP12 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIF13A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • C6 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • HIVEP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM123C mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • EPHB6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PTPN13 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CALCRL mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • AZGP1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DOK1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • CDC5L mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • NOBOX mutation correlated to 'CN_CNMF'.

  • GPR45 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ACTR8 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • COL11A1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CTSO mutation correlated to 'RPPA_CHIERARCHICAL'.

  • PAM mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • TLE1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • PTOV1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • SLC6A11 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • BRCA1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HAUS6 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARHGEF11 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MGST2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CD4 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • RP1L1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • UVRAG mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CHD1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZMYND8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GPATCH4 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MASTL mutation correlated to 'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • KIRREL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HSPB8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • GTF3C4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PPP3CA mutation correlated to 'CN_CNMF'.

  • NOB1 mutation correlated to 'MIRSEQ_CNMF'.

  • C15ORF52 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MEN1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • MAPK15 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • DDX50 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ATP6V1H mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • KIAA1609 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • ITPR2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LIMCH1 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • NAGPA mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PDS5A mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • CEP110 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • KCNH4 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TCF20 mutation correlated to 'CN_CNMF'.

  • EPB41 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • AP3M2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • EHBP1 mutation correlated to 'MRNASEQ_CNMF'.

  • CRAT mutation correlated to 'CN_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • KIFAP3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ELL2 mutation correlated to 'CN_CNMF'.

  • CEP290 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MBD2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • DDX43 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • DDHD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ECSIT mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • KIAA1543 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • UPK2 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • IGFBP7 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KCNQ1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • HAPLN1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • AXIN1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • AOC3 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • ANKRD23 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • SOHLH2 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLC26A7 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RHOBTB2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DGKA mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • KIAA1797 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • SERPINB10 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SMCHD1 mutation correlated to 'MIRSEQ_CNMF'.

  • THEMIS mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • BMPR2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • R3HDM2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • BLMH mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PLEKHO1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • INPP5F mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NLRC5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CDC6 mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_MATURE_CNMF'.

  • EFHA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • GPR124 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TEX15 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CD33 mutation correlated to 'RPPA_CNMF'.

  • GIPC3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PRAMEF14 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • PYGO2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • AVEN mutation correlated to 'MRNASEQ_CNMF'.

  • BAT4 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • GPR1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • KCTD9 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF514 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • TRIOBP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CCAR1 mutation correlated to 'MRNASEQ_CNMF'.

  • TMEM127 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ZNF142 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MRPS5 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CEP250 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARMC4 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • PCF11 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • C2ORF76 mutation correlated to 'CN_CNMF'.

  • MBNL2 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • ITGAE mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TNFSF13 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CASKIN2 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • ALPK1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • SUCLG2 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • NOS1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLA mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • C9ORF98 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • TOPBP1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KCNH2 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAHD2A mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • PTPN3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PABPC4 mutation correlated to 'CN_CNMF'.

  • SLC39A8 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RIMKLB mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • UGT1A4 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • PLA2G15 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • ZNF800 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • PHACTR2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • PLK2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SERPINB7 mutation correlated to 'CN_CNMF'.

  • ZNF295 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • RINT1 mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • PDS5B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • YBX2 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • CNOT6 mutation correlated to 'CN_CNMF'.

  • ESRP1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LCE1A mutation correlated to 'MIRSEQ_CHIERARCHICAL'.

  • PPARGC1B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MRPL24 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • F8 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • GOLT1B mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • HOOK1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARHGEF5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • CIB3 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TBL1XR1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • WHSC1L1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C1ORF14 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CUL1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C9ORF46 mutation correlated to 'MIRSEQ_CNMF'.

  • VPRBP mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • INO80D mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • B4GALNT4 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTX4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ARHGEF17 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM109B mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HGF mutation correlated to 'RPPA_CNMF'.

  • GPR114 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • DHRS9 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • RGS12 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TRIP10 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BTBD12 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WAPAL mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CAB39L mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • ZCCHC2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • WDR90 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • UGT2A3 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BRF1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • DUSP9 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • KIAA0427 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • UBXN6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EEF2K mutation correlated to 'MIRSEQ_CNMF'.

  • C9ORF25 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • CD58 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • C20ORF7 mutation correlated to 'CN_CNMF'.

  • AMELX mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • POMGNT1 mutation correlated to 'RPPA_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • ATP2B4 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • KIAA1539 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SEZ6 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NARG2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CHD3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • THSD1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CTNNA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • BANK1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ZNF441 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • EFNA4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • COL20A1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • SEC16B mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SIX3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLC7A13 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • EMILIN3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • EPB41L5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CCT6A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • DGAT1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • VWA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ABCA5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • LONRF1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PHF10 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • CYP4B1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • EXO1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • THYN1 mutation correlated to 'METHLYATION_CNMF'.

  • HIVEP1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF687 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTPN23 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ADAM7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • NOP2 mutation correlated to 'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • FAM26E mutation correlated to 'RPPA_CHIERARCHICAL'.

  • OTX2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IRS4 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • RUSC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CNTLN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NUAK1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GCG mutation correlated to 'CN_CNMF'.

  • VPS4B mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • NHSL2 mutation correlated to 'RPPA_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • MYO9B mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PCLO mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KCNK13 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • SHMT2 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • TBC1D22B mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • TACC2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EXOC3L2 mutation correlated to 'MIRSEQ_CNMF'.

  • BAG4 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • SLC26A8 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • MBOAT2 mutation correlated to 'MRNASEQ_CNMF'.

  • GIMAP7 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • C2CD3 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TAF1D mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • CEP120 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ANKMY2 mutation correlated to 'MIRSEQ_CNMF'.

  • TYRO3 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CHIERARCHICAL'.

  • MCM4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PPP1R12C mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TPD52L1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • IGFALS mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SMAD2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ZMYND19 mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • UBE2Q1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RYR2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • STAU1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • DLL1 mutation correlated to 'CN_CNMF'.

  • E2F7 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • MYOCD mutation correlated to 'CN_CNMF'.

  • NRIP3 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • ABCA7 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CWF19L2 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • FIBP mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PLEKHH3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZDHHC7 mutation correlated to 'CN_CNMF' and 'METHLYATION_CNMF'.

  • HTRA2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • INSIG2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • CLSTN1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • HNF1B mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • IBTK mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SALL2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • ELMO1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • BRAF mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • NFAT5 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ESRP2 mutation correlated to 'CN_CNMF'.

  • DHX36 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • ZCCHC6 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C8ORF38 mutation correlated to 'MIRSEQ_CNMF'.

  • NTAN1 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • MLXIPL mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • SFRS18 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • PADI3 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • SLC38A6 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • RGS22 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • EVI5 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • NEIL1 mutation correlated to 'RPPA_CNMF'.

  • IGDCC4 mutation correlated to 'MRNASEQ_CNMF' and 'MIRSEQ_CNMF'.

  • TRPM6 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • IL1F7 mutation correlated to 'MIRSEQ_CNMF'.

  • BRPF3 mutation correlated to 'METHLYATION_CNMF'.

  • ACACB mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PIGZ mutation correlated to 'RPPA_CHIERARCHICAL'.

  • SPATA2L mutation correlated to 'CN_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • SLC9A1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • RAB40B mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CSNK1G3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • ITGB8 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • ADAMTS18 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CNMF'.

  • NPR3 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • MTSS1L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • MINA mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • CYTH3 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PCDH19 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • C11ORF88 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • MON2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • AKD1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • EXOSC8 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CDH11 mutation correlated to 'METHLYATION_CNMF' and 'MRNASEQ_CNMF'.

  • HCRTR1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ANKRD12 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BMPR1B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • CRYBG3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIDINS220 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • INSM2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • ELOVL2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • GON4L mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MSL3 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • FANCA mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • SMPD1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • PIWIL2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF7 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CHST4 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SCGB1A1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ACTG2 mutation correlated to 'RPPA_CNMF' and 'MIRSEQ_CNMF'.

  • ZBTB40 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • PIGO mutation correlated to 'CN_CNMF' and 'MRNASEQ_CNMF'.

  • NAA16 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • NRN1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • EPN1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • PPARG mutation correlated to 'MIRSEQ_CNMF'.

  • C1ORF141 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • EXOSC10 mutation correlated to 'MRNASEQ_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • RAB14 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • IGSF9B mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ARNT mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • CSNK2A2 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • HOXA1 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SYNJ1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ABCC2 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • HEPACAM2 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • MAP4K4 mutation correlated to 'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • B4GALT6 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • NAA25 mutation correlated to 'METHLYATION_CNMF'.

  • SAFB mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • ABLIM2 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • CEL mutation correlated to 'CN_CNMF'.

  • FAM178A mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • BUB1B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EEA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • KCNH3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DIP2C mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KLHL1 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZC3H3 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLC22A16 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • NHLRC2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • CEACAM3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CHIERARCHICAL'.

  • THBS3 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • GPC4 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ABTB1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • NEK7 mutation correlated to 'CN_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • QTRTD1 mutation correlated to 'MIRSEQ_CNMF'.

  • UACA mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • TMEM206 mutation correlated to 'MIRSEQ_CNMF'.

  • CLGN mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • ACAA2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC25A45 mutation correlated to 'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TMEFF2 mutation correlated to 'MRNASEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PGBD1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • FCN2 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • PTPRJ mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C11ORF63 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HSF4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • FAM167A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DENND4C mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • DEK mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • SP140 mutation correlated to 'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EGR1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PKD2L2 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • FGF13 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • MAP4K5 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ARID5B mutation correlated to 'RPPA_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CCDC92 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • CNGA1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • WDR53 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • EPB41L4B mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • RNMT mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SUCNR1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • NYNRIN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PHTF1 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CARD14 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • CASKIN1 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • C13ORF18 mutation correlated to 'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • CCDC37 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ETV1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • TSPAN13 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CNMF'.

  • MAP1A mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FBXO32 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • PRAMEF2 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • RERE mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WFIKKN2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • OR1L3 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • MORC1 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • AP3B1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • EFHC1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DTNBP1 mutation correlated to 'METHLYATION_CNMF' and 'MIRSEQ_CNMF'.

  • KCNH1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • BBS10 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CHIERARCHICAL'.

  • SMARCC2 mutation correlated to 'RPPA_CNMF'.

  • NRK mutation correlated to 'RPPA_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WBP11 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • WSB2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SET mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • CASC5 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • BEND5 mutation correlated to 'CN_CNMF' and 'RPPA_CNMF'.

  • FGF22 mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EIF2AK3 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • GALK1 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ZNF334 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CSNK1G1 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • HIST1H1B mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • KIF20B mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • SASH3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TCERG1 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • FBXL22 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • PARP15 mutation correlated to 'MRNASEQ_CNMF'.

  • NCAN mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'RPPA_CHIERARCHICAL'.

  • SLC30A3 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • LRP1B mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • GNAS mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • FER mutation correlated to 'RPPA_CNMF' and 'RPPA_CHIERARCHICAL'.

  • GPATCH2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • GFOD1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • C3ORF33 mutation correlated to 'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MYCL1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • TNFRSF13B mutation correlated to 'MRNASEQ_CNMF'.

  • ABCC1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_CHIERARCHICAL'.

  • ATG9A mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • IGBP1 mutation correlated to 'METHLYATION_CNMF'.

  • HIVEP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAM60A mutation correlated to 'RPPA_CHIERARCHICAL'.

  • ARV1 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • TM9SF3 mutation correlated to 'CN_CNMF'.

  • ATP2C1 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ISM1 mutation correlated to 'CN_CNMF'.

  • CLDN5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • C1ORF131 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • TBC1D5 mutation correlated to 'CN_CNMF',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ZNF428 mutation correlated to 'METHLYATION_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SLC38A1 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • ZNF570 mutation correlated to 'MIRSEQ_CNMF'.

  • GPR115 mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

  • SLC45A4 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • NKX2-3 mutation correlated to 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • EPHA3 mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • GABRG3 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL', and 'MRNASEQ_CNMF'.

  • EPHA10 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • SLC44A4 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • PPL mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TMEM63A mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF', and 'MIRSEQ_CHIERARCHICAL'.

  • ANKRD42 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_CNMF'.

  • AVPR1A mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • VILL mutation correlated to 'MIRSEQ_CNMF'.

  • P2RY12 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA1217 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MRNASEQ_CHIERARCHICAL'.

  • MEPCE mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CNMF'.

  • TRIM27 mutation correlated to 'MRNASEQ_CNMF'.

  • ITGAV mutation correlated to 'MIRSEQ_CNMF' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PATL1 mutation correlated to 'CN_CNMF'.

  • TLR4 mutation correlated to 'MIRSEQ_MATURE_CNMF'.

  • XRCC2 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CRYBB1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • MED23 mutation correlated to 'CN_CNMF',  'MIRSEQ_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SGK196 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • TDG mutation correlated to 'RPPA_CNMF',  'RPPA_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • KIAA0408 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • PIAS1 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CNMF'.

  • FLJ10357 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SMC5 mutation correlated to 'MRNASEQ_CHIERARCHICAL'.

  • ATOH1 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'MIRSEQ_CNMF'.

  • SYBU mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CPT2 mutation correlated to 'CN_CNMF',  'RPPA_CNMF',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • SCNN1D mutation correlated to 'CN_CNMF'.

  • OLFM3 mutation correlated to 'METHLYATION_CNMF' and 'RPPA_CHIERARCHICAL'.

  • LRRC43 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_CNMF'.

  • TMC2 mutation correlated to 'RPPA_CHIERARCHICAL'.

  • USP30 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF', and 'MIRSEQ_CNMF'.

  • TRIP6 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PBX2 mutation correlated to 'METHLYATION_CNMF'.

  • TNNT3 mutation correlated to 'MIRSEQ_CNMF'.

  • OSTALPHA mutation correlated to 'MRNASEQ_CHIERARCHICAL' and 'MIRSEQ_CNMF'.

  • OXCT2 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • XIRP2 mutation correlated to 'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CREBBP mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CNMF',  'MIRSEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • TJP2 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • PTPN11 mutation correlated to 'CN_CNMF' and 'RPPA_CHIERARCHICAL'.

  • ASCL4 mutation correlated to 'CN_CNMF' and 'MIRSEQ_CNMF'.

  • TESK1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF', and 'MIRSEQ_MATURE_CNMF'.

  • ORC2L mutation correlated to 'RPPA_CHIERARCHICAL' and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • DHX15 mutation correlated to 'CN_CNMF',  'RPPA_CNMF', and 'RPPA_CHIERARCHICAL'.

  • LRRC4 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • FIGNL1 mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • CD6 mutation correlated to 'RPPA_CHIERARCHICAL' and 'MRNASEQ_CHIERARCHICAL'.

  • POGZ mutation correlated to 'CN_CNMF',  'METHLYATION_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CNMF',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_MATURE_CNMF', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • RBM16 mutation correlated to 'CN_CNMF',  'RPPA_CHIERARCHICAL',  'MRNASEQ_CHIERARCHICAL',  'MIRSEQ_CHIERARCHICAL', and 'MIRSEQ_MATURE_CHIERARCHICAL'.

  • FAH mutation correlated to 'RPPA_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 1193 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 4165 significant findings detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
LARP4B 30 (8%) 363 1e-05
(0.000978) 		3e-05
(0.00196) 		0.0219
(0.0888) 		4e-05
(0.00234) 		0.0205
(0.0853) 		0.00052
(0.0109) 		0.00424
(0.0349) 		0.00688
(0.0459) 		0.0129
(0.0653) 		0.00086
(0.0143)
MLL4 45 (11%) 348 1e-05
(0.000978) 		1e-05
(0.000978) 		0.0233
(0.092) 		0.0004
(0.00912) 		1e-05
(0.000978) 		1e-05
(0.000978) 		0.00015
(0.00497) 		0.00067
(0.0125) 		0.0303
(0.107) 		7e-05
(0.00325)
PGM5 39 (10%) 354 1e-05
(0.000978) 		1e-05
(0.000978) 		0.00044
(0.00974) 		1e-05
(0.000978) 		9e-05
(0.00368) 		1e-05
(0.000978) 		1e-05
(0.000978) 		0.00057
(0.0114) 		0.0121
(0.0633) 		9e-05
(0.00368)
MLL2 67 (17%) 326 1e-05
(0.000978) 		1e-05
(0.000978) 		0.00028
(0.00747) 		1e-05
(0.000978) 		1e-05
(0.000978) 		7e-05
(0.00325) 		6e-05
(0.00292) 		0.00011
(0.00414) 		0.00027
(0.00734) 		1e-05
(0.000978)
HLA-A 19 (5%) 374 0.00033
(0.00805) 		0.0494
(0.142) 		0.00621
(0.0434) 		1e-05
(0.000978) 		0.0274
(0.102) 		6e-05
(0.00292) 		0.00435
(0.0354) 		0.00552
(0.0408) 		0.00618
(0.0433) 		2e-05
(0.00161)
HDAC4 26 (7%) 367 1e-05
(0.000978) 		1e-05
(0.000978) 		0.00217
(0.0241) 		1e-05
(0.000978) 		0.00028
(0.00747) 		1e-05
(0.000978) 		0.0174
(0.0775) 		0.00018
(0.00559) 		0.0107
(0.0589) 		4e-05
(0.00234)
CCDC108 26 (7%) 367 5e-05
(0.00258) 		0.00437
(0.0355) 		0.00946
(0.0552) 		0.00145
(0.0193) 		1e-05
(0.000978) 		0.00122
(0.0177) 		1e-05
(0.000978) 		0.00053
(0.0109) 		0.0489
(0.141) 		0.00214
(0.024)
KIAA0195 20 (5%) 373 3e-05
(0.00196) 		1e-05
(0.000978) 		0.00365
(0.0328) 		1e-05
(0.000978) 		0.00025
(0.007) 		1e-05
(0.000978) 		0.00023
(0.00666) 		0.00503
(0.0387) 		0.0377
(0.122) 		1e-05
(0.000978)
ZFHX4 68 (17%) 325 1e-05
(0.000978) 		0.00014
(0.00477) 		0.0142
(0.0688) 		0.00115
(0.0171) 		0.0038
(0.0333) 		0.00026
(0.00718) 		0.0059
(0.0424) 		0.0153
(0.0721) 		0.0378
(0.122) 		0.00972
(0.0559)
FBN3 33 (8%) 360 3e-05
(0.00196) 		0.00104
(0.0161) 		0.0473
(0.138) 		0.00483
(0.0378) 		0.00871
(0.0525) 		1e-05
(0.000978) 		0.00176
(0.0216) 		0.00082
(0.0138) 		0.0422
(0.13) 		0.00136
(0.0187)
ADNP2 19 (5%) 374 0.00065
(0.0123) 		0.00123
(0.0178) 		0.049
(0.142) 		2e-05
(0.00161) 		0.00819
(0.0503) 		0.00129
(0.0181) 		0.00088
(0.0145) 		0.00081
(0.0137) 		0.0173
(0.0772) 		0.00999
(0.0566)
ANK3 47 (12%) 346 1e-05
(0.000978) 		0.0195
(0.0826) 		0.00234
(0.0251) 		0.0104
(0.0578) 		0.00379
(0.0333) 		0.00803
(0.0499) 		3e-05
(0.00196) 		0.0167
(0.0755) 		0.0479
(0.139) 		0.00439
(0.0356)
GTF3C1 35 (9%) 358 1e-05
(0.000978) 		0.00179
(0.0217) 		0.0212
(0.087) 		0.00018
(0.00559) 		5e-05
(0.00258) 		0.00125
(0.0179) 		0.00114
(0.017) 		0.00296
(0.029) 		0.0107
(0.0588) 		0.00016
(0.00522)
MGA 28 (7%) 365 3e-05
(0.00196) 		0.00029
(0.0076) 		0.00169
(0.0211) 		0.00185
(0.0221) 		4e-05
(0.00234) 		0.00614
(0.0431) 		0.00089
(0.0145) 		0.00014
(0.00477) 		0.00043
(0.00957) 		0.0204
(0.0852)
VPS13A 38 (10%) 355 0.00079
(0.0135) 		0.022
(0.0891) 		0.0321
(0.11) 		1e-05
(0.000978) 		0.00014
(0.00477) 		0.00304
(0.0294) 		0.00767
(0.0489) 		0.0298
(0.107) 		0.00212
(0.0239) 		0.0113
(0.0605)
HIVEP1 24 (6%) 369 0.011
(0.0596) 		0.00096
(0.0152) 		0.0293
(0.106) 		0.0228
(0.0908) 		0.00495
(0.0383) 		0.00036
(0.00857) 		0.00024
(0.00678) 		4e-05
(0.00234) 		0.031
(0.108) 		0.00062
(0.012)
CNTLN 36 (9%) 357 0.00325
(0.0307) 		0.0008
(0.0136) 		0.00029
(0.0076) 		5e-05
(0.00258) 		0.00194
(0.0227) 		1e-05
(0.000978) 		0.045
(0.134) 		0.021
(0.0866) 		0.0428
(0.131) 		0.0193
(0.0821)
MAP1A 19 (5%) 374 0.00701
(0.0464) 		0.00066
(0.0124) 		0.0312
(0.109) 		0.00096
(0.0152) 		0.00198
(0.023) 		0.00615
(0.0432) 		0.0101
(0.0568) 		0.0342
(0.115) 		0.0474
(0.139) 		0.00089
(0.0145)
RNF43 45 (11%) 348 1e-05
(0.000978) 		1e-05
(0.000978) 		0.0106
(0.0588) 		4e-05
(0.00234) 		0.00023
(0.00666) 		1e-05
(0.000978) 		1e-05
(0.000978) 		4e-05
(0.00234) 		0.0641
(0.167) 		0.00029
(0.0076)
XYLT2 38 (10%) 355 1e-05
(0.000978) 		1e-05
(0.000978) 		0.00355
(0.0323) 		3e-05
(0.00196) 		0.00295
(0.029) 		2e-05
(0.00161) 		0.0102
(0.0571) 		0.00993
(0.0564) 		0.076
(0.184) 		0.00124
(0.0178)
CBWD1 21 (5%) 372 1e-05
(0.000978) 		3e-05
(0.00196) 		0.0356
(0.118) 		0.00156
(0.02) 		0.00131
(0.0183) 		5e-05
(0.00258) 		0.0105
(0.058) 		0.00287
(0.0286) 		0.345
(0.473) 		0.0384
(0.123)
ZBTB20 37 (9%) 356 1e-05
(0.000978) 		1e-05
(0.000978) 		0.495
(0.602) 		2e-05
(0.00161) 		1e-05
(0.000978) 		1e-05
(0.000978) 		1e-05
(0.000978) 		0.00293
(0.029) 		0.0474
(0.139) 		4e-05
(0.00234)
NFASC 31 (8%) 362 0.00107
(0.0163) 		0.00631
(0.0437) 		0.00133
(0.0184) 		0.00063
(0.0121) 		0.00014
(0.00477) 		0.00228
(0.0247) 		6e-05
(0.00292) 		0.00053
(0.0109) 		0.077
(0.185) 		0.00944
(0.0552)
EIF5B 25 (6%) 368 1e-05
(0.000978) 		0.00026
(0.00718) 		0.0851
(0.197) 		1e-05
(0.000978) 		1e-05
(0.000978) 		0.00026
(0.00718) 		0.00054
(0.011) 		0.00217
(0.0241) 		0.00052
(0.0109) 		0.0059
(0.0424)
JARID2 36 (9%) 357 1e-05
(0.000978) 		0.0001
(0.00389) 		0.0132
(0.0662) 		4e-05
(0.00234) 		1e-05
(0.000978) 		1e-05
(0.000978) 		3e-05
(0.00196) 		0.00033
(0.00805) 		0.174
(0.301) 		0.00012
(0.00438)
CR2 23 (6%) 370 0.0283
(0.104) 		0.131
(0.256) 		0.0268
(0.101) 		0.00087
(0.0144) 		0.00154
(0.02) 		0.00742
(0.0479) 		6e-05
(0.00292) 		0.00607
(0.0429) 		0.0341
(0.114) 		0.00475
(0.0374)
CCDC88A 22 (6%) 371 5e-05
(0.00258) 		0.00277
(0.0281) 		0.0612
(0.162) 		0.00448
(0.036) 		0.00558
(0.0411) 		0.00944
(0.0552) 		1e-05
(0.000978) 		0.00194
(0.0227) 		0.0186
(0.0804) 		0.00431
(0.0353)
PIK3CA 65 (17%) 328 1e-05
(0.000978) 		1e-05
(0.000978) 		0.00017
(0.00544) 		4e-05
(0.00234) 		4e-05
(0.00234) 		0.165
(0.294) 		0.00029
(0.0076) 		0.00033
(0.00805) 		0.00098
(0.0154) 		1e-05
(0.000978)
BTBD7 20 (5%) 373 0.00031
(0.00787) 		4e-05
(0.00234) 		0.048
(0.14) 		0.00035
(0.0084) 		0.00262
(0.027) 		6e-05
(0.00292) 		0.0382
(0.123) 		0.0054
(0.0404) 		0.191
(0.321) 		0.0478
(0.139)
KCNJ10 14 (4%) 379 2e-05
(0.00161) 		0.00015
(0.00497) 		0.339
(0.468) 		1e-05
(0.000978) 		0.00053
(0.0109) 		6e-05
(0.00292) 		0.00305
(0.0294) 		0.00839
(0.0511) 		0.00706
(0.0465) 		0.00121
(0.0176)
HDLBP 31 (8%) 362 0.0312
(0.109) 		0.0363
(0.119) 		0.0262
(0.0997) 		0.102
(0.218) 		0.0156
(0.0729) 		0.0183
(0.0795) 		0.00038
(0.00887) 		0.0344
(0.115) 		0.0439
(0.133) 		0.0101
(0.0568)
PBRM1 26 (7%) 367 0.00089
(0.0145) 		0.00065
(0.0123) 		0.0205
(0.0853) 		0.00015
(0.00497) 		0.00024
(0.00678) 		0.252
(0.383) 		0.0456
(0.136) 		0.0017
(0.0211) 		0.00642
(0.0442) 		0.00226
(0.0246)
C5ORF42 31 (8%) 362 0.00025
(0.007) 		3e-05
(0.00196) 		0.0211
(0.0867) 		1e-05
(0.000978) 		1e-05
(0.000978) 		0.00187
(0.0222) 		0.00706
(0.0465) 		0.00062
(0.012) 		0.59
(0.683) 		0.0045
(0.0361)
RABGAP1 22 (6%) 371 8e-05
(0.00338) 		4e-05
(0.00234) 		0.00779
(0.0492) 		8e-05
(0.00338) 		2e-05
(0.00161) 		1e-05
(0.000978) 		0.00766
(0.0488) 		0.00073
(0.013) 		0.0674
(0.172) 		0.00571
(0.0416)
MLL3 52 (13%) 341 0.00131
(0.0183) 		1e-05
(0.000978) 		0.0633
(0.166) 		0.028
(0.103) 		0.00942
(0.0551) 		0.0119
(0.0626) 		0.00662
(0.0449) 		0.00032
(0.00794) 		0.0234
(0.0921) 		0.0002
(0.00604)
CDC14A 15 (4%) 378 0.00319
(0.0303) 		0.00674
(0.0453) 		0.052
(0.147) 		0.0014
(0.019) 		0.00344
(0.0317) 		0.00013
(0.00462) 		1e-05
(0.000978) 		0.00074
(0.0131) 		0.0198
(0.0834) 		0.0131
(0.0659)
C17ORF57 12 (3%) 381 0.0288
(0.105) 		0.0269
(0.101) 		0.195
(0.326) 		0.00093
(0.0149) 		0.00369
(0.0331) 		0.00125
(0.0179) 		0.00056
(0.0113) 		0.0378
(0.122) 		0.0337
(0.114) 		0.0298
(0.107)
IRS1 21 (5%) 372 1e-05
(0.000978) 		0.0109
(0.0595) 		0.0296
(0.106) 		0.0241
(0.0943) 		0.00661
(0.0449) 		0.00054
(0.011) 		0.00124
(0.0178) 		0.00233
(0.025) 		0.0605
(0.161) 		0.0293
(0.106)
PLEKHA5 19 (5%) 374 0.0004
(0.00912) 		0.00283
(0.0284) 		0.148
(0.275) 		0.0179
(0.0787) 		0.00041
(0.00925) 		0.0269
(0.101) 		0.0148
(0.0705) 		0.00235
(0.0251) 		0.0155
(0.0726) 		0.00078
(0.0134)
EPHA2 27 (7%) 366 1e-05
(0.000978) 		0.00026
(0.00718) 		0.0295
(0.106) 		0.0004
(0.00912) 		0.00659
(0.0448) 		0.00758
(0.0485) 		0.00487
(0.0379) 		0.00117
(0.0173) 		0.152
(0.279) 		0.00023
(0.00666)
MPRIP 17 (4%) 376 2e-05
(0.00161) 		0.00103
(0.016) 		0.014
(0.0681) 		1e-05
(0.000978) 		0.0122
(0.0635) 		2e-05
(0.00161) 		0.00573
(0.0416) 		0.0134
(0.0667) 		0.388
(0.51) 		0.00072
(0.0129)
CCDC80 19 (5%) 374 0.00999
(0.0566) 		0.00228
(0.0247) 		0.431
(0.548) 		0.0163
(0.0744) 		0.00455
(0.0363) 		0.00265
(0.0272) 		0.00799
(0.0497) 		0.03
(0.107) 		0.0362
(0.119) 		0.0139
(0.0678)
TNRC6C 15 (4%) 378 0.00075
(0.0131) 		0.0318
(0.11) 		0.11
(0.23) 		0.0203
(0.085) 		0.00018
(0.00559) 		3e-05
(0.00196) 		0.00115
(0.0171) 		0.00075
(0.0131) 		0.0337
(0.114) 		0.0152
(0.0718)
PSD 18 (5%) 375 0.0371
(0.121) 		0.00023
(0.00666) 		0.289
(0.419) 		0.0461
(0.136) 		0.0032
(0.0303) 		0.0082
(0.0503) 		0.00542
(0.0405) 		0.0015
(0.0197) 		0.0166
(0.075) 		0.0182
(0.0793)
NOS1 31 (8%) 362 2e-05
(0.00161) 		0.00754
(0.0483) 		0.265
(0.395) 		5e-05
(0.00258) 		4e-05
(0.00234) 		0.00432
(0.0353) 		0.00581
(0.042) 		0.00257
(0.0266) 		0.0111
(0.06) 		0.00027
(0.00734)
BTBD12 25 (6%) 368 3e-05
(0.00196) 		0.0011
(0.0166) 		0.557
(0.658) 		9e-05
(0.00368) 		0.00059
(0.0117) 		0.00062
(0.012) 		0.00794
(0.0496) 		0.0354
(0.117) 		0.026
(0.099) 		0.02
(0.0842)
UBXN6 12 (3%) 381 0.0472
(0.138) 		0.00295
(0.029) 		0.0121
(0.0634) 		0.00046
(0.01) 		0.0211
(0.0869) 		0.172
(0.3) 		0.0144
(0.0695) 		0.00507
(0.0387) 		0.00414
(0.0345) 		0.0158
(0.0732)
MCM4 15 (4%) 378 0.00114
(0.017) 		0.00566
(0.0414) 		0.437
(0.554) 		0.00039
(0.00902) 		0.0348
(0.116) 		0.00595
(0.0426) 		0.00598
(0.0427) 		0.00542
(0.0405) 		0.0251
(0.0965) 		0.0353
(0.117)
DIP2C 22 (6%) 371 0.00074
(0.0131) 		0.0249
(0.0963) 		0.118
(0.24) 		2e-05
(0.00161) 		0.0343
(0.115) 		0.0215
(0.0878) 		0.00217
(0.0241) 		0.00508
(0.0388) 		0.00064
(0.0122) 		4e-05
(0.00234)
PTPRJ 28 (7%) 365 0.00386
(0.0335) 		0.00359
(0.0325) 		0.0378
(0.122) 		0.011
(0.0596) 		0.00417
(0.0347) 		0.139
(0.265) 		0.00425
(0.0349) 		0.00305
(0.0294) 		0.00151
(0.0197) 		0.00375
(0.0333)
NYNRIN 17 (4%) 376 0.0131
(0.0659) 		0.0162
(0.074) 		0.0416
(0.128) 		4e-05
(0.00234) 		7e-05
(0.00325) 		0.0143
(0.0692) 		0.00116
(0.0172) 		0.0376
(0.122) 		0.129
(0.254) 		0.0124
(0.0639)
CCDC37 14 (4%) 379 0.00031
(0.00787) 		0.0155
(0.0727) 		0.00341
(0.0315) 		0.00013
(0.00462) 		0.00302
(0.0293) 		0.00287
(0.0286) 		0.0037
(0.0331) 		0.00146
(0.0194) 		0.348
(0.474) 		0.0406
(0.127)
PPL 18 (5%) 375 0.00119
(0.0174) 		0.0669
(0.171) 		0.033
(0.112) 		5e-05
(0.00258) 		0.00079
(0.0135) 		0.0439
(0.133) 		0.00095
(0.0152) 		0.0176
(0.0781) 		8e-05
(0.00338) 		4e-05
(0.00234)
CREBBP 36 (9%) 357 1e-05
(0.000978) 		1e-05
(0.000978) 		0.111
(0.231) 		0.019
(0.0814) 		0.016
(0.0738) 		1e-05
(0.000978) 		0.00108
(0.0164) 		0.00183
(0.022) 		0.00979
(0.0561) 		5e-05
(0.00258)
ARID1A 99 (25%) 294 1e-05
(0.000978) 		1e-05
(0.000978) 		0.101
(0.218) 		0.00337
(0.0313) 		0.00035
(0.0084) 		0.0242
(0.0946) 		0.00078
(0.0134) 		0.0133
(0.0663) 		0.155
(0.282) 		0.00692
(0.046)
HLA-B 28 (7%) 365 1e-05
(0.000978) 		0.00011
(0.00414) 		0.00401
(0.034) 		0.00265
(0.0272) 		0.0034
(0.0315) 		0.00379
(0.0333) 		0.0318
(0.11) 		0.0441
(0.133) 		0.0599
(0.16) 		0.0934
(0.208)
B2M 18 (5%) 375 0.00019
(0.00581) 		0.00106
(0.0163) 		0.377
(0.501) 		0.032
(0.11) 		0.00132
(0.0183) 		0.0184
(0.0799) 		0.0209
(0.0862) 		0.01
(0.0567) 		0.145
(0.271) 		0.0193
(0.0823)
MBD6 24 (6%) 369 0.00189
(0.0223) 		0.0253
(0.0974) 		0.00125
(0.0179) 		0.0001
(0.00389) 		2e-05
(0.00161) 		1e-05
(0.000978) 		0.00572
(0.0416) 		0.0683
(0.173) 		0.122
(0.245) 		0.00434
(0.0354)
C14ORF43 26 (7%) 367 3e-05
(0.00196) 		0.00074
(0.0131) 		0.276
(0.407) 		3e-05
(0.00196) 		0.00264
(0.0272) 		0.0028
(0.0282) 		0.0646
(0.167) 		0.00813
(0.0501) 		0.0354
(0.117) 		0.00064
(0.0122)
GRK4 11 (3%) 382 0.0357
(0.118) 		0.0783
(0.187) 		0.0182
(0.0793) 		1e-05
(0.000978) 		0.00032
(0.00794) 		0.149
(0.276) 		0.0117
(0.0619) 		0.00903
(0.0537) 		0.0324
(0.111) 		0.00161
(0.0205)
FHOD3 30 (8%) 363 0.00097
(0.0153) 		8e-05
(0.00338) 		0.488
(0.597) 		0.0239
(0.0935) 		0.5
(0.606) 		0.0435
(0.132) 		8e-05
(0.00338) 		0.004
(0.034) 		0.00797
(0.0497) 		0.00974
(0.0559)
BCORL1 26 (7%) 367 0.00027
(0.00734) 		0.0403
(0.126) 		0.0109
(0.0595) 		0.00108
(0.0164) 		0.179
(0.308) 		0.00054
(0.011) 		0.167
(0.297) 		0.0368
(0.12) 		0.0497
(0.143) 		0.00214
(0.024)
CR1 30 (8%) 363 0.00354
(0.0323) 		0.00371
(0.0331) 		0.00507
(0.0387) 		0.011
(0.0596) 		0.00228
(0.0247) 		0.00176
(0.0216) 		0.0449
(0.134) 		0.00155
(0.02) 		0.247
(0.379) 		0.165
(0.294)
ALPK2 24 (6%) 369 1e-05
(0.000978) 		0.0005
(0.0106) 		0.319
(0.448) 		0.00021
(0.00623) 		0.00628
(0.0436) 		0.00041
(0.00925) 		0.0231
(0.0913) 		0.00326
(0.0307) 		0.215
(0.346) 		0.00206
(0.0235)
SPG20 22 (6%) 371 0.00198
(0.023) 		0.00239
(0.0253) 		0.196
(0.327) 		0.015
(0.0712) 		0.00311
(0.0298) 		0.0325
(0.111) 		0.00566
(0.0414) 		0.0209
(0.0862) 		0.34
(0.468) 		0.013
(0.0656)
DOCK5 25 (6%) 368 1e-05
(0.000978) 		0.00011
(0.00414) 		0.142
(0.268) 		1e-05
(0.000978) 		0.00184
(0.0221) 		1e-05
(0.000978) 		0.0475
(0.139) 		0.00107
(0.0163) 		0.203
(0.334) 		0.00029
(0.0076)
WDR7 22 (6%) 371 1e-05
(0.000978) 		0.0324
(0.111) 		0.0572
(0.156) 		0.00018
(0.00559) 		0.0258
(0.0985) 		0.0285
(0.104) 		0.0495
(0.142) 		0.168
(0.297) 		0.0312
(0.109) 		0.0325
(0.111)
DIDO1 38 (10%) 355 0.00714
(0.0468) 		0.00324
(0.0306) 		0.439
(0.555) 		3e-05
(0.00196) 		0.0612
(0.162) 		0.00077
(0.0134) 		0.00155
(0.02) 		0.00272
(0.0278) 		0.00433
(0.0353) 		0.0011
(0.0166)
BPTF 30 (8%) 363 0.00103
(0.016) 		0.00208
(0.0237) 		0.233
(0.364) 		0.00011
(0.00414) 		0.00998
(0.0566) 		0.00019
(0.00581) 		0.0319
(0.11) 		0.00235
(0.0251) 		0.146
(0.272) 		0.00065
(0.0123)
CASD1 12 (3%) 381 0.00752
(0.0483) 		0.00021
(0.00623) 		0.142
(0.268) 		0.00069
(0.0127) 		0.00109
(0.0165) 		0.00605
(0.0429) 		0.0294
(0.106) 		0.118
(0.24) 		0.00775
(0.0491) 		0.0107
(0.0589)
ELF3 13 (3%) 380 0.00456
(0.0364) 		0.126
(0.25) 		0.0282
(0.104) 		0.00078
(0.0134) 		0.0304
(0.107) 		0.159
(0.287) 		1e-05
(0.000978) 		0.00273
(0.0278) 		6e-05
(0.00292) 		0.00626
(0.0436)
ZC3H13 31 (8%) 362 2e-05
(0.00161) 		1e-05
(0.000978) 		0.0042
(0.0348) 		5e-05
(0.00258) 		0.00535
(0.0401) 		0.00993
(0.0564) 		0.00404
(0.0341) 		0.0648
(0.168) 		0.424
(0.541) 		0.0265
(0.1)
ARID1B 26 (7%) 367 0.00027
(0.00734) 		0.0316
(0.109) 		0.141
(0.267) 		0.0128
(0.0653) 		0.034
(0.114) 		0.153
(0.28) 		0.01
(0.0566) 		0.00327
(0.0307) 		0.0473
(0.138) 		0.00424
(0.0349)
RIF1 24 (6%) 369 3e-05
(0.00196) 		0.0284
(0.104) 		0.0574
(0.156) 		0.00134
(0.0185) 		0.0179
(0.0787) 		0.00073
(0.013) 		0.00042
(0.0094) 		0.00422
(0.0349) 		0.056
(0.154) 		0.0101
(0.0569)
YLPM1 24 (6%) 369 1e-05
(0.000978) 		0.00718
(0.0469) 		0.0678
(0.172) 		0.00045
(0.00985) 		0.0276
(0.102) 		0.0339
(0.114) 		0.00551
(0.0408) 		0.0413
(0.128) 		0.0594
(0.159) 		0.00711
(0.0466)
ATM 38 (10%) 355 0.00903
(0.0537) 		0.00491
(0.0381) 		0.28
(0.411) 		0.0141
(0.0685) 		0.00292
(0.029) 		0.0179
(0.0787) 		0.00186
(0.0221) 		0.00319
(0.0303) 		0.88
(0.92) 		0.0147
(0.0702)
SH2B1 11 (3%) 382 0.00113
(0.0169) 		0.0191
(0.0814) 		0.113
(0.233) 		0.00169
(0.0211) 		0.00077
(0.0134) 		0.0406
(0.127) 		0.00296
(0.029) 		0.597
(0.69) 		0.0356
(0.118) 		0.00515
(0.0393)
CROT 15 (4%) 378 0.00316
(0.0301) 		0.0412
(0.128) 		0.102
(0.219) 		0.00011
(0.00414) 		0.00056
(0.0113) 		0.00985
(0.0562) 		0.00833
(0.0509) 		0.00937
(0.055) 		0.224
(0.355) 		0.00246
(0.0259)
EXPH5 15 (4%) 378 0.00769
(0.0489) 		0.0149
(0.0709) 		0.079
(0.188) 		1e-05
(0.000978) 		0.0194
(0.0825) 		0.219
(0.35) 		0.00061
(0.0119) 		0.0348
(0.116) 		0.0149
(0.071) 		0.00024
(0.00678)
MEGF8 30 (8%) 363 0.00042
(0.0094) 		8e-05
(0.00338) 		0.0645
(0.167) 		0.00942
(0.0551) 		0.0325
(0.111) 		0.00209
(0.0237) 		0.00332
(0.0309) 		0.0193
(0.0821) 		0.057
(0.155) 		0.049
(0.142)
BRCA2 33 (8%) 360 0.0064
(0.0441) 		0.00141
(0.0191) 		0.079
(0.188) 		0.00432
(0.0353) 		0.00131
(0.0183) 		0.00552
(0.0408) 		0.00039
(0.00902) 		0.00106
(0.0163) 		0.0645
(0.167) 		0.0214
(0.0875)
ARHGEF11 21 (5%) 372 0.00507
(0.0387) 		0.00063
(0.0121) 		0.111
(0.231) 		0.00588
(0.0424) 		0.00177
(0.0216) 		0.0117
(0.0619) 		0.0193
(0.0823) 		0.0158
(0.0732) 		0.0819
(0.192) 		0.0181
(0.0792)
DDX50 12 (3%) 381 0.00023
(0.00666) 		0.00103
(0.016) 		0.421
(0.538) 		0.00234
(0.0251) 		0.0276
(0.102) 		0.0088
(0.0529) 		0.0438
(0.132) 		0.027
(0.101) 		0.222
(0.354) 		0.00806
(0.0499)
RHOBTB2 20 (5%) 373 0.00135
(0.0186) 		0.00806
(0.0499) 		0.0676
(0.172) 		0.00982
(0.0561) 		0.0549
(0.152) 		0.00376
(0.0333) 		0.0145
(0.0697) 		0.0207
(0.0858) 		0.00719
(0.0469) 		0.00593
(0.0425)
CEP250 21 (5%) 372 0.00184
(0.0221) 		0.00029
(0.0076) 		0.00118
(0.0174) 		1e-05
(0.000978) 		0.0169
(0.0758) 		3e-05
(0.00196) 		0.194
(0.325) 		0.00281
(0.0283) 		0.319
(0.448) 		0.045
(0.134)
WHSC1L1 18 (5%) 375 0.0281
(0.104) 		0.0141
(0.0685) 		0.256
(0.386) 		0.00071
(0.0128) 		0.035
(0.116) 		0.00737
(0.0477) 		0.00445
(0.0358) 		0.0246
(0.0954) 		0.155
(0.282) 		0.0259
(0.0988)
KIAA0427 16 (4%) 377 0.00012
(0.00438) 		0.0304
(0.107) 		0.074
(0.181) 		1e-05
(0.000978) 		0.349
(0.475) 		0.016
(0.0736) 		0.00032
(0.00794) 		0.0236
(0.0928) 		0.0324
(0.111) 		0.0253
(0.0974)
PCLO 80 (20%) 313 0.227
(0.359) 		2e-05
(0.00161) 		0.0176
(0.0778) 		3e-05
(0.00196) 		0.185
(0.315) 		0.00698
(0.0463) 		0.00066
(0.0124) 		0.00473
(0.0373) 		0.014
(0.0683) 		0.00088
(0.0145)
ZCCHC6 12 (3%) 381 0.00813
(0.0501) 		0.0092
(0.0544) 		0.222
(0.354) 		0.00104
(0.0161) 		0.104
(0.221) 		0.0236
(0.0927) 		0.0386
(0.123) 		0.00485
(0.0379) 		0.0125
(0.0643) 		0.0403
(0.127)
SFRS18 15 (4%) 378 0.00021
(0.00623) 		0.0377
(0.122) 		0.0322
(0.111) 		0.00012
(0.00438) 		0.0873
(0.2) 		0.00425
(0.0349) 		0.00129
(0.0181) 		0.00898
(0.0535) 		0.0491
(0.142) 		0.102
(0.22)
KIDINS220 18 (5%) 375 0.0368
(0.12) 		0.0636
(0.166) 		0.0427
(0.13) 		0.0109
(0.0594) 		0.342
(0.47) 		0.0249
(0.0963) 		0.0131
(0.0659) 		0.0238
(0.0934) 		0.0129
(0.0654) 		0.00121
(0.0176)
BUB1B 12 (3%) 381 0.00849
(0.0516) 		0.0244
(0.0949) 		0.632
(0.718) 		0.0294
(0.106) 		0.0294
(0.106) 		0.00402
(0.034) 		0.00675
(0.0453) 		0.0379
(0.122) 		0.223
(0.354) 		0.0262
(0.0996)
RERE 24 (6%) 369 5e-05
(0.00258) 		0.00025
(0.007) 		0.139
(0.265) 		0.00697
(0.0462) 		8e-05
(0.00338) 		0.00163
(0.0207) 		0.00133
(0.0184) 		0.0689
(0.174) 		0.00279
(0.0282) 		0.00215
(0.0241)
SASH3 8 (2%) 385 0.00491
(0.0381) 		0.0156
(0.0729) 		0.244
(0.375) 		0.00296
(0.029) 		0.0409
(0.127) 		0.0118
(0.0624) 		0.0192
(0.0817) 		0.0318
(0.11) 		0.0899
(0.203) 		0.0299
(0.107)
MEPCE 8 (2%) 385 0.00479
(0.0376) 		0.0205
(0.0854) 		0.145
(0.272) 		5e-05
(0.00258) 		0.00178
(0.0217) 		8e-05
(0.00338) 		0.0295
(0.106) 		0.0327
(0.112) 		0.0457
(0.136) 		0.088
(0.201)
FLJ10357 20 (5%) 373 1e-05
(0.000978) 		0.00011
(0.00414) 		0.125
(0.249) 		0.00046
(0.01) 		0.00079
(0.0135) 		1e-05
(0.000978) 		0.0415
(0.128) 		0.00413
(0.0345) 		0.0512
(0.146) 		0.0239
(0.0935)
XIRP2 56 (14%) 337 0.0903
(0.203) 		0.00504
(0.0387) 		0.058
(0.157) 		0.00033
(0.00805) 		0.00096
(0.0152) 		0.00654
(0.0446) 		0.0296
(0.106) 		0.0422
(0.13) 		0.00077
(0.0134) 		0.0408
(0.127)
TP53 188 (48%) 205 1e-05
(0.000978) 		1e-05
(0.000978) 		0.636
(0.72) 		0.522
(0.626) 		1e-05
(0.000978) 		0.00031
(0.00787) 		1e-05
(0.000978) 		1e-05
(0.000978) 		0.163
(0.292) 		5e-05
(0.00258)
CDH1 32 (8%) 361 0.00012
(0.00438) 		0.00539
(0.0404) 		0.0767
(0.185) 		0.122
(0.245) 		0.00038
(0.00887) 		8e-05
(0.00338) 		0.0222
(0.0898) 		9e-05
(0.00368) 		0.137
(0.263) 		0.0468
(0.138)
HOXD8 13 (3%) 380 0.00148
(0.0195) 		0.00675
(0.0453) 		0.212
(0.344) 		0.00808
(0.05) 		0.00818
(0.0503) 		0.14
(0.266) 		0.0051
(0.0389) 		0.0911
(0.205) 		0.0289
(0.105) 		0.00635
(0.0438)
MVK 15 (4%) 378 0.00759
(0.0486) 		0.00014
(0.00477) 		0.0204
(0.0851) 		1e-05
(0.000978) 		0.00918
(0.0544) 		0.00614
(0.0431) 		0.0409
(0.127) 		0.209
(0.341) 		1
(1.00) 		0.332
(0.462)
FRMD4A 21 (5%) 372 0.0166
(0.075) 		3e-05
(0.00196) 		0.305
(0.436) 		0.0272
(0.102) 		0.00387
(0.0335) 		0.00128
(0.0181) 		0.0266
(0.1) 		0.0607
(0.161) 		0.0644
(0.167) 		0.0326
(0.112)
OSBP2 15 (4%) 378 0.011
(0.0596) 		0.00123
(0.0178) 		0.466
(0.578) 		0.00413
(0.0345) 		0.0735
(0.181) 		0.0135
(0.0667) 		0.00091
(0.0147) 		0.00937
(0.055) 		0.132
(0.256) 		0.0258
(0.0985)
BCOR 28 (7%) 365 1e-05
(0.000978) 		0.0012
(0.0175) 		0.00915
(0.0542) 		0.00017
(0.00544) 		0.0205
(0.0855) 		0.175
(0.303) 		0.00357
(0.0324) 		0.0213
(0.0872) 		0.245
(0.376) 		0.122
(0.245)
INPPL1 24 (6%) 369 3e-05
(0.00196) 		0.00069
(0.0127) 		0.058
(0.157) 		0.00129
(0.0181) 		0.00123
(0.0178) 		0.0207
(0.0857) 		0.00018
(0.00559) 		0.0419
(0.129) 		0.447
(0.563) 		0.296
(0.426)
RNF128 14 (4%) 379 0.0016
(0.0204) 		0.0168
(0.0756) 		0.131
(0.256) 		0.0128
(0.0651) 		0.0859
(0.198) 		0.129
(0.254) 		0.0489
(0.141) 		0.0139
(0.0678) 		0.0207
(0.0857) 		0.0271
(0.101)
KIAA0664 23 (6%) 370 0.00035
(0.0084) 		0.00335
(0.0311) 		0.103
(0.221) 		1e-05
(0.000978) 		0.107
(0.226) 		0.129
(0.255) 		0.00389
(0.0336) 		0.032
(0.11) 		0.0118
(0.0624) 		0.0112
(0.0601)
CELSR1 37 (9%) 356 1e-05
(0.000978) 		0.00037
(0.00872) 		0.151
(0.278) 		0.0104
(0.0578) 		0.0154
(0.0725) 		0.00213
(0.024) 		0.0447
(0.134) 		0.172
(0.3) 		0.0438
(0.132) 		0.198
(0.328)
GYLTL1B 17 (4%) 376 1e-05
(0.000978) 		0.0042
(0.0348) 		0.625
(0.713) 		0.00845
(0.0515) 		0.0124
(0.0638) 		0.0226
(0.0904) 		0.00184
(0.0221) 		0.556
(0.656) 		0.651
(0.732) 		0.0487
(0.141)
ATP6V1B1 21 (5%) 372 4e-05
(0.00234) 		0.00075
(0.0131) 		0.063
(0.165) 		0.0509
(0.145) 		0.00676
(0.0454) 		0.0142
(0.0687) 		0.00059
(0.0117) 		0.0625
(0.164) 		0.0069
(0.046) 		0.0329
(0.112)
BTBD11 26 (7%) 367 0.00076
(0.0133) 		0.00014
(0.00477) 		0.169
(0.298) 		0.177
(0.305) 		0.0111
(0.0597) 		0.0192
(0.0819) 		0.00061
(0.0119) 		0.00019
(0.00581) 		0.113
(0.233) 		0.00078
(0.0134)
SCLT1 17 (4%) 376 0.00505
(0.0387) 		0.0135
(0.0667) 		0.376
(0.5) 		0.0197
(0.0831) 		0.0494
(0.142) 		0.0877
(0.2) 		0.0249
(0.0961) 		0.127
(0.251) 		0.037
(0.121) 		0.0341
(0.115)
RB1CC1 15 (4%) 378 0.0165
(0.075) 		0.0053
(0.0399) 		0.0924
(0.207) 		0.00742
(0.0479) 		0.00343
(0.0316) 		0.00235
(0.0251) 		0.0599
(0.16) 		0.375
(0.499) 		0.0425
(0.13) 		0.0128
(0.0652)
SVIL 30 (8%) 363 1e-05
(0.000978) 		0.00012
(0.00438) 		0.12
(0.243) 		0.00145
(0.0193) 		0.00414
(0.0345) 		0.00149
(0.0196) 		0.125
(0.249) 		0.0995
(0.216) 		0.0428
(0.131) 		0.00657
(0.0447)
ZNF43 25 (6%) 368 0.00402
(0.034) 		0.215
(0.347) 		0.64
(0.723) 		0.00998
(0.0566) 		0.0108
(0.059) 		0.00444
(0.0358) 		0.0146
(0.0701) 		0.00057
(0.0114) 		0.00523
(0.0396) 		0.151
(0.278)
RBM6 23 (6%) 370 1e-05
(0.000978) 		0.013
(0.0656) 		0.29
(0.42) 		0.00097
(0.0153) 		0.00739
(0.0478) 		0.00526
(0.0397) 		0.0151
(0.0715) 		0.0118
(0.0624) 		0.0942
(0.209) 		0.343
(0.471)
KIF21A 18 (5%) 375 0.00151
(0.0197) 		0.00032
(0.00794) 		0.0163
(0.0744) 		0.00222
(0.0244) 		0.0414
(0.128) 		0.0375
(0.122) 		0.117
(0.239) 		0.044
(0.133) 		0.792
(0.85) 		0.0513
(0.146)
ARID2 29 (7%) 364 0.0007
(0.0127) 		0.0258
(0.0985) 		0.393
(0.514) 		0.00155
(0.02) 		0.00785
(0.0493) 		0.358
(0.484) 		0.00016
(0.00522) 		0.001
(0.0157) 		0.256
(0.386) 		0.0057
(0.0416)
ZFHX3 38 (10%) 355 0.00049
(0.0105) 		0.00076
(0.0133) 		0.035
(0.116) 		5e-05
(0.00258) 		0.0001
(0.00389) 		0.00166
(0.0208) 		0.00037
(0.00872) 		0.13
(0.255) 		0.248
(0.379) 		0.123
(0.247)
ASB11 10 (3%) 383 0.00093
(0.0149) 		0.0621
(0.164) 		0.656
(0.736) 		0.0131
(0.0659) 		0.0367
(0.12) 		0.041
(0.127) 		0.00161
(0.0205) 		0.0867
(0.199) 		0.0196
(0.0829) 		0.0147
(0.0703)
VPS13B 49 (12%) 344 6e-05
(0.00292) 		0.00645
(0.0442) 		0.128
(0.252) 		0.00953
(0.0554) 		0.00041
(0.00925) 		0.0273
(0.102) 		0.00345
(0.0318) 		0.0535
(0.15) 		0.112
(0.232) 		0.00643
(0.0442)
BCL9L 26 (7%) 367 0.0001
(0.00389) 		0.00202
(0.0232) 		0.00155
(0.02) 		5e-05
(0.00258) 		0.00603
(0.0428) 		0.00044
(0.00974) 		0.0588
(0.158) 		0.00817
(0.0502) 		0.0883
(0.201) 		0.156
(0.283)
NCAPD3 19 (5%) 374 0.0094
(0.0551) 		0.0245
(0.0951) 		0.769
(0.831) 		0.0185
(0.0799) 		0.134
(0.26) 		0.00523
(0.0396) 		0.0254
(0.0974) 		0.00651
(0.0445) 		0.505
(0.612) 		0.0471
(0.138)
ATP6V1C2 15 (4%) 378 0.00071
(0.0128) 		0.0125
(0.0643) 		0.13
(0.255) 		0.00428
(0.0351) 		0.045
(0.134) 		0.158
(0.285) 		0.059
(0.159) 		0.0182
(0.0794) 		0.0447
(0.134) 		0.00572
(0.0416)
MYEOV 9 (2%) 384 0.00305
(0.0294) 		0.0179
(0.0787) 		0.387
(0.509) 		0.00031
(0.00787) 		0.0061
(0.043) 		0.00145
(0.0193) 		0.0165
(0.075) 		0.0284
(0.104) 		1
(1.00) 		0.0506
(0.144)
ZNF878 13 (3%) 380 0.00403
(0.034) 		0.0147
(0.0703) 		0.0724
(0.179) 		0.00015
(0.00497) 		1e-05
(0.000978) 		0.00107
(0.0163) 		0.00224
(0.0245) 		0.291
(0.421) 		0.0256
(0.0979) 		0.139
(0.265)
COL12A1 53 (13%) 340 0.00273
(0.0278) 		0.00189
(0.0223) 		0.019
(0.0814) 		0.0392
(0.124) 		0.0631
(0.165) 		0.113
(0.233) 		0.00282
(0.0283) 		0.0866
(0.199) 		0.0193
(0.0823) 		0.0062
(0.0434)
TBC1D10C 9 (2%) 384 0.00296
(0.029) 		0.00821
(0.0503) 		0.182
(0.312) 		0.00175
(0.0215) 		0.00446
(0.0359) 		5e-05
(0.00258) 		0.408
(0.526) 		0.028
(0.103) 		1
(1.00) 		0.0313
(0.109)
CNNM1 12 (3%) 381 0.00239
(0.0253) 		0.0582
(0.157) 		0.419
(0.536) 		0.00217
(0.0241) 		0.0381
(0.123) 		0.0183
(0.0796) 		0.00454
(0.0363) 		0.0386
(0.123) 		0.0634
(0.166) 		0.00017
(0.00544)
PRPF40B 17 (4%) 376 0.00021
(0.00623) 		0.0157
(0.0729) 		0.108
(0.227) 		0.0102
(0.0571) 		0.00187
(0.0222) 		0.00129
(0.0181) 		0.00839
(0.0511) 		0.417
(0.534) 		0.0825
(0.193) 		0.0213
(0.0872)
FAM83E 13 (3%) 380 0.00775
(0.0491) 		0.0131
(0.0659) 		0.766
(0.83) 		0.00039
(0.00902) 		0.00381
(0.0333) 		0.0186
(0.0802) 		0.00557
(0.0411) 		0.131
(0.256) 		0.068
(0.173) 		0.0018
(0.0218)
PCGF3 7 (2%) 386 0.0121
(0.0632) 		0.00226
(0.0246) 		0.288
(0.418) 		0.00049
(0.0105) 		0.0233
(0.0919) 		0.0007
(0.0127) 		0.00071
(0.0128) 		0.0757
(0.184) 		0.437
(0.553) 		0.017
(0.0763)
MAP9 13 (3%) 380 0.0471
(0.138) 		0.00255
(0.0265) 		0.36
(0.486) 		0.00948
(0.0552) 		0.0216
(0.0882) 		0.00031
(0.00787) 		0.55
(0.651) 		0.00272
(0.0278) 		1
(1.00) 		0.0144
(0.0695)
SMTN 20 (5%) 373 0.00294
(0.029) 		0.0655
(0.169) 		1
(1.00) 		0.0376
(0.122) 		0.016
(0.0738) 		0.00028
(0.00747) 		0.0103
(0.0574) 		0.049
(0.142) 		0.155
(0.282) 		0.0206
(0.0856)
EDNRB 28 (7%) 365 0.0973
(0.212) 		8e-05
(0.00338) 		0.049
(0.142) 		1e-05
(0.000978) 		0.0621
(0.164) 		0.0181
(0.0791) 		0.0397
(0.125) 		0.0371
(0.121) 		0.067
(0.171) 		0.0112
(0.0601)
AKAP13 32 (8%) 361 0.171
(0.3) 		0.00856
(0.0519) 		0.114
(0.235) 		0.00056
(0.0113) 		0.00041
(0.00925) 		0.0515
(0.146) 		0.00011
(0.00414) 		0.00982
(0.0561) 		0.0025
(0.0262) 		0.0253
(0.0972)
FLNB 28 (7%) 365 0.00016
(0.00522) 		0.00126
(0.018) 		0.283
(0.414) 		0.0119
(0.0626) 		0.00887
(0.0532) 		0.0023
(0.0248) 		0.153
(0.28) 		0.00328
(0.0307) 		0.662
(0.741) 		0.0234
(0.0923)
ZNF292 29 (7%) 364 2e-05
(0.00161) 		0.00021
(0.00623) 		0.182
(0.312) 		1e-05
(0.000978) 		1e-05
(0.000978) 		0.00297
(0.0291) 		0.0889
(0.202) 		0.0279
(0.103) 		0.0789
(0.188) 		0.0169
(0.076)
ALDH2 13 (3%) 380 0.00033
(0.00805) 		0.00674
(0.0453) 		0.0725
(0.179) 		0.00107
(0.0163) 		0.0195
(0.0828) 		0.0003
(0.00776) 		0.0156
(0.0728) 		0.0209
(0.0862) 		0.237
(0.368) 		0.0895
(0.202)
TNK2 18 (5%) 375 0.00118
(0.0174) 		0.00023
(0.00666) 		0.0405
(0.127) 		0.0563
(0.155) 		0.032
(0.11) 		0.00152
(0.0198) 		0.31
(0.44) 		0.148
(0.275) 		0.028
(0.103) 		0.00896
(0.0534)
LRP12 30 (8%) 363 0.0002
(0.00604) 		0.141
(0.268) 		0.0439
(0.133) 		0.00119
(0.0174) 		0.498
(0.605) 		0.00876
(0.0528) 		0.00061
(0.0119) 		0.0419
(0.129) 		0.151
(0.278) 		0.0022
(0.0243)
KIF13A 19 (5%) 374 1e-05
(0.000978) 		0.00074
(0.0131) 		0.543
(0.645) 		3e-05
(0.00196) 		2e-05
(0.00161) 		0.00552
(0.0408) 		0.0308
(0.108) 		0.0705
(0.176) 		0.033
(0.112) 		0.0956
(0.21)
EPHB6 17 (4%) 376 0.0134
(0.0666) 		0.00552
(0.0408) 		0.0375
(0.122) 		0.00079
(0.0135) 		3e-05
(0.00196) 		0.00064
(0.0122) 		0.223
(0.354) 		0.077
(0.185) 		0.0365
(0.12) 		0.0598
(0.16)
PTPN13 29 (7%) 364 0.0246
(0.0954) 		0.0101
(0.0568) 		0.0336
(0.114) 		0.00379
(0.0333) 		0.082
(0.192) 		0.1
(0.217) 		0.00233
(0.025) 		0.0821
(0.192) 		0.00053
(0.0109) 		0.00011
(0.00414)
UVRAG 12 (3%) 381 0.00108
(0.0164) 		0.273
(0.404) 		0.019
(0.0814) 		0.00253
(0.0264) 		0.0265
(0.1) 		0.578
(0.675) 		7e-05
(0.00325) 		0.0263
(0.0999) 		0.107
(0.225) 		0.0253
(0.0974)
ZMYND8 19 (5%) 374 0.00017
(0.00544) 		0.00013
(0.00462) 		0.132
(0.257) 		0.00031
(0.00787) 		0.00199
(0.023) 		0.0635
(0.166) 		8e-05
(0.00338) 		0.00881
(0.0529) 		0.108
(0.226) 		0.0045
(0.0361)
KIRREL2 16 (4%) 377 0.00359
(0.0325) 		0.00079
(0.0135) 		0.13
(0.255) 		0.00165
(0.0207) 		0.0207
(0.0857) 		0.00064
(0.0122) 		0.00751
(0.0482) 		0.114
(0.234) 		0.123
(0.246) 		0.00392
(0.0336)
EPB41 13 (3%) 380 0.0037
(0.0331) 		0.0358
(0.118) 		0.827
(0.878) 		0.00028
(0.00747) 		0.0122
(0.0634) 		0.00527
(0.0397) 		0.0179
(0.0787) 		0.0432
(0.131) 		0.633
(0.718) 		0.299
(0.43)
INPP5F 15 (4%) 378 5e-05
(0.00258) 		0.237
(0.368) 		0.0429
(0.131) 		0.00019
(0.00581) 		0.0036
(0.0325) 		0.0142
(0.0688) 		1e-05
(0.000978) 		0.0648
(0.168) 		0.0937
(0.208) 		0.0254
(0.0975)
EFHA1 14 (4%) 379 0.00142
(0.0192) 		0.00524
(0.0396) 		0.0447
(0.134) 		0.0131
(0.0658) 		0.00327
(0.0307) 		0.0333
(0.113) 		0.0262
(0.0996) 		0.318
(0.447) 		0.217
(0.349) 		0.0529
(0.149)
TRIOBP 30 (8%) 363 0.00054
(0.011) 		0.0406
(0.127) 		0.345
(0.472) 		0.0118
(0.0624) 		0.272
(0.402) 		0.0497
(0.143) 		0.0259
(0.0989) 		0.435
(0.552) 		0.0102
(0.0572) 		0.00221
(0.0243)
RIMKLB 11 (3%) 382 0.00239
(0.0253) 		0.00435
(0.0354) 		0.115
(0.236) 		0.00052
(0.0109) 		0.00137
(0.0187) 		0.0449
(0.134) 		0.00532
(0.04) 		0.597
(0.689) 		0.0226
(0.0905) 		0.195
(0.326)
F8 30 (8%) 363 0.00831
(0.0508) 		0.306
(0.436) 		0.00608
(0.0429) 		3e-05
(0.00196) 		0.0012
(0.0175) 		0.00314
(0.0301) 		0.00024
(0.00678) 		0.00318
(0.0303) 		0.0769
(0.185) 		0.0847
(0.197)
WDR90 20 (5%) 373 0.0563
(0.155) 		0.0006
(0.0119) 		0.195
(0.326) 		0.0278
(0.103) 		0.00674
(0.0453) 		0.00089
(0.0145) 		0.0184
(0.0798) 		0.00416
(0.0346) 		0.193
(0.324) 		0.0169
(0.076)
NARG2 13 (3%) 380 0.0279
(0.103) 		0.00177
(0.0216) 		0.093
(0.207) 		0.0009
(0.0146) 		0.00113
(0.0169) 		0.0188
(0.0809) 		0.167
(0.297) 		0.0156
(0.0729) 		0.606
(0.697) 		0.013
(0.0656)
ABCA5 21 (5%) 372 0.00709
(0.0466) 		0.0019
(0.0224) 		0.337
(0.466) 		2e-05
(0.00161) 		0.031
(0.108) 		0.00759
(0.0486) 		0.00112
(0.0168) 		0.0162
(0.0741) 		0.112
(0.232) 		0.284
(0.415)
EXO1 17 (4%) 376 0.00523
(0.0396) 		0.00032
(0.00794) 		0.0853
(0.197) 		2e-05
(0.00161) 		0.0111
(0.06) 		0.0142
(0.0688) 		0.0288
(0.105) 		0.00599
(0.0427) 		0.129
(0.254) 		0.0605
(0.161)
PTPN23 21 (5%) 372 3e-05
(0.00196) 		0.00067
(0.0125) 		0.169
(0.298) 		0.201
(0.332) 		0.00068
(0.0126) 		0.00297
(0.0291) 		0.00175
(0.0215) 		0.0086
(0.0521) 		0.433
(0.55) 		0.00712
(0.0467)
IBTK 19 (5%) 374 7e-05
(0.00325) 		0.0544
(0.151) 		0.173
(0.301) 		0.00375
(0.0333) 		0.00159
(0.0203) 		0.0221
(0.0894) 		0.00224
(0.0245) 		0.0891
(0.202) 		0.0156
(0.0729) 		0.0089
(0.0533)
ACACB 32 (8%) 361 0.00058
(0.0116) 		0.00583
(0.0421) 		0.0431
(0.131) 		1e-05
(0.000978) 		0.00303
(0.0294) 		0.00404
(0.0341) 		0.00159
(0.0203) 		0.0571
(0.156) 		0.0686
(0.174) 		0.339
(0.467)
PCDH19 26 (7%) 367 2e-05
(0.00161) 		0.00123
(0.0178) 		0.374
(0.498) 		0.0155
(0.0727) 		0.0004
(0.00912) 		0.0386
(0.123) 		0.00412
(0.0345) 		0.0237
(0.0931) 		0.283
(0.414) 		0.131
(0.256)
KCNH3 17 (4%) 376 0.00137
(0.0187) 		0.00683
(0.0457) 		0.202
(0.333) 		0.00077
(0.0134) 		0.0398
(0.126) 		0.00723
(0.0472) 		0.479
(0.59) 		0.417
(0.534) 		0.0182
(0.0793) 		0.035
(0.117)
THBS3 10 (3%) 383 0.289
(0.419) 		0.00913
(0.0542) 		0.246
(0.378) 		0.00449
(0.036) 		0.00208
(0.0237) 		0.0307
(0.108) 		0.00324
(0.0306) 		0.0891
(0.202) 		0.0228
(0.0908) 		0.0426
(0.13)
WSB2 9 (2%) 384 0.0117
(0.0619) 		0.0502
(0.144) 		0.0165
(0.075) 		0.00018
(0.00559) 		0.00743
(0.0479) 		0.0912
(0.205) 		0.00931
(0.0547) 		0.0967
(0.212) 		0.008
(0.0497) 		0.0244
(0.0949)
GNAS 34 (9%) 359 0.0196
(0.0829) 		0.0161
(0.0739) 		0.145
(0.272) 		0.0302
(0.107) 		0.075
(0.183) 		0.00106
(0.0163) 		0.00143
(0.0192) 		0.0039
(0.0336) 		0.0442
(0.133) 		0.203
(0.335)
P2RY12 9 (2%) 384 0.0482
(0.14) 		0.00626
(0.0436) 		0.183
(0.313) 		0.00185
(0.0221) 		0.00542
(0.0405) 		0.467
(0.579) 		0.0085
(0.0516) 		0.0282
(0.104) 		0.0572
(0.156) 		0.0377
(0.122)
POGZ 24 (6%) 369 0.00172
(0.0213) 		0.00016
(0.00522) 		0.61
(0.701) 		0.00014
(0.00477) 		0.0379
(0.122) 		0.031
(0.108) 		0.0736
(0.181) 		0.168
(0.298) 		0.0302
(0.107) 		0.00103
(0.016)
KRAS 37 (9%) 356 0.00159
(0.0203) 		0.0015
(0.0197) 		0.672
(0.75) 		0.00452
(0.0362) 		0.00015
(0.00497) 		0.00029
(0.0076) 		0.00285
(0.0285) 		0.0852
(0.197) 		0.0518
(0.147) 		0.417
(0.534)
C7ORF50 12 (3%) 381 0.00084
(0.0141) 		0.0001
(0.00389) 		0.405
(0.523) 		0.00784
(0.0493) 		0.341
(0.468) 		0.0231
(0.0913) 		0.265
(0.396) 		0.318
(0.447) 		0.0316
(0.11) 		0.00963
(0.0556)
GNG12 12 (3%) 381 0.00041
(0.00925) 		0.0769
(0.185) 		0.156
(0.283) 		0.013
(0.0656) 		0.00648
(0.0444) 		0.0594
(0.159) 		0.00019
(0.00581) 		0.00525
(0.0396) 		0.0362
(0.119) 		0.1
(0.217)
FBXW7 32 (8%) 361 1e-05
(0.000978) 		0.00185
(0.0221) 		0.401
(0.52) 		0.0152
(0.0718) 		0.00058
(0.0116) 		0.00506
(0.0387) 		0.294
(0.423) 		0.794
(0.851) 		0.0151
(0.0717) 		0.152
(0.279)
DDX17 15 (4%) 378 0.0037
(0.0331) 		0.0036
(0.0325) 		0.107
(0.226) 		0.033
(0.112) 		0.137
(0.262) 		0.0003
(0.00776) 		0.0361
(0.119) 		0.0359
(0.118) 		0.386
(0.509) 		0.239
(0.371)
ZBTB7C 17 (4%) 376 5e-05
(0.00258) 		1e-05
(0.000978) 		0.0758
(0.184) 		0.00384
(0.0335) 		0.0727
(0.179) 		0.00051
(0.0108) 		0.0195
(0.0827) 		0.105
(0.223) 		0.0947
(0.209) 		0.00038
(0.00887)
CTNND1 24 (6%) 369 7e-05
(0.00325) 		0.00063
(0.0121) 		0.182
(0.311) 		0.00613
(0.0431) 		0.00242
(0.0256) 		0.00892
(0.0533) 		0.12
(0.242) 		0.0162
(0.074) 		0.406
(0.524) 		0.184
(0.314)
PAX6 20 (5%) 373 0.13
(0.255) 		0.0117
(0.0619) 		0.152
(0.278) 		0.00049
(0.0105) 		0.00199
(0.023) 		0.00033
(0.00805) 		0.00517
(0.0393) 		0.0384
(0.123) 		0.548
(0.649) 		0.0816
(0.192)
CIC 47 (12%) 346 0.00121
(0.0176) 		0.0293
(0.106) 		0.378
(0.502) 		0.0014
(0.019) 		0.0231
(0.0913) 		0.0108
(0.0592) 		0.245
(0.377) 		0.196
(0.326) 		0.803
(0.859) 		0.0348
(0.116)
PRRG1 10 (3%) 383 0.00144
(0.0193) 		0.0197
(0.0831) 		0.0161
(0.0739) 		0.00322
(0.0305) 		0.0616
(0.163) 		0.008
(0.0497) 		0.00471
(0.0372) 		0.0892
(0.202) 		0.434
(0.551) 		0.114
(0.235)
KIAA1967 22 (6%) 371 3e-05
(0.00196) 		3e-05
(0.00196) 		0.0729
(0.179) 		0.00328
(0.0307) 		3e-05
(0.00196) 		0.00014
(0.00477) 		0.0158
(0.0733) 		0.0519
(0.147) 		0.178
(0.307) 		0.303
(0.433)
KIAA1267 19 (5%) 374 1e-05
(0.000978) 		0.0755
(0.184) 		0.115
(0.236) 		0.00065
(0.0123) 		0.00126
(0.018) 		5e-05
(0.00258) 		0.0101
(0.0568) 		0.0389
(0.124) 		0.936
(0.967) 		0.243
(0.375)
IWS1 14 (4%) 379 0.0332
(0.113) 		0.0322
(0.111) 		0.0646
(0.167) 		0.00042
(0.0094) 		0.00891
(0.0533) 		0.0422
(0.13) 		0.0081
(0.0501) 		0.0963
(0.211) 		0.436
(0.552) 		0.0873
(0.2)
LMAN1 13 (3%) 380 0.00018
(0.00559) 		0.0878
(0.2) 		0.344
(0.471) 		0.00148
(0.0195) 		0.161
(0.289) 		0.00219
(0.0243) 		0.105
(0.223) 		0.0157
(0.0731) 		0.0392
(0.125) 		0.0197
(0.0831)
SLC9A10 13 (3%) 380 0.00034
(0.00823) 		0.241
(0.372) 		0.668
(0.747) 		0.00547
(0.0407) 		0.00237
(0.0252) 		0.159
(0.286) 		0.0104
(0.0578) 		0.316
(0.445) 		0.0155
(0.0727) 		0.0235
(0.0926)
GXYLT1 14 (4%) 379 0.0075
(0.0482) 		0.00908
(0.0539) 		0.0255
(0.0978) 		0.00349
(0.032) 		0.0094
(0.0551) 		0.00462
(0.0367) 		0.0869
(0.199) 		0.0935
(0.208) 		0.137
(0.263) 		0.282
(0.413)
EIF4G3 20 (5%) 373 0.0004
(0.00912) 		0.0176
(0.0781) 		0.229
(0.36) 		0.0312
(0.109) 		0.0175
(0.0778) 		0.00751
(0.0482) 		0.259
(0.389) 		0.0849
(0.197) 		0.182
(0.311) 		0.00551
(0.0408)
CDH16 16 (4%) 377 0.0793
(0.189) 		0.0095
(0.0552) 		0.21
(0.342) 		0.0181
(0.0791) 		0.03
(0.107) 		0.00132
(0.0183) 		0.0212
(0.0871) 		0.136
(0.262) 		0.221
(0.353) 		0.0384
(0.123)
PLEKHA6 23 (6%) 370 0.00072
(0.0129) 		0.00349
(0.032) 		0.653
(0.733) 		0.0714
(0.177) 		0.172
(0.3) 		0.0113
(0.0607) 		0.00487
(0.0379) 		0.0296
(0.106) 		0.784
(0.843) 		0.0482
(0.14)
TMEM41A 9 (2%) 384 0.00331
(0.0308) 		0.00435
(0.0354) 		0.0362
(0.119) 		0.00299
(0.0291) 		0.0303
(0.107) 		0.00565
(0.0414) 		0.0622
(0.164) 		0.585
(0.68) 		0.433
(0.55) 		0.144
(0.27)
FOXN3 13 (3%) 380 0.00017
(0.00544) 		0.00731
(0.0475) 		0.0824
(0.193) 		0.00099
(0.0156) 		0.033
(0.112) 		0.121
(0.243) 		0.0302
(0.107) 		0.089
(0.202) 		0.0851
(0.197) 		0.0259
(0.0988)
KIAA1462 24 (6%) 369 0.102
(0.219) 		0.0434
(0.132) 		0.0521
(0.147) 		0.0199
(0.084) 		0.239
(0.371) 		0.00704
(0.0465) 		0.0224
(0.09) 		0.0398
(0.126) 		0.147
(0.274) 		0.0136
(0.067)
SAMD9L 22 (6%) 371 0.0201
(0.0845) 		0.019
(0.0813) 		0.336
(0.465) 		0.00248
(0.026) 		0.0404
(0.127) 		0.553
(0.654) 		0.0194
(0.0823) 		0.136
(0.261) 		0.00563
(0.0413) 		0.0525
(0.148)
RAD50 12 (3%) 381 0.0009
(0.0146) 		0.00315
(0.0301) 		0.687
(0.763) 		0.0959
(0.211) 		0.00732
(0.0475) 		0.0466
(0.137) 		0.0373
(0.121) 		0.189
(0.32) 		0.432
(0.549) 		0.029
(0.105)
COIL 10 (3%) 383 0.024
(0.0938) 		0.0135
(0.0669) 		0.326
(0.456) 		4e-05
(0.00234) 		0.0645
(0.167) 		0.0223
(0.0899) 		0.00108
(0.0164) 		0.0905
(0.204) 		0.0488
(0.141) 		0.1
(0.217)
CBWD6 7 (2%) 386 0.0126
(0.0646) 		0.0247
(0.0955) 		0.197
(0.327) 		0.00012
(0.00438) 		0.0802
(0.19) 		0.0169
(0.076) 		0.00164
(0.0207) 		0.388
(0.51) 		0.142
(0.268) 		0.00644
(0.0442)
TFE3 9 (2%) 384 0.166
(0.295) 		0.00407
(0.0342) 		0.58
(0.677) 		0.00114
(0.017) 		0.0649
(0.168) 		0.00997
(0.0566) 		0.0113
(0.0607) 		0.0291
(0.105) 		0.0775
(0.186) 		0.011
(0.0596)
GCC2 14 (4%) 379 0.0082
(0.0503) 		0.29
(0.42) 		0.0194
(0.0823) 		0.00455
(0.0363) 		4e-05
(0.00234) 		0.525
(0.629) 		0.00295
(0.029) 		0.0137
(0.0675) 		0.157
(0.284) 		0.21
(0.342)
DNAH7 52 (13%) 341 0.0161
(0.0739) 		0.127
(0.251) 		0.518
(0.624) 		0.137
(0.263) 		0.00399
(0.034) 		0.00267
(0.0274) 		0.0018
(0.0218) 		0.00644
(0.0442) 		0.145
(0.271) 		0.00015
(0.00497)
RAD51AP2 16 (4%) 377 0.0113
(0.0605) 		0.148
(0.275) 		0.124
(0.248) 		0.0153
(0.0722) 		0.00838
(0.0511) 		0.00212
(0.0239) 		0.0813
(0.191) 		0.0856
(0.198) 		0.00195
(0.0228) 		0.04
(0.126)
U2AF2 14 (4%) 379 0.00146
(0.0194) 		0.00197
(0.0229) 		0.0417
(0.129) 		0.0488
(0.141) 		0.54
(0.642) 		0.00866
(0.0524) 		0.252
(0.383) 		0.873
(0.915) 		0.194
(0.325) 		0.00037
(0.00872)
ADNP 18 (5%) 375 1e-05
(0.000978) 		0.0023
(0.0248) 		0.121
(0.244) 		0.0243
(0.0947) 		0.121
(0.244) 		0.037
(0.121) 		0.0138
(0.0676) 		0.193
(0.324) 		0.0142
(0.0688) 		0.193
(0.324)
BCLAF1 30 (8%) 363 0.0427
(0.13) 		0.159
(0.287) 		0.00268
(0.0275) 		0.333
(0.462) 		0.266
(0.396) 		0.0371
(0.121) 		0.326
(0.456) 		0.0204
(0.085) 		0.0007
(0.0127) 		0.0164
(0.0748)
RAI1 29 (7%) 364 0.00046
(0.01) 		0.0236
(0.0928) 		0.134
(0.26) 		0.0203
(0.085) 		0.278
(0.409) 		0.00269
(0.0275) 		0.00568
(0.0415) 		0.0296
(0.106) 		0.405
(0.523) 		0.177
(0.306)
ERBB3 35 (9%) 358 0.0004
(0.00912) 		0.0162
(0.0741) 		0.0721
(0.178) 		0.00955
(0.0554) 		0.0443
(0.133) 		0.0123
(0.0638) 		0.0056
(0.0412) 		0.442
(0.558) 		0.368
(0.493) 		0.417
(0.534)
EPHX1 10 (3%) 383 0.0135
(0.0669) 		0.251
(0.382) 		0.123
(0.246) 		0.00346
(0.0318) 		0.0459
(0.136) 		0.0745
(0.182) 		0.00236
(0.0251) 		0.0768
(0.185) 		0.00715
(0.0468) 		0.0002
(0.00604)
NT5DC1 8 (2%) 385 0.00506
(0.0387) 		0.00409
(0.0343) 		0.286
(0.417) 		0.00132
(0.0183) 		0.0257
(0.0983) 		0.118
(0.239) 		0.0352
(0.117) 		0.491
(0.599) 		0.345
(0.473) 		0.0405
(0.127)
KIAA1009 16 (4%) 377 0.027
(0.101) 		0.0346
(0.116) 		0.0918
(0.206) 		0.00246
(0.0259) 		0.00786
(0.0493) 		0.00928
(0.0546) 		0.169
(0.299) 		0.282
(0.413) 		0.193
(0.324) 		0.0404
(0.127)
FERMT2 12 (3%) 381 0.144
(0.27) 		0.0071
(0.0466) 		0.124
(0.248) 		1e-05
(0.000978) 		0.0575
(0.156) 		0.0141
(0.0687) 		0.152
(0.279) 		0.00492
(0.0382) 		0.0398
(0.126) 		0.012
(0.0628)
TP53BP1 22 (6%) 371 0.0204
(0.0851) 		0.641
(0.724) 		0.448
(0.564) 		0.0135
(0.0667) 		0.00685
(0.0458) 		0.411
(0.529) 		7e-05
(0.00325) 		0.053
(0.149) 		0.00236
(0.0251) 		2e-05
(0.00161)
CHPF2 16 (4%) 377 0.0187
(0.0807) 		9e-05
(0.00368) 		0.692
(0.768) 		0.00253
(0.0264) 		0.0107
(0.059) 		0.065
(0.168) 		0.0124
(0.0639) 		0.284
(0.415) 		0.189
(0.32) 		0.0265
(0.1)
IGFBP1 11 (3%) 382 0.0122
(0.0637) 		0.237
(0.368) 		0.01
(0.0568) 		0.00425
(0.0349) 		0.0052
(0.0395) 		0.173
(0.301) 		0.00574
(0.0416) 		0.062
(0.163) 		0.0921
(0.206) 		0.0441
(0.133)
ZCCHC11 18 (5%) 375 7e-05
(0.00325) 		0.00595
(0.0426) 		0.706
(0.779) 		0.0304
(0.107) 		0.0158
(0.0732) 		0.00153
(0.0199) 		0.19
(0.321) 		0.191
(0.321) 		0.525
(0.629) 		0.0127
(0.0649)
CLDN6 9 (2%) 384 0.00092
(0.0148) 		0.00962
(0.0556) 		0.177
(0.305) 		0.0379
(0.122) 		0.22
(0.352) 		0.00573
(0.0416) 		0.0275
(0.102) 		0.381
(0.504) 		0.0648
(0.168) 		0.0499
(0.143)
SULF1 24 (6%) 369 0.0008
(0.0136) 		0.285
(0.416) 		0.158
(0.285) 		0.606
(0.697) 		0.00982
(0.0561) 		0.0102
(0.0572) 		0.00664
(0.045) 		0.0208
(0.0861) 		0.194
(0.325) 		0.0288
(0.105)
PFKP 18 (5%) 375 0.00212
(0.0239) 		0.00212
(0.0239) 		0.0686
(0.173) 		0.00062
(0.012) 		0.402
(0.521) 		0.0107
(0.0589) 		0.0136
(0.067) 		0.0018
(0.0218) 		0.603
(0.694) 		0.159
(0.287)
DAPK1 22 (6%) 371 0.0673
(0.172) 		0.00072
(0.0129) 		0.109
(0.229) 		0.00395
(0.0337) 		0.00989
(0.0563) 		3e-05
(0.00196) 		0.0003
(0.00776) 		0.052
(0.147) 		0.44
(0.556) 		0.0134
(0.0667)
SLC10A6 8 (2%) 385 0.148
(0.275) 		0.0921
(0.206) 		0.312
(0.442) 		0.0124
(0.0638) 		0.02
(0.0842) 		0.0391
(0.124) 		0.0376
(0.122) 		0.26
(0.39) 		0.0325
(0.111) 		0.0472
(0.138)
USP15 7 (2%) 386 0.00393
(0.0336) 		0.32
(0.449) 		0.0323
(0.111) 		0.0157
(0.0731) 		0.0316
(0.109) 		0.108
(0.227) 		0.0206
(0.0856) 		0.876
(0.917) 		0.0608
(0.161) 		0.00387
(0.0335)
PCCA 12 (3%) 381 0.00828
(0.0507) 		0.0944
(0.209) 		0.348
(0.475) 		0.0514
(0.146) 		0.0136
(0.067) 		0.0308
(0.108) 		0.00076
(0.0133) 		0.037
(0.121) 		0.0686
(0.174) 		0.0496
(0.142)
CCDC150 10 (3%) 383 0.00024
(0.00678) 		0.00059
(0.0117) 		0.0914
(0.205) 		1e-05
(0.000978) 		0.0378
(0.122) 		0.00614
(0.0431) 		0.0657
(0.169) 		0.0902
(0.203) 		0.0764
(0.185) 		0.00299
(0.0291)
SLFN13 9 (2%) 384 0.0112
(0.0602) 		0.271
(0.402) 		0.752
(0.818) 		0.0005
(0.0106) 		0.00596
(0.0426) 		0.209
(0.341) 		0.0172
(0.0768) 		0.0278
(0.103) 		0.0232
(0.0917) 		0.195
(0.326)
GATA3 18 (5%) 375 0.00056
(0.0113) 		0.00401
(0.034) 		0.133
(0.258) 		0.0113
(0.0604) 		0.0135
(0.067) 		0.00503
(0.0387) 		0.0127
(0.0649) 		0.089
(0.202) 		0.78
(0.84) 		0.736
(0.803)
LRFN3 22 (6%) 371 0.0117
(0.0619) 		3e-05
(0.00196) 		0.0602
(0.161) 		0.00104
(0.0161) 		0.0215
(0.0878) 		0.00877
(0.0528) 		0.0589
(0.159) 		0.0782
(0.187) 		0.273
(0.404) 		0.0339
(0.114)
PNPLA7 23 (6%) 370 0.00788
(0.0494) 		0.00228
(0.0247) 		0.0343
(0.115) 		0.0173
(0.0772) 		0.0298
(0.107) 		0.0612
(0.162) 		0.0816
(0.192) 		0.0316
(0.109) 		0.215
(0.347) 		0.0779
(0.187)
ABCB4 26 (7%) 367 0.0009
(0.0146) 		0.0142
(0.0688) 		0.347
(0.474) 		0.00391
(0.0336) 		0.0273
(0.102) 		0.0192
(0.0817) 		0.0942
(0.209) 		0.0244
(0.0949) 		0.157
(0.284) 		0.109
(0.228)
FAM186B 13 (3%) 380 0.028
(0.103) 		0.0628
(0.165) 		0.398
(0.517) 		0.045
(0.134) 		0.0038
(0.0333) 		0.0173
(0.0769) 		0.00492
(0.0382) 		0.13
(0.255) 		0.346
(0.473) 		0.00974
(0.0559)
OPLAH 23 (6%) 370 1e-05
(0.000978) 		0.0003
(0.00776) 		0.0545
(0.151) 		0.00012
(0.00438) 		0.0372
(0.121) 		0.00092
(0.0148) 		0.53
(0.634) 		0.491
(0.599) 		0.371
(0.496) 		0.04
(0.126)
ANAPC1 16 (4%) 377 0.00018
(0.00559) 		0.00947
(0.0552) 		0.0746
(0.182) 		4e-05
(0.00234) 		0.00132
(0.0183) 		0.00048
(0.0104) 		0.0113
(0.0605) 		0.648
(0.729) 		0.215
(0.347) 		0.145
(0.272)
HIVEP3 30 (8%) 363 0.001
(0.0157) 		0.00574
(0.0416) 		0.0232
(0.0916) 		0.101
(0.218) 		0.00125
(0.0179) 		0.364
(0.489) 		0.103
(0.221) 		0.486
(0.596) 		0.00459
(0.0366) 		0.0028
(0.0282)
COL11A1 41 (10%) 352 0.311
(0.441) 		0.0255
(0.0978) 		0.769
(0.831) 		0.00045
(0.00985) 		0.0182
(0.0794) 		0.0204
(0.0851) 		0.0415
(0.128) 		0.133
(0.258) 		0.324
(0.453) 		0.0258
(0.0986)
HAUS6 13 (3%) 380 0.00194
(0.0227) 		0.0667
(0.171) 		0.331
(0.461) 		0.00627
(0.0436) 		0.0202
(0.0847) 		0.571
(0.669) 		0.00032
(0.00794) 		0.291
(0.421) 		0.00579
(0.0419) 		0.0295
(0.106)
HSPB8 6 (2%) 387 0.00949
(0.0552) 		0.0293
(0.106) 		0.165
(0.294) 		0.00063
(0.0121) 		0.00612
(0.0431) 		0.00326
(0.0307) 		0.0444
(0.133) 		0.542
(0.645) 		0.144
(0.27) 		0.312
(0.442)
ITPR2 27 (7%) 366 0.00164
(0.0207) 		0.112
(0.232) 		0.162
(0.29) 		2e-05
(0.00161) 		0.027
(0.101) 		0.294
(0.423) 		0.0321
(0.11) 		0.484
(0.594) 		0.0479
(0.14) 		0.00211
(0.0239)
PDS5A 17 (4%) 376 0.00131
(0.0183) 		0.107
(0.225) 		0.561
(0.661) 		0.0318
(0.11) 		0.0142
(0.0687) 		0.115
(0.235) 		0.0351
(0.117) 		0.0243
(0.0949) 		0.0459
(0.136) 		0.167
(0.297)
NLRC5 23 (6%) 370 1e-05
(0.000978) 		0.0178
(0.0785) 		0.125
(0.249) 		0.0213
(0.0873) 		0.0287
(0.105) 		0.0865
(0.199) 		0.0353
(0.117) 		0.068
(0.173) 		0.0695
(0.175) 		0.04
(0.126)
TEX15 27 (7%) 366 0.0246
(0.0954) 		0.00085
(0.0142) 		0.621
(0.71) 		0.0527
(0.148) 		0.519
(0.625) 		0.0053
(0.0399) 		0.0177
(0.0782) 		0.0208
(0.0861) 		0.249
(0.38) 		0.0129
(0.0654)
ZNF142 19 (5%) 374 8e-05
(0.00338) 		0.00309
(0.0297) 		0.0464
(0.137) 		1e-05
(0.000978) 		9e-05
(0.00368) 		0.00031
(0.00787) 		0.0588
(0.158) 		0.118
(0.24) 		0.417
(0.534) 		0.0808
(0.191)
ALPK1 19 (5%) 374 0.00105
(0.0162) 		3e-05
(0.00196) 		0.0161
(0.0739) 		0.0179
(0.0787) 		0.013
(0.0656) 		0.0902
(0.203) 		0.0347
(0.116) 		0.0718
(0.177) 		0.0608
(0.161) 		0.092
(0.206)
C9ORF98 10 (3%) 383 0.00592
(0.0425) 		0.0265
(0.1) 		0.022
(0.0891) 		0.0158
(0.0732) 		0.0256
(0.098) 		0.132
(0.257) 		0.018
(0.0791) 		0.754
(0.819) 		0.578
(0.675) 		0.17
(0.299)
TOPBP1 16 (4%) 377 0.0483
(0.14) 		0.171
(0.299) 		0.0924
(0.207) 		0.0189
(0.0812) 		0.0685
(0.173) 		0.4
(0.519) 		0.012
(0.0627) 		0.0242
(0.0944) 		0.0207
(0.0857) 		0.00674
(0.0453)
ZNF295 18 (5%) 375 3e-05
(0.00196) 		0.00175
(0.0215) 		0.168
(0.297) 		0.0492
(0.142) 		0.459
(0.572) 		0.0101
(0.0568) 		0.0245
(0.0952) 		0.349
(0.475) 		0.0144
(0.0694) 		0.0948
(0.209)
PDS5B 19 (5%) 374 0.00098
(0.0154) 		0.00212
(0.0239) 		0.717
(0.788) 		0.0001
(0.00389) 		0.00889
(0.0533) 		0.0166
(0.0751) 		0.0905
(0.204) 		0.0703
(0.176) 		0.0775
(0.186) 		0.017
(0.0761)
PPARGC1B 10 (3%) 383 0.00544
(0.0406) 		0.00785
(0.0493) 		0.0821
(0.192) 		0.0196
(0.0829) 		0.0145
(0.0696) 		0.0062
(0.0434) 		0.582
(0.678) 		0.277
(0.408) 		0.703
(0.776) 		0.00257
(0.0266)
C1ORF14 14 (4%) 379 0.00071
(0.0128) 		0.00524
(0.0396) 		0.141
(0.268) 		8e-05
(0.00338) 		0.0834
(0.194) 		7e-05
(0.00325) 		0.372
(0.496) 		0.0301
(0.107) 		0.657
(0.738) 		0.0449
(0.134)
RGS12 30 (8%) 363 0.00362
(0.0326) 		0.0176
(0.0778) 		0.0345
(0.115) 		1e-05
(0.000978) 		0.0267
(0.101) 		0.126
(0.25) 		0.202
(0.333) 		0.298
(0.428) 		0.407
(0.525) 		0.0451
(0.134)
WAPAL 16 (4%) 377 0.00563
(0.0413) 		0.0247
(0.0955) 		0.707
(0.78) 		0.206
(0.338) 		0.0123
(0.0638) 		0.205
(0.337) 		0.033
(0.112) 		0.0194
(0.0823) 		0.189
(0.32) 		0.00054
(0.011)
SEZ6 13 (3%) 380 0.0776
(0.186) 		0.0365
(0.12) 		0.0495
(0.142) 		0.00392
(0.0336) 		0.204
(0.336) 		0.0107
(0.0589) 		0.0361
(0.119) 		0.691
(0.766) 		0.241
(0.372) 		0.00438
(0.0355)
THSD1 22 (6%) 371 0.0684
(0.173) 		0.00467
(0.037) 		0.0812
(0.191) 		0.078
(0.187) 		0.116
(0.236) 		0.0453
(0.135) 		0.00123
(0.0178) 		0.0125
(0.0643) 		0.00053
(0.0109) 		0.00705
(0.0465)
SLC7A13 11 (3%) 382 0.00036
(0.00857) 		0.00784
(0.0493) 		0.0907
(0.204) 		0.0038
(0.0333) 		0.0917
(0.206) 		0.0308
(0.108) 		0.00761
(0.0486) 		0.0347
(0.116) 		0.492
(0.6) 		0.145
(0.272)
EPB41L5 10 (3%) 383 0.00228
(0.0247) 		0.0245
(0.0951) 		0.26
(0.39) 		0.00078
(0.0134) 		0.0219
(0.0889) 		0.0364
(0.119) 		0.585
(0.68) 		0.0898
(0.203) 		0.904
(0.94) 		0.0411
(0.127)
VWA1 7 (2%) 386 0.0118
(0.0624) 		0.0407
(0.127) 		0.412
(0.53) 		0.0517
(0.147) 		0.0306
(0.108) 		0.0202
(0.0847) 		0.0207
(0.0857) 		0.0738
(0.181) 		0.117
(0.238) 		0.0424
(0.13)
LONRF1 6 (2%) 387 0.0285
(0.104) 		0.0304
(0.107) 		0.627
(0.714) 		0.173
(0.301) 		0.0103
(0.0574) 		0.00301
(0.0293) 		0.00227
(0.0247) 		0.14
(0.266) 		0.663
(0.742) 		0.043
(0.131)
RUSC1 19 (5%) 374 0.00709
(0.0466) 		0.00585
(0.0422) 		0.638
(0.722) 		0.0865
(0.199) 		0.0223
(0.0898) 		0.115
(0.235) 		0.00013
(0.00462) 		0.132
(0.257) 		0.0121
(0.0632) 		0.00226
(0.0246)
TACC2 33 (8%) 360 0.00063
(0.0121) 		0.139
(0.265) 		0.0101
(0.0568) 		0.0342
(0.115) 		0.121
(0.243) 		0.0756
(0.184) 		0.0169
(0.076) 		0.272
(0.403) 		0.00051
(0.0108) 		0.00221
(0.0243)
C2CD3 23 (6%) 370 0.175
(0.303) 		0.011
(0.0596) 		0.834
(0.882) 		0.0285
(0.104) 		6e-05
(0.00292) 		0.379
(0.502) 		0.0386
(0.123) 		0.0056
(0.0412) 		0.177
(0.305) 		0.00278
(0.0282)
CEP120 12 (3%) 381 0.0001
(0.00389) 		0.218
(0.349) 		0.276
(0.407) 		0.0291
(0.105) 		0.0472
(0.138) 		0.0403
(0.127) 		0.014
(0.0681) 		0.027
(0.101) 		0.222
(0.353) 		0.07
(0.175)
FIBP 11 (3%) 382 0.0891
(0.202) 		0.00691
(0.046) 		0.0907
(0.204) 		0.00072
(0.0129) 		0.00753
(0.0483) 		0.00056
(0.0113) 		0.00296
(0.029) 		0.171
(0.299) 		0.901
(0.939) 		0.0284
(0.104)
ANKRD12 20 (5%) 373 0.00127
(0.018) 		0.02
(0.0842) 		0.0999
(0.216) 		1e-05
(0.000978) 		0.17
(0.299) 		3e-05
(0.00196) 		0.011
(0.0596) 		0.0933
(0.208) 		0.24
(0.371) 		0.00481
(0.0377)
CRYBG3 14 (4%) 379 0.00035
(0.0084) 		0.00956
(0.0554) 		0.462
(0.574) 		0.0453
(0.135) 		0.0476
(0.139) 		0.196
(0.326) 		0.0501
(0.143) 		0.014
(0.0683) 		0.0768
(0.185) 		0.0327
(0.112)
PIWIL2 9 (2%) 384 0.0007
(0.0127) 		0.0396
(0.125) 		0.75
(0.816) 		0.396
(0.516) 		0.0078
(0.0492) 		0.0888
(0.202) 		0.0268
(0.101) 		0.0995
(0.216) 		0.0485
(0.141) 		0.0078
(0.0492)
C11ORF63 20 (5%) 373 0.231
(0.362) 		0.00892
(0.0533) 		0.581
(0.677) 		0.0123
(0.0638) 		0.206
(0.338) 		0.00684
(0.0457) 		0.0524
(0.148) 		0.0255
(0.0976) 		0.00169
(0.0211) 		0.0123
(0.0638)
EGR1 12 (3%) 381 0.00028
(0.00747) 		0.0352
(0.117) 		0.212
(0.344) 		0.013
(0.0656) 		0.0375
(0.122) 		0.0455
(0.136) 		0.0157
(0.0731) 		1
(1.00) 		0.38
(0.504) 		0.111
(0.232)
RNMT 8 (2%) 385 0.00538
(0.0403) 		0.345
(0.472) 		0.276
(0.408) 		0.0158
(0.0733) 		0.00119
(0.0174) 		0.643
(0.726) 		0.00146
(0.0194) 		0.17
(0.299) 		0.00737
(0.0477) 		0.0252
(0.0969)
PHTF1 11 (3%) 382 0.204
(0.336) 		0.157
(0.284) 		0.0462
(0.137) 		0.0048
(0.0376) 		0.0283
(0.104) 		0.0115
(0.0615) 		0.0706
(0.176) 		0.171
(0.299) 		0.0337
(0.114) 		0.0275
(0.102)
MORC1 13 (3%) 380 0.464
(0.576) 		0.247
(0.379) 		0.0765
(0.185) 		0.0168
(0.0757) 		0.0135
(0.0669) 		0.0275
(0.102) 		0.0107
(0.0588) 		0.0169
(0.076) 		0.0379
(0.122) 		0.081
(0.191)
KCNH1 20 (5%) 373 0.0152
(0.0718) 		0.00631
(0.0437) 		0.105
(0.222) 		0.00638
(0.044) 		0.0471
(0.138) 		0.123
(0.246) 		0.108
(0.228) 		0.0169
(0.0758) 		0.122
(0.245) 		0.00816
(0.0502)
NRK 26 (7%) 367 0.353
(0.479) 		0.0601
(0.16) 		0.0109
(0.0595) 		0.0884
(0.201) 		0.0925
(0.207) 		0.00191
(0.0224) 		0.017
(0.0763) 		0.0111
(0.06) 		0.0107
(0.059) 		0.0307
(0.108)
ZNF334 13 (3%) 380 0.00448
(0.036) 		0.367
(0.492) 		0.28
(0.411) 		3e-05
(0.00196) 		0.0126
(0.0647) 		0.00533
(0.04) 		0.00391
(0.0336) 		0.13
(0.255) 		0.0652
(0.168) 		0.0055
(0.0408)
ABCC1 14 (4%) 379 0.00799
(0.0497) 		0.00109
(0.0165) 		0.341
(0.468) 		6e-05
(0.00292) 		0.0441
(0.133) 		0.0029
(0.0289) 		0.358
(0.484) 		0.0304
(0.107) 		0.857
(0.902) 		0.218
(0.35)
HIVEP2 27 (7%) 366 0.00769
(0.0489) 		0.00394
(0.0337) 		0.3
(0.43) 		0.024
(0.0939) 		0.0304
(0.107) 		0.0161
(0.0739) 		0.0622
(0.164) 		0.121
(0.244) 		0.147
(0.274) 		0.0133
(0.0664)
ATP2C1 13 (3%) 380 0.124
(0.248) 		0.0134
(0.0666) 		0.546
(0.647) 		7e-05
(0.00325) 		0.107
(0.226) 		0.448
(0.563) 		0.00177
(0.0216) 		0.02
(0.0842) 		0.0198
(0.0835) 		0.0147
(0.0703)
FIGNL1 9 (2%) 384 0.049
(0.142) 		0.0206
(0.0856) 		0.14
(0.266) 		0.00018
(0.00559) 		0.00892
(0.0533) 		0.0129
(0.0654) 		0.132
(0.256) 		0.0975
(0.213) 		0.431
(0.548) 		0.0073
(0.0475)
WASF3 19 (5%) 374 0.00678
(0.0455) 		8e-05
(0.00338) 		0.213
(0.345) 		0.00139
(0.0189) 		0.0173
(0.0769) 		0.109
(0.229) 		0.0317
(0.11) 		0.364
(0.489) 		0.241
(0.372) 		0.591
(0.683)
ATXN2L 23 (6%) 370 0.00197
(0.0229) 		1e-05
(0.000978) 		0.66
(0.74) 		9e-05
(0.00368) 		8e-05
(0.00338) 		1e-05
(0.000978) 		0.102
(0.219) 		0.219
(0.351) 		0.61
(0.701) 		0.152
(0.279)
GLI1 20 (5%) 373 0.0005
(0.0106) 		0.0021
(0.0238) 		0.0628
(0.165) 		0.0147
(0.0703) 		0.00173
(0.0213) 		0.0566
(0.155) 		0.0059
(0.0424) 		0.0503
(0.144) 		0.252
(0.383) 		0.119
(0.241)
MFRP 15 (4%) 378 0.00024
(0.00678) 		0.00299
(0.0291) 		0.0214
(0.0875) 		0.0022
(0.0243) 		0.0632
(0.165) 		8e-05
(0.00338) 		0.471
(0.583) 		0.212
(0.344) 		0.635
(0.72) 		0.151
(0.277)
C9ORF131 19 (5%) 374 0.0001
(0.00389) 		0.0786
(0.188) 		0.508
(0.615) 		0.00199
(0.023) 		0.0314
(0.109) 		0.0371
(0.121) 		0.041
(0.127) 		0.855
(0.9) 		0.0756
(0.184) 		0.399
(0.518)
PAFAH1B1 15 (4%) 378 0.00787
(0.0494) 		0.0166
(0.075) 		0.0859
(0.198) 		0.00624
(0.0436) 		0.0277
(0.103) 		0.177
(0.305) 		0.0459
(0.136) 		0.064
(0.167) 		0.213
(0.345) 		0.0964
(0.211)
INF2 19 (5%) 374 0.00551
(0.0408) 		0.0343
(0.115) 		0.0191
(0.0815) 		0.32
(0.449) 		0.198
(0.328) 		0.0413
(0.128) 		0.114
(0.235) 		0.364
(0.489) 		0.218
(0.35) 		0.0179
(0.0787)
PIGT 11 (3%) 382 0.00672
(0.0453) 		0.154
(0.281) 		0.492
(0.599) 		0.125
(0.249) 		0.00398
(0.0339) 		0.0411
(0.127) 		0.377
(0.501) 		0.918
(0.951) 		0.0363
(0.119) 		0.0483
(0.14)
ARHGAP5 22 (6%) 371 0.00402
(0.034) 		0.0214
(0.0876) 		0.618
(0.708) 		0.333
(0.462) 		0.0355
(0.117) 		0.0142
(0.0688) 		0.285
(0.416) 		0.274
(0.405) 		0.945
(0.974) 		0.00276
(0.028)
PTCHD3 19 (5%) 374 0.00014
(0.00477) 		0.00548
(0.0408) 		0.075
(0.183) 		0.00275
(0.0279) 		0.0028
(0.0282) 		0.116
(0.237) 		0.00189
(0.0223) 		0.131
(0.256) 		0.313
(0.444) 		0.103
(0.22)
TBX4 14 (4%) 379 0.00131
(0.0183) 		0.0643
(0.167) 		0.412
(0.53) 		0.0926
(0.207) 		0.0282
(0.104) 		0.0229
(0.091) 		0.0152
(0.0718) 		0.00848
(0.0516) 		0.347
(0.473) 		0.344
(0.471)
ZMYM4 19 (5%) 374 0.0007
(0.0127) 		0.0176
(0.078) 		0.237
(0.368) 		0.00283
(0.0284) 		0.095
(0.209) 		0.0484
(0.14) 		0.414
(0.532) 		0.0387
(0.123) 		1
(1.00) 		0.157
(0.284)
SPTY2D1 19 (5%) 374 0.0069
(0.046) 		0.0312
(0.109) 		0.0277
(0.103) 		0.00139
(0.0189) 		0.217
(0.349) 		0.0285
(0.104) 		0.745
(0.811) 		0.284
(0.415) 		0.412
(0.531) 		0.0706
(0.176)
PPIG 18 (5%) 375 0.00119
(0.0174) 		0.0356
(0.118) 		0.0915
(0.205) 		0.0219
(0.089) 		0.00821
(0.0503) 		0.00328
(0.0307) 		0.113
(0.233) 		0.345
(0.473) 		0.19
(0.321) 		0.0537
(0.15)
PAX2 12 (3%) 381 0.00488
(0.038) 		0.037
(0.121) 		0.0165
(0.0749) 		0.00069
(0.0127) 		0.013
(0.0656) 		0.12
(0.242) 		0.17
(0.299) 		0.0854
(0.197) 		0.279
(0.411) 		0.0622
(0.164)
GANAB 18 (5%) 375 0.0459
(0.136) 		0.0135
(0.0669) 		0.163
(0.29) 		0.00969
(0.0558) 		0.0306
(0.108) 		0.309
(0.439) 		0.185
(0.316) 		0.0887
(0.201) 		0.0421
(0.13) 		0.159
(0.287)
WNT16 12 (3%) 381 6e-05
(0.00292) 		0.0369
(0.12) 		0.635
(0.719) 		0.0531
(0.149) 		0.0429
(0.131) 		0.0188
(0.0809) 		0.181
(0.31) 		0.192
(0.323) 		0.597
(0.69) 		0.0407
(0.127)
MTMR9 13 (3%) 380 0.0016
(0.0204) 		0.0298
(0.106) 		0.0355
(0.117) 		1e-05
(0.000978) 		0.262
(0.391) 		0.156
(0.283) 		0.0112
(0.0602) 		0.131
(0.256) 		0.491
(0.599) 		0.333
(0.462)
KLRK1 5 (1%) 388 0.0299
(0.107) 		0.0692
(0.174) 		0.802
(0.858) 		0.0387
(0.123) 		0.171
(0.299) 		0.0276
(0.102) 		0.0197
(0.0834) 		0.489
(0.598) 		0.291
(0.421) 		0.0367
(0.12)
CCDC148 8 (2%) 385 0.153
(0.28) 		0.00904
(0.0537) 		0.262
(0.392) 		0.122
(0.245) 		0.0435
(0.132) 		0.0088
(0.0529) 		0.019
(0.0813) 		0.171
(0.3) 		0.0764
(0.185) 		0.00168
(0.021)
PHACTR4 10 (3%) 383 0.0359
(0.118) 		0.00014
(0.00477) 		0.363
(0.488) 		3e-05
(0.00196) 		0.00116
(0.0172) 		0.0698
(0.175) 		0.0859
(0.198) 		0.077
(0.185) 		0.0656
(0.169) 		0.0275
(0.102)
JAK1 17 (4%) 376 0.00359
(0.0325) 		0.00602
(0.0428) 		0.381
(0.505) 		0.0584
(0.158) 		0.00057
(0.0114) 		0.00379
(0.0333) 		0.192
(0.323) 		0.105
(0.222) 		0.132
(0.257) 		0.0315
(0.109)
ZC3H4 20 (5%) 373 0.00867
(0.0524) 		0.00241
(0.0255) 		0.734
(0.803) 		0.256
(0.386) 		0.145
(0.272) 		0.0484
(0.141) 		0.158
(0.286) 		0.185
(0.315) 		0.00706
(0.0465) 		0.0129
(0.0653)
TP53BP2 14 (4%) 379 0.0282
(0.104) 		0.0311
(0.108) 		0.585
(0.681) 		0.0343
(0.115) 		0.0235
(0.0926) 		0.0542
(0.151) 		0.0196
(0.0828) 		0.188
(0.319) 		0.634
(0.719) 		0.442
(0.558)
ORC3L 12 (3%) 381 0.0428
(0.131) 		0.0268
(0.101) 		0.524
(0.628) 		5e-05
(0.00258) 		0.0941
(0.208) 		0.0203
(0.085) 		0.158
(0.285) 		0.0268
(0.101) 		0.878
(0.918) 		0.28
(0.411)
MMP3 12 (3%) 381 0.00091
(0.0147) 		0.286
(0.417) 		0.266
(0.397) 		0.00362
(0.0326) 		0.0001
(0.00389) 		0.253
(0.384) 		0.00964
(0.0556) 		0.315
(0.445) 		0.0147
(0.0702) 		0.0566
(0.155)
ACP1 9 (2%) 384 0.00074
(0.0131) 		0.00574
(0.0416) 		0.498
(0.605) 		0.00027
(0.00734) 		0.169
(0.299) 		0.0474
(0.139) 		0.0242
(0.0944) 		0.378
(0.502) 		0.849
(0.894) 		0.063
(0.165)
C4ORF6 12 (3%) 381 0.00012
(0.00438) 		0.0586
(0.158) 		0.204
(0.336) 		0.013
(0.0655) 		0.0178
(0.0785) 		0.00032
(0.00794) 		0.00949
(0.0552) 		0.189
(0.32) 		0.604
(0.695) 		0.14
(0.266)
CA2 7 (2%) 386 0.11
(0.23) 		0.00968
(0.0558) 		0.0225
(0.0903) 		0.00428
(0.0351) 		0.267
(0.398) 		0.01
(0.0567) 		0.493
(0.601) 		0.215
(0.347) 		0.49
(0.598) 		0.00468
(0.037)
GLYR1 15 (4%) 378 0.0052
(0.0395) 		0.123
(0.246) 		0.0352
(0.117) 		0.00221
(0.0243) 		0.125
(0.249) 		0.00485
(0.0379) 		0.12
(0.242) 		0.0772
(0.186) 		0.466
(0.578) 		0.04
(0.126)
RCOR3 14 (4%) 379 0.00026
(0.00718) 		0.00259
(0.0268) 		0.0783
(0.187) 		3e-05
(0.00196) 		0.124
(0.247) 		0.0225
(0.0903) 		0.0873
(0.2) 		0.0295
(0.106) 		0.334
(0.463) 		0.245
(0.376)
TNFSF10 8 (2%) 385 0.196
(0.327) 		0.507
(0.614) 		0.185
(0.315) 		0.0159
(0.0735) 		0.0106
(0.0585) 		0.0166
(0.075) 		0.03
(0.107) 		0.487
(0.596) 		0.227
(0.358) 		0.00791
(0.0495)
FAM98C 8 (2%) 385 0.00496
(0.0383) 		0.093
(0.207) 		0.226
(0.357) 		0.163
(0.292) 		0.0217
(0.0884) 		0.00281
(0.0283) 		0.0107
(0.0588) 		0.0322
(0.111) 		0.847
(0.893) 		0.407
(0.525)
NID2 19 (5%) 374 9e-05
(0.00368) 		0.0177
(0.0781) 		0.393
(0.514) 		0.021
(0.0866) 		0.00423
(0.0349) 		0.157
(0.284) 		0.0266
(0.1) 		0.07
(0.175) 		0.229
(0.36) 		0.166
(0.295)
IDE 11 (3%) 382 0.0123
(0.0638) 		0.0291
(0.105) 		0.00714
(0.0468) 		0.00032
(0.00794) 		0.477
(0.589) 		0.00945
(0.0552) 		0.765
(0.829) 		0.917
(0.951) 		0.476
(0.588) 		0.0745
(0.182)
NOS3 15 (4%) 378 0.0809
(0.191) 		0.139
(0.265) 		0.0406
(0.127) 		0.0416
(0.128) 		0.0467
(0.138) 		0.00746
(0.048) 		0.0371
(0.121) 		0.374
(0.498) 		0.177
(0.305) 		0.121
(0.244)
UGP2 9 (2%) 384 0.00087
(0.0144) 		0.0466
(0.137) 		0.257
(0.387) 		0.0153
(0.0722) 		0.00173
(0.0213) 		0.00495
(0.0383) 		0.136
(0.261) 		0.21
(0.342) 		0.384
(0.507) 		0.344
(0.471)
ABCB6 12 (3%) 381 0.00024
(0.00678) 		0.18
(0.31) 		0.161
(0.289) 		0.485
(0.595) 		0.101
(0.218) 		0.854
(0.899) 		0.00089
(0.0145) 		0.0384
(0.123) 		0.0149
(0.071) 		0.00502
(0.0387)
TNKS1BP1 27 (7%) 366 0.0132
(0.0662) 		0.0096
(0.0555) 		0.147
(0.274) 		0.0041
(0.0343) 		0.027
(0.101) 		0.169
(0.299) 		0.0581
(0.157) 		0.122
(0.245) 		0.209
(0.341) 		0.0147
(0.0702)
ERBB2 19 (5%) 374 0.00464
(0.0368) 		0.00246
(0.0259) 		0.689
(0.765) 		0.572
(0.67) 		0.0159
(0.0734) 		0.658
(0.738) 		0.0052
(0.0395) 		0.132
(0.257) 		0.0938
(0.208) 		0.00792
(0.0495)
FAM70B 13 (3%) 380 0.00187
(0.0222) 		0.0159
(0.0734) 		0.562
(0.662) 		0.0988
(0.215) 		0.0375
(0.122) 		0.0226
(0.0904) 		0.134
(0.259) 		0.0439
(0.133) 		0.128
(0.253) 		0.339
(0.467)
EHMT2 19 (5%) 374 0.42
(0.537) 		0.506
(0.612) 		0.00357
(0.0324) 		0.0459
(0.136) 		0.0346
(0.116) 		0.138
(0.264) 		0.566
(0.665) 		0.0422
(0.13) 		0.106
(0.225) 		0.0175
(0.0777)
SLC12A7 24 (6%) 369 0.00041
(0.00925) 		0.00533
(0.04) 		0.0339
(0.114) 		0.00657
(0.0447) 		0.0946
(0.209) 		0.051
(0.145) 		0.182
(0.311) 		0.396
(0.516) 		0.368
(0.493) 		0.00256
(0.0266)
KYNU 12 (3%) 381 0.0288
(0.105) 		0.761
(0.826) 		0.175
(0.303) 		0.305
(0.436) 		0.0341
(0.114) 		0.0103
(0.0576) 		0.00682
(0.0457) 		0.524
(0.628) 		0.0464
(0.137) 		0.0808
(0.191)
UHRF1BP1 19 (5%) 374 1e-05
(0.000978) 		0.0179
(0.0787) 		0.231
(0.362) 		0.0259
(0.0988) 		0.149
(0.276) 		0.253
(0.384) 		0.103
(0.221) 		0.0696
(0.175) 		0.00051
(0.0108) 		0.019
(0.0814)
DLAT 8 (2%) 385 0.00209
(0.0237) 		0.0299
(0.107) 		0.451
(0.567) 		0.00047
(0.0102) 		0.524
(0.628) 		0.134
(0.26) 		0.0379
(0.122) 		0.488
(0.597) 		0.0382
(0.123) 		0.235
(0.366)
SGOL2 13 (3%) 380 0.0002
(0.00604) 		0.0103
(0.0573) 		0.092
(0.206) 		0.0129
(0.0654) 		0.042
(0.129) 		0.0445
(0.134) 		0.0707
(0.176) 		0.398
(0.518) 		0.381
(0.505) 		0.324
(0.453)
IFRD1 10 (3%) 383 0.0138
(0.0677) 		0.0181
(0.0791) 		0.124
(0.248) 		0.0663
(0.17) 		0.154
(0.281) 		0.0892
(0.202) 		0.00069
(0.0127) 		0.0131
(0.0658) 		0.00742
(0.0479) 		0.194
(0.325)
SF3B2 16 (4%) 377 0.00127
(0.018) 		0.216
(0.348) 		0.142
(0.268) 		0.0491
(0.142) 		0.00967
(0.0558) 		0.209
(0.341) 		0.116
(0.237) 		0.112
(0.232) 		0.0267
(0.101) 		0.05
(0.143)
ALDH3A1 12 (3%) 381 0.0472
(0.138) 		0.154
(0.281) 		0.0381
(0.123) 		0.017
(0.0763) 		0.00896
(0.0534) 		0.0182
(0.0793) 		0.169
(0.299) 		0.19
(0.321) 		0.434
(0.551) 		0.114
(0.234)
MLH1 8 (2%) 385 0.0127
(0.0648) 		0.173
(0.301) 		0.0303
(0.107) 		0.01
(0.0566) 		0.257
(0.387) 		0.625
(0.713) 		0.00982
(0.0561) 		0.172
(0.3) 		0.118
(0.239) 		0.0423
(0.13)
C10ORF71 12 (3%) 381 0.0294
(0.106) 		0.192
(0.323) 		0.135
(0.261) 		0.546
(0.647) 		0.0339
(0.114) 		0.00543
(0.0405) 		0.00851
(0.0516) 		0.315
(0.445) 		0.0494
(0.142) 		0.159
(0.287)
RASAL2 19 (5%) 374 0.00043
(0.00957) 		0.0207
(0.0857) 		0.491
(0.599) 		0.589
(0.682) 		0.00089
(0.0145) 		0.0185
(0.08) 		0.377
(0.501) 		0.0839
(0.195) 		0.016
(0.0737) 		0.101
(0.217)
SH3RF1 12 (3%) 381 0.00085
(0.0142) 		0.0159
(0.0735) 		0.63
(0.716) 		0.0141
(0.0685) 		0.00024
(0.00678) 		0.022
(0.089) 		0.0997
(0.216) 		0.0856
(0.198) 		0.172
(0.3) 		0.142
(0.268)
RDBP 10 (3%) 383 0.0239
(0.0936) 		0.00328
(0.0307) 		0.123
(0.247) 		0.0442
(0.133) 		0.00293
(0.029) 		0.0311
(0.108) 		0.348
(0.475) 		0.0773
(0.186) 		0.597
(0.69) 		0.0652
(0.168)
SMARCB1 13 (3%) 380 0.00523
(0.0396) 		0.00299
(0.0291) 		0.0257
(0.0983) 		0.186
(0.316) 		0.186
(0.316) 		0.023
(0.0911) 		0.135
(0.261) 		0.0431
(0.131) 		0.795
(0.852) 		0.238
(0.369)
ITGA6 9 (2%) 384 0.0497
(0.143) 		0.415
(0.533) 		0.125
(0.249) 		0.00065
(0.0123) 		0.00189
(0.0223) 		0.0154
(0.0723) 		0.0268
(0.101) 		0.0985
(0.214) 		0.215
(0.346) 		0.0699
(0.175)
CSF3R 12 (3%) 381 0.0478
(0.139) 		0.00643
(0.0442) 		0.0956
(0.21) 		0.36
(0.486) 		0.0293
(0.106) 		0.00405
(0.0341) 		0.0152
(0.0719) 		0.519
(0.625) 		0.176
(0.304) 		0.308
(0.438)
MAP3K1 15 (4%) 378 1e-05
(0.000978) 		0.0626
(0.164) 		0.0385
(0.123) 		0.0316
(0.109) 		0.246
(0.378) 		0.0862
(0.199) 		0.0267
(0.101) 		0.0184
(0.0798) 		0.291
(0.421) 		0.118
(0.24)
DNAJA1 9 (2%) 384 0.00062
(0.012) 		0.0267
(0.101) 		0.0884
(0.201) 		0.0599
(0.16) 		0.175
(0.303) 		0.0367
(0.12) 		0.00558
(0.0411) 		0.342
(0.469) 		0.339
(0.467) 		0.0423
(0.13)
C11ORF80 6 (2%) 387 0.351
(0.477) 		0.0202
(0.0847) 		0.00777
(0.0491) 		0.0107
(0.059) 		0.00948
(0.0552) 		8e-05
(0.00338) 		0.508
(0.615) 		0.138
(0.264) 		0.457
(0.571) 		0.223
(0.354)
SORBS2 21 (5%) 372 0.0007
(0.0127) 		0.00135
(0.0186) 		0.0598
(0.16) 		0.00933
(0.0548) 		0.323
(0.452) 		0.0722
(0.178) 		0.0266
(0.101) 		0.0619
(0.163) 		0.0229
(0.0909) 		0.0799
(0.19)
PTOV1 11 (3%) 382 0.011
(0.0596) 		0.0156
(0.0729) 		0.506
(0.613) 		0.0142
(0.0688) 		0.00732
(0.0475) 		0.00133
(0.0184) 		0.423
(0.54) 		0.0859
(0.198) 		0.437
(0.553) 		0.146
(0.273)
BRCA1 15 (4%) 378 0.0381
(0.123) 		0.069
(0.174) 		0.0189
(0.0811) 		0.00656
(0.0447) 		0.00635
(0.0438) 		0.00351
(0.0322) 		0.209
(0.341) 		0.37
(0.495) 		0.101
(0.217) 		0.187
(0.317)
RP1L1 31 (8%) 362 0.079
(0.188) 		0.00699
(0.0463) 		0.0552
(0.153) 		0.0184
(0.0798) 		0.0355
(0.117) 		0.0415
(0.128) 		0.121
(0.244) 		0.0487
(0.141) 		0.112
(0.232) 		0.69
(0.766)
DDHD1 13 (3%) 380 0.00178
(0.0217) 		0.0223
(0.09) 		0.189
(0.32) 		0.00163
(0.0207) 		0.114
(0.234) 		0.156
(0.282) 		0.0321
(0.11) 		0.131
(0.256) 		0.0155
(0.0726) 		0.198
(0.328)
KCNQ1 6 (2%) 387 0.00983
(0.0562) 		0.136
(0.261) 		0.0398
(0.126) 		0.0006
(0.0119) 		0.0119
(0.0626) 		0.0326
(0.112) 		0.159
(0.287) 		0.632
(0.718) 		0.185
(0.315) 		0.524
(0.628)
BMPR2 19 (5%) 374 0.0001
(0.00389) 		0.0161
(0.0739) 		0.212
(0.344) 		0.14
(0.267) 		0.014
(0.0684) 		6e-05
(0.00292) 		0.0308
(0.108) 		0.0883
(0.201) 		0.121
(0.244) 		0.115
(0.235)
GPR1 6 (2%) 387 0.207
(0.339) 		0.0254
(0.0974) 		0.53
(0.634) 		0.00886
(0.0532) 		0.0161
(0.0739) 		0.0332
(0.113) 		0.0344
(0.115) 		1
(1.00) 		0.738
(0.804) 		0.168
(0.298)
KCTD9 11 (3%) 382 0.00637
(0.0439) 		0.0318
(0.11) 		0.975
(1.00) 		0.663
(0.742) 		0.233
(0.364) 		0.0247
(0.0957) 		0.0417
(0.129) 		0.0869
(0.199) 		0.0492
(0.142) 		0.102
(0.219)
PLK2 8 (2%) 385 0.0787
(0.188) 		0.0161
(0.0739) 		0.0551
(0.153) 		0.00636
(0.0439) 		0.0485
(0.141) 		0.00239
(0.0253) 		0.0214
(0.0877) 		0.261
(0.391) 		0.581
(0.677) 		0.0587
(0.158)
CIB3 5 (1%) 388 0.0625
(0.164) 		0.175
(0.303) 		0.0257
(0.0984) 		0.0317
(0.11) 		0.0158
(0.0732) 		0.0394
(0.125) 		0.0172
(0.0767) 		0.247
(0.378) 		0.558
(0.658) 		0.21
(0.343)
CUL1 20 (5%) 373 0.00892
(0.0533) 		0.0661
(0.17) 		0.0172
(0.0767) 		0.0436
(0.132) 		0.214
(0.346) 		0.0128
(0.0653) 		0.164
(0.293) 		0.0831
(0.194) 		0.567
(0.666) 		0.00717
(0.0469)
TRIP10 9 (2%) 384 0.0709
(0.176) 		0.0165
(0.075) 		0.118
(0.24) 		0.0157
(0.073) 		0.00284
(0.0284) 		0.0927
(0.207) 		0.0132
(0.0662) 		0.903
(0.939) 		0.336
(0.465) 		0.0366
(0.12)
CHD3 28 (7%) 365 0.0008
(0.0136) 		0.101
(0.218) 		0.00285
(0.0285) 		0.00221
(0.0243) 		0.0629
(0.165) 		0.00119
(0.0174) 		0.00096
(0.0152) 		0.402
(0.52) 		0.384
(0.507) 		0.306
(0.436)
ZNF687 11 (3%) 382 0.00012
(0.00438) 		0.0558
(0.154) 		0.656
(0.736) 		0.13
(0.255) 		0.0133
(0.0663) 		0.0494
(0.142) 		0.0101
(0.0569) 		0.0603
(0.161) 		0.346
(0.473) 		0.0405
(0.127)
ADAM7 16 (4%) 377 0.0006
(0.0119) 		0.00034
(0.00823) 		0.381
(0.504) 		0.00021
(0.00623) 		0.00975
(0.0559) 		0.00776
(0.0491) 		0.116
(0.237) 		0.537
(0.64) 		0.222
(0.353) 		0.429
(0.546)
SMAD2 9 (2%) 384 0.0485
(0.141) 		0.0409
(0.127) 		0.351
(0.477) 		0.222
(0.354) 		0.0295
(0.106) 		0.00156
(0.02) 		0.134
(0.259) 		0.0285
(0.104) 		0.735
(0.803) 		0.408
(0.526)
RYR2 77 (20%) 316 0.00679
(0.0455) 		0.00125
(0.0179) 		0.011
(0.0596) 		2e-05
(0.00161) 		0.0802
(0.19) 		0.0079
(0.0495) 		0.0554
(0.153) 		0.0881
(0.201) 		0.178
(0.307) 		0.0675
(0.172)
PLEKHH3 10 (3%) 383 0.0023
(0.0248) 		0.337
(0.466) 		0.0623
(0.164) 		0.213
(0.345) 		0.00212
(0.0239) 		0.208
(0.34) 		0.00927
(0.0546) 		0.373
(0.497) 		0.00261
(0.027) 		0.0403
(0.127)
NFAT5 12 (3%) 381 0.0478
(0.139) 		0.0424
(0.13) 		0.339
(0.467) 		0.119
(0.241) 		0.0545
(0.151) 		0.0189
(0.0811) 		0.0155
(0.0727) 		0.0645
(0.167) 		0.0159
(0.0734) 		0.285
(0.416)
MTSS1L 10 (3%) 383 0.002
(0.0231) 		0.00813
(0.0501) 		0.0444
(0.133) 		0.0131
(0.0659) 		0.052
(0.147) 		0.012
(0.0628) 		0.303
(0.433) 		0.754
(0.819) 		0.116
(0.236) 		0.2
(0.33)
MON2 16 (4%) 377 1e-05
(0.000978) 		0.0495
(0.142) 		0.487
(0.597) 		2e-05
(0.00161) 		0.0142
(0.0688) 		0.194
(0.325) 		0.00017
(0.00544) 		0.13
(0.255) 		0.173
(0.301) 		0.0642
(0.167)
AKD1 15 (4%) 378 0.00074
(0.0131) 		0.0399
(0.126) 		0.0876
(0.2) 		0.0025
(0.0262) 		0.00812
(0.0501) 		0.105
(0.223) 		0.04
(0.126) 		0.21
(0.342) 		0.704
(0.777) 		0.169
(0.298)
GON4L 12 (3%) 381 0.00024
(0.00678) 		0.0005
(0.0106) 		0.0537
(0.15) 		0.00424
(0.0349) 		0.0003
(0.00776) 		0.00182
(0.0219) 		0.213
(0.345) 		0.0641
(0.167) 		0.0672
(0.172) 		0.29
(0.42)
ZNF7 9 (2%) 384 0.00608
(0.0429) 		0.089
(0.202) 		0.251
(0.383) 		0.131
(0.256) 		0.0208
(0.086) 		0.243
(0.375) 		0.0133
(0.0664) 		0.0284
(0.104) 		0.16
(0.288) 		0.0132
(0.0662)
HOXA1 10 (3%) 383 0.0137
(0.0673) 		0.381
(0.504) 		0.663
(0.742) 		0.131
(0.256) 		0.0363
(0.119) 		0.15
(0.277) 		0.0123
(0.0638) 		1
(1.00) 		0.00179
(0.0217) 		0.0249
(0.0961)
EEA1 14 (4%) 379 0.0101
(0.0569) 		0.00505
(0.0387) 		0.34
(0.468) 		0.0714
(0.177) 		0.0378
(0.122) 		0.0226
(0.0905) 		0.0745
(0.182) 		0.0292
(0.105) 		0.132
(0.256) 		0.305
(0.436)
UACA 14 (4%) 379 0.0144
(0.0693) 		0.0107
(0.0589) 		0.383
(0.506) 		8e-05
(0.00338) 		0.0674
(0.172) 		9e-05
(0.00368) 		0.0004
(0.00912) 		0.0958
(0.21) 		0.173
(0.301) 		0.15
(0.277)
FAM167A 8 (2%) 385 0.00466
(0.0369) 		0.0125
(0.0643) 		0.212
(0.344) 		0.00407
(0.0342) 		0.136
(0.261) 		0.0167
(0.0753) 		0.117
(0.238) 		0.261
(0.391) 		0.339
(0.467) 		0.0133
(0.0664)
EPB41L4B 18 (5%) 375 0.00014
(0.00477) 		0.00632
(0.0438) 		0.601
(0.693) 		8e-05
(0.00338) 		0.00233
(0.025) 		0.0611
(0.162) 		0.0212
(0.0872) 		0.348
(0.475) 		0.701
(0.775) 		0.319
(0.448)
CSNK1G1 7 (2%) 386 0.111
(0.231) 		0.0208
(0.086) 		0.41
(0.528) 		0.0506
(0.144) 		0.0738
(0.181) 		0.00516
(0.0393) 		0.0106
(0.0586) 		0.387
(0.509) 		0.0273
(0.102) 		0.0001
(0.00389)
SLC30A3 9 (2%) 384 0.0225
(0.0903) 		0.288
(0.418) 		0.029
(0.105) 		0.00014
(0.00477) 		0.583
(0.679) 		0.0397
(0.125) 		0.253
(0.384) 		0.38
(0.504) 		0.658
(0.738) 		0.0122
(0.0634)
GFOD1 13 (3%) 380 0.0122
(0.0635) 		0.192
(0.323) 		0.0297
(0.106) 		0.00616
(0.0432) 		0.559
(0.659) 		0.328
(0.458) 		0.00028
(0.00747) 		0.402
(0.52) 		0.157
(0.284) 		0.0454
(0.135)
SLC38A1 7 (2%) 386 0.057
(0.155) 		0.175
(0.303) 		0.0461
(0.136) 		0.00133
(0.0184) 		0.0221
(0.0894) 		0.0958
(0.21) 		0.00223
(0.0245) 		0.512
(0.618) 		0.463
(0.575) 		0.0433
(0.132)
SLC45A4 19 (5%) 374 0.00046
(0.01) 		0.00045
(0.00985) 		0.127
(0.252) 		0.00243
(0.0257) 		0.00103
(0.016) 		0.129
(0.254) 		0.1
(0.217) 		0.0711
(0.177) 		0.0155
(0.0727) 		0.506
(0.612)
TMEM63A 13 (3%) 380 0.00164
(0.0207) 		0.0663
(0.17) 		0.142
(0.268) 		0.00669
(0.0452) 		0.0395
(0.125) 		0.162
(0.29) 		0.0183
(0.0795) 		0.044
(0.133) 		1
(1.00) 		0.315
(0.445)
KIAA1217 27 (7%) 366 0.0194
(0.0823) 		0.0117
(0.0619) 		0.0817
(0.192) 		0.00246
(0.0259) 		0.005
(0.0386) 		0.0016
(0.0204) 		0.245
(0.376) 		0.318
(0.447) 		0.0543
(0.151) 		0.223
(0.354)
TJP2 14 (4%) 379 0.033
(0.112) 		0.019
(0.0813) 		0.114
(0.235) 		0.045
(0.134) 		0.0116
(0.0618) 		0.292
(0.422) 		0.0529
(0.149) 		0.0936
(0.208) 		0.284
(0.415) 		0.0108
(0.0591)
TESK1 12 (3%) 381 0.00018
(0.00559) 		0.00028
(0.00747) 		0.517
(0.623) 		0.044
(0.133) 		0.018
(0.0789) 		0.171
(0.299) 		0.138
(0.264) 		0.0863
(0.199) 		0.00032
(0.00794) 		0.0697
(0.175)
RBM16 13 (3%) 380 0.0273
(0.102) 		0.863
(0.907) 		0.252
(0.383) 		0.00019
(0.00581) 		0.0767
(0.185) 		0.0414
(0.128) 		0.327
(0.457) 		0.0209
(0.0862) 		0.73
(0.798) 		0.0454
(0.135)
PTEN 30 (8%) 363 0.126
(0.25) 		0.00151
(0.0197) 		0.0218
(0.0888) 		0.0607
(0.161) 		0.264
(0.394) 		0.703
(0.777) 		0.0216
(0.0883) 		0.0208
(0.0861) 		0.103
(0.221) 		0.119
(0.241)
ARID4A 22 (6%) 371 0.00069
(0.0127) 		0.00597
(0.0427) 		0.618
(0.708) 		0.102
(0.219) 		0.0446
(0.134) 		0.132
(0.257) 		0.0398
(0.126) 		0.42
(0.537) 		0.0689
(0.174) 		0.128
(0.252)
TENC1 20 (5%) 373 0.00246
(0.0259) 		0.0864
(0.199) 		0.206
(0.338) 		0.00546
(0.0407) 		0.0445
(0.134) 		0.00061
(0.0119) 		0.868
(0.911) 		0.295
(0.425) 		0.129
(0.254) 		0.0591
(0.159)
MTG1 9 (2%) 384 0.00204
(0.0234) 		0.0429
(0.131) 		0.327
(0.456) 		0.0543
(0.151) 		0.436
(0.552) 		0.0138
(0.0677) 		0.396
(0.516) 		0.904
(0.94) 		0.579
(0.676) 		0.0267
(0.101)
APC 48 (12%) 345 0.116
(0.237) 		0.408
(0.526) 		0.145
(0.272) 		5e-05
(0.00258) 		0.167
(0.296) 		0.0128
(0.0653) 		5e-05
(0.00258) 		0.131
(0.256) 		0.00128
(0.0181) 		0.117
(0.238)
SLC27A3 9 (2%) 384 0.0478
(0.139) 		0.104
(0.222) 		0.395
(0.515) 		0.0287
(0.105) 		0.00746
(0.048) 		0.00622
(0.0434) 		0.137
(0.262) 		0.171
(0.3) 		0.878
(0.918) 		0.154
(0.281)
NLK 14 (4%) 379 0.00772
(0.049) 		0.0453
(0.135) 		0.356
(0.481) 		0.00143
(0.0192) 		0.933
(0.965) 		0.254
(0.384) 		0.384
(0.507) 		0.0521
(0.147) 		0.0282
(0.104) 		0.111
(0.231)
PRSS36 16 (4%) 377 0.00375
(0.0333) 		0.0108
(0.059) 		0.692
(0.767) 		0.174
(0.302) 		0.0967
(0.212) 		0.00633
(0.0438) 		0.00619
(0.0433) 		0.479
(0.59) 		0.0928
(0.207) 		0.399
(0.518)
SOX7 19 (5%) 374 0.00202
(0.0232) 		0.197
(0.327) 		0.00419
(0.0348) 		0.45
(0.566) 		0.359
(0.485) 		0.106
(0.225) 		0.0106
(0.0585) 		0.0393
(0.125) 		0.131
(0.256) 		0.292
(0.422)
EPB49 13 (3%) 380 0.00445
(0.0358) 		0.0797
(0.189) 		0.125
(0.249) 		0.0126
(0.0645) 		0.0342
(0.115) 		0.0781
(0.187) 		0.0713
(0.177) 		0.29
(0.42) 		0.382
(0.505) 		0.00056
(0.0113)
RASA1 19 (5%) 374 0.0269
(0.101) 		0.634
(0.719) 		0.0624
(0.164) 		0.241
(0.373) 		0.054
(0.15) 		0.00408
(0.0343) 		0.00586
(0.0423) 		0.199
(0.33) 		0.191
(0.321) 		0.0165
(0.075)
WNT1 10 (3%) 383 0.0923
(0.206) 		0.0739
(0.181) 		0.252
(0.383) 		1
(1.00) 		0.272
(0.403) 		0.00667
(0.0452) 		0.0149
(0.0709) 		0.28
(0.411) 		0.0376
(0.122) 		0.0397
(0.125)
IRF2 19 (5%) 374 0.00094
(0.0151) 		0.363
(0.488) 		0.0859
(0.198) 		0.0136
(0.067) 		0.0547
(0.152) 		0.101
(0.218) 		0.00441
(0.0357) 		0.00103
(0.016) 		0.122
(0.245) 		0.0953
(0.21)
ADAM30 16 (4%) 377 0.0122
(0.0635) 		0.08
(0.19) 		0.293
(0.423) 		0.00633
(0.0438) 		0.142
(0.268) 		0.0302
(0.107) 		0.038
(0.123) 		0.0871
(0.199) 		0.533
(0.636) 		0.273
(0.404)
B3GNT5 11 (3%) 382 0.0532
(0.149) 		0.23
(0.361) 		0.534
(0.637) 		0.26
(0.389) 		0.027
(0.101) 		0.106
(0.225) 		0.00357
(0.0324) 		0.0343
(0.115) 		0.382
(0.505) 		0.028
(0.103)
ART1 8 (2%) 385 0.0219
(0.0889) 		0.341
(0.469) 		0.0782
(0.187) 		0.0596
(0.16) 		0.158
(0.285) 		0.0886
(0.201) 		0.00488
(0.038) 		0.259
(0.389) 		0.0229
(0.091) 		0.0377
(0.122)
WNK4 24 (6%) 369 2e-05
(0.00161) 		0.00472
(0.0372) 		0.0145
(0.0696) 		0.0217
(0.0885) 		0.417
(0.534) 		0.212
(0.344) 		0.0705
(0.176) 		0.264
(0.394) 		0.0683
(0.173) 		0.21
(0.342)
ABCC4 19 (5%) 374 0.0031
(0.0298) 		0.0791
(0.188) 		0.143
(0.269) 		0.124
(0.248) 		0.0582
(0.157) 		0.0451
(0.135) 		0.0138
(0.0677) 		0.361
(0.486) 		0.0157
(0.073) 		0.145
(0.272)
PRRG3 8 (2%) 385 0.0738
(0.181) 		0.216
(0.348) 		0.353
(0.48) 		0.0438
(0.132) 		0.0037
(0.0331) 		0.342
(0.469) 		0.0439
(0.133) 		0.172
(0.3) 		0.0184
(0.0798) 		0.0532
(0.149)
FAHD2B 9 (2%) 384 0.00326
(0.0307) 		0.043
(0.131) 		0.0652
(0.168) 		0.00427
(0.0351) 		0.0994
(0.216) 		0.0184
(0.0798) 		0.163
(0.292) 		0.171
(0.299) 		0.878
(0.919) 		0.28
(0.411)
KLC2 14 (4%) 379 0.0142
(0.0688) 		0.0139
(0.0678) 		0.392
(0.513) 		0.175
(0.303) 		0.0381
(0.123) 		0.05
(0.143) 		0.221
(0.352) 		0.301
(0.432) 		0.016
(0.0738) 		0.158
(0.285)
GRINA 9 (2%) 384 0.00421
(0.0349) 		0.154
(0.281) 		0.258
(0.388) 		0.0376
(0.122) 		0.0313
(0.109) 		0.0395
(0.125) 		0.775
(0.836) 		0.0982
(0.214) 		0.155
(0.281) 		0.342
(0.47)
SETDB2 12 (3%) 381 0.136
(0.261) 		0.0901
(0.203) 		0.00878
(0.0528) 		0.00925
(0.0545) 		0.0735
(0.181) 		0.447
(0.562) 		0.00164
(0.0207) 		0.0046
(0.0366) 		0.657
(0.737) 		0.196
(0.326)
LTBP3 17 (4%) 376 2e-05
(0.00161) 		0.0153
(0.0721) 		0.294
(0.423) 		0.568
(0.667) 		0.0523
(0.147) 		0.0257
(0.0984) 		0.0093
(0.0547) 		0.416
(0.534) 		0.142
(0.268) 		0.228
(0.359)
C13ORF33 7 (2%) 386 0.149
(0.275) 		0.0119
(0.0626) 		0.453
(0.568) 		0.00192
(0.0225) 		0.0316
(0.11) 		0.00051
(0.0108) 		0.837
(0.885) 		0.215
(0.346) 		0.387
(0.509) 		0.427
(0.544)
FBXO21 15 (4%) 378 0.0217
(0.0884) 		0.657
(0.738) 		0.857
(0.902) 		0.0245
(0.0952) 		0.0265
(0.1) 		0.0106
(0.0586) 		0.0768
(0.185) 		0.822
(0.874) 		0.739
(0.805) 		0.948
(0.978)
NIN 23 (6%) 370 0.107
(0.226) 		0.0896
(0.202) 		0.0485
(0.141) 		0.0889
(0.202) 		0.091
(0.205) 		0.0666
(0.17) 		0.00564
(0.0414) 		0.00521
(0.0395) 		0.105
(0.223) 		0.00909
(0.054)
AQP8 13 (3%) 380 0.0245
(0.0952) 		0.0409
(0.127) 		0.397
(0.517) 		0.304
(0.435) 		0.205
(0.337) 		0.00065
(0.0123) 		8e-05
(0.00338) 		0.291
(0.421) 		0.576
(0.674) 		0.203
(0.335)
ZMYM3 15 (4%) 378 0.00144
(0.0193) 		0.00182
(0.0219) 		0.427
(0.544) 		0.23
(0.361) 		0.415
(0.533) 		0.311
(0.441) 		0.0097
(0.0558) 		0.161
(0.289) 		0.0624
(0.164) 		0.00376
(0.0333)
EFNB3 13 (3%) 380 0.221
(0.353) 		0.00443
(0.0358) 		0.672
(0.75) 		0.00496
(0.0383) 		0.0448
(0.134) 		0.0799
(0.19) 		0.17
(0.299) 		0.399
(0.518) 		0.0838
(0.195) 		0.0391
(0.124)
CUL2 9 (2%) 384 0.0302
(0.107) 		0.0279
(0.103) 		0.564
(0.663) 		0.00432
(0.0353) 		0.168
(0.298) 		0.018
(0.079) 		0.408
(0.526) 		0.097
(0.212) 		1
(1.00) 		0.589
(0.682)
KLHDC5 10 (3%) 383 0.0136
(0.067) 		0.398
(0.518) 		0.181
(0.311) 		0.00629
(0.0437) 		0.00605
(0.0429) 		0.107
(0.226) 		0.218
(0.349) 		0.619
(0.708) 		0.047
(0.138) 		0.613
(0.703)
ARAF 12 (3%) 381 0.00786
(0.0493) 		0.0818
(0.192) 		0.255
(0.385) 		0.0163
(0.0744) 		0.0275
(0.102) 		0.305
(0.436) 		0.0382
(0.123) 		0.207
(0.339) 		0.068
(0.173) 		0.157
(0.284)
CNBD1 18 (5%) 375 0.263
(0.393) 		0.0108
(0.0593) 		0.264
(0.394) 		0.596
(0.689) 		0.0109
(0.0594) 		0.185
(0.315) 		0.00774
(0.0491) 		0.182
(0.312) 		0.19
(0.321) 		0.0311
(0.108)
FILIP1L 21 (5%) 372 0.0208
(0.086) 		0.0142
(0.0687) 		0.0337
(0.114) 		0.00012
(0.00438) 		0.0736
(0.181) 		0.0762
(0.185) 		0.221
(0.353) 		0.111
(0.231) 		0.613
(0.704) 		0.148
(0.275)
KNTC1 20 (5%) 373 0.476
(0.588) 		0.447
(0.562) 		0.0432
(0.131) 		0.0168
(0.0757) 		6e-05
(0.00292) 		0.0333
(0.113) 		0.0529
(0.149) 		0.0945
(0.209) 		0.141
(0.267) 		0.199
(0.33)
GAS6 16 (4%) 377 0.00377
(0.0333) 		0.00566
(0.0414) 		0.727
(0.796) 		0.135
(0.26) 		0.0684
(0.173) 		0.108
(0.226) 		0.00954
(0.0554) 		0.138
(0.264) 		0.227
(0.359) 		0.0404
(0.127)
BEND3 12 (3%) 381 0.00887
(0.0532) 		0.0188
(0.081) 		0.0404
(0.127) 		0.298
(0.428) 		0.12
(0.242) 		0.328
(0.458) 		0.00102
(0.0159) 		0.316
(0.446) 		0.381
(0.504) 		0.111
(0.232)
KIAA0100 26 (7%) 367 6e-05
(0.00292) 		0.0022
(0.0243) 		0.719
(0.789) 		0.00901
(0.0536) 		0.243
(0.375) 		0.0962
(0.211) 		0.00311
(0.0298) 		0.161
(0.289) 		0.708
(0.78) 		0.161
(0.289)
FAM82A1 5 (1%) 388 0.0298
(0.107) 		0.738
(0.804) 		0.0204
(0.0851) 		0.76
(0.825) 		0.275
(0.406) 		0.397
(0.516) 		0.013
(0.0656) 		0.833
(0.882) 		0.0135
(0.0669) 		0.149
(0.276)
ABCA6 15 (4%) 378 0.00138
(0.0188) 		0.237
(0.368) 		0.205
(0.337) 		0.00664
(0.045) 		0.199
(0.329) 		0.0243
(0.0947) 		0.0417
(0.129) 		0.162
(0.29) 		0.329
(0.459) 		0.322
(0.452)
C6ORF165 16 (4%) 377 0.00582
(0.0421) 		0.226
(0.357) 		0.0558
(0.154) 		0.00695
(0.0461) 		0.195
(0.326) 		0.0362
(0.119) 		0.15
(0.277) 		0.209
(0.342) 		0.144
(0.27) 		0.0428
(0.131)
HSPG2 62 (16%) 331 0.00395
(0.0337) 		0.0221
(0.0893) 		0.053
(0.149) 		0.0147
(0.0702) 		0.123
(0.246) 		0.222
(0.354) 		0.354
(0.48) 		0.0265
(0.1) 		0.777
(0.838) 		0.154
(0.281)
MARVELD3 12 (3%) 381 0.219
(0.351) 		0.00817
(0.0502) 		0.777
(0.838) 		0.0305
(0.108) 		0.0734
(0.18) 		0.306
(0.436) 		0.0503
(0.144) 		0.672
(0.75) 		0.0341
(0.114) 		0.00033
(0.00805)
ANKRD20A4 7 (2%) 386 0.37
(0.495) 		0.0302
(0.107) 		0.45
(0.565) 		0.0301
(0.107) 		0.0092
(0.0544) 		0.0107
(0.0588) 		0.188
(0.319) 		0.215
(0.347) 		0.578
(0.675) 		0.426
(0.543)
TM6SF1 8 (2%) 385 0.00214
(0.024) 		0.0399
(0.126) 		0.27
(0.401) 		0.0545
(0.151) 		0.0038
(0.0333) 		0.134
(0.259) 		0.191
(0.321) 		0.227
(0.359) 		0.00644
(0.0442) 		0.455
(0.569)
CLMN 14 (4%) 379 0.00199
(0.023) 		0.0122
(0.0637) 		0.234
(0.365) 		0.00775
(0.0491) 		0.101
(0.217) 		0.00424
(0.0349) 		0.145
(0.271) 		0.0954
(0.21) 		0.693
(0.768) 		0.0638
(0.166)
MIA2 10 (3%) 383 0.105
(0.223) 		0.0362
(0.119) 		0.0245
(0.0952) 		5e-05
(0.00258) 		0.129
(0.254) 		0.0333
(0.113) 		0.108
(0.227) 		0.335
(0.464) 		0.0882
(0.201) 		0.15
(0.277)
HTR7 14 (4%) 379 0.033
(0.112) 		0.043
(0.131) 		0.119
(0.241) 		0.00812
(0.0501) 		0.0463
(0.137) 		0.0536
(0.15) 		0.473
(0.585) 		0.317
(0.446) 		0.635
(0.719) 		0.691
(0.766)
OBSCN 90 (23%) 303 0.00036
(0.00857) 		0.00697
(0.0462) 		0.0637
(0.166) 		0.00187
(0.0222) 		0.223
(0.354) 		0.0741
(0.181) 		0.211
(0.343) 		0.0559
(0.154) 		0.363
(0.488) 		0.00361
(0.0326)
KIAA1522 12 (3%) 381 0.0005
(0.0106) 		0.0386
(0.123) 		0.00973
(0.0559) 		0.013
(0.0656) 		0.0744
(0.182) 		0.104
(0.221) 		0.725
(0.794) 		0.52
(0.626) 		0.0837
(0.195) 		0.0965
(0.211)
CD93 18 (5%) 375 0.0151
(0.0713) 		0.00568
(0.0415) 		0.128
(0.253) 		0.0102
(0.0572) 		0.134
(0.26) 		0.0124
(0.0638) 		0.107
(0.226) 		0.247
(0.379) 		0.177
(0.305) 		0.28
(0.412)
DPP7 9 (2%) 384 0.0009
(0.0146) 		0.0123
(0.0638) 		0.847
(0.893) 		0.672
(0.75) 		0.0381
(0.123) 		0.00408
(0.0343) 		0.169
(0.299) 		0.588
(0.682) 		0.659
(0.739) 		0.238
(0.37)
HIST1H1A 9 (2%) 384 0.00444
(0.0358) 		0.355
(0.481) 		0.0177
(0.0781) 		0.0434
(0.132) 		0.218
(0.349) 		0.558
(0.658) 		0.109
(0.229) 		0.588
(0.682) 		0.0468
(0.138) 		0.494
(0.602)
CTNNB1 24 (6%) 369 0.00179
(0.0217) 		0.0605
(0.161) 		0.858
(0.903) 		0.00471
(0.0372) 		9e-05
(0.00368) 		0.135
(0.26) 		0.115
(0.236) 		0.304
(0.435) 		0.0466
(0.137) 		0.185
(0.315)
SNAPC2 9 (2%) 384 0.0921
(0.206) 		0.0194
(0.0823) 		0.0188
(0.0809) 		0.0001
(0.00389) 		0.0381
(0.123) 		0.106
(0.225) 		0.162
(0.29) 		0.0969
(0.212) 		0.347
(0.473) 		0.522
(0.627)
CUBN 58 (15%) 335 0.00561
(0.0412) 		0.00918
(0.0544) 		0.338
(0.467) 		0.0706
(0.176) 		0.0914
(0.205) 		0.22
(0.351) 		0.0177
(0.0782) 		0.6
(0.692) 		0.704
(0.777) 		0.0322
(0.111)
POP1 19 (5%) 374 0.103
(0.221) 		0.47
(0.583) 		0.199
(0.33) 		0.0497
(0.143) 		0.00182
(0.0219) 		0.00359
(0.0325) 		0.183
(0.313) 		0.0342
(0.115) 		0.254
(0.384) 		0.0785
(0.188)
ZCRB1 6 (2%) 387 0.00999
(0.0566) 		0.0198
(0.0834) 		0.609
(0.699) 		0.0119
(0.0626) 		0.174
(0.302) 		0.00292
(0.029) 		0.231
(0.362) 		0.545
(0.646) 		1
(1.00) 		0.17
(0.299)
SLC9A11 24 (6%) 369 0.0727
(0.179) 		0.16
(0.288) 		0.369
(0.494) 		0.115
(0.235) 		0.0561
(0.154) 		0.155
(0.282) 		0.00867
(0.0524) 		0.0155
(0.0727) 		0.0429
(0.131) 		0.00502
(0.0387)
JHDM1D 10 (3%) 383 0.0245
(0.0952) 		0.00939
(0.0551) 		0.167
(0.297) 		0.0077
(0.0489) 		0.0827
(0.193) 		0.108
(0.227) 		0.0339
(0.114) 		0.281
(0.412) 		0.0771
(0.185) 		0.052
(0.147)
GLT8D1 7 (2%) 386 0.00398
(0.0339) 		0.0831
(0.194) 		0.148
(0.275) 		0.0169
(0.076) 		0.0431
(0.131) 		0.134
(0.26) 		0.0349
(0.116) 		0.0745
(0.182) 		0.0867
(0.199) 		0.112
(0.232)
FBXO34 9 (2%) 384 0.0114
(0.0607) 		0.126
(0.25) 		0.94
(0.97) 		0.142
(0.268) 		0.00043
(0.00957) 		0.0572
(0.156) 		0.0601
(0.16) 		0.0978
(0.213) 		0.00061
(0.0119) 		0.00143
(0.0192)
KIAA1632 27 (7%) 366 0.00132
(0.0183) 		0.00373
(0.0332) 		0.243
(0.374) 		0.00385
(0.0335) 		0.304
(0.435) 		0.0526
(0.148) 		0.103
(0.221) 		0.399
(0.518) 		0.0763
(0.185) 		0.0188
(0.0808)
ZNF776 8 (2%) 385 0.002
(0.0231) 		0.235
(0.366) 		0.946
(0.975) 		0.0244
(0.095) 		0.057
(0.155) 		0.71
(0.782) 		0.616
(0.706) 		0.0422
(0.13) 		0.0224
(0.09) 		0.631
(0.716)
MAN1C1 10 (3%) 383 0.0311
(0.108) 		0.00735
(0.0477) 		0.697
(0.772) 		0.0519
(0.147) 		0.333
(0.462) 		0.0411
(0.127) 		0.13
(0.255) 		0.0767
(0.185) 		0.156
(0.283) 		0.0275
(0.102)
MAP7D3 18 (5%) 375 0.00086
(0.0143) 		0.584
(0.68) 		0.0346
(0.115) 		0.00074
(0.0131) 		0.214
(0.346) 		0.00384
(0.0335) 		0.322
(0.451) 		0.192
(0.323) 		0.522
(0.627) 		0.621
(0.71)
ZFC3H1 16 (4%) 377 0.249
(0.381) 		0.0276
(0.102) 		0.327
(0.457) 		0.00393
(0.0336) 		0.053
(0.149) 		0.0427
(0.131) 		0.283
(0.414) 		0.136
(0.262) 		0.65
(0.731) 		0.0139
(0.0678)
USP13 12 (3%) 381 0.0452
(0.135) 		0.4
(0.518) 		0.113
(0.234) 		0.0763
(0.185) 		0.0457
(0.136) 		0.0397
(0.125) 		0.0667
(0.171) 		0.0378
(0.122) 		0.473
(0.585) 		0.286
(0.417)
FAM113B 15 (4%) 378 0.0104
(0.058) 		0.597
(0.689) 		0.534
(0.637) 		0.0294
(0.106) 		0.00089
(0.0145) 		0.0119
(0.0625) 		0.14
(0.267) 		0.162
(0.29) 		0.221
(0.352) 		0.105
(0.222)
KIAA0649 18 (5%) 375 0.00215
(0.0241) 		0.00715
(0.0468) 		0.972
(0.999) 		0.148
(0.275) 		0.0129
(0.0654) 		0.0466
(0.137) 		0.193
(0.324) 		0.0892
(0.202) 		0.128
(0.253) 		0.206
(0.338)
C1ORF177 12 (3%) 381 0.00466
(0.0369) 		0.0323
(0.111) 		0.718
(0.788) 		0.0929
(0.207) 		0.162
(0.29) 		0.0118
(0.0623) 		0.236
(0.367) 		0.0667
(0.171) 		0.0335
(0.114) 		0.0876
(0.2)
KLHL14 19 (5%) 374 0.00275
(0.0279) 		0.0431
(0.131) 		0.0138
(0.0676) 		0.07
(0.175) 		0.0446
(0.134) 		0.104
(0.222) 		0.121
(0.244) 		0.364
(0.489) 		0.274
(0.405) 		0.7
(0.774)
USP1 5 (1%) 388 0.0293
(0.106) 		0.0938
(0.208) 		0.701
(0.775) 		0.0467
(0.138) 		0.0161
(0.0739) 		0.00377
(0.0333) 		0.0915
(0.205) 		0.49
(0.599) 		0.735
(0.803) 		0.249
(0.38)
EFHA2 14 (4%) 379 0.00737
(0.0477) 		0.0316
(0.11) 		0.534
(0.637) 		0.452
(0.567) 		0.00593
(0.0425) 		0.005
(0.0386) 		0.491
(0.599) 		0.319
(0.448) 		0.336
(0.465) 		0.0509
(0.145)
TAF7L 9 (2%) 384 0.0114
(0.0609) 		0.0888
(0.202) 		0.305
(0.436) 		0.171
(0.299) 		0.00126
(0.018) 		0.752
(0.818) 		0.008
(0.0497) 		0.0981
(0.214) 		0.00063
(0.0121) 		0.322
(0.452)
KCNN3 10 (3%) 383 0.0053
(0.0399) 		0.00975
(0.0559) 		0.569
(0.667) 		0.00171
(0.0212) 		0.073
(0.18) 		0.00402
(0.034) 		0.142
(0.268) 		1
(1.00) 		0.85
(0.895) 		0.25
(0.381)
FAM133A 9 (2%) 384 0.0493
(0.142) 		0.0116
(0.0618) 		0.83
(0.881) 		0.142
(0.268) 		0.00672
(0.0453) 		0.0212
(0.087) 		0.0785
(0.188) 		0.169
(0.299) 		0.212
(0.344) 		0.309
(0.439)
EFHD1 6 (2%) 387 0.205
(0.337) 		0.0744
(0.182) 		0.252
(0.383) 		0.0168
(0.0756) 		0.00573
(0.0416) 		0.0651
(0.168) 		0.045
(0.134) 		0.142
(0.268) 		0.225
(0.356) 		0.0224
(0.09)
BAHCC1 12 (3%) 381 0.0424
(0.13) 		0.0785
(0.188) 		0.115
(0.235) 		0.465
(0.577) 		0.503
(0.61) 		0.00762
(0.0487) 		0.144
(0.271) 		0.0382
(0.123) 		0.173
(0.301) 		0.0226
(0.0904)
USP21 13 (3%) 380 0.137
(0.263) 		0.14
(0.266) 		0.226
(0.357) 		0.13
(0.255) 		0.033
(0.112) 		0.0716
(0.177) 		0.00915
(0.0542) 		0.399
(0.518) 		0.0332
(0.113) 		0.00148
(0.0195)
RUSC2 20 (5%) 373 0.00056
(0.0113) 		0.013
(0.0655) 		0.28
(0.411) 		0.00528
(0.0398) 		0.485
(0.595) 		0.172
(0.3) 		0.122
(0.245) 		0.282
(0.413) 		0.0182
(0.0794) 		0.228
(0.359)
FBXO43 10 (3%) 383 0.0136
(0.067) 		0.113
(0.234) 		0.257
(0.388) 		0.0211
(0.0867) 		0.13
(0.255) 		0.0608
(0.162) 		0.0275
(0.102) 		0.0881
(0.201) 		0.487
(0.597) 		0.0111
(0.06)
AGAP6 10 (3%) 383 0.00481
(0.0377) 		0.0457
(0.136) 		0.351
(0.477) 		0.141
(0.267) 		0.206
(0.338) 		0.062
(0.163) 		0.0471
(0.138) 		0.0888
(0.202) 		0.033
(0.112) 		0.088
(0.201)
AGAP5 8 (2%) 385 0.195
(0.326) 		0.0919
(0.206) 		0.958
(0.986) 		0.476
(0.588) 		0.00401
(0.034) 		0.0471
(0.138) 		0.0931
(0.207) 		0.171
(0.3) 		0.0323
(0.111) 		0.0486
(0.141)
CDKL3 7 (2%) 386 0.0127
(0.0648) 		0.433
(0.55) 		0.676
(0.753) 		0.0518
(0.147) 		0.00608
(0.0429) 		0.451
(0.566) 		0.0421
(0.13) 		0.295
(0.425) 		0.018
(0.079) 		0.0528
(0.148)
ZNF207 8 (2%) 385 0.0238
(0.0935) 		0.181
(0.31) 		0.151
(0.278) 		0.0001
(0.00389) 		0.00191
(0.0224) 		0.00262
(0.027) 		0.24
(0.372) 		0.489
(0.598) 		0.578
(0.675) 		0.697
(0.772)
PHACTR1 10 (3%) 383 0.0134
(0.0667) 		0.0841
(0.196) 		0.805
(0.86) 		0.00385
(0.0335) 		0.0185
(0.08) 		0.00599
(0.0427) 		0.0501
(0.143) 		0.62
(0.709) 		0.879
(0.919) 		0.27
(0.401)
RNF111 11 (3%) 382 0.00688
(0.0459) 		0.19
(0.321) 		0.152
(0.279) 		0.00171
(0.0212) 		0.118
(0.24) 		0.032
(0.11) 		0.00316
(0.0301) 		0.316
(0.446) 		0.16
(0.288) 		0.257
(0.387)
CLCA4 17 (4%) 376 0.0134
(0.0666) 		0.156
(0.283) 		0.0931
(0.207) 		0.00022
(0.0065) 		0.00027
(0.00734) 		0.0581
(0.157) 		0.0662
(0.17) 		0.256
(0.386) 		0.0369
(0.121) 		0.0763
(0.185)
SCN10A 39 (10%) 354 0.0192
(0.0817) 		0.009
(0.0536) 		0.256
(0.386) 		0.0312
(0.109) 		0.332
(0.462) 		0.734
(0.802) 		0.164
(0.293) 		0.195
(0.326) 		0.0254
(0.0975) 		0.233
(0.364)
ACTR8 11 (3%) 382 0.0131
(0.0659) 		0.45
(0.566) 		0.366
(0.491) 		7e-05
(0.00325) 		0.203
(0.335) 		0.00602
(0.0428) 		0.0459
(0.136) 		0.598
(0.69) 		1
(1.00) 		0.827
(0.879)
TLE1 12 (3%) 381 0.00091
(0.0147) 		0.0227
(0.0905) 		0.9
(0.938) 		0.00062
(0.012) 		0.0297
(0.106) 		0.106
(0.224) 		0.301
(0.431) 		0.208
(0.341) 		0.088
(0.201) 		0.279
(0.411)
GTF3C4 13 (3%) 380 0.00021
(0.00623) 		0.0313
(0.109) 		0.192
(0.323) 		0.052
(0.147) 		0.0859
(0.198) 		0.0222
(0.0895) 		0.155
(0.282) 		0.0578
(0.157) 		0.0675
(0.172) 		0.0345
(0.115)
KIFAP3 14 (4%) 379 0.015
(0.0711) 		0.0107
(0.0589) 		0.853
(0.898) 		0.0385
(0.123) 		0.45
(0.566) 		0.873
(0.915) 		0.738
(0.804) 		0.873
(0.915) 		0.851
(0.896) 		0.0178
(0.0785)
CEP290 14 (4%) 379 0.314
(0.444) 		0.00923
(0.0545) 		0.277
(0.408) 		0.00674
(0.0453) 		0.155
(0.282) 		0.217
(0.349) 		0.0317
(0.11) 		0.16
(0.288) 		0.256
(0.386) 		0.0184
(0.0797)
KIAA1543 17 (4%) 376 0.0114
(0.0609) 		0.0138
(0.0677) 		0.289
(0.42) 		0.223
(0.355) 		0.0416
(0.128) 		0.0771
(0.185) 		0.0048
(0.0376) 		0.0608
(0.161) 		0.389
(0.511) 		0.0564
(0.155)
AXIN1 14 (4%) 379 0.197
(0.327) 		0.0277
(0.103) 		0.252
(0.383) 		0.00101
(0.0158) 		0.318
(0.447) 		0.0043
(0.0352) 		0.289
(0.419) 		0.188
(0.318) 		0.605
(0.696) 		0.00037
(0.00872)
KIAA1797 19 (5%) 374 0.00683
(0.0457) 		0.376
(0.5) 		0.175
(0.302) 		0.0162
(0.0742) 		0.00628
(0.0436) 		0.289
(0.419) 		0.013
(0.0656) 		0.254
(0.384) 		0.24
(0.372) 		0.425
(0.542)
SERPINB10 8 (2%) 385 0.00516
(0.0393) 		0.19
(0.321) 		0.163
(0.29) 		0.718
(0.788) 		0.031
(0.108) 		0.0905
(0.204) 		0.0396
(0.125) 		0.033
(0.112) 		0.347
(0.474) 		0.156
(0.283)
THEMIS 11 (3%) 382 8e-05
(0.00338) 		0.326
(0.455) 		0.769
(0.832) 		0.00053
(0.0109) 		0.0416
(0.128) 		0.3
(0.431) 		0.0289
(0.105) 		0.445
(0.561) 		0.596
(0.689) 		0.268
(0.399)
R3HDM2 9 (2%) 384 0.00181
(0.0219) 		0.535
(0.638) 		0.71
(0.782) 		0.00326
(0.0307) 		0.445
(0.561) 		0.11
(0.23) 		0.00671
(0.0453) 		0.0287
(0.105) 		0.0864
(0.199) 		0.11
(0.229)
PLEKHO1 7 (2%) 386 0.00374
(0.0333) 		0.535
(0.638) 		0.366
(0.491) 		0.00728
(0.0474) 		0.137
(0.263) 		0.712
(0.784) 		0.00109
(0.0165) 		0.215
(0.347) 		0.0191
(0.0815) 		0.294
(0.423)
GPR124 17 (4%) 376 0.00155
(0.02) 		0.0368
(0.12) 		0.717
(0.788) 		0.0283
(0.104) 		0.0757
(0.184) 		0.26
(0.39) 		0.115
(0.236) 		0.555
(0.655) 		0.0417
(0.129) 		0.083
(0.194)
GIPC3 7 (2%) 386 0.00954
(0.0554) 		0.0124
(0.0638) 		0.0161
(0.0738) 		0.244
(0.375) 		0.125
(0.249) 		0.00247
(0.026) 		0.577
(0.675) 		1
(1.00) 		0.14
(0.266) 		0.401
(0.52)
PYGO2 8 (2%) 385 0.0706
(0.176) 		0.0185
(0.08) 		0.957
(0.986) 		0.67
(0.748) 		0.142
(0.268) 		0.0186
(0.0802) 		0.0186
(0.0802) 		0.171
(0.299) 		0.0782
(0.187) 		0.0303
(0.107)
MRPS5 7 (2%) 386 0.0263
(0.0998) 		0.091
(0.205) 		0.889
(0.927) 		0.0307
(0.108) 		0.00157
(0.0201) 		0.56
(0.66) 		0.168
(0.297) 		0.291
(0.421) 		0.00743
(0.0479) 		0.2
(0.331)
RINT1 7 (2%) 386 0.37
(0.495) 		0.285
(0.416) 		0.046
(0.136) 		0.0803
(0.19) 		0.225
(0.356) 		0.0202
(0.0846) 		0.0234
(0.0924) 		0.0742
(0.181) 		0.0236
(0.0927) 		0.195
(0.326)
ESRP1 9 (2%) 384 0.166
(0.295) 		0.774
(0.836) 		0.262
(0.391) 		0.0438
(0.132) 		0.0219
(0.0888) 		0.35
(0.477) 		0.00976
(0.056) 		0.0284
(0.104) 		0.252
(0.383) 		0.404
(0.522)
HOOK1 7 (2%) 386 0.00376
(0.0333) 		0.234
(0.365) 		0.824
(0.876) 		0.00704
(0.0465) 		0.126
(0.25) 		0.0202
(0.0847) 		0.209
(0.342) 		0.0746
(0.182) 		0.214
(0.346) 		0.00783
(0.0493)
TBL1XR1 8 (2%) 385 0.00389
(0.0336) 		0.139
(0.265) 		0.37
(0.495) 		0.0491
(0.142) 		0.171
(0.299) 		0.0133
(0.0666) 		0.0175
(0.0777) 		0.17
(0.299) 		0.144
(0.27) 		0.309
(0.439)
INO80D 16 (4%) 377 0.00223
(0.0245) 		0.365
(0.49) 		0.00318
(0.0303) 		0.00266
(0.0273) 		0.0739
(0.181) 		0.167
(0.296) 		0.00016
(0.00522) 		0.281
(0.412) 		0.238
(0.37) 		0.241
(0.372)
PTX4 12 (3%) 381 0.00096
(0.0152) 		0.00308
(0.0297) 		0.17
(0.299) 		0.128
(0.253) 		0.00468
(0.037) 		0.00294
(0.029) 		0.576
(0.674) 		0.522
(0.627) 		1
(1.00) 		0.0592
(0.159)
DHRS9 9 (2%) 384 0.735
(0.803) 		0.44
(0.556) 		0.811
(0.865) 		0.0436
(0.132) 		0.042
(0.129) 		0.303
(0.434) 		0.0111
(0.06) 		0.0286
(0.104) 		0.556
(0.657) 		0.153
(0.28)
CD58 7 (2%) 386 0.0124
(0.0638) 		0.209
(0.341) 		0.0293
(0.106) 		0.307
(0.437) 		0.151
(0.278) 		0.957
(0.986) 		0.0338
(0.114) 		0.0753
(0.183) 		0.0227
(0.0907) 		0.196
(0.327)
KIAA1539 10 (3%) 383 0.0184
(0.0798) 		0.0798
(0.19) 		0.616
(0.707) 		0.0155
(0.0727) 		0.0135
(0.0667) 		0.115
(0.235) 		0.628
(0.714) 		0.0765
(0.185) 		0.636
(0.72) 		0.0141
(0.0687)
CTNNA1 15 (4%) 378 0.00341
(0.0315) 		0.0156
(0.0729) 		0.592
(0.684) 		0.0642
(0.167) 		0.00778
(0.0492) 		0.0314
(0.109) 		0.109
(0.229) 		0.456
(0.57) 		0.254
(0.384) 		0.0624
(0.164)
EFNA4 5 (1%) 388 0.0289
(0.105) 		0.02
(0.0842) 		0.131
(0.256) 		0.00053
(0.0109) 		0.289
(0.419) 		0.0476
(0.139) 		0.196
(0.326) 		0.83
(0.881) 		0.847
(0.894) 		0.0675
(0.172)
SIX3 10 (3%) 383 0.0137
(0.0673) 		0.0299
(0.107) 		0.88
(0.92) 		0.0517
(0.147) 		0.701
(0.775) 		0.0146
(0.0701) 		0.0522
(0.147) 		0.753
(0.818) 		0.494
(0.601) 		0.0304
(0.107)
CCT6A 8 (2%) 385 0.0052
(0.0395) 		0.0119
(0.0625) 		0.94
(0.97) 		0.00692
(0.046) 		0.0165
(0.075) 		0.0941
(0.208) 		0.855
(0.899) 		0.148
(0.275) 		0.125
(0.249) 		0.679
(0.756)
OTX2 9 (2%) 384 0.00318
(0.0303) 		0.0717
(0.177) 		0.647
(0.729) 		0.00178
(0.0217) 		0.277
(0.409) 		0.298
(0.428) 		0.00347
(0.0319) 		0.098
(0.214) 		0.118
(0.239) 		0.00134
(0.0185)
MYO9B 20 (5%) 373 0.016
(0.0736) 		0.0738
(0.181) 		0.0295
(0.106) 		0.236
(0.367) 		0.149
(0.276) 		0.103
(0.221) 		0.00282
(0.0283) 		0.00299
(0.0291) 		0.218
(0.349) 		0.0976
(0.213)
TBC1D22B 7 (2%) 386 0.0559
(0.154) 		0.00613
(0.0431) 		0.036
(0.118) 		0.00082
(0.0138) 		0.224
(0.356) 		0.0107
(0.0589) 		0.0672
(0.171) 		0.217
(0.348) 		0.299
(0.43) 		0.113
(0.233)
PPP1R12C 9 (2%) 384 0.00069
(0.0127) 		0.0187
(0.0805) 		0.643
(0.726) 		0.0523
(0.147) 		0.367
(0.492) 		0.00599
(0.0427) 		0.0593
(0.159) 		0.0977
(0.213) 		0.136
(0.262) 		0.0162
(0.074)
ABCA7 20 (5%) 373 0.00146
(0.0194) 		0.0145
(0.0698) 		0.0617
(0.163) 		0.00595
(0.0426) 		0.065
(0.168) 		0.0571
(0.156) 		0.096
(0.211) 		0.472
(0.584) 		0.153
(0.28) 		0.0424
(0.13)
HTRA2 7 (2%) 386 0.0579
(0.157) 		0.0142
(0.0688) 		0.386
(0.509) 		0.011
(0.0596) 		0.0112
(0.0601) 		0.201
(0.332) 		0.0546
(0.152) 		0.388
(0.51) 		0.214
(0.346) 		0.00852
(0.0516)
CLSTN1 10 (3%) 383 0.0482
(0.14) 		0.0403
(0.127) 		0.393
(0.514) 		0.136
(0.261) 		0.708
(0.78) 		0.397
(0.517) 		0.0451
(0.134) 		0.0902
(0.203) 		0.0326
(0.112) 		0.0868
(0.199)
HNF1B 5 (1%) 388 0.0481
(0.14) 		0.107
(0.226) 		0.225
(0.356) 		0.00165
(0.0207) 		0.0228
(0.0908) 		0.154
(0.281) 		0.228
(0.359) 		0.248
(0.38) 		0.0602
(0.161) 		0.0221
(0.0894)
SALL2 14 (4%) 379 0.319
(0.448) 		0.00963
(0.0556) 		0.0163
(0.0743) 		0.0145
(0.0696) 		0.728
(0.796) 		0.0591
(0.159) 		0.116
(0.237) 		0.578
(0.675) 		0.028
(0.103) 		0.492
(0.6)
ELMO1 23 (6%) 370 0.00309
(0.0297) 		0.209
(0.341) 		0.0682
(0.173) 		0.0175
(0.0777) 		0.0119
(0.0626) 		0.204
(0.336) 		0.0569
(0.155) 		0.0316
(0.109) 		0.803
(0.859) 		0.448
(0.564)
DHX36 20 (5%) 373 0.00264
(0.0272) 		0.0284
(0.104) 		0.627
(0.714) 		0.0286
(0.104) 		0.0582
(0.157) 		0.00255
(0.0265) 		0.15
(0.277) 		0.0644
(0.167) 		0.75
(0.817) 		0.566
(0.666)
PADI3 13 (3%) 380 0.0792
(0.188) 		0.00143
(0.0192) 		0.258
(0.388) 		0.00605
(0.0429) 		0.042
(0.129) 		0.152
(0.279) 		0.0264
(0.1) 		0.292
(0.422) 		0.0564
(0.155) 		0.25
(0.382)
RGS22 21 (5%) 372 0.018
(0.0791) 		0.00987
(0.0563) 		0.146
(0.272) 		5e-05
(0.00258) 		0.0726
(0.179) 		0.0566
(0.155) 		0.0302
(0.107) 		0.345
(0.473) 		0.0686
(0.173) 		0.104
(0.221)
RAB40B 8 (2%) 385 0.0216
(0.0881) 		0.44
(0.556) 		0.205
(0.337) 		0.00069
(0.0127) 		0.193
(0.323) 		0.0048
(0.0376) 		0.0028
(0.0282) 		0.259
(0.389) 		0.229
(0.36) 		0.303
(0.433)
BMPR1B 9 (2%) 384 0.00401
(0.034) 		0.0209
(0.0862) 		0.48
(0.591) 		0.673
(0.75) 		0.407
(0.525) 		0.106
(0.225) 		0.0267
(0.101) 		0.0274
(0.102) 		0.289
(0.419) 		0.22
(0.351)
INSM2 12 (3%) 381 0.00088
(0.0145) 		0.0799
(0.19) 		0.134
(0.26) 		0.0717
(0.177) 		0.0092
(0.0544) 		0.0265
(0.1) 		0.00419
(0.0348) 		0.614
(0.704) 		0.509
(0.615) 		0.645
(0.727)
CHST4 7 (2%) 386 0.15
(0.277) 		0.00225
(0.0246) 		0.416
(0.533) 		0.00233
(0.025) 		0.441
(0.557) 		0.103
(0.221) 		0.0262
(0.0996) 		0.215
(0.347) 		0.659
(0.739) 		0.00052
(0.0109)
ZBTB40 11 (3%) 382 0.205
(0.337) 		0.0345
(0.115) 		0.419
(0.536) 		0.177
(0.305) 		0.0355
(0.117) 		0.966
(0.993) 		0.0227
(0.0906) 		0.0337
(0.114) 		0.634
(0.719) 		0.104
(0.221)
NAA16 9 (2%) 384 0.0935
(0.208) 		0.416
(0.533) 		0.228
(0.359) 		0.0186
(0.0803) 		0.00201
(0.0231) 		0.702
(0.776) 		0.00255
(0.0265) 		0.904
(0.94) 		0.0471
(0.138) 		0.106
(0.224)
IGSF9B 20 (5%) 373 0.00146
(0.0194) 		0.0514
(0.146) 		0.307
(0.438) 		0.00273
(0.0278) 		0.0778
(0.186) 		0.0294
(0.106) 		0.222
(0.353) 		0.15
(0.277) 		0.137
(0.262) 		0.0033
(0.0308)
ABCC2 16 (4%) 377 0.433
(0.55) 		0.0427
(0.13) 		0.531
(0.634) 		0.0822
(0.193) 		0.0329
(0.112) 		0.587
(0.681) 		0.00068
(0.0126) 		0.038
(0.122) 		0.0764
(0.185) 		0.284
(0.415)
FAM178A 11 (3%) 382 0.0171
(0.0766) 		0.0838
(0.195) 		0.0459
(0.136) 		0.0215
(0.0878) 		0.0391
(0.124) 		0.307
(0.437) 		0.238
(0.369) 		0.313
(0.443) 		0.128
(0.253) 		0.647
(0.728)
ZC3H3 19 (5%) 374 0.0581
(0.157) 		0.00031
(0.00787) 		0.363
(0.488) 		0.0176
(0.0779) 		0.0613
(0.162) 		0.142
(0.268) 		0.00728
(0.0474) 		0.116
(0.236) 		0.13
(0.255) 		0.0446
(0.134)
GPC4 8 (2%) 385 0.15
(0.277) 		0.162
(0.29) 		0.564
(0.664) 		0.343
(0.47) 		0.00088
(0.0145) 		0.00452
(0.0362) 		0.0334
(0.113) 		0.0313
(0.109) 		0.0881
(0.201) 		0.198
(0.328)
ACAA2 8 (2%) 385 0.0445
(0.134) 		0.103
(0.221) 		0.156
(0.283) 		0.00372
(0.0332) 		0.0865
(0.199) 		0.00567
(0.0415) 		0.12
(0.242) 		0.0335
(0.113) 		0.0881
(0.201) 		0.114
(0.235)
HSF4 8 (2%) 385 0.00256
(0.0266) 		0.00779
(0.0492) 		0.121
(0.244) 		0.00593
(0.0425) 		0.126
(0.25) 		0.0333
(0.113) 		0.0861
(0.198) 		0.17
(0.299) 		0.6
(0.692) 		0.525
(0.628)
SP140 16 (4%) 377 0.747
(0.814) 		0.23
(0.361) 		0.122
(0.245) 		0.171
(0.299) 		0.687
(0.763) 		0.0437
(0.132) 		0.00783
(0.0493) 		0.0793
(0.189) 		0.00348
(0.032) 		0.00355
(0.0323)
CNGA1 10 (3%) 383 0.0136
(0.067) 		0.0462
(0.137) 		0.789
(0.848) 		0.0017
(0.0211) 		0.0263
(0.0998) 		0.113
(0.234) 		0.454
(0.568) 		0.0895
(0.202) 		0.0558
(0.154) 		0.0505
(0.144)
WDR53 6 (2%) 387 0.0226
(0.0905) 		0.0409
(0.127) 		0.188
(0.319) 		0.347
(0.473) 		0.00081
(0.0137) 		0.00373
(0.0332) 		0.332
(0.461) 		0.141
(0.267) 		0.85
(0.895) 		0.407
(0.525)
FBXO32 7 (2%) 386 0.0566
(0.155) 		0.0925
(0.207) 		0.499
(0.606) 		0.00039
(0.00902) 		0.0304
(0.107) 		5e-05
(0.00258) 		0.00038
(0.00887) 		0.075
(0.183) 		0.144
(0.27) 		0.0674
(0.172)
WFIKKN2 16 (4%) 377 0.00221
(0.0243) 		0.0166
(0.075) 		0.548
(0.649) 		0.346
(0.473) 		0.157
(0.284) 		0.323
(0.452) 		0.108
(0.228) 		0.346
(0.473) 		0.0366
(0.12) 		0.00068
(0.0126)
OR1L3 7 (2%) 386 0.569
(0.667) 		0.0109
(0.0594) 		0.877
(0.918) 		0.48
(0.591) 		0.0817
(0.192) 		0.0166
(0.0752) 		0.00357
(0.0324) 		0.0738
(0.181) 		0.0281
(0.104) 		0.169
(0.299)
KIF20B 13 (3%) 380 0.0224
(0.0902) 		0.0962
(0.211) 		0.0641
(0.167) 		0.00016
(0.00522) 		0.0288
(0.105) 		0.252
(0.383) 		0.182
(0.312) 		0.131
(0.256) 		0.0381
(0.123) 		0.392
(0.513)
LRP1B 104 (26%) 289 0.211
(0.343) 		1e-05
(0.000978) 		0.216
(0.347) 		0.0017
(0.0211) 		0.00148
(0.0195) 		0.00029
(0.0076) 		0.16
(0.288) 		0.134
(0.26) 		0.752
(0.818) 		0.0628
(0.165)
MYCL1 8 (2%) 385 0.768
(0.831) 		0.0116
(0.0618) 		0.229
(0.36) 		0.0159
(0.0734) 		0.333
(0.462) 		0.0949
(0.209) 		0.0228
(0.0907) 		0.0328
(0.112) 		0.214
(0.346) 		0.112
(0.232)
TBC1D5 9 (2%) 384 0.00301
(0.0293) 		0.321
(0.45) 		0.344
(0.471) 		0.0574
(0.156) 		0.0107
(0.0589) 		0.493
(0.601) 		0.00733
(0.0476) 		0.132
(0.256) 		0.0153
(0.0722) 		0.115
(0.235)
EPHA3 28 (7%) 365 0.271
(0.402) 		0.0696
(0.175) 		0.00349
(0.032) 		0.00852
(0.0516) 		0.0147
(0.0702) 		0.0758
(0.184) 		0.379
(0.503) 		0.481
(0.592) 		0.00639
(0.044) 		0.0951
(0.209)
GABRG3 9 (2%) 384 0.00453
(0.0362) 		0.0218
(0.0888) 		0.592
(0.684) 		0.00105
(0.0162) 		0.00846
(0.0515) 		0.751
(0.817) 		0.472
(0.584) 		1
(1.00) 		0.534
(0.637) 		0.36
(0.486)
EPHA10 17 (4%) 376 0.0008
(0.0136) 		0.0694
(0.174) 		0.0536
(0.15) 		0.0338
(0.114) 		0.129
(0.254) 		0.0525
(0.148) 		0.00088
(0.0145) 		0.00353
(0.0323) 		0.221
(0.353) 		0.0511
(0.146)
XRCC2 6 (2%) 387 0.00921
(0.0544) 		0.182
(0.312) 		0.276
(0.407) 		0.00368
(0.033) 		0.624
(0.712) 		0.0174
(0.0773) 		0.204
(0.335) 		0.542
(0.645) 		0.252
(0.383) 		0.0438
(0.132)
MED23 18 (5%) 375 0.0147
(0.0703) 		0.319
(0.448) 		0.405
(0.523) 		0.29
(0.42) 		0.0666
(0.17) 		0.326
(0.455) 		0.0071
(0.0466) 		0.192
(0.323) 		0.0439
(0.133) 		0.0124
(0.0638)
SYBU 15 (4%) 378 0.00792
(0.0495) 		0.127
(0.251) 		0.366
(0.491) 		0.00045
(0.00985) 		0.00028
(0.00747) 		0.179
(0.307) 		0.0579
(0.157) 		0.46
(0.572) 		0.188
(0.319) 		0.023
(0.0912)
CPT2 6 (2%) 387 0.00985
(0.0562) 		0.443
(0.558) 		0.00817
(0.0502) 		0.192
(0.323) 		0.166
(0.295) 		0.325
(0.454) 		0.372
(0.496) 		0.637
(0.721) 		0.0136
(0.067) 		0.0331
(0.112)
LRRC43 12 (3%) 381 0.0168
(0.0756) 		0.0938
(0.208) 		0.756
(0.82) 		0.0276
(0.103) 		0.0184
(0.0798) 		0.154
(0.281) 		0.0245
(0.0952) 		0.117
(0.238) 		0.601
(0.692) 		0.117
(0.238)
TRIP6 8 (2%) 385 0.0229
(0.091) 		0.721
(0.791) 		0.611
(0.702) 		0.0303
(0.107) 		0.0149
(0.0709) 		0.622
(0.71) 		0.117
(0.239) 		0.625
(0.713) 		0.66
(0.74) 		0.0219
(0.089)
MUC6 46 (12%) 347 0.133
(0.258) 		0.841
(0.888) 		0.106
(0.224) 		0.00154
(0.02) 		0.0306
(0.108) 		0.0374
(0.122) 		0.325
(0.454) 		0.1
(0.216) 		0.512
(0.618) 		0.517
(0.623)
KLF3 19 (5%) 374 0.00608
(0.0429) 		0.0178
(0.0785) 		0.106
(0.225) 		0.0853
(0.197) 		0.209
(0.341) 		0.00339
(0.0314) 		0.314
(0.444) 		0.697
(0.772) 		0.906
(0.942) 		0.403
(0.522)
KIAA0406 23 (6%) 370 0.00085
(0.0142) 		0.00269
(0.0275) 		0.542
(0.644) 		0.0326
(0.112) 		0.172
(0.3) 		0.391
(0.512) 		0.514
(0.62) 		0.332
(0.462) 		0.0563
(0.155) 		0.496
(0.603)
CEP57 13 (3%) 380 0.00386
(0.0335) 		0.0386
(0.123) 		0.179
(0.308) 		0.2
(0.33) 		0.262
(0.391) 		0.0182
(0.0794) 		0.109
(0.228) 		0.398
(0.518) 		0.435
(0.551) 		0.196
(0.327)
ZNF48 13 (3%) 380 0.00042
(0.0094) 		0.00363
(0.0326) 		0.0953
(0.21) 		0.00576
(0.0417) 		0.396
(0.516) 		0.0774
(0.186) 		0.159
(0.287) 		0.292
(0.422) 		0.632
(0.717) 		0.112
(0.232)
FZD3 11 (3%) 382 0.00708
(0.0466) 		0.0161
(0.0739) 		0.708
(0.78) 		0.137
(0.262) 		0.0807
(0.191) 		0.148
(0.275) 		0.165
(0.294) 		0.487
(0.597) 		0.206
(0.337) 		0.0383
(0.123)
DDC 10 (3%) 383 0.00033
(0.00805) 		0.264
(0.394) 		0.256
(0.386) 		0.544
(0.646) 		0.325
(0.455) 		0.862
(0.906) 		0.00185
(0.0221) 		0.0122
(0.0636) 		0.0763
(0.185) 		0.175
(0.302)
FAM116A 9 (2%) 384 0.0492
(0.142) 		0.0678
(0.172) 		0.214
(0.346) 		0.019
(0.0813) 		0.184
(0.314) 		0.066
(0.17) 		0.0415
(0.128) 		0.589
(0.682) 		0.298
(0.429) 		0.523
(0.627)
ZFP36L2 14 (4%) 379 0.157
(0.284) 		0.0127
(0.0648) 		0.77
(0.833) 		0.0229
(0.0909) 		0.975
(1.00) 		0.552
(0.653) 		0.334
(0.463) 		0.434
(0.551) 		0.346
(0.473) 		0.0188
(0.081)
CTCF 16 (4%) 377 0.00011
(0.00414) 		0.0845
(0.196) 		0.561
(0.661) 		0.285
(0.416) 		0.00127
(0.018) 		0.00965
(0.0557) 		0.0817
(0.192) 		0.128
(0.253) 		0.935
(0.966) 		0.282
(0.414)
NT5M 6 (2%) 387 0.111
(0.231) 		0.172
(0.3) 		0.258
(0.388) 		0.0407
(0.127) 		0.409
(0.527) 		0.00777
(0.0491) 		0.00554
(0.0409) 		0.142
(0.268) 		0.0859
(0.198) 		0.224
(0.355)
C19ORF40 7 (2%) 386 0.368
(0.493) 		0.801
(0.857) 		0.0248
(0.0961) 		0.14
(0.266) 		0.359
(0.484) 		0.806
(0.861) 		0.0109
(0.0594) 		0.142
(0.268) 		0.462
(0.574) 		0.0428
(0.131)
ADAMDEC1 12 (3%) 381 8e-05
(0.00338) 		0.078
(0.187) 		0.089
(0.202) 		0.0324
(0.111) 		0.0938
(0.208) 		0.0497
(0.143) 		0.331
(0.461) 		0.315
(0.445) 		0.284
(0.415) 		0.172
(0.3)
POLM 13 (3%) 380 0.00036
(0.00857) 		0.0796
(0.189) 		0.0711
(0.177) 		0.0127
(0.0648) 		0.242
(0.373) 		0.218
(0.349) 		0.00819
(0.0503) 		0.13
(0.255) 		0.382
(0.505) 		0.0907
(0.204)
SERPINI1 9 (2%) 384 0.0116
(0.0615) 		0.04
(0.126) 		0.261
(0.391) 		0.00165
(0.0207) 		0.0937
(0.208) 		0.417
(0.534) 		0.175
(0.303) 		0.343
(0.47) 		0.0867
(0.199) 		0.0687
(0.174)
TTF1 16 (4%) 377 0.0125
(0.0642) 		0.037
(0.121) 		0.256
(0.387) 		0.027
(0.101) 		0.0956
(0.21) 		0.521
(0.626) 		0.0887
(0.201) 		0.283
(0.414) 		0.602
(0.694) 		0.368
(0.493)
FAM155B 13 (3%) 380 0.287
(0.418) 		0.00217
(0.0241) 		0.618
(0.708) 		0.139
(0.265) 		0.168
(0.298) 		0.0766
(0.185) 		0.237
(0.368) 		0.0907
(0.204) 		0.0199
(0.084) 		0.00363
(0.0326)
ZKSCAN5 11 (3%) 382 0.052
(0.147) 		0.113
(0.234) 		0.044
(0.133) 		0.0768
(0.185) 		0.0448
(0.134) 		0.117
(0.239) 		0.0156
(0.0729) 		0.0606
(0.161) 		0.386
(0.509) 		0.0555
(0.153)
CTSC 11 (3%) 382 0.00011
(0.00414) 		0.0124
(0.0638) 		0.581
(0.677) 		0.0522
(0.147) 		0.12
(0.242) 		0.00875
(0.0527) 		0.387
(0.509) 		0.49
(0.598) 		0.197
(0.327) 		0.313
(0.443)
ACVR1B 13 (3%) 380 0.0685
(0.173) 		0.26
(0.39) 		0.341
(0.468) 		0.0336
(0.114) 		0.00017
(0.00544) 		0.00354
(0.0323) 		0.0946
(0.209) 		0.13
(0.255) 		0.388
(0.51) 		0.146
(0.272)
PUS7L 9 (2%) 384 0.0936
(0.208) 		0.164
(0.293) 		0.109
(0.229) 		0.4
(0.518) 		0.303
(0.433) 		0.838
(0.886) 		0.00295
(0.029) 		0.17
(0.299) 		0.00067
(0.0125) 		0.00504
(0.0387)
MTIF2 18 (5%) 375 8e-05
(0.00338) 		0.00483
(0.0378) 		0.0659
(0.169) 		0.0869
(0.199) 		0.128
(0.253) 		0.475
(0.587) 		0.0618
(0.163) 		0.456
(0.57) 		0.0437
(0.132) 		0.554
(0.655)
NDST2 11 (3%) 382 0.0534
(0.149) 		0.111
(0.231) 		0.253
(0.384) 		0.0207
(0.0859) 		0.00053
(0.0109) 		0.389
(0.51) 		0.151
(0.278) 		0.0591
(0.159) 		0.0352
(0.117) 		0.218
(0.35)
OPTN 12 (3%) 381 0.0418
(0.129) 		0.461
(0.574) 		0.0711
(0.177) 		0.00971
(0.0559) 		0.122
(0.245) 		0.139
(0.265) 		0.0168
(0.0756) 		0.52
(0.626) 		0.281
(0.412) 		0.121
(0.244)
PKN2 16 (4%) 377 0.00137
(0.0187) 		0.445
(0.561) 		0.423
(0.54) 		0.0995
(0.216) 		0.0989
(0.215) 		0.0282
(0.104) 		0.0221
(0.0894) 		0.166
(0.295) 		0.0772
(0.186) 		0.0765
(0.185)
ZC3H18 20 (5%) 373 0.025
(0.0964) 		0.224
(0.355) 		0.00943
(0.0551) 		0.0696
(0.175) 		0.589
(0.682) 		0.101
(0.218) 		0.0138
(0.0677) 		0.147
(0.275) 		0.051
(0.145) 		0.0541
(0.151)
CDC25C 11 (3%) 382 0.0534
(0.149) 		0.0087
(0.0525) 		0.237
(0.368) 		0.0379
(0.122) 		0.354
(0.48) 		0.0301
(0.107) 		0.516
(0.622) 		0.486
(0.596) 		0.901
(0.938) 		0.907
(0.943)
HCFC1R1 6 (2%) 387 0.0102
(0.0572) 		0.0669
(0.171) 		0.0116
(0.0616) 		0.0337
(0.114) 		0.136
(0.261) 		0.543
(0.645) 		0.462
(0.574) 		0.169
(0.299)
PLOD3 16 (4%) 377 0.0188
(0.0809) 		0.0318
(0.11) 		0.0816
(0.192) 		0.257
(0.387) 		0.234
(0.365) 		0.0813
(0.191) 		0.615
(0.705) 		0.645
(0.728) 		0.339
(0.467) 		0.00701
(0.0464)
MFN1 9 (2%) 384 0.15
(0.276) 		0.571
(0.669) 		0.279
(0.411) 		0.189
(0.32) 		0.27
(0.4) 		0.0152
(0.0718) 		0.031
(0.108) 		0.17
(0.299) 		0.0461
(0.136) 		0.107
(0.226)
DLGAP3 20 (5%) 373 0.474
(0.586) 		0.0366
(0.12) 		0.791
(0.849) 		0.096
(0.211) 		0.0401
(0.126) 		0.0821
(0.192) 		0.0949
(0.209) 		0.0191
(0.0817) 		0.213
(0.345) 		0.237
(0.368)
RTN2 15 (4%) 378 0.00754
(0.0483) 		0.155
(0.282) 		0.356
(0.482) 		0.0544
(0.151) 		0.658
(0.738) 		0.215
(0.347) 		0.0541
(0.151) 		0.0761
(0.185) 		0.00156
(0.02) 		0.0172
(0.0768)
NBN 15 (4%) 378 0.0441
(0.133) 		0.0919
(0.206) 		0.391
(0.512) 		0.0463
(0.137) 		0.639
(0.723) 		0.0059
(0.0424) 		0.324
(0.454) 		0.554
(0.655) 		0.544
(0.646) 		0.287
(0.418)
RPL22 9 (2%) 384 0.0115
(0.0613) 		0.596
(0.689) 		0.645
(0.728) 		0.0058
(0.042) 		0.192
(0.323) 		0.00251
(0.0263) 		0.109
(0.228) 		1
(1.00) 		1
(1.00) 		0.823
(0.875)
TRAM1L1 15 (4%) 378 0.02
(0.0842) 		0.00287
(0.0286) 		0.59
(0.683) 		0.0202
(0.0848) 		0.289
(0.419) 		0.0692
(0.174) 		0.721
(0.791) 		0.459
(0.572) 		0.137
(0.262) 		0.48
(0.591)
ERBB4 49 (12%) 344 0.141
(0.267) 		0.00461
(0.0367) 		0.853
(0.898) 		0.0019
(0.0224) 		0.0898
(0.203) 		0.21
(0.342) 		0.202
(0.334) 		0.18
(0.308) 		0.485
(0.595) 		0.025
(0.0965)
SNRNP35 6 (2%) 387 0.0233
(0.0921) 		0.0696
(0.175) 		0.0949
(0.209) 		0.191
(0.322) 		0.344
(0.472) 		0.0397
(0.125) 		0.111
(0.232) 		0.546
(0.647) 		0.459
(0.572) 		0.00675
(0.0453)
PTPN4 12 (3%) 381 0.0165
(0.0749) 		0.265
(0.395) 		0.312
(0.442) 		0.134
(0.26) 		0.311
(0.442) 		0.0124
(0.0638) 		0.0286
(0.104) 		0.19
(0.321) 		0.493
(0.6) 		0.0557
(0.154)
TNFRSF9 10 (3%) 383 0.119
(0.241) 		0.454
(0.568) 		0.287
(0.418) 		0.271
(0.402) 		0.00048
(0.0104) 		0.0218
(0.0888) 		0.415
(0.533) 		0.131
(0.256) 		0.282
(0.413) 		0.021
(0.0864)
GPR141 11 (3%) 382 0.0181
(0.0791) 		0.016
(0.0737) 		0.376
(0.5) 		0.00092
(0.0148) 		0.0656
(0.169) 		0.243
(0.375) 		0.204
(0.336) 		0.313
(0.444) 		0.056
(0.154) 		0.473
(0.585)
IPO11 11 (3%) 382 0.035
(0.116) 		0.133
(0.259) 		0.0124
(0.0638) 		0.0183
(0.0794) 		0.203
(0.335) 		0.81
(0.863) 		0.447
(0.563) 		0.597
(0.689) 		0.281
(0.412) 		0.162
(0.29)
PMEPA1 6 (2%) 387 0.00957
(0.0554) 		0.0684
(0.173) 		0.334
(0.463) 		0.0296
(0.106) 		0.251
(0.383) 		0.00769
(0.0489) 		0.0629
(0.165) 		0.142
(0.268) 		0.211
(0.343) 		0.0689
(0.174)
LARP1B 12 (3%) 381 0.0283
(0.104) 		0.00851
(0.0516) 		0.186
(0.316) 		0.042
(0.129) 		0.832
(0.882) 		0.384
(0.507) 		0.367
(0.492) 		0.317
(0.447) 		0.602
(0.693) 		0.222
(0.354)
RING1 8 (2%) 385 0.0772
(0.186) 		0.382
(0.505) 		0.27
(0.401) 		0.883
(0.923) 		0.203
(0.335) 		0.715
(0.786) 		0.00981
(0.0561) 		0.259
(0.389) 		0.018
(0.0791) 		0.0454
(0.135)
DDX60 15 (4%) 378 0.00034
(0.00823) 		0.125
(0.249) 		0.1
(0.217) 		0.00257
(0.0266) 		0.0001
(0.00389) 		0.264
(0.395) 		0.217
(0.349) 		0.21
(0.342) 		0.0997
(0.216) 		0.291
(0.421)
ACTL6A 8 (2%) 385 0.00543
(0.0405) 		0.00831
(0.0508) 		0.252
(0.383) 		0.0368
(0.12) 		0.288
(0.419) 		0.44
(0.556) 		0.302
(0.433) 		0.173
(0.301) 		0.346
(0.473) 		0.316
(0.446)
DNAJC1 11 (3%) 382 0.00014
(0.00477) 		0.055
(0.152) 		0.317
(0.446) 		0.0383
(0.123) 		0.0737
(0.181) 		0.06
(0.16) 		0.024
(0.0939) 		0.0858
(0.198) 		0.509
(0.615) 		0.222
(0.354)
CADPS2 10 (3%) 383 0.151
(0.278) 		0.265
(0.396) 		0.351
(0.477) 		0.0443
(0.133) 		0.031
(0.108) 		0.00816
(0.0502) 		0.229
(0.36) 		0.372
(0.496) 		0.603
(0.694) 		0.0585
(0.158)
C16ORF63 8 (2%) 385 0.0704
(0.176) 		0.0156
(0.0729) 		0.516
(0.622) 		0.0249
(0.0963) 		0.0105
(0.058) 		0.0715
(0.177) 		0.461
(0.573) 		0.23
(0.36) 		0.253
(0.384) 		0.311
(0.442)
PAMR1 15 (4%) 378 0.0369
(0.121) 		0.375
(0.499) 		0.108
(0.227) 		0.00385
(0.0335) 		0.418
(0.535) 		0.754
(0.819) 		0.0283
(0.104) 		0.0648
(0.168) 		1
(1.00) 		0.579
(0.676)
GPR82 9 (2%) 384 0.15
(0.277) 		0.0892
(0.202) 		0.23
(0.361) 		0.00353
(0.0323) 		0.0149
(0.0709) 		0.0389
(0.124) 		0.184
(0.314) 		0.585
(0.68) 		0.433
(0.549) 		0.618
(0.708)
MMP10 9 (2%) 384 0.00292
(0.029) 		0.154
(0.281) 		0.0194
(0.0823) 		0.11
(0.23) 		0.58
(0.677) 		0.04
(0.126) 		0.605
(0.696) 		0.168
(0.297) 		1
(1.00) 		0.197
(0.327)
C11ORF70 4 (1%) 389 0.459
(0.572) 		0.173
(0.301) 		0.698
(0.772) 		0.0125
(0.0643) 		0.0159
(0.0734) 		0.0234
(0.0923) 		0.318
(0.447) 		0.394
(0.515) 		0.254
(0.384) 		0.563
(0.663)
AKAP11 15 (4%) 378 0.0386
(0.123) 		0.439
(0.555) 		0.17
(0.299) 		0.0609
(0.162) 		0.166
(0.295) 		0.00423
(0.0349) 		0.246
(0.377) 		0.21
(0.342) 		0.285
(0.416) 		0.0102
(0.0571)
KCTD3 14 (4%) 379 0.0321
(0.111) 		0.0388
(0.124) 		0.382
(0.505) 		2e-05
(0.00161) 		0.713
(0.785) 		0.489
(0.598) 		0.412
(0.531) 		0.43
(0.548) 		0.829
(0.881) 		0.834
(0.882)
RALGAPB 17 (4%) 376 0.0156
(0.0729) 		0.00625
(0.0436) 		0.0778
(0.187) 		8e-05
(0.00338) 		0.983
(1.00) 		0.109
(0.228) 		0.27
(0.4) 		0.416
(0.534) 		0.602
(0.693) 		0.809
(0.863)
NCOA7 16 (4%) 377 0.0808
(0.191) 		0.53
(0.634) 		0.29
(0.42) 		0.0217
(0.0884) 		0.053
(0.149) 		0.315
(0.445) 		0.0429
(0.131) 		0.647
(0.729) 		0.0315
(0.109) 		0.479
(0.59)
CD79A 7 (2%) 386 0.00387
(0.0335) 		0.357
(0.482) 		0.399
(0.518) 		0.363
(0.488) 		0.0111
(0.06) 		0.706
(0.778) 		0.00646
(0.0442) 		0.877
(0.918) 		0.0854
(0.198) 		0.053
(0.149)
C22ORF30 6 (2%) 387 0.00992
(0.0564) 		0.442
(0.558) 		0.385
(0.508) 		0.011
(0.0596) 		0.172
(0.3) 		0.806
(0.86) 		0.0286
(0.104) 		0.401
(0.52) 		0.087
(0.199) 		0.0539
(0.15)
PLAG1 12 (3%) 381 0.00022
(0.0065) 		0.676
(0.753) 		0.613
(0.704) 		0.532
(0.635) 		0.786
(0.845) 		0.974
(1.00) 		0.0103
(0.0574) 		0.191
(0.321) 		0.347
(0.473) 		0.0365
(0.12)
FASTKD1 12 (3%) 381 0.00785
(0.0493) 		0.136
(0.262) 		0.052
(0.147) 		0.132
(0.256) 		0.452
(0.567) 		0.174
(0.301) 		0.0565
(0.155) 		0.119
(0.241) 		0.0255
(0.0976) 		0.01
(0.0567)
RELT 7 (2%) 386 0.0566
(0.155) 		0.0122
(0.0637) 		0.542
(0.645) 		0.058
(0.157) 		0.0503
(0.144) 		0.00219
(0.0243) 		0.0254
(0.0975) 		0.293
(0.422) 		0.578
(0.676) 		0.423
(0.54)
HAUS3 11 (3%) 382 0.0353
(0.117) 		0.223
(0.354) 		0.0787
(0.188) 		0.198
(0.329) 		0.827
(0.879) 		0.25
(0.382) 		0.0212
(0.0872) 		0.171
(0.299) 		0.0567
(0.155) 		0.0411
(0.127)
GLIPR1L2 13 (3%) 380 0.00557
(0.0411) 		0.306
(0.436) 		0.0711
(0.177) 		0.0414
(0.128) 		0.157
(0.284) 		0.152
(0.279) 		0.00812
(0.0501) 		0.402
(0.521) 		0.0684
(0.173) 		0.0694
(0.174)
CDH24 14 (4%) 379 0.157
(0.284) 		0.0305
(0.107) 		0.647
(0.729) 		0.138
(0.264) 		0.0936
(0.208) 		0.00073
(0.013) 		0.217
(0.349) 		0.0521
(0.147) 		1
(1.00) 		0.0157
(0.0729)
C6ORF150 8 (2%) 385 0.698
(0.772) 		0.449
(0.565) 		0.724
(0.793) 		0.142
(0.268) 		0.0241
(0.0943) 		0.0406
(0.127) 		0.031
(0.108) 		0.49
(0.598) 		0.299
(0.429) 		0.482
(0.593)
HTR1E 12 (3%) 381 0.293
(0.423) 		0.0306
(0.108) 		0.0995
(0.216) 		0.0104
(0.0578) 		0.376
(0.5) 		0.287
(0.418) 		0.0812
(0.191) 		0.0373
(0.121) 		0.14
(0.266) 		0.179
(0.308)
NCAPH 12 (3%) 381 0.0172
(0.0769) 		0.338
(0.466) 		0.17
(0.299) 		0.0969
(0.212) 		0.109
(0.229) 		0.533
(0.636) 		0.00168
(0.021) 		0.921
(0.954) 		0.126
(0.25) 		0.00662
(0.0449)
TRIP11 13 (3%) 380 0.0792
(0.188) 		0.408
(0.526) 		0.031
(0.108) 		0.0105
(0.0584) 		0.165
(0.294) 		0.0205
(0.0854) 		0.398
(0.518) 		0.693
(0.768) 		0.141
(0.267) 		0.397
(0.517)
ASAP2 16 (4%) 377 0.0396
(0.125) 		0.0206
(0.0855) 		0.451
(0.566) 		0.0242
(0.0944) 		0.276
(0.407) 		1
(1.00) 		0.298
(0.429) 		0.179
(0.307) 		0.212
(0.344) 		0.467
(0.579)
ANKRD28 13 (3%) 380 0.00441
(0.0357) 		0.0429
(0.131) 		0.738
(0.804) 		0.0864
(0.199) 		0.0404
(0.127) 		0.727
(0.796) 		0.966
(0.993) 		0.212
(0.344) 		0.775
(0.837) 		0.103
(0.22)
HRNR 42 (11%) 351 0.318
(0.447) 		0.0134
(0.0667) 		0.287
(0.418) 		0.354
(0.48) 		0.0293
(0.106) 		0.105
(0.223) 		0.25
(0.382) 		0.187
(0.318) 		0.148
(0.275) 		0.0231
(0.0913)
C1RL 6 (2%) 387 0.127
(0.252) 		0.454
(0.569) 		0.0127
(0.0648) 		0.00363
(0.0326) 		0.625
(0.713) 		0.00388
(0.0336) 		0.202
(0.333) 		0.544
(0.646) 		0.226
(0.357) 		0.114
(0.235)
ZBTB38 20 (5%) 373 0.00156
(0.02) 		0.0954
(0.21) 		0.129
(0.254) 		0.646
(0.728) 		0.514
(0.62) 		0.115
(0.236) 		0.15
(0.277) 		0.271
(0.402) 		0.0131
(0.0659) 		0.00142
(0.0192)
CFI 13 (3%) 380 0.288
(0.419) 		0.45
(0.566) 		0.817
(0.87) 		0.135
(0.261) 		0.00657
(0.0447) 		0.0334
(0.113) 		0.0451
(0.134) 		0.13
(0.255) 		1
(1.00) 		0.593
(0.685)
TH1L 11 (3%) 382 0.007
(0.0463) 		0.683
(0.759) 		0.639
(0.722) 		0.0948
(0.209) 		0.00765
(0.0488) 		0.831
(0.881) 		0.0285
(0.104) 		0.319
(0.448) 		0.116
(0.237) 		0.198
(0.328)
HEXDC 8 (2%) 385 0.0711
(0.177) 		0.0423
(0.13) 		0.0138
(0.0677) 		0.0498
(0.143) 		0.279
(0.411) 		0.069
(0.174) 		0.398
(0.517) 		0.169
(0.299) 		0.581
(0.677) 		0.783
(0.843)
SOS2 18 (5%) 375 0.0021
(0.0238) 		0.301
(0.431) 		0.877
(0.918) 		0.24
(0.372) 		0.0351
(0.117) 		0.00448
(0.036) 		0.483
(0.593) 		0.191
(0.322) 		0.426
(0.543) 		0.152
(0.278)
STX2 6 (2%) 387 0.0101
(0.0568) 		0.0244
(0.0949) 		0.423
(0.54) 		0.00168
(0.021) 		0.174
(0.301) 		0.0928
(0.207) 		0.128
(0.253) 		0.224
(0.355) 		0.578
(0.675) 		0.196
(0.327)
SOAT1 10 (3%) 383 0.00031
(0.00787) 		0.0465
(0.137) 		0.316
(0.446) 		0.0763
(0.185) 		0.0874
(0.2) 		0.012
(0.0628) 		0.218
(0.35) 		0.0901
(0.203) 		0.064
(0.167) 		0.0501
(0.143)
AP2A2 14 (4%) 379 0.0147
(0.0702) 		0.00095
(0.0152) 		0.607
(0.698) 		0.149
(0.276) 		0.0246
(0.0954) 		0.0707
(0.176) 		0.464
(0.576) 		0.219
(0.351) 		0.347
(0.473) 		0.624
(0.712)
CTSD 8 (2%) 385 0.196
(0.327) 		0.0516
(0.147) 		0.58
(0.677) 		0.0533
(0.149) 		0.0195
(0.0827) 		0.0185
(0.0802) 		0.691
(0.767) 		0.485
(0.595) 		0.0574
(0.156) 		0.00124
(0.0178)
STEAP2 6 (2%) 387 0.352
(0.479) 		0.0645
(0.167) 		0.413
(0.531) 		0.00224
(0.0245) 		0.00629
(0.0437) 		0.00304
(0.0294) 		0.0637
(0.166) 		0.14
(0.266) 		0.227
(0.359) 		0.236
(0.368)
HSP90AA1 12 (3%) 381 0.134
(0.26) 		0.0173
(0.0769) 		0.115
(0.235) 		0.0307
(0.108) 		0.0739
(0.181) 		0.00509
(0.0389) 		0.361
(0.486) 		0.316
(0.446) 		0.38
(0.504) 		0.301
(0.431)
PRPF4B 10 (3%) 383 0.00572
(0.0416) 		0.16
(0.288) 		0.462
(0.575) 		0.0406
(0.127) 		0.218
(0.35) 		0.0215
(0.0878) 		0.104
(0.221) 		0.377
(0.501) 		0.0762
(0.185) 		0.59
(0.683)
KDM3B 20 (5%) 373 0.0164
(0.0747) 		0.144
(0.27) 		0.0481
(0.14) 		0.0136
(0.067) 		0.0711
(0.177) 		0.399
(0.518) 		0.43
(0.547) 		0.283
(0.415) 		0.413
(0.531) 		0.177
(0.305)
PRICKLE4 6 (2%) 387 0.0227
(0.0906) 		0.452
(0.567) 		0.342
(0.469) 		0.342
(0.469) 		0.267
(0.398) 		0.161
(0.289) 		0.00096
(0.0152) 		0.395
(0.516) 		0.253
(0.384) 		0.0328
(0.112)
SDAD1 8 (2%) 385 0.0224
(0.0901) 		0.0406
(0.127) 		0.763
(0.827) 		0.0528
(0.148) 		0.125
(0.249) 		0.0337
(0.114) 		0.436
(0.552) 		0.228
(0.359) 		0.557
(0.657) 		0.305
(0.436)
FRYL 24 (6%) 369 0.00206
(0.0235) 		0.258
(0.388) 		0.303
(0.433) 		0.0971
(0.212) 		0.0945
(0.209) 		0.0313
(0.109) 		0.00086
(0.0143) 		0.0678
(0.172) 		0.0947
(0.209) 		0.056
(0.154)
SPANXC 8 (2%) 385 0.0778
(0.186) 		0.081
(0.191) 		0.45
(0.566) 		0.002
(0.0231) 		0.00186
(0.0221) 		0.00015
(0.00497) 		0.0509
(0.145) 		0.258
(0.388) 		0.252
(0.383) 		0.169
(0.299)
XRN1 24 (6%) 369 0.00343
(0.0316) 		0.0425
(0.13) 		0.196
(0.327) 		0.069
(0.174) 		0.144
(0.271) 		0.209
(0.341) 		0.0119
(0.0626) 		0.395
(0.515) 		0.0585
(0.158) 		0.615
(0.705)
FAM123C 13 (3%) 380 5e-05
(0.00258) 		0.0519
(0.147) 		0.108
(0.228) 		0.232
(0.363) 		0.112
(0.232) 		0.138
(0.263) 		0.0147
(0.0703) 		0.596
(0.689) 		0.0287
(0.104) 		0.19
(0.321)
CHD1 13 (3%) 380 0.115
(0.236) 		0.0939
(0.208) 		0.497
(0.604) 		0.00476
(0.0374) 		0.0905
(0.204) 		0.0112
(0.0602) 		0.0337
(0.114) 		0.131
(0.256) 		0.173
(0.301) 		0.193
(0.323)
MASTL 13 (3%) 380 0.075
(0.183) 		0.216
(0.347) 		0.463
(0.575) 		0.35
(0.477) 		0.00118
(0.0174) 		0.899
(0.937) 		0.0374
(0.122) 		0.131
(0.256) 		0.00415
(0.0346) 		0.075
(0.183)
C15ORF52 6 (2%) 387 0.0275
(0.102) 		0.0203
(0.085) 		0.135
(0.261) 		0.172
(0.3) 		0.455
(0.569) 		0.0327
(0.112) 		0.231
(0.362) 		0.143
(0.269) 		0.846
(0.892) 		0.0617
(0.163)
KIAA1609 8 (2%) 385 0.022
(0.0892) 		0.111
(0.231) 		0.378
(0.502) 		0.0143
(0.0689) 		0.017
(0.0763) 		0.0715
(0.177) 		0.355
(0.481) 		0.629
(0.715) 		0.146
(0.272) 		0.314
(0.444)
NAGPA 7 (2%) 386 0.194
(0.325) 		0.356
(0.482) 		0.249
(0.381) 		0.585
(0.681) 		0.356
(0.482) 		0.0339
(0.114) 		0.101
(0.218) 		0.388
(0.51) 		0.0464
(0.137) 		0.0108
(0.059)
CEP110 15 (4%) 378 0.00829
(0.0507) 		0.0134
(0.0667) 		0.159
(0.286) 		0.145
(0.271) 		0.596
(0.689) 		0.00888
(0.0532) 		0.287
(0.418) 		0.162
(0.29) 		0.255
(0.385) 		0.229
(0.36)
AP3M2 12 (3%) 381 0.00796
(0.0496) 		0.0148
(0.0705) 		0.932
(0.964) 		0.00284
(0.0284) 		0.161
(0.289) 		0.103
(0.22) 		0.0942
(0.208) 		0.921
(0.954) 		0.878
(0.918) 		0.342
(0.469)
CRAT 12 (3%) 381 0.00793
(0.0496) 		0.0556
(0.154) 		0.171
(0.3) 		0.23
(0.36) 		0.308
(0.438) 		0.535
(0.638) 		0.116
(0.236) 		0.0384
(0.123) 		0.047
(0.138) 		0.0868
(0.199)
MBD2 9 (2%) 384 0.0109
(0.0594) 		0.0301
(0.107) 		0.753
(0.818) 		0.0032
(0.0303) 		0.924
(0.957) 		0.116
(0.236) 		0.252
(0.383) 		0.171
(0.3) 		0.16
(0.288) 		0.121
(0.244)
IGFBP7 4 (1%) 389 0.103
(0.221) 		0.182
(0.312) 		0.0856
(0.198) 		0.0177
(0.0782) 		0.0477
(0.139) 		0.397
(0.516) 		0.458
(0.571) 		0.0434
(0.132)
AOC3 11 (3%) 382 0.00013
(0.00462) 		0.0717
(0.177) 		0.444
(0.56) 		0.0289
(0.105) 		0.341
(0.468) 		0.0111
(0.0599) 		0.0651
(0.168) 		0.169
(0.298) 		0.661
(0.74) 		0.123
(0.247)
ANKRD23 6 (2%) 387 0.00997
(0.0566) 		0.0805
(0.191) 		0.958
(0.986) 		0.0249
(0.0962) 		0.17
(0.299) 		0.00731
(0.0475) 		0.178
(0.306) 		0.228
(0.359) 		0.142
(0.268) 		0.113
(0.233)
ARMC4 18 (5%) 375 0.0386
(0.123) 		0.0704
(0.176) 		0.426
(0.543) 		0.00486
(0.0379) 		0.0669
(0.171) 		0.0265
(0.1) 		0.281
(0.412) 		1
(1.00) 		0.576
(0.674) 		0.341
(0.468)
ITGAE 15 (4%) 378 0.00331
(0.0308) 		0.00882
(0.053) 		0.136
(0.262) 		0.0715
(0.177) 		0.587
(0.681) 		0.128
(0.252) 		0.0596
(0.16) 		0.0663
(0.17) 		0.227
(0.359) 		0.0182
(0.0794)
SLA 6 (2%) 387 0.00972
(0.0559) 		0.0306
(0.108) 		1
(1.00) 		0.0928
(0.207) 		0.00284
(0.0284) 		0.0961
(0.211) 		0.784
(0.843) 		0.225
(0.357) 		0.117
(0.238) 		0.669
(0.747)
PTPN3 15 (4%) 378 0.00128
(0.0181) 		0.0144
(0.0696) 		0.689
(0.765) 		0.155
(0.282) 		0.0887
(0.201) 		0.00898
(0.0535) 		0.318
(0.447) 		0.457
(0.571) 		1
(1.00) 		0.146
(0.273)
PHACTR2 15 (4%) 378 0.0795
(0.189) 		0.00082
(0.0138) 		0.676
(0.753) 		0.026
(0.0992) 		0.015
(0.0712) 		0.106
(0.224) 		0.841
(0.889) 		0.939
(0.97) 		1
(1.00) 		0.871
(0.914)
MRPL24 6 (2%) 387 0.0265
(0.1) 		0.082
(0.192) 		0.361
(0.487) 		0.362
(0.487) 		0.454
(0.568) 		0.0305
(0.107) 		0.011
(0.0596) 		0.545
(0.647) 		0.253
(0.384) 		0.0531
(0.149)
ARHGEF5 7 (2%) 386 0.00926
(0.0546) 		0.134
(0.26) 		0.274
(0.405) 		0.0501
(0.143) 		0.0205
(0.0855) 		0.191
(0.322) 		0.0235
(0.0925) 		0.074
(0.181) 		0.159
(0.287) 		0.197
(0.327)
B4GALNT4 18 (5%) 375 0.00044
(0.00974) 		0.239
(0.37) 		0.917
(0.951) 		0.177
(0.305) 		0.127
(0.251) 		0.0393
(0.125) 		0.0827
(0.193) 		0.0658
(0.169) 		0.627
(0.714) 		0.00463
(0.0368)
ARHGEF17 22 (6%) 371 0.00065
(0.0123) 		0.0603
(0.161) 		0.833
(0.882) 		0.403
(0.521) 		0.0277
(0.103) 		0.0697
(0.175) 		0.566
(0.665) 		0.656
(0.736) 		0.645
(0.728) 		0.0445
(0.134)
GPR114 9 (2%) 384 0.0304
(0.107) 		0.106
(0.225) 		0.325
(0.455) 		0.215
(0.347) 		0.458
(0.571) 		0.0362
(0.119) 		0.0014
(0.019) 		0.588
(0.682) 		0.9
(0.938) 		0.15
(0.277)
AMELX 5 (1%) 388 0.454
(0.569) 		0.0205
(0.0855) 		0.35
(0.476) 		0.0572
(0.156) 		0.0212
(0.0872) 		0.0962
(0.211) 		0.0562
(0.155) 		1
(1.00) 		0.0127
(0.065) 		0.567
(0.666)
BANK1 11 (3%) 382 0.22
(0.352) 		0.00848
(0.0516) 		0.755
(0.82) 		0.0661
(0.17) 		0.165
(0.294) 		0.0188
(0.0808) 		0.0394
(0.125) 		0.84
(0.888) 		0.489
(0.598) 		0.313
(0.443)
ZNF441 9 (2%) 384 0.0113
(0.0606) 		0.215
(0.347) 		0.15
(0.277) 		0.00164
(0.0207) 		0.0372
(0.121) 		0.106
(0.225) 		0.162
(0.29) 		0.17
(0.299) 		0.578
(0.675) 		0.124
(0.248)
DGAT1 9 (2%) 384 0.00331
(0.0308) 		0.195
(0.326) 		0.268
(0.398) 		0.345
(0.473) 		0.552
(0.653) 		0.0055
(0.0408) 		0.103
(0.22) 		0.342
(0.469) 		0.472
(0.584) 		0.0412
(0.128)
NOP2 8 (2%) 385 0.0708
(0.176) 		0.00389
(0.0336) 		0.262
(0.392) 		0.44
(0.556) 		0.181
(0.31) 		0.103
(0.221) 		0.00404
(0.0341) 		0.228
(0.359) 		0.0302
(0.107) 		0.155
(0.282)
IRS4 24 (6%) 369 0.112
(0.232) 		0.0837
(0.195) 		0.0947
(0.209) 		1e-05
(0.000978) 		0.00733
(0.0476) 		0.0424
(0.13) 		0.198
(0.328) 		0.17
(0.299) 		0.733
(0.802) 		0.115
(0.236)
NUAK1 18 (5%) 375 0.0368
(0.12) 		0.0533
(0.149) 		0.0841
(0.196) 		0.00232
(0.025) 		0.137
(0.262) 		0.102
(0.218) 		0.06
(0.16) 		0.0877
(0.2) 		0.0682
(0.173) 		0.0406
(0.127)
NHSL2 6 (2%) 387 0.118
(0.24) 		0.191
(0.322) 		0.414
(0.532) 		0.00278
(0.0282) 		0.0609
(0.162) 		0.269
(0.4) 		0.119
(0.241) 		0.399
(0.518) 		0.0226
(0.0904) 		0.0015
(0.0197)
KCNK13 11 (3%) 382 0.136
(0.261) 		0.0387
(0.123) 		0.196
(0.326) 		0.0497
(0.143) 		0.146
(0.273) 		0.00136
(0.0187) 		0.217
(0.349) 		0.916
(0.951) 		1
(1.00) 		0.623
(0.711)
GIMAP7 5 (1%) 388 0.071
(0.177) 		0.0201
(0.0845) 		0.107
(0.226) 		0.00356
(0.0324) 		0.118
(0.239) 		0.0468
(0.138) 		0.0551
(0.153) 		0.246
(0.377) 		0.0857
(0.198) 		0.0535
(0.15)
STAU1 10 (3%) 383 0.00032
(0.00794) 		0.0246
(0.0954) 		0.166
(0.295) 		0.134
(0.259) 		0.533
(0.636) 		0.118
(0.24) 		0.00111
(0.0167) 		0.753
(0.818) 		0.657
(0.737) 		0.24
(0.371)
INSIG2 7 (2%) 386 0.00381
(0.0333) 		0.0299
(0.107) 		0.151
(0.277) 		0.0115
(0.0613) 		0.456
(0.57) 		0.19
(0.321) 		0.267
(0.398) 		0.874
(0.916) 		0.735
(0.803) 		0.902
(0.939)
BRAF 18 (5%) 375 0.00235
(0.0251) 		0.0226
(0.0904) 		0.339
(0.467) 		0.347
(0.474) 		0.00665
(0.0451) 		0.201
(0.333) 		0.0998
(0.216) 		0.0669
(0.171) 		0.509
(0.615) 		0.445
(0.561)
MLXIPL 13 (3%) 380 0.0129
(0.0654) 		0.0702
(0.176) 		0.221
(0.352) 		0.00556
(0.0411) 		0.264
(0.394) 		0.717
(0.787) 		0.0346
(0.116) 		0.929
(0.96) 		0.83
(0.881) 		0.723
(0.793)
SLC9A1 12 (3%) 381 0.00271
(0.0277) 		0.00839
(0.0511) 		0.483
(0.594) 		0.252
(0.383) 		0.256
(0.386) 		0.171
(0.299) 		0.282
(0.413) 		0.922
(0.955) 		0.0458
(0.136) 		0.48
(0.591)
CSNK1G3 9 (2%) 384 0.00094
(0.0151) 		0.0462
(0.137) 		0.332
(0.461) 		0.00931
(0.0547) 		0.327
(0.456) 		0.257
(0.387) 		0.162
(0.29) 		0.0967
(0.212) 		0.431
(0.548) 		0.145
(0.272)
ITGB8 15 (4%) 378 0.0353
(0.117) 		0.0387
(0.123) 		0.26
(0.39) 		0.0966
(0.211) 		0.0884
(0.201) 		0.0292
(0.106) 		0.0815
(0.192) 		0.521
(0.626) 		0.131
(0.256) 		0.065
(0.168)
ADAMTS18 29 (7%) 364 0.00197
(0.0229) 		2e-05
(0.00161) 		0.608
(0.699) 		0.206
(0.338) 		0.00075
(0.0131) 		0.142
(0.268) 		0.189
(0.32) 		0.316
(0.445) 		0.259
(0.389) 		0.215
(0.347)
MINA 8 (2%) 385 0.0023
(0.0248) 		0.039
(0.124) 		0.415
(0.533) 		0.142
(0.268) 		0.253
(0.383) 		0.152
(0.279) 		0.00058
(0.0116) 		0.26
(0.39) 		0.338
(0.466) 		0.26
(0.39)
CYTH3 6 (2%) 387 0.0263
(0.1) 		0.82
(0.873) 		1
(1.00) 		0.843
(0.891) 		0.0208
(0.0861) 		0.0201
(0.0844) 		0.281
(0.412)
EXOSC8 6 (2%) 387 0.11
(0.23) 		0.329
(0.459) 		0.387
(0.509) 		0.0111
(0.0598) 		0.0164
(0.0748) 		0.0337
(0.114) 		0.0799
(0.19) 		0.14
(0.266) 		0.462
(0.574) 		0.527
(0.631)
FANCA 12 (3%) 381 0.0287
(0.105) 		0.122
(0.245) 		0.146
(0.272) 		5e-05
(0.00258) 		0.0381
(0.123) 		0.257
(0.387) 		0.617
(0.707) 		0.19
(0.321) 		0.238
(0.369) 		0.11
(0.23)
SMPD1 6 (2%) 387 0.0265
(0.1) 		0.0747
(0.182) 		0.286
(0.417) 		0.0171
(0.0766) 		0.455
(0.569) 		0.0173
(0.0769) 		0.492
(0.6) 		0.14
(0.266) 		0.457
(0.571) 		0.319
(0.448)
SCGB1A1 3 (1%) 390 0.711
(0.783) 		0.183
(0.313) 		0.57
(0.668) 		0.00383
(0.0334) 		0.159
(0.286) 		0.0175
(0.0777) 		0.0978
(0.213) 		0.588
(0.682) 		0.185
(0.315) 		0.00691
(0.046)
EPN1 8 (2%) 385 0.00227
(0.0247) 		0.0119
(0.0624) 		0.174
(0.302) 		0.114
(0.235) 		0.219
(0.35) 		0.0171
(0.0765) 		0.0655
(0.169) 		0.259
(0.389) 		0.433
(0.55) 		0.0807
(0.191)
ARNT 8 (2%) 385 0.0707
(0.176) 		0.496
(0.604) 		0.364
(0.489) 		0.00087
(0.0144) 		0.0166
(0.075) 		0.0128
(0.0653) 		0.829
(0.881) 		0.487
(0.597) 		0.306
(0.436) 		0.153
(0.28)
CSNK2A2 8 (2%) 385 0.155
(0.282) 		0.395
(0.516) 		0.448
(0.564) 		0.00045
(0.00985) 		0.0159
(0.0734) 		0.206
(0.338) 		0.279
(0.41) 		0.489
(0.598) 		0.00291
(0.0289) 		0.154
(0.281)
MAP4K4 13 (3%) 380 0.125
(0.248) 		0.23
(0.361) 		0.548
(0.649) 		0.0339
(0.114) 		0.258
(0.388) 		0.625
(0.713) 		0.0396
(0.125) 		0.0434
(0.132) 		0.628
(0.715) 		0.301
(0.432)
SAFB 8 (2%) 385 0.00474
(0.0373) 		0.161
(0.289) 		0.146
(0.272) 		0.00992
(0.0564) 		0.402
(0.52) 		0.0465
(0.137) 		0.962
(0.99) 		0.71
(0.782) 		0.557
(0.657) 		0.476
(0.588)
KLHL1 15 (4%) 378 0.61
(0.7) 		0.521
(0.626) 		0.00132
(0.0183) 		0.00693
(0.046) 		0.932
(0.963) 		0.953
(0.982) 		0.226
(0.357) 		0.674
(0.752) 		0.652
(0.733) 		0.0458
(0.136)
SLC22A16 11 (3%) 382 0.00703
(0.0465) 		0.0796
(0.189) 		0.113
(0.234) 		0.00427
(0.0351) 		0.0526
(0.148) 		0.114
(0.235) 		0.13
(0.255) 		0.0621
(0.164) 		0.174
(0.302) 		0.0108
(0.0593)
NHLRC2 7 (2%) 386 0.00379
(0.0333) 		0.0242
(0.0944) 		0.0638
(0.166) 		0.00039
(0.00902) 		0.226
(0.357) 		0.055
(0.152) 		0.0802
(0.19) 		0.215
(0.347) 		0.162
(0.29) 		0.122
(0.245)
NEK7 6 (2%) 387 0.0262
(0.0996) 		0.0746
(0.182) 		0.251
(0.382) 		0.133
(0.258) 		0.283
(0.414) 		0.0406
(0.127) 		0.121
(0.244) 		0.281
(0.412) 		0.252
(0.383) 		0.00652
(0.0446)
SLC25A45 9 (2%) 384 0.0937
(0.208) 		0.612
(0.702) 		0.801
(0.857) 		0.132
(0.257) 		0.0106
(0.0585) 		0.661
(0.74) 		0.019
(0.0814) 		0.585
(0.68) 		0.347
(0.474) 		0.041
(0.127)
TMEFF2 10 (3%) 383 0.168
(0.297) 		0.459
(0.572) 		0.198
(0.329) 		0.13
(0.255) 		0.00072
(0.0129) 		0.489
(0.598) 		0.058
(0.157) 		0.0784
(0.187) 		0.0189
(0.0813) 		0.00191
(0.0224)
PGBD1 14 (4%) 379 7e-05
(0.00325) 		0.0659
(0.169) 		0.0244
(0.095) 		0.00025
(0.007) 		0.0826
(0.193) 		0.255
(0.385) 		0.15
(0.277) 		0.0938
(0.208) 		0.175
(0.303) 		0.15
(0.277)
DENND4C 16 (4%) 377 0.0451
(0.134) 		0.0401
(0.126) 		0.0999
(0.216) 		0.00895
(0.0534) 		0.2
(0.33) 		0.142
(0.268) 		0.223
(0.355) 		0.399
(0.518) 		0.0684
(0.173) 		0.851
(0.896)
PKD2L2 10 (3%) 383 0.0134
(0.0667) 		0.634
(0.719) 		0.176
(0.303) 		0.287
(0.418) 		0.0355
(0.117) 		0.0168
(0.0756) 		0.208
(0.34) 		0.0885
(0.201) 		0.284
(0.415) 		0.0864
(0.199)
FGF13 15 (4%) 378 0.0196
(0.0831) 		0.197
(0.327) 		0.564
(0.664) 		0.303
(0.433) 		0.0399
(0.126) 		0.347
(0.474) 		0.00646
(0.0442) 		0.372
(0.496) 		0.312
(0.442) 		0.219
(0.35)
ARID5B 15 (4%) 378 0.234
(0.365) 		0.241
(0.372) 		0.0759
(0.184) 		0.0228
(0.0908) 		0.281
(0.412) 		0.106
(0.225) 		0.72
(0.789) 		0.0349
(0.116) 		0.172
(0.3) 		0.039
(0.124)
CARD14 13 (3%) 380 0.00072
(0.0129) 		0.449
(0.565) 		0.217
(0.349) 		0.798
(0.854) 		0.657
(0.737) 		0.361
(0.486) 		0.00032
(0.00794) 		0.597
(0.69) 		0.0488
(0.141) 		0.285
(0.416)
C13ORF18 10 (3%) 383 1
(1.00) 		0.372
(0.496) 		0.444
(0.559) 		0.912
(0.947) 		0.00607
(0.0429) 		0.014
(0.0684) 		0.0356
(0.118) 		0.42
(0.537) 		1
(1.00) 		0.392
(0.513)
ETV1 8 (2%) 385 0.153
(0.28) 		0.222
(0.354) 		0.256
(0.386) 		0.00023
(0.00666) 		0.0292
(0.106) 		0.0163
(0.0744) 		0.402
(0.521) 		0.491
(0.599) 		0.116
(0.237) 		0.553
(0.654)
AP3B1 9 (2%) 384 0.0308
(0.108) 		0.181
(0.311) 		0.0157
(0.0731) 		0.0166
(0.075) 		0.09
(0.203) 		0.0698
(0.175) 		0.16
(0.288) 		0.169
(0.299) 		0.6
(0.692) 		0.431
(0.549)
EFHC1 10 (3%) 383 0.0336
(0.114) 		0.195
(0.326) 		0.118
(0.24) 		0.0471
(0.138) 		0.134
(0.259) 		0.813
(0.867) 		0.141
(0.268) 		0.751
(0.817) 		0.126
(0.25) 		0.00751
(0.0482)
BBS10 9 (2%) 384 0.00319
(0.0303) 		0.234
(0.365) 		0.677
(0.754) 		0.00376
(0.0333) 		0.0822
(0.193) 		0.0229
(0.091) 		0.482
(0.593) 		0.211
(0.343) 		0.143
(0.269) 		0.0697
(0.175)
TCERG1 12 (3%) 381 0.00949
(0.0552) 		0.127
(0.251) 		0.371
(0.495) 		0.0138
(0.0677) 		0.0951
(0.209) 		0.812
(0.866) 		0.152
(0.279) 		0.0376
(0.122) 		0.171
(0.299) 		0.0562
(0.155)
NCAN 25 (6%) 368 0.00577
(0.0418) 		0.00034
(0.00823) 		0.5
(0.607) 		0.00935
(0.0549) 		0.0718
(0.177) 		0.155
(0.281) 		0.332
(0.461) 		0.183
(0.312) 		0.158
(0.285) 		0.192
(0.323)
C3ORF33 7 (2%) 386 0.129
(0.254) 		0.126
(0.25) 		0.389
(0.51) 		0.022
(0.089) 		0.0499
(0.143) 		0.0113
(0.0606) 		0.717
(0.787) 		0.384
(0.507) 		0.433
(0.55) 		0.406
(0.524)
ZNF428 5 (1%) 388 0.0624
(0.164) 		0.02
(0.0842) 		0.57
(0.668) 		0.0582
(0.157) 		0.0849
(0.197) 		0.0178
(0.0785) 		0.0505
(0.144) 		0.247
(0.379) 		0.213
(0.345) 		0.00103
(0.016)
ANKRD42 8 (2%) 385 0.0224
(0.0901) 		0.135
(0.261) 		0.78
(0.84) 		0.00391
(0.0336) 		0.52
(0.625) 		0.193
(0.324) 		0.00405
(0.0341) 		0.625
(0.713) 		0.186
(0.317) 		0.169
(0.299)
TDG 6 (2%) 387 0.111
(0.232) 		0.774
(0.836) 		0.00308
(0.0297) 		0.0118
(0.0622) 		0.171
(0.3) 		1
(1.00) 		0.717
(0.787) 		1
(1.00) 		0.333
(0.462) 		0.0235
(0.0925)
ATOH1 6 (2%) 387 0.0095
(0.0552) 		0.273
(0.404) 		0.0274
(0.102) 		0.366
(0.491) 		0.0791
(0.188) 		0.0648
(0.168) 		0.00549
(0.0408) 		0.144
(0.27) 		0.0864
(0.199) 		0.0541
(0.151)
USP30 9 (2%) 384 0.0225
(0.0903) 		0.0267
(0.101) 		0.249
(0.381) 		0.131
(0.256) 		0.119
(0.241) 		0.238
(0.369) 		0.00602
(0.0428) 		0.17
(0.299) 		0.489
(0.598) 		0.0892
(0.202)
DHX15 11 (3%) 382 0.00691
(0.046) 		0.325
(0.454) 		0.048
(0.14) 		0.00457
(0.0364) 		0.339
(0.467) 		0.392
(0.513) 		0.066
(0.169) 		0.918
(0.951) 		0.346
(0.473) 		0.828
(0.879)
LARP7 18 (5%) 375 0.0469
(0.138) 		0.146
(0.273) 		0.422
(0.539) 		0.00758
(0.0485) 		0.316
(0.446) 		0.107
(0.226) 		0.435
(0.551) 		0.644
(0.726) 		0.411
(0.529) 		0.249
(0.381)
FAM9A 12 (3%) 381 0.00444
(0.0358) 		0.374
(0.498) 		0.623
(0.712) 		0.355
(0.481) 		0.262
(0.391) 		0.333
(0.462) 		0.24
(0.371) 		0.0383
(0.123) 		0.278
(0.41) 		0.27
(0.401)
DSTN 7 (2%) 386 0.35
(0.477) 		0.0718
(0.178) 		1
(1.00) 		0.0963
(0.211) 		0.679
(0.756) 		0.0924
(0.207) 		0.0203
(0.0848) 		0.0739
(0.181) 		0.849
(0.894) 		0.0376
(0.122)
CYP27B1 9 (2%) 384 0.167
(0.296) 		0.185
(0.316) 		0.709
(0.782) 		0.00771
(0.049) 		0.0115
(0.0613) 		0.232
(0.363) 		0.652
(0.733) 		0.658
(0.738) 		0.0569
(0.155) 		0.605
(0.696)
NAPEPLD 10 (3%) 383 0.0136
(0.067) 		0.0949
(0.209) 		0.9
(0.938) 		0.413
(0.531) 		0.0291
(0.105) 		0.133
(0.259) 		0.148
(0.275) 		0.115
(0.236) 		0.057
(0.155) 		0.25
(0.382)
RHOQ 5 (1%) 388 0.0312
(0.109) 		0.185
(0.316) 		0.258
(0.388) 		0.584
(0.68) 		0.532
(0.635) 		0.331
(0.461) 		0.136
(0.261) 		0.833
(0.882) 		0.185
(0.316) 		0.00705
(0.0465)
LEMD1 4 (1%) 389 0.147
(0.275) 		0.0704
(0.176) 		0.775
(0.837) 		0.00392
(0.0336) 		0.0862
(0.199) 		0.187
(0.317) 		0.318
(0.447) 		0.398
(0.517) 		0.0598
(0.16) 		0.00862
(0.0521)
CR1L 16 (4%) 377 0.229
(0.36) 		0.359
(0.484) 		0.971
(0.998) 		0.847
(0.893) 		0.427
(0.544) 		0.708
(0.781) 		0.00422
(0.0349) 		0.939
(0.97) 		0.00943
(0.0551) 		0.387
(0.509)
STK38 6 (2%) 387 0.11
(0.229) 		0.162
(0.29) 		0.176
(0.304) 		0.00075
(0.0131) 		0.0102
(0.0572) 		0.0671
(0.171) 		0.0995
(0.216) 		0.139
(0.265) 		0.211
(0.343) 		0.112
(0.232)
SLC12A9 20 (5%) 373 4e-05
(0.00234) 		0.0352
(0.117) 		0.154
(0.281) 		0.127
(0.251) 		0.738
(0.805) 		0.167
(0.297) 		0.457
(0.57) 		0.471
(0.583) 		0.586
(0.681) 		0.0943
(0.209)
CABP5 6 (2%) 387 0.194
(0.325) 		0.0214
(0.0875) 		0.168
(0.297) 		0.00045
(0.00985) 		0.102
(0.219) 		0.15
(0.277) 		0.25
(0.382) 		0.402
(0.521) 		0.847
(0.893) 		0.564
(0.664)
MED15 18 (5%) 375 0.00038
(0.00887) 		0.0524
(0.148) 		0.337
(0.466) 		0.139
(0.265) 		0.0646
(0.167) 		0.046
(0.136) 		0.337
(0.466) 		0.0999
(0.216) 		0.0942
(0.208) 		0.378
(0.502)
PIGB 10 (3%) 383 0.00024
(0.00678) 		0.134
(0.259) 		0.233
(0.364) 		0.0096
(0.0555) 		0.0644
(0.167) 		0.638
(0.722) 		0.0562
(0.154) 		0.0764
(0.185) 		0.661
(0.74) 		0.632
(0.718)
RTKN2 11 (3%) 382 0.00015
(0.00497) 		0.151
(0.278) 		0.221
(0.353) 		0.133
(0.259) 		0.0133
(0.0663) 		0.283
(0.414) 		0.206
(0.338) 		0.241
(0.373) 		0.38
(0.504) 		0.524
(0.628)
EAF2 9 (2%) 384 0.0033
(0.0308) 		0.00613
(0.0431) 		0.751
(0.817) 		0.675
(0.752) 		0.458
(0.571) 		0.0827
(0.193) 		0.591
(0.684) 		0.586
(0.681) 		0.251
(0.382) 		0.312
(0.442)
TCHP 12 (3%) 381 0.0465
(0.137) 		0.227
(0.358) 		0.767
(0.83) 		0.00013
(0.00462) 		0.435
(0.551) 		0.254
(0.385) 		0.151
(0.278) 		0.205
(0.337) 		0.468
(0.581) 		0.177
(0.305)
SNAPC1 8 (2%) 385 0.0226
(0.0904) 		0.00812
(0.0501) 		0.169
(0.299) 		0.479
(0.59) 		0.0636
(0.166) 		0.064
(0.167) 		0.101
(0.218) 		0.262
(0.391) 		0.088
(0.201) 		0.196
(0.326)
RAB42 5 (1%) 388 0.0289
(0.105) 		0.0689
(0.174) 		1
(1.00) 		0.244
(0.375) 		0.319
(0.448) 		0.333
(0.462) 		0.0306
(0.108) 		1
(1.00) 		1
(1.00) 		0.0919
(0.206)
MOBKL1A 6 (2%) 387 0.0725
(0.179) 		0.332
(0.461) 		0.958
(0.986) 		0.479
(0.59) 		0.13
(0.255) 		0.808
(0.863) 		0.00488
(0.038) 		0.399
(0.518) 		0.228
(0.359) 		0.0223
(0.0899)
ANKRD34A 11 (3%) 382 0.0128
(0.0652) 		0.169
(0.299) 		0.598
(0.69) 		0.101
(0.218) 		0.235
(0.366) 		0.332
(0.461) 		0.629
(0.716) 		0.488
(0.598) 		0.345
(0.473) 		0.0147
(0.0703)
CASP8 18 (5%) 375 0.00059
(0.0117) 		0.0216
(0.0882) 		0.47
(0.582) 		0.108
(0.228) 		0.0605
(0.161) 		0.0538
(0.15) 		0.152
(0.279) 		0.454
(0.568) 		0.508
(0.615) 		0.65
(0.732)
NWD1 32 (8%) 361 0.486
(0.596) 		0.00728
(0.0474) 		0.664
(0.742) 		0.282
(0.413) 		0.0262
(0.0996) 		0.162
(0.29) 		0.269
(0.4) 		0.29
(0.42) 		0.727
(0.796) 		0.79
(0.848)
PPIP5K2 14 (4%) 379 0.0651
(0.168) 		0.657
(0.737) 		0.875
(0.916) 		0.0155
(0.0727) 		0.356
(0.482) 		0.437
(0.553) 		0.00143
(0.0192) 		0.0523
(0.147) 		0.126
(0.25) 		0.589
(0.682)
TMEM41B 5 (1%) 388 0.0302
(0.107) 		0.184
(0.314) 		0.698
(0.773) 		0.0116
(0.0618) 		0.154
(0.281) 		0.278
(0.41) 		0.0566
(0.155) 		0.831
(0.881) 		1
(1.00) 		0.171
(0.3)
KANK4 15 (4%) 378 0.0801
(0.19) 		0.00066
(0.0124) 		0.87
(0.913) 		0.176
(0.303) 		0.00741
(0.0479) 		0.114
(0.235) 		0.494
(0.601) 		0.21
(0.343) 		0.545
(0.647) 		0.199
(0.33)
STAT6 6 (2%) 387 0.0101
(0.0568) 		0.0695
(0.175) 		0.889
(0.927) 		0.0143
(0.0692) 		0.287
(0.418) 		0.207
(0.339) 		0.25
(0.382) 		0.227
(0.359) 		1
(1.00) 		0.476
(0.587)
YY1 8 (2%) 385 0.023
(0.0911) 		0.25
(0.382) 		1
(1.00) 		0.731
(0.799) 		0.39
(0.511) 		0.355
(0.48) 		0.569
(0.667) 		0.0333
(0.113) 		0.387
(0.509) 		0.403
(0.522)
TRUB1 11 (3%) 382 0.00685
(0.0458) 		0.232
(0.363) 		0.391
(0.512) 		0.129
(0.255) 		0.0298
(0.106) 		0.333
(0.462) 		0.113
(0.234) 		0.312
(0.442) 		0.281
(0.412) 		0.0873
(0.2)
CDKN2A 16 (4%) 377 0.946
(0.975) 		0.249
(0.381) 		0.11
(0.229) 		0.533
(0.636) 		0.303
(0.433) 		0.88
(0.92) 		0.0674
(0.172) 		0.325
(0.455) 		0.0147
(0.0702) 		0.0371
(0.121)
NHLRC1 12 (3%) 381 0.00493
(0.0382) 		0.182
(0.312) 		0.377
(0.501) 		0.333
(0.462) 		0.053
(0.149) 		0.119
(0.241) 		0.0382
(0.123) 		0.922
(0.955) 		0.435
(0.552) 		0.922
(0.955)
USP26 22 (6%) 371 8e-05
(0.00338) 		0.062
(0.164) 		0.48
(0.591) 		0.228
(0.359) 		0.0159
(0.0736) 		0.0725
(0.179) 		0.484
(0.595) 		0.695
(0.77) 		0.458
(0.571) 		0.678
(0.755)
ERF 16 (4%) 377 0.0208
(0.0861) 		0.232
(0.363) 		0.861
(0.905) 		0.2
(0.33) 		0.0413
(0.128) 		0.363
(0.488) 		0.414
(0.532) 		0.886
(0.926) 		0.099
(0.215) 		0.64
(0.723)
TAS2R10 4 (1%) 389 1
(1.00) 		0.45
(0.566) 		0.0565
(0.155) 		0.134
(0.26) 		0.781
(0.841) 		0.149
(0.275) 		0.0111
(0.06) 		0.818
(0.871) 		0.462
(0.574) 		0.00659
(0.0448)
HIAT1 9 (2%) 384 0.0508
(0.145) 		0.165
(0.294) 		0.588
(0.682) 		0.00231
(0.0249) 		0.522
(0.626) 		0.0103
(0.0575) 		0.486
(0.596) 		0.0994
(0.216) 		0.0996
(0.216) 		0.237
(0.368)
SYCP1 23 (6%) 370 0.0761
(0.185) 		0.171
(0.3) 		0.0644
(0.167) 		0.0118
(0.0624) 		5e-05
(0.00258) 		0.153
(0.28) 		0.0993
(0.216) 		0.958
(0.986) 		0.285
(0.416) 		0.389
(0.51)
KIAA0240 13 (3%) 380 0.0228
(0.0908) 		0.823
(0.875) 		0.262
(0.392) 		0.0381
(0.123) 		0.804
(0.859) 		0.475
(0.587) 		0.219
(0.35) 		1
(1.00) 		0.911
(0.946) 		0.552
(0.653)
PPP1R15A 5 (1%) 388 0.0293
(0.106) 		0.234
(0.365) 		0.767
(0.83) 		0.0937
(0.208) 		0.17
(0.299) 		0.208
(0.34) 		0.0391
(0.124) 		0.831
(0.882) 		0.555
(0.656) 		0.237
(0.368)
SH3KBP1 15 (4%) 378 0.0789
(0.188) 		0.5
(0.607) 		0.446
(0.561) 		0.00706
(0.0465) 		0.375
(0.499) 		0.258
(0.388) 		0.0407
(0.127) 		0.0655
(0.169) 		0.0763
(0.185) 		0.151
(0.278)
SYNCRIP 15 (4%) 378 0.138
(0.264) 		0.151
(0.278) 		0.34
(0.468) 		0.00444
(0.0358) 		0.0272
(0.102) 		0.473
(0.585) 		0.125
(0.249) 		0.771
(0.834) 		0.34
(0.468) 		0.713
(0.784)
TM7SF4 19 (5%) 374 0.0582
(0.157) 		0.00465
(0.0369) 		0.272
(0.403) 		0.00438
(0.0355) 		0.122
(0.245) 		0.395
(0.516) 		0.359
(0.485) 		0.134
(0.26) 		0.2
(0.331) 		0.0593
(0.159)
MAP2K7 27 (7%) 366 0.0141
(0.0685) 		0.00064
(0.0122) 		0.159
(0.287) 		0.128
(0.253) 		0.0844
(0.196) 		0.129
(0.254) 		0.132
(0.257) 		0.156
(0.283) 		1
(1.00) 		0.12
(0.242)
TRMT6 7 (2%) 386 0.0571
(0.156) 		0.774
(0.836) 		0.348
(0.475) 		0.0182
(0.0794) 		0.22
(0.351) 		0.664
(0.742) 		0.209
(0.341) 		0.44
(0.556) 		0.463
(0.575) 		0.0445
(0.134)
EIF5A2 5 (1%) 388 0.0288
(0.105) 		0.0824
(0.193) 		0.417
(0.534) 		0.269
(0.4) 		0.727
(0.796) 		0.0484
(0.141) 		0.885
(0.924) 		0.835
(0.883) 		0.637
(0.72) 		0.312
(0.442)
C19ORF70 6 (2%) 387 0.519
(0.624) 		0.0827
(0.193) 		0.0672
(0.171) 		0.0637
(0.166) 		0.377
(0.501) 		0.0467
(0.138) 		0.51
(0.616) 		0.144
(0.27) 		0.737
(0.804) 		0.00628
(0.0436)
GPR161 12 (3%) 381 0.029
(0.105) 		0.154
(0.281) 		0.0945
(0.209) 		0.0772
(0.186) 		0.196
(0.326) 		0.0249
(0.0961) 		0.103
(0.221) 		0.313
(0.443) 		0.903
(0.939) 		0.394
(0.515)
CCDC27 8 (2%) 385 0.0217
(0.0885) 		0.272
(0.402) 		0.422
(0.539) 		0.33
(0.46) 		0.127
(0.251) 		0.957
(0.986) 		0.57
(0.668) 		0.711
(0.783) 		0.0148
(0.0705) 		0.0767
(0.185)
SGK3 7 (2%) 386 0.057
(0.155) 		0.174
(0.302) 		0.266
(0.396) 		0.00141
(0.0191) 		0.139
(0.265) 		0.00176
(0.0216) 		0.253
(0.384) 		0.0748
(0.182) 		0.617
(0.707) 		0.261
(0.391)
C16ORF70 6 (2%) 387 0.00921
(0.0544) 		0.0689
(0.174) 		0.096
(0.211) 		0.0209
(0.0862) 		0.726
(0.795) 		0.224
(0.356) 		0.388
(0.51) 		0.14
(0.266) 		0.556
(0.656) 		0.545
(0.647)
BCKDHA 10 (3%) 383 0.0233
(0.0919) 		0.34
(0.468) 		0.237
(0.368) 		0.293
(0.423) 		0.0874
(0.2) 		0.0456
(0.136) 		0.119
(0.241) 		0.337
(0.465) 		0.55
(0.651) 		0.25
(0.382)
HAX1 5 (1%) 388 0.03
(0.107) 		0.441
(0.557) 		0.46
(0.573) 		0.761
(0.825) 		0.0423
(0.13) 		0.87
(0.913) 		0.0565
(0.155) 		0.487
(0.597) 		0.212
(0.344) 		0.407
(0.526)
SRP72 14 (4%) 379 0.00013
(0.00462) 		0.0839
(0.195) 		0.948
(0.978) 		0.758
(0.823) 		0.222
(0.353) 		0.0109
(0.0595) 		0.885
(0.924) 		0.503
(0.61) 		0.119
(0.241) 		0.153
(0.28)
RBMX 10 (3%) 383 0.00151
(0.0197) 		0.0401
(0.126) 		0.713
(0.784) 		0.398
(0.517) 		0.276
(0.408) 		0.381
(0.505) 		0.338
(0.466) 		0.681
(0.757) 		0.509
(0.615) 		0.831
(0.882)
MRE11A 7 (2%) 386 0.15
(0.277) 		0.136
(0.261) 		0.209
(0.342) 		0.012
(0.0627) 		0.676
(0.753) 		0.232
(0.363) 		0.00598
(0.0427) 		0.388
(0.51) 		0.212
(0.344) 		0.405
(0.524)
IGF2BP3 7 (2%) 386 0.352
(0.479) 		0.0421
(0.13) 		1
(1.00) 		0.0933
(0.208) 		0.011
(0.0596) 		0.0557
(0.154) 		0.0766
(0.185) 		0.214
(0.346) 		0.0761
(0.185) 		0.114
(0.234)
ABCE1 10 (3%) 383 0.0236
(0.0926) 		0.104
(0.221) 		0.396
(0.516) 		0.0563
(0.155) 		0.895
(0.933) 		0.297
(0.427) 		0.918
(0.951) 		0.374
(0.498) 		0.578
(0.675) 		0.0136
(0.067)
USP35 8 (2%) 385 0.623
(0.712) 		0.00432
(0.0353) 		0.147
(0.274) 		0.00013
(0.00462) 		0.129
(0.254) 		0.353
(0.48) 		0.476
(0.588) 		1
(1.00) 		1
(1.00) 		0.921
(0.954)
KIAA0748 16 (4%) 377 0.233
(0.364) 		0.0286
(0.104) 		0.536
(0.639) 		0.101
(0.218) 		0.425
(0.542) 		0.136
(0.261) 		0.292
(0.422) 		0.136
(0.261) 		0.416
(0.534) 		0.00302
(0.0293)
TIMP3 9 (2%) 384 0.382
(0.505) 		0.179
(0.308) 		0.0721
(0.178) 		0.0183
(0.0796) 		0.351
(0.478) 		0.418
(0.535) 		0.0102
(0.0572) 		0.341
(0.469) 		0.299
(0.429) 		0.394
(0.515)
KRTAP5-5 6 (2%) 387 0.00987
(0.0563) 		0.231
(0.361) 		0.172
(0.3) 		0.175
(0.303) 		0.644
(0.726) 		0.269
(0.4) 		0.136
(0.262) 		0.401
(0.52) 		0.23
(0.361) 		0.0226
(0.0905)
C7ORF49 7 (2%) 386 0.0567
(0.155) 		0.0123
(0.0638) 		0.165
(0.294) 		0.0936
(0.208) 		0.0565
(0.155) 		0.0103
(0.0575) 		0.269
(0.4) 		0.387
(0.509) 		0.456
(0.57) 		0.321
(0.45)
PKN1 10 (3%) 383 0.0061
(0.043) 		0.0738
(0.181) 		0.754
(0.819) 		0.00989
(0.0563) 		0.243
(0.375) 		0.51
(0.617) 		0.0767
(0.185) 		0.279
(0.411) 		0.49
(0.598) 		0.281
(0.412)
METTL6 5 (1%) 388 0.029
(0.105) 		0.302
(0.433) 		0.415
(0.532) 		0.0644
(0.167) 		0.147
(0.274) 		0.0963
(0.211) 		0.011
(0.0596) 		0.833
(0.882) 		0.463
(0.575) 		0.169
(0.299)
AXIN2 20 (5%) 373 0.0305
(0.108) 		0.0643
(0.167) 		1
(1.00) 		0.22
(0.351) 		0.0203
(0.0848) 		0.249
(0.381) 		0.478
(0.589) 		1
(1.00) 		1
(1.00) 		0.494
(0.601)
UNC50 4 (1%) 389 0.104
(0.222) 		0.185
(0.315) 		0.572
(0.67) 		0.675
(0.753) 		0.0382
(0.123) 		0.0404
(0.127) 		0.21
(0.343) 		0.395
(0.516) 		0.462
(0.574) 		0.172
(0.3)
SPATA5L1 6 (2%) 387 0.109
(0.229) 		0.00217
(0.0241) 		0.699
(0.773) 		0.0472
(0.138) 		0.0589
(0.159) 		0.154
(0.281) 		0.833
(0.882) 		0.229
(0.36) 		0.737
(0.804) 		0.664
(0.742)
CDC42EP1 4 (1%) 389 1
(1.00) 		0.0697
(0.175) 		0.168
(0.297) 		0.00794
(0.0496) 		0.252
(0.383) 		0.0219
(0.0889) 		0.0982
(0.214) 		0.514
(0.62)
TMEM87B 5 (1%) 388 0.0291
(0.105) 		0.33
(0.46) 		0.129
(0.254) 		0.0489
(0.141) 		0.0727
(0.179) 		0.0856
(0.198) 		0.241
(0.372) 		0.247
(0.379) 		0.293
(0.423) 		0.234
(0.365)
IL7R 14 (4%) 379 0.156
(0.282) 		0.187
(0.318) 		0.367
(0.492) 		0.00431
(0.0353) 		0.0079
(0.0495) 		0.101
(0.218) 		0.218
(0.349) 		0.12
(0.242) 		0.602
(0.694) 		0.122
(0.245)
PRMT3 9 (2%) 384 0.0227
(0.0906) 		0.0851
(0.197) 		0.798
(0.854) 		0.823
(0.875) 		0.00595
(0.0426) 		0.0716
(0.177) 		0.365
(0.49) 		0.0971
(0.212) 		0.127
(0.251) 		0.182
(0.312)
FGF7 5 (1%) 388 0.0296
(0.106) 		0.0806
(0.191) 		0.417
(0.534) 		0.831
(0.881) 		0.26
(0.39) 		0.0478
(0.139) 		0.104
(0.221) 		0.832
(0.882) 		0.29
(0.42) 		0.542
(0.645)
FAM113A 9 (2%) 384 0.0115
(0.0615) 		0.566
(0.665) 		0.396
(0.516) 		0.385
(0.508) 		0.765
(0.829) 		0.0819
(0.192) 		0.0086
(0.0521) 		0.584
(0.68) 		0.252
(0.383) 		0.494
(0.601)
MKL1 15 (4%) 378 0.00117
(0.0173) 		0.125
(0.249) 		0.139
(0.265) 		0.00869
(0.0525) 		0.734
(0.802) 		0.377
(0.501) 		0.15
(0.277) 		0.939
(0.969) 		0.424
(0.541) 		0.804
(0.859)
ASPN 6 (2%) 387 0.0102
(0.0572) 		0.094
(0.208) 		0.205
(0.337) 		0.141
(0.268) 		0.683
(0.759) 		0.0321
(0.111) 		0.665
(0.744) 		0.545
(0.647) 		0.289
(0.419) 		0.0922
(0.206)
SYCP2L 13 (3%) 380 0.0268
(0.101) 		0.435
(0.552) 		0.367
(0.492) 		0.36
(0.486) 		0.469
(0.581) 		0.12
(0.242) 		0.0355
(0.117) 		1
(1.00) 		1
(1.00) 		0.617
(0.707)
DYX1C1 12 (3%) 381 0.0283
(0.104) 		0.125
(0.249) 		0.213
(0.345) 		0.0025
(0.0262) 		0.455
(0.569) 		0.689
(0.765) 		0.388
(0.51) 		0.347
(0.474) 		0.0984
(0.214) 		0.623
(0.712)
RSF1 15 (4%) 378 0.14
(0.266) 		0.00761
(0.0486) 		0.182
(0.312) 		0.0308
(0.108) 		0.512
(0.618) 		0.291
(0.421) 		0.0832
(0.194) 		0.163
(0.291) 		0.0766
(0.185) 		0.0813
(0.191)
TAF6 14 (4%) 379 0.00145
(0.0193) 		0.138
(0.263) 		0.44
(0.556) 		0.00389
(0.0336) 		0.0649
(0.168) 		0.0725
(0.179) 		0.233
(0.364) 		0.578
(0.675) 		0.392
(0.513) 		0.186
(0.316)
C9ORF41 5 (1%) 388 0.0309
(0.108) 		0.175
(0.303) 		0.846
(0.892) 		0.0943
(0.209) 		0.0279
(0.103) 		0.328
(0.458) 		0.259
(0.389) 		1
(1.00) 		0.254
(0.384) 		0.261
(0.391)
MYCN 7 (2%) 386 0.0571
(0.156) 		0.111
(0.232) 		0.36
(0.486) 		0.052
(0.147) 		0.0171
(0.0765) 		0.191
(0.322) 		0.0641
(0.167) 		0.215
(0.347) 		0.0754
(0.183) 		0.0307
(0.108)
CALCRL 10 (3%) 383 0.91
(0.945) 		0.0192
(0.0819) 		0.068
(0.173) 		0.00374
(0.0333) 		0.457
(0.571) 		0.884
(0.923) 		0.148
(0.275) 		0.117
(0.238) 		1
(1.00) 		0.482
(0.592)
AZGP1 4 (1%) 389 0.601
(0.692) 		0.451
(0.566) 		0.608
(0.699) 		0.0181
(0.0791) 		0.205
(0.337) 		0.0865
(0.199) 		0.277
(0.408) 		0.819
(0.872) 		0.29
(0.42) 		0.0129
(0.0653)
DOK1 5 (1%) 388 0.0733
(0.18) 		0.0699
(0.175) 		0.0893
(0.202) 		0.00366
(0.0329) 		0.146
(0.272) 		0.047
(0.138) 		0.229
(0.36) 		0.247
(0.378)
CDC5L 16 (4%) 377 0.00807
(0.05) 		0.41
(0.528) 		0.441
(0.557) 		0.0139
(0.068) 		0.0588
(0.158) 		0.085
(0.197) 		0.0941
(0.208) 		0.346
(0.473) 		0.312
(0.442) 		0.804
(0.859)
GPR45 16 (4%) 377 0.505
(0.612) 		0.15
(0.277) 		0.0621
(0.164) 		0.0266
(0.1) 		0.656
(0.737) 		0.337
(0.466) 		0.349
(0.475) 		0.0846
(0.196) 		0.34
(0.468) 		0.00258
(0.0267)
PAM 9 (2%) 384 0.00305
(0.0294) 		0.0231
(0.0914) 		0.386
(0.509) 		0.362
(0.487) 		0.325
(0.454) 		0.641
(0.724) 		0.0607
(0.161) 		0.0979
(0.213) 		0.116
(0.236) 		0.667
(0.745)
SLC6A11 10 (3%) 383 0.0236
(0.0928) 		0.272
(0.402) 		0.0897
(0.202) 		0.18
(0.308) 		0.495
(0.602) 		0.966
(0.994) 		0.17
(0.299) 		0.278
(0.41) 		0.0154
(0.0724) 		0.103
(0.221)
CD4 11 (3%) 382 0.00738
(0.0477) 		0.00296
(0.029) 		0.0732
(0.18) 		0.475
(0.587) 		0.0691
(0.174) 		0.172
(0.3) 		0.469
(0.582) 		0.596
(0.689) 		0.223
(0.354) 		0.636
(0.72)
GPATCH4 9 (2%) 384 0.34
(0.468) 		0.119
(0.241) 		0.314
(0.444) 		0.0443
(0.133) 		0.0774
(0.186) 		0.51
(0.617) 		0.0855
(0.198) 		0.34
(0.468) 		0.116
(0.236) 		0.0124
(0.0638)
MEN1 10 (3%) 383 0.0352
(0.117) 		0.65
(0.731) 		0.368
(0.492) 		0.095
(0.209) 		0.0426
(0.13) 		0.159
(0.286) 		0.13
(0.255) 		0.0762
(0.185) 		0.6
(0.692) 		0.269
(0.4)
MAPK15 8 (2%) 385 0.00507
(0.0387) 		0.173
(0.301) 		0.218
(0.35) 		0.287
(0.418) 		0.223
(0.355) 		0.104
(0.221) 		0.0268
(0.101) 		0.625
(0.713) 		0.229
(0.36) 		0.871
(0.914)
ATP6V1H 13 (3%) 380 0.0752
(0.183) 		0.0267
(0.101) 		0.844
(0.891) 		0.00142
(0.0192) 		0.14
(0.266) 		0.294
(0.424) 		0.478
(0.589) 		0.0582
(0.157) 		0.349
(0.475) 		0.17
(0.299)
LIMCH1 12 (3%) 381 0.143
(0.27) 		0.0366
(0.12) 		0.764
(0.828) 		0.476
(0.588) 		0.00634
(0.0438) 		0.398
(0.517) 		0.41
(0.528) 		0.347
(0.474) 		0.562
(0.662) 		0.488
(0.597)
KCNH4 11 (3%) 382 0.265
(0.395) 		0.0811
(0.191) 		0.701
(0.775) 		0.0017
(0.0211) 		0.13
(0.255) 		0.107
(0.226) 		0.306
(0.436) 		0.316
(0.446) 		0.0927
(0.207) 		0.00015
(0.00497)
ECSIT 6 (2%) 387 0.204
(0.336) 		0.698
(0.772) 		1
(1.00) 		0.0409
(0.127) 		0.432
(0.549) 		0.473
(0.585) 		0.0127
(0.0648) 		0.281
(0.413) 		0.683
(0.759) 		0.335
(0.464)
HAPLN1 9 (2%) 384 0.0312
(0.109) 		0.285
(0.416) 		0.638
(0.721) 		0.398
(0.518) 		0.357
(0.483) 		0.00598
(0.0427) 		0.485
(0.595) 		0.904
(0.94) 		0.552
(0.653) 		0.333
(0.462)
SOHLH2 17 (4%) 376 0.648
(0.73) 		0.024
(0.094) 		0.841
(0.889) 		0.648
(0.729) 		1
(1.00) 		0.357
(0.483) 		0.754
(0.819) 		0.441
(0.557) 		1
(1.00) 		0.0415
(0.128)
SLC26A7 15 (4%) 378 0.211
(0.344) 		0.425
(0.541) 		0.0983
(0.214) 		0.0977
(0.213) 		0.292
(0.422) 		0.0422
(0.13) 		0.499
(0.606) 		0.519
(0.625) 		0.586
(0.681) 		0.0413
(0.128)
DGKA 9 (2%) 384 0.166
(0.295) 		0.699
(0.773) 		0.25
(0.382) 		0.0102
(0.0571) 		0.719
(0.789) 		0.192
(0.323) 		0.00531
(0.0399) 		0.341
(0.468) 		0.212
(0.344) 		0.0592
(0.159)
BLMH 5 (1%) 388 0.694
(0.77) 		0.217
(0.348) 		0.141
(0.268) 		0.0473
(0.138) 		0.728
(0.796) 		0.542
(0.644) 		0.142
(0.268) 		0.833
(0.882) 		0.212
(0.344) 		0.00259
(0.0268)
CDC6 8 (2%) 385 0.426
(0.543) 		0.918
(0.952) 		0.118
(0.24) 		0.822
(0.875) 		0.786
(0.845) 		0.0465
(0.137) 		0.204
(0.336) 		0.793
(0.85) 		0.0317
(0.11) 		0.363
(0.489)
BAT4 5 (1%) 388 0.0473
(0.138) 		0.135
(0.26) 		0.529
(0.633) 		0.0401
(0.126) 		0.382
(0.505) 		0.0737
(0.181) 		0.823
(0.875) 		0.307
(0.437) 		0.736
(0.803) 		0.629
(0.716)
ZNF514 9 (2%) 384 0.0494
(0.142) 		0.054
(0.15) 		0.508
(0.614) 		0.00254
(0.0265) 		0.926
(0.958) 		0.536
(0.639) 		0.0691
(0.174) 		0.0962
(0.211) 		0.0853
(0.197) 		0.292
(0.422)
PCF11 22 (6%) 371 0.015
(0.0712) 		0.195
(0.326) 		0.0619
(0.163) 		0.0214
(0.0875) 		0.314
(0.444) 		0.373
(0.498) 		0.188
(0.319) 		0.578
(0.675) 		0.174
(0.302) 		0.566
(0.665)
MBNL2 11 (3%) 382 0.0169
(0.076) 		0.026
(0.099) 		0.235
(0.367) 		0.261
(0.391) 		0.349
(0.475) 		0.0605
(0.161) 		0.135
(0.261) 		0.842
(0.889) 		0.388
(0.51) 		0.499
(0.606)
SUCLG2 7 (2%) 386 0.00377
(0.0333) 		0.159
(0.287) 		0.707
(0.779) 		0.142
(0.268) 		0.716
(0.787) 		0.558
(0.658) 		0.0488
(0.141) 		0.769
(0.832) 		0.0853
(0.197) 		0.0683
(0.173)
KCNH2 14 (4%) 379 0.068
(0.173) 		0.384
(0.507) 		0.0706
(0.176) 		0.00805
(0.0499) 		0.141
(0.267) 		0.203
(0.335) 		0.0841
(0.196) 		0.0958
(0.211) 		0.128
(0.253) 		0.0268
(0.101)
FAHD2A 8 (2%) 385 0.00219
(0.0243) 		0.0828
(0.193) 		0.312
(0.442) 		0.0145
(0.0697) 		0.784
(0.843) 		0.132
(0.257) 		0.103
(0.221) 		0.625
(0.713) 		0.849
(0.895) 		0.112
(0.232)
SLC39A8 7 (2%) 386 0.0575
(0.156) 		0.0846
(0.196) 		0.206
(0.338) 		0.0444
(0.134) 		0.689
(0.765) 		0.54
(0.643) 		0.0662
(0.17) 		0.389
(0.51) 		0.161
(0.29) 		0.0221
(0.0894)
PLA2G15 10 (3%) 383 0.0057
(0.0416) 		0.127
(0.251) 		0.127
(0.252) 		0.00209
(0.0237) 		0.792
(0.849) 		0.439
(0.555) 		0.318
(0.447) 		0.374
(0.498) 		0.336
(0.465) 		0.339
(0.467)
ZNF800 12 (3%) 381 0.00487
(0.0379) 		0.568
(0.667) 		0.661
(0.741) 		0.473
(0.585) 		0.533
(0.636) 		0.673
(0.751) 		0.00342
(0.0316) 		0.521
(0.626) 		0.664
(0.743) 		0.267
(0.398)
YBX2 6 (2%) 387 0.203
(0.335) 		0.0639
(0.167) 		0.15
(0.277) 		0.483
(0.594) 		0.0287
(0.105) 		0.0385
(0.123) 		0.138
(0.264) 		0.14
(0.266) 		0.214
(0.346) 		0.0699
(0.175)
GOLT1B 5 (1%) 388 0.0304
(0.107) 		0.108
(0.227) 		0.0883
(0.201) 		0.363
(0.488) 		0.054
(0.15) 		0.0476
(0.139) 		0.833
(0.882) 		0.832
(0.882) 		1
(1.00) 		0.306
(0.436)
VPRBP 8 (2%) 385 0.0709
(0.176) 		0.476
(0.588) 		0.0982
(0.214) 		0.00964
(0.0556) 		0.0993
(0.216) 		0.118
(0.239) 		0.0102
(0.0571) 		0.625
(0.713) 		1
(1.00) 		0.871
(0.914)
FAM109B 7 (2%) 386 0.196
(0.326) 		0.246
(0.378) 		1
(1.00) 		0.146
(0.273) 		0.878
(0.918) 		0.714
(0.785) 		0.0182
(0.0793) 		0.387
(0.51) 		0.163
(0.29) 		0.0132
(0.0661)
CAB39L 7 (2%) 386 0.197
(0.327) 		0.0655
(0.169) 		0.59
(0.683) 		0.00355
(0.0323) 		0.06
(0.16) 		0.0393
(0.125) 		0.489
(0.598) 		0.384
(0.507) 		0.216
(0.347) 		0.0688
(0.174)
UGT2A3 7 (2%) 386 0.0558
(0.154) 		1
(1.00) 		0.804
(0.859) 		0.44
(0.556) 		0.643
(0.726) 		0.808
(0.862) 		0.0345
(0.115) 		0.388
(0.51) 		0.292
(0.422) 		0.00806
(0.0499)
BRF1 11 (3%) 382 0.205
(0.337) 		0.317
(0.447) 		0.944
(0.974) 		0.0128
(0.0653) 		0.957
(0.986) 		0.499
(0.606) 		0.0127
(0.0648) 		0.771
(0.833) 		0.49
(0.598) 		0.181
(0.31)
DUSP9 8 (2%) 385 0.793
(0.85) 		0.59
(0.683) 		0.134
(0.26) 		0.0109
(0.0594) 		0.585
(0.681) 		0.0432
(0.131) 		0.0509
(0.145) 		0.389
(0.51) 		0.3
(0.43) 		0.482
(0.592)
C9ORF25 5 (1%) 388 0.0464
(0.137) 		0.348
(0.474) 		0.107
(0.226) 		0.0495
(0.142) 		0.729
(0.797) 		0.871
(0.914) 		0.819
(0.872) 		0.487
(0.597) 		0.736
(0.803) 		0.562
(0.662)
POMGNT1 10 (3%) 383 0.695
(0.77) 		0.375
(0.499) 		0.019
(0.0814) 		0.39
(0.511) 		0.0711
(0.177) 		0.00383
(0.0334) 		0.228
(0.359) 		0.373
(0.497) 		0.0569
(0.155) 		0.179
(0.308)
ATP2B4 15 (4%) 378 0.0198
(0.0835) 		0.226
(0.357) 		0.422
(0.539) 		0.0108
(0.059) 		0.156
(0.282) 		0.106
(0.224) 		0.0857
(0.198) 		0.579
(0.676) 		0.123
(0.246) 		0.1
(0.217)
COL20A1 20 (5%) 373 0.113
(0.233) 		0.0692
(0.174) 		0.261
(0.391) 		0.0181
(0.0791) 		0.00027
(0.00734) 		0.0536
(0.15) 		0.452
(0.567) 		0.471
(0.583) 		0.658
(0.738) 		0.431
(0.548)
SEC16B 7 (2%) 386 0.149
(0.276) 		0.00627
(0.0436) 		0.78
(0.84) 		0.165
(0.294) 		0.138
(0.264) 		0.00205
(0.0235) 		0.36
(0.486) 		0.765
(0.829) 		0.833
(0.882) 		0.872
(0.914)
EMILIN3 14 (4%) 379 0.00173
(0.0213) 		0.247
(0.379) 		0.158
(0.286) 		0.162
(0.29) 		0.0326
(0.112) 		0.167
(0.297) 		0.104
(0.221) 		0.578
(0.675) 		0.213
(0.345) 		0.186
(0.316)
VPS4B 8 (2%) 385 0.00234
(0.0251) 		0.334
(0.463) 		0.373
(0.498) 		0.0434
(0.132) 		0.193
(0.324) 		0.443
(0.558) 		0.477
(0.589) 		0.264
(0.394) 		0.661
(0.74) 		0.339
(0.467)
SHMT2 10 (3%) 383 0.0357
(0.118) 		0.509
(0.616) 		0.138
(0.264) 		0.0158
(0.0732) 		0.0782
(0.187) 		0.532
(0.635) 		0.434
(0.551) 		1
(1.00) 		1
(1.00) 		1
(1.00)
BAG4 5 (1%) 388 0.0282
(0.104) 		0.186
(0.316) 		0.604
(0.695) 		0.245
(0.377) 		0.725
(0.794) 		0.226
(0.357) 		0.0333
(0.113) 		0.597
(0.689) 		0.79
(0.848) 		0.261
(0.39)
TYRO3 11 (3%) 382 0.0329
(0.112) 		0.161
(0.289) 		0.257
(0.387) 		0.227
(0.359) 		0.289
(0.419) 		0.577
(0.675) 		0.137
(0.263) 		0.0339
(0.114) 		0.603
(0.694) 		0.0595
(0.16)
IGFALS 9 (2%) 384 0.241
(0.372) 		0.532
(0.635) 		0.0411
(0.128) 		0.0768
(0.185) 		0.738
(0.805) 		0.246
(0.377) 		0.42
(0.537) 		0.38
(0.504) 		0.0602
(0.161) 		0.0227
(0.0907)
ZMYND19 8 (2%) 385 0.00425
(0.0349) 		0.238
(0.369) 		0.445
(0.561) 		0.0598
(0.16) 		0.214
(0.346) 		0.416
(0.533) 		0.172
(0.3) 		0.627
(0.714) 		0.341
(0.468) 		0.0285
(0.104)
UBE2Q1 7 (2%) 386 0.15
(0.276) 		0.737
(0.804) 		0.436
(0.553) 		0.00352
(0.0322) 		0.13
(0.255) 		0.0516
(0.147) 		0.0731
(0.18) 		0.389
(0.51) 		0.253
(0.383) 		0.0435
(0.132)
E2F7 20 (5%) 373 0.00287
(0.0286) 		0.11
(0.23) 		0.33
(0.46) 		0.486
(0.596) 		0.0548
(0.152) 		0.568
(0.667) 		0.0473
(0.138) 		0.427
(0.544) 		0.121
(0.244) 		0.553
(0.654)
NRIP3 7 (2%) 386 0.00387
(0.0335) 		0.143
(0.268) 		0.323
(0.452) 		0.0429
(0.131) 		0.52
(0.626) 		0.135
(0.261) 		0.0961
(0.211) 		0.0739
(0.181) 		0.227
(0.359) 		0.304
(0.435)
CWF19L2 14 (4%) 379 0.00156
(0.02) 		0.0755
(0.184) 		0.391
(0.512) 		0.0264
(0.1) 		0.575
(0.673) 		0.331
(0.461) 		0.463
(0.575) 		0.577
(0.675) 		0.0759
(0.184) 		0.0636
(0.166)
ZDHHC7 7 (2%) 386 0.00402
(0.034) 		0.00602
(0.0428) 		0.625
(0.713) 		0.361
(0.486) 		0.152
(0.279) 		0.104
(0.222) 		0.145
(0.271) 		0.213
(0.345) 		1
(1.00) 		0.668
(0.746)
NTAN1 5 (1%) 388 0.0292
(0.105) 		0.329
(0.459) 		0.227
(0.359) 		0.27
(0.401) 		0.00314
(0.0301) 		0.871
(0.914) 		0.101
(0.218) 		0.833
(0.882) 		0.254
(0.384) 		0.148
(0.275)
SLC38A6 8 (2%) 385 0.251
(0.382) 		0.0782
(0.187) 		0.297
(0.428) 		0.0593
(0.159) 		0.00225
(0.0246) 		0.114
(0.234) 		0.358
(0.483) 		0.17
(0.299) 		0.0363
(0.119) 		0.266
(0.396)
EVI5 10 (3%) 383 0.0134
(0.0667) 		0.101
(0.218) 		0.0154
(0.0723) 		0.0676
(0.172) 		0.114
(0.234) 		0.214
(0.346) 		0.355
(0.481) 		0.752
(0.817) 		0.0664
(0.17) 		0.537
(0.64)
IGDCC4 13 (3%) 380 0.465
(0.577) 		0.339
(0.467) 		0.323
(0.452) 		0.292
(0.422) 		0.0175
(0.0777) 		0.231
(0.362) 		0.0342
(0.115) 		0.289
(0.419) 		0.432
(0.549) 		0.584
(0.68)
SPATA2L 6 (2%) 387 0.0269
(0.101) 		0.162
(0.29) 		0.823
(0.875) 		0.0579
(0.157) 		0.207
(0.34) 		0.926
(0.958) 		0.0695
(0.175) 		0.546
(0.647) 		0.00613
(0.0431) 		0.112
(0.232)
NPR3 10 (3%) 383 0.025
(0.0965) 		0.495
(0.602) 		0.123
(0.246) 		0.0138
(0.0676) 		0.829
(0.881) 		0.834
(0.882) 		0.0599
(0.16) 		0.131
(0.256) 		0.66
(0.74) 		0.631
(0.717)
CDH11 32 (8%) 361 0.707
(0.779) 		0.00128
(0.0181) 		0.818
(0.872) 		0.237
(0.368) 		0.0001
(0.00389) 		0.175
(0.302) 		0.0561
(0.154) 		0.127
(0.251) 		0.239
(0.371) 		0.137
(0.262)
MSL3 9 (2%) 384 0.0491
(0.142) 		0.0747
(0.182) 		0.525
(0.628) 		0.45
(0.566) 		0.0175
(0.0777) 		0.0569
(0.155) 		0.484
(0.594) 		0.21
(0.342) 		0.551
(0.652) 		0.361
(0.486)
ACTG2 10 (3%) 383 0.166
(0.295) 		0.615
(0.705) 		0.0215
(0.0879) 		0.141
(0.267) 		0.57
(0.668) 		0.236
(0.367) 		0.0105
(0.058) 		0.256
(0.386) 		0.337
(0.466) 		0.327
(0.456)
PIGO 9 (2%) 384 0.031
(0.108) 		0.0809
(0.191) 		0.25
(0.382) 		0.0609
(0.162) 		0.0235
(0.0924) 		0.081
(0.191) 		0.148
(0.275) 		0.588
(0.682) 		0.704
(0.777) 		0.938
(0.969)
NRN1 3 (1%) 390 0.717
(0.788) 		0.184
(0.314) 		0.485
(0.595) 		0.00413
(0.0345) 		0.16
(0.288) 		0.189
(0.32) 		0.00306
(0.0295) 		0.587
(0.681) 		1
(1.00) 		0.168
(0.297)
C1ORF141 12 (3%) 381 0.175
(0.303) 		0.542
(0.645) 		0.0929
(0.207) 		0.0407
(0.127) 		0.391
(0.512) 		0.00149
(0.0196) 		0.392
(0.513) 		0.19
(0.321) 		0.469
(0.581) 		0.157
(0.284)
EXOSC10 12 (3%) 381 0.0534
(0.149) 		0.263
(0.393) 		0.958
(0.986) 		0.962
(0.99) 		0.00087
(0.0144) 		0.0194
(0.0823) 		0.0856
(0.198) 		0.189
(0.32) 		0.634
(0.719) 		0.317
(0.447)
SYNJ1 11 (3%) 382 0.0528
(0.148) 		0.268
(0.4) 		0.176
(0.303) 		0.0005
(0.0106) 		0.497
(0.604) 		0.0575
(0.156) 		0.165
(0.294) 		0.238
(0.37) 		0.381
(0.505) 		0.0394
(0.125)
HEPACAM2 8 (2%) 385 0.00632
(0.0438) 		1
(1.00) 		0.797
(0.854) 		0.398
(0.518) 		0.139
(0.265) 		0.00206
(0.0235) 		0.547
(0.647) 		0.172
(0.3) 		0.631
(0.717) 		0.567
(0.666)
B4GALT6 6 (2%) 387 0.518
(0.624) 		0.216
(0.348) 		0.152
(0.279) 		0.0116
(0.0615) 		0.0935
(0.208) 		0.00383
(0.0334) 		0.114
(0.235) 		0.634
(0.719) 		0.253
(0.384) 		0.0674
(0.172)
ABLIM2 14 (4%) 379 0.0146
(0.07) 		0.061
(0.162) 		0.22
(0.352) 		0.0265
(0.1) 		0.502
(0.609) 		0.139
(0.265) 		0.486
(0.596) 		0.577
(0.675) 		0.629
(0.715) 		0.0868
(0.199)
CEACAM3 9 (2%) 384 0.0712
(0.177) 		0.154
(0.281) 		0.369
(0.494) 		0.0125
(0.0643) 		0.129
(0.254) 		0.354
(0.48) 		0.167
(0.296) 		0.028
(0.103) 		0.0555
(0.153) 		0.102
(0.22)
CLGN 9 (2%) 384 0.0123
(0.0638) 		0.163
(0.291) 		0.128
(0.253) 		0.00188
(0.0223) 		0.187
(0.318) 		0.411
(0.529) 		0.061
(0.162) 		0.0963
(0.211) 		0.251
(0.382) 		0.083
(0.194)
FCN2 10 (3%) 383 0.0357
(0.118) 		0.0883
(0.201) 		0.202
(0.334) 		0.00441
(0.0357) 		0.364
(0.489) 		0.149
(0.276) 		0.328
(0.458) 		0.752
(0.818) 		0.902
(0.939) 		0.431
(0.548)
DEK 8 (2%) 385 0.192
(0.323) 		0.0344
(0.115) 		0.152
(0.279) 		0.00957
(0.0554) 		0.0527
(0.148) 		0.158
(0.285) 		0.269
(0.4) 		0.627
(0.714) 		0.161
(0.289) 		0.195
(0.326)
CCDC92 7 (2%) 386 0.207
(0.34) 		0.0844
(0.196) 		0.774
(0.836) 		0.00409
(0.0343) 		0.0145
(0.0697) 		0.0663
(0.17) 		0.254
(0.384) 		0.389
(0.51) 		0.213
(0.345) 		0.0674
(0.172)
CASKIN1 17 (4%) 376 0.0949
(0.209) 		0.028
(0.103) 		0.319
(0.448) 		0.0133
(0.0664) 		0.198
(0.328) 		0.133
(0.258) 		0.104
(0.221) 		0.0599
(0.16) 		0.132
(0.257) 		0.0789
(0.188)
TSPAN13 4 (1%) 389 0.0624
(0.164) 		0.671
(0.749) 		0.141
(0.268) 		0.585
(0.68) 		0.382
(0.505) 		0.662
(0.741) 		0.019
(0.0813) 		0.817
(0.87) 		0.0389
(0.124) 		0.175
(0.303)
PRAMEF2 10 (3%) 383 0.0943
(0.209) 		0.0448
(0.134) 		0.266
(0.397) 		0.0152
(0.0718) 		0.396
(0.516) 		0.114
(0.234) 		0.074
(0.181) 		0.377
(0.501) 		0.064
(0.167) 		0.196
(0.326)
DTNBP1 6 (2%) 387 0.205
(0.337) 		0.0125
(0.0641) 		0.889
(0.928) 		0.305
(0.436) 		0.138
(0.264) 		0.768
(0.831) 		0.0207
(0.0858) 		0.545
(0.647) 		0.0604
(0.161) 		0.173
(0.301)
BEND5 6 (2%) 387 0.0225
(0.0903) 		0.229
(0.36) 		0.0251
(0.0965) 		0.647
(0.728) 		0.783
(0.843) 		0.0957
(0.21) 		0.309
(0.439) 		0.637
(0.721)
FGF22 4 (1%) 389 0.0614
(0.162) 		0.0691
(0.174) 		0.125
(0.249) 		0.148
(0.275) 		0.0175
(0.0777) 		0.819
(0.872) 		0.463
(0.575) 		0.00661
(0.0449)
EIF2AK3 19 (5%) 374 0.404
(0.523) 		0.707
(0.78) 		0.382
(0.505) 		0.00336
(0.0312) 		0.00014
(0.00477) 		0.0944
(0.209) 		0.165
(0.294) 		0.118
(0.24) 		0.0607
(0.161) 		0.125
(0.249)
HIST1H1B 11 (3%) 382 0.0873
(0.2) 		0.0456
(0.136) 		0.0598
(0.16) 		0.0237
(0.093) 		0.48
(0.591) 		0.254
(0.384) 		0.45
(0.566) 		0.172
(0.3) 		0.174
(0.302) 		0.371
(0.495)
FER 13 (3%) 380 0.0806
(0.191) 		0.334
(0.463) 		0.0448
(0.134) 		0.024
(0.0938) 		0.17
(0.299) 		0.62
(0.709) 		0.18
(0.309) 		0.29
(0.42) 		0.222
(0.353) 		0.585
(0.68)
ATG9A 11 (3%) 382 0.0527
(0.148) 		0.0673
(0.172) 		0.168
(0.297) 		0.0002
(0.00604) 		0.162
(0.29) 		0.04
(0.126) 		0.18
(0.309) 		0.917
(0.951) 		0.898
(0.936) 		0.346
(0.473)
C1ORF131 5 (1%) 388 0.0302
(0.107) 		0.173
(0.301) 		0.378
(0.502) 		0.0479
(0.139) 		0.0564
(0.155) 		0.832
(0.882) 		0.458
(0.571) 		0.223
(0.355)
GPR115 5 (1%) 388 0.0291
(0.105) 		0.184
(0.314) 		0.456
(0.57) 		0.0648
(0.168) 		0.726
(0.795) 		0.0118
(0.0624) 		0.135
(0.26) 		0.247
(0.379) 		0.461
(0.574) 		0.526
(0.629)
SLC44A4 15 (4%) 378 0.00119
(0.0174) 		0.704
(0.777) 		0.419
(0.536) 		0.00764
(0.0488) 		0.424
(0.541) 		0.208
(0.34) 		0.218
(0.35) 		0.457
(0.571) 		0.145
(0.272) 		0.546
(0.647)
AVPR1A 15 (4%) 378 0.00769
(0.0489) 		0.172
(0.3) 		0.336
(0.465) 		0.0311
(0.109) 		0.385
(0.508) 		0.0559
(0.154) 		0.311
(0.442) 		0.21
(0.342) 		0.165
(0.294) 		0.314
(0.444)
ITGAV 18 (5%) 375 0.521
(0.626) 		0.0575
(0.156) 		0.351
(0.477) 		0.586
(0.681) 		0.217
(0.349) 		0.108
(0.228) 		0.0325
(0.111) 		0.149
(0.276) 		0.39
(0.511) 		0.00302
(0.0293)
CRYBB1 10 (3%) 383 0.289
(0.42) 		0.414
(0.532) 		0.563
(0.663) 		0.00159
(0.0203) 		0.141
(0.268) 		0.193
(0.324) 		0.0116
(0.0618) 		0.0892
(0.202) 		0.0988
(0.215) 		0.121
(0.244)
SGK196 7 (2%) 386 0.00378
(0.0333) 		0.358
(0.484) 		0.379
(0.503) 		0.0145
(0.0698) 		0.681
(0.757) 		0.115
(0.236) 		0.853
(0.898) 		0.293
(0.422) 		1
(1.00) 		0.142
(0.268)
PIAS1 9 (2%) 384 0.0934
(0.208) 		0.334
(0.463) 		0.0908
(0.204) 		0.016
(0.0736) 		0.0105
(0.0581) 		0.169
(0.299) 		0.0593
(0.159) 		0.589
(0.682) 		0.282
(0.413) 		0.0569
(0.155)
OLFM3 8 (2%) 385 0.622
(0.71) 		0.00946
(0.0552) 		0.211
(0.344) 		0.0457
(0.136) 		0.0503
(0.144) 		0.641
(0.724) 		0.396
(0.516) 		0.229
(0.36) 		0.599
(0.691) 		0.524
(0.628)
OSTALPHA 4 (1%) 389 0.0618
(0.163) 		0.234
(0.365) 		0.775
(0.836) 		0.058
(0.157) 		0.251
(0.382) 		0.00331
(0.0308) 		0.0318
(0.11) 		0.819
(0.872) 		0.789
(0.848) 		0.526
(0.63)
OXCT2 5 (1%) 388 0.0164
(0.0748) 		0.137
(0.263) 		0.447
(0.563) 		0.015
(0.0712) 		0.29
(0.42) 		0.155
(0.282) 		0.38
(0.504) 		0.249
(0.381) 		0.557
(0.657) 		0.833
(0.882)
PTPN11 8 (2%) 385 0.0219
(0.089) 		0.323
(0.452) 		0.783
(0.843) 		0.0299
(0.107) 		0.198
(0.328) 		0.0927
(0.207) 		0.0647
(0.167) 		0.491
(0.599) 		0.116
(0.237) 		0.198
(0.328)
ASCL4 7 (2%) 386 0.015
(0.0713) 		0.108
(0.228) 		0.338
(0.466) 		0.287
(0.418) 		0.359
(0.485) 		0.233
(0.364) 		0.00015
(0.00497) 		0.388
(0.51) 		0.228
(0.359) 		0.305
(0.435)
ORC2L 7 (2%) 386 0.772
(0.834) 		0.215
(0.347) 		0.317
(0.446) 		0.0159
(0.0735) 		0.22
(0.351) 		0.64
(0.723) 		0.153
(0.279) 		0.0745
(0.182) 		0.212
(0.344) 		0.00668
(0.0452)
LRRC4 21 (5%) 372 0.215
(0.346) 		0.113
(0.233) 		0.345
(0.472) 		0.0411
(0.127) 		0.623
(0.712) 		0.025
(0.0964) 		0.107
(0.226) 		0.254
(0.384) 		0.809
(0.863) 		0.302
(0.433)
CD6 10 (3%) 383 0.106
(0.224) 		0.471
(0.583) 		0.527
(0.63) 		0.00201
(0.0231) 		0.704
(0.777) 		0.0398
(0.126) 		0.318
(0.447) 		0.0769
(0.185) 		0.488
(0.597) 		0.0871
(0.2)
RHOA 19 (5%) 374 0.00669
(0.0452) 		0.588
(0.682) 		1
(1.00) 		0.76
(0.825) 		0.325
(0.455) 		0.158
(0.285) 		0.11
(0.23) 		0.0829
(0.194) 		0.94
(0.97) 		0.208
(0.34)
SMAD4 28 (7%) 365 0.446
(0.561) 		0.562
(0.662) 		0.306
(0.436) 		0.0938
(0.208) 		0.535
(0.638) 		0.749
(0.815) 		0.0438
(0.132) 		0.647
(0.729) 		0.37
(0.495) 		0.369
(0.494)
TRIP4 12 (3%) 381 0.0287
(0.105) 		0.506
(0.613) 		0.561
(0.661) 		0.6
(0.692) 		0.5
(0.606) 		0.179
(0.307) 		0.152
(0.279) 		0.521
(0.626) 		0.599
(0.691) 		0.39
(0.511)
NPHP1 10 (3%) 383 0.00026
(0.00718) 		0.208
(0.34) 		0.403
(0.522) 		0.418
(0.535) 		0.121
(0.244) 		0.109
(0.229) 		0.0517
(0.147) 		0.0891
(0.202) 		0.458
(0.571) 		0.224
(0.355)
IL2RG 10 (3%) 383 0.0134
(0.0667) 		0.185
(0.315) 		0.297
(0.428) 		0.196
(0.327) 		0.468
(0.581) 		0.44
(0.556) 		0.471
(0.583) 		0.372
(0.496) 		0.0765
(0.185) 		0.937
(0.968)
PALB2 11 (3%) 382 0.0526
(0.148) 		0.128
(0.253) 		0.0844
(0.196) 		0.00315
(0.0301) 		0.0727
(0.179) 		0.0871
(0.199) 		0.592
(0.685) 		0.49
(0.598) 		0.388
(0.51) 		0.0641
(0.167)
MAGEE2 11 (3%) 382 0.204
(0.336) 		0.00653
(0.0446) 		0.408
(0.526) 		0.254
(0.384) 		0.11
(0.23) 		0.246
(0.377) 		0.432
(0.549) 		0.315
(0.445) 		0.507
(0.614) 		0.101
(0.218)
GPSM3 12 (3%) 381 0.627
(0.714) 		0.102
(0.218) 		0.12
(0.242) 		0.0156
(0.0729) 		0.431
(0.549) 		0.251
(0.382) 		0.473
(0.585) 		0.119
(0.241) 		0.663
(0.742) 		0.0595
(0.16)
KIRREL 20 (5%) 373 0.616
(0.706) 		0.0846
(0.196) 		0.865
(0.909) 		0.0915
(0.205) 		0.0686
(0.173) 		0.944
(0.974) 		0.126
(0.25) 		0.905
(0.941) 		0.0688
(0.174) 		0.0308
(0.108)
SNRK 16 (4%) 377 0.00202
(0.0232) 		0.489
(0.598) 		0.869
(0.912) 		0.321
(0.45) 		0.0575
(0.156) 		0.475
(0.587) 		0.181
(0.311) 		0.648
(0.73) 		0.208
(0.34) 		0.818
(0.871)
ALG10 14 (4%) 379 0.155
(0.282) 		0.0431
(0.131) 		0.366
(0.491) 		0.054
(0.15) 		0.211
(0.343) 		0.354
(0.48) 		0.179
(0.307) 		0.318
(0.447) 		0.0997
(0.216) 		0.537
(0.64)
SLC22A6 14 (4%) 379 0.0145
(0.0698) 		0.0934
(0.208) 		0.797
(0.853) 		0.0693
(0.174) 		0.261
(0.391) 		0.122
(0.245) 		0.245
(0.377) 		0.755
(0.82) 		0.0661
(0.17) 		0.31
(0.44)
NOX5 17 (4%) 376 0.0485
(0.141) 		0.14
(0.266) 		0.451
(0.566) 		0.126
(0.25) 		0.0742
(0.181) 		0.321
(0.45) 		0.0695
(0.175) 		0.225
(0.357) 		0.207
(0.339) 		0.0634
(0.166)
TOP2A 14 (4%) 379 0.336
(0.465) 		0.485
(0.595) 		0.412
(0.53) 		0.664
(0.743) 		0.466
(0.579) 		0.783
(0.843) 		0.0383
(0.123) 		0.872
(0.914) 		0.0579
(0.157) 		0.123
(0.246)
TATDN1 6 (2%) 387 0.0101
(0.0568) 		0.236
(0.368) 		0.255
(0.385) 		0.761
(0.825) 		0.171
(0.299) 		0.646
(0.728) 		0.715
(0.786) 		0.227
(0.359) 		0.556
(0.657) 		0.8
(0.856)
TGFBR2 16 (4%) 377 0.013
(0.0656) 		0.41
(0.528) 		0.0547
(0.152) 		0.125
(0.249) 		0.375
(0.499) 		0.645
(0.728) 		0.669
(0.747) 		0.305
(0.436) 		0.606
(0.697) 		0.36
(0.485)
SRCIN1 14 (4%) 379 0.209
(0.341) 		0.595
(0.688) 		0.0833
(0.194) 		0.0449
(0.134) 		0.752
(0.818) 		0.217
(0.349) 		0.383
(0.506) 		0.874
(0.915) 		0.216
(0.347) 		0.374
(0.498)
PET112L 8 (2%) 385 0.00461
(0.0367) 		0.416
(0.533) 		0.352
(0.478) 		0.729
(0.797) 		0.0757
(0.184) 		0.686
(0.762) 		0.179
(0.308) 		1
(1.00) 		0.336
(0.465) 		0.257
(0.387)
ARHGAP18 9 (2%) 384 0.478
(0.59) 		0.355
(0.48) 		0.324
(0.454) 		0.102
(0.219) 		0.0846
(0.196) 		0.514
(0.62) 		0.0109
(0.0594) 		0.173
(0.301) 		0.434
(0.55) 		0.113
(0.234)
MICALCL 15 (4%) 378 0.233
(0.364) 		0.844
(0.891) 		0.0351
(0.117) 		0.0815
(0.192) 		0.846
(0.892) 		0.902
(0.939) 		0.789
(0.848) 		0.458
(0.571) 		0.778
(0.839) 		0.892
(0.93)
DAO 14 (4%) 379 0.033
(0.112) 		0.0522
(0.147) 		0.14
(0.266) 		0.109
(0.229) 		0.944
(0.974) 		0.134
(0.259) 		0.599
(0.691) 		0.576
(0.674) 		0.83
(0.881) 		0.217
(0.349)
MDM2 7 (2%) 386 0.111
(0.231) 		0.348
(0.475) 		0.62
(0.709) 		0.0375
(0.122) 		0.197
(0.327) 		0.152
(0.279) 		0.557
(0.658) 		0.876
(0.917) 		1
(1.00) 		0.373
(0.498)
CASC3 11 (3%) 382 0.205
(0.337) 		0.442
(0.558) 		0.105
(0.223) 		0.0891
(0.202) 		0.395
(0.515) 		0.0263
(0.0998) 		0.39
(0.511) 		0.597
(0.689) 		0.655
(0.736) 		0.463
(0.575)
CCDC153 7 (2%) 386 0.0562
(0.155) 		0.501
(0.607) 		0.468
(0.581) 		0.94
(0.97) 		0.132
(0.257) 		0.145
(0.272) 		0.687
(0.763) 		0.766
(0.83) 		0.00037
(0.00872) 		0.146
(0.273)
SF3B3 20 (5%) 373 0.611
(0.702) 		0.0337
(0.114) 		0.241
(0.372) 		0.159
(0.287) 		0.91
(0.945) 		0.517
(0.623) 		0.391
(0.512) 		0.245
(0.377) 		0.319
(0.448) 		0.123
(0.247)
ZNF124 10 (3%) 383 0.118
(0.239) 		0.497
(0.604) 		0.258
(0.388) 		0.137
(0.262) 		0.00114
(0.017) 		0.108
(0.227) 		0.0987
(0.215) 		0.0892
(0.202) 		0.878
(0.918) 		0.532
(0.635)
TAF1L 31 (8%) 362 0.0643
(0.167) 		0.398
(0.517) 		0.131
(0.256) 		0.0949
(0.209) 		0.104
(0.221) 		0.664
(0.742) 		0.636
(0.72) 		0.0121
(0.0632) 		0.67
(0.748) 		0.2
(0.331)
NFE2L1 11 (3%) 382 0.0908
(0.204) 		0.0982
(0.214) 		0.717
(0.788) 		0.904
(0.94) 		0.0919
(0.206) 		0.045
(0.134) 		0.204
(0.336) 		0.488
(0.597) 		0.245
(0.377) 		0.269
(0.4)
DYRK4 8 (2%) 385 0.0733
(0.18) 		0.0915
(0.205) 		0.881
(0.92) 		0.157
(0.284) 		0.324
(0.454) 		0.0652
(0.168) 		0.547
(0.648) 		0.629
(0.716) 		0.0279
(0.103) 		0.168
(0.298)
BTNL3 6 (2%) 387 0.111
(0.231) 		0.583
(0.679) 		0.0172
(0.0767) 		0.144
(0.27) 		0.966
(0.993) 		0.653
(0.734) 		0.382
(0.505) 		1
(1.00) 		0.174
(0.301) 		0.287
(0.418)
IPO5 21 (5%) 372 0.0891
(0.202) 		0.0101
(0.0568) 		0.62
(0.709) 		0.424
(0.541) 		0.274
(0.405) 		0.275
(0.406) 		0.845
(0.892) 		0.653
(0.733) 		0.936
(0.967) 		0.501
(0.607)
KLHDC8B 10 (3%) 383 0.135
(0.261) 		0.0139
(0.0681) 		0.233
(0.365) 		0.63
(0.716) 		0.482
(0.593) 		0.299
(0.43) 		0.727
(0.796) 		1
(1.00) 		0.737
(0.804) 		0.703
(0.777)
TMC4 15 (4%) 378 0.0792
(0.189) 		0.943
(0.973) 		0.771
(0.833) 		0.00152
(0.0198) 		0.305
(0.436) 		0.73
(0.799) 		0.656
(0.736) 		0.722
(0.791) 		0.674
(0.751) 		0.992
(1.00)
DDX26B 12 (3%) 381 0.271
(0.402) 		0.138
(0.264) 		0.034
(0.114) 		0.121
(0.244) 		0.99
(1.00) 		0.715
(0.786) 		0.51
(0.616) 		0.522
(0.627) 		0.222
(0.354) 		0.0649
(0.168)
SENP3 13 (3%) 380 0.00177
(0.0216) 		0.139
(0.265) 		0.187
(0.317) 		0.485
(0.595) 		0.3
(0.43) 		0.354
(0.48) 		0.448
(0.563) 		0.0893
(0.202) 		0.846
(0.893) 		0.147
(0.274)
PPP1R13B 14 (4%) 379 0.0354
(0.117) 		0.545
(0.646) 		0.156
(0.283) 		0.157
(0.284) 		0.254
(0.384) 		0.508
(0.615) 		0.0844
(0.196) 		0.317
(0.447) 		0.0688
(0.174) 		0.112
(0.232)
TUBE1 9 (2%) 384 0.0928
(0.207) 		0.319
(0.448) 		0.0653
(0.168) 		0.0444
(0.133) 		0.159
(0.286) 		0.258
(0.388) 		0.825
(0.876) 		0.169
(0.299) 		0.705
(0.778) 		0.243
(0.375)
IDH2 4 (1%) 389 0.0821
(0.192) 		0.67
(0.747) 		0.663
(0.742) 		0.246
(0.378) 		0.336
(0.465) 		0.912
(0.947) 		0.209
(0.341) 		0.647
(0.728) 		0.251
(0.382) 		0.0333
(0.113)
BAT3 13 (3%) 380 0.0787
(0.188) 		0.0722
(0.178) 		0.112
(0.232) 		0.023
(0.0911) 		0.315
(0.445) 		0.404
(0.523) 		0.864
(0.908) 		0.64
(0.724) 		0.629
(0.716) 		0.692
(0.767)
OXNAD1 6 (2%) 387 0.203
(0.335) 		0.0719
(0.178) 		0.458
(0.571) 		0.243
(0.375) 		0.173
(0.301) 		0.152
(0.279) 		0.106
(0.224) 		0.399
(0.518) 		0.849
(0.895) 		0.0033
(0.0308)
CETN3 9 (2%) 384 0.00101
(0.0158) 		0.285
(0.416) 		0.739
(0.805) 		0.0521
(0.147) 		0.0556
(0.154) 		0.258
(0.388) 		0.188
(0.319) 		0.585
(0.68) 		0.432
(0.549) 		0.334
(0.463)
RRS1 7 (2%) 386 0.149
(0.276) 		0.615
(0.705) 		0.0939
(0.208) 		0.76
(0.825) 		0.797
(0.853) 		0.02
(0.0841) 		0.928
(0.96) 		0.388
(0.51) 		0.849
(0.894) 		0.409
(0.527)
LINGO4 11 (3%) 382 0.12
(0.242) 		0.107
(0.226) 		0.971
(0.998) 		0.141
(0.267) 		0.25
(0.382) 		0.0219
(0.089) 		0.401
(0.52) 		0.312
(0.442) 		0.489
(0.598) 		0.482
(0.593)
OR2J3 9 (2%) 384 0.24
(0.371) 		0.0296
(0.106) 		0.572
(0.67) 		0.103
(0.221) 		0.843
(0.89) 		0.0685
(0.173) 		0.0888
(0.202) 		0.903
(0.94) 		0.434
(0.551) 		0.281
(0.413)
GCDH 7 (2%) 386 0.148
(0.275) 		0.189
(0.32) 		0.811
(0.865) 		0.0511
(0.145) 		0.00018
(0.00559) 		0.19
(0.321) 		0.442
(0.558) 		0.291
(0.421) 		0.0858
(0.198) 		0.112
(0.232)
SERPINA1 7 (2%) 386 0.15
(0.277) 		0.301
(0.431) 		0.887
(0.926) 		0.049
(0.142) 		0.133
(0.259) 		0.151
(0.278) 		0.304
(0.434) 		0.766
(0.829) 		0.619
(0.708) 		0.524
(0.628)
CCDC138 10 (3%) 383 0.136
(0.261) 		0.965
(0.993) 		0.0939
(0.208) 		0.00802
(0.0498) 		0.154
(0.281) 		0.253
(0.384) 		0.355
(0.481) 		0.279
(0.411) 		0.126
(0.25) 		0.0815
(0.192)
CRYGA 11 (3%) 382 0.0521
(0.147) 		0.0653
(0.168) 		0.192
(0.323) 		0.0137
(0.0673) 		0.134
(0.26) 		0.53
(0.634) 		0.279
(0.411) 		0.487
(0.597) 		0.634
(0.719) 		0.352
(0.478)
HSPA14 6 (2%) 387 0.455
(0.569) 		0.652
(0.733) 		0.141
(0.267) 		0.0309
(0.108) 		0.965
(0.993) 		0.778
(0.838) 		0.0898
(0.203) 		0.638
(0.721) 		0.214
(0.346) 		0.0588
(0.158)
CYP7B1 20 (5%) 373 0.243
(0.374) 		0.632
(0.718) 		0.344
(0.471) 		0.176
(0.304) 		0.78
(0.84) 		0.269
(0.4) 		0.176
(0.304) 		0.0384
(0.123) 		1
(1.00) 		0.455
(0.569)
NEUROD6 6 (2%) 387 0.13
(0.255) 		0.902
(0.939) 		0.199
(0.329) 		0.0495
(0.142) 		0.309
(0.439) 		0.331
(0.461) 		0.0609
(0.162) 		0.86
(0.904) 		1
(1.00) 		0.407
(0.525)
MAP2K1 7 (2%) 386 1
(1.00) 		0.438
(0.555) 		0.415
(0.533) 		0.481
(0.591) 		0.0423
(0.13) 		0.342
(0.469) 		0.135
(0.261) 		0.293
(0.423) 		0.126
(0.25) 		0.103
(0.221)
H2AFY 7 (2%) 386 0.148
(0.275) 		0.0789
(0.188) 		0.416
(0.533) 		3e-05
(0.00196) 		0.201
(0.332) 		0.135
(0.261) 		0.11
(0.229) 		0.214
(0.346) 		0.661
(0.74) 		0.339
(0.467)
ZFP36L1 5 (1%) 388 0.0287
(0.105) 		0.273
(0.404) 		0.396
(0.516) 		0.346
(0.473) 		0.624
(0.713) 		0.0967
(0.211) 		0.961
(0.989) 		0.486
(0.596) 		1
(1.00) 		0.563
(0.662)
RNASEL 6 (2%) 387 0.0229
(0.091) 		0.137
(0.262) 		0.454
(0.569) 		0.0647
(0.167) 		0.29
(0.42) 		0.543
(0.645) 		0.162
(0.29) 		0.546
(0.647) 		0.735
(0.803) 		0.314
(0.444)
OSGEPL1 4 (1%) 389 0.459
(0.572) 		0.263
(0.392) 		0.192
(0.323) 		0.0459
(0.136) 		0.558
(0.658) 		0.788
(0.846) 		1
(1.00) 		1
(1.00) 		0.0587
(0.158) 		0.521
(0.626)
TPTE2 17 (4%) 376 1
(1.00) 		0.127
(0.252) 		0.214
(0.346) 		0.213
(0.345) 		0.136
(0.261) 		0.00469
(0.0371) 		0.25
(0.382) 		0.105
(0.223) 		0.34
(0.468) 		0.221
(0.353)
SERPINB12 6 (2%) 387 0.517
(0.623) 		0.453
(0.568) 		0.774
(0.836) 		0.135
(0.261) 		0.623
(0.712) 		0.0657
(0.169) 		0.258
(0.388) 		0.546
(0.647) 		1
(1.00) 		0.0372
(0.121)
INTS12 6 (2%) 387 0.11
(0.229) 		0.451
(0.566) 		0.911
(0.946) 		0.00156
(0.02) 		0.29
(0.42) 		0.211
(0.343) 		0.386
(0.509) 		0.544
(0.646) 		0.558
(0.658) 		0.115
(0.236)
CTSA 5 (1%) 388 0.083
(0.194) 		0.735
(0.803) 		0.767
(0.83) 		0.905
(0.941) 		0.0741
(0.181) 		1
(1.00) 		0.0402
(0.126) 		0.307
(0.437) 		0.249
(0.381) 		0.566
(0.665)
C1QA 5 (1%) 388 0.0286
(0.104) 		0.272
(0.403) 		0.0729
(0.179) 		0.103
(0.221) 		0.0734
(0.18) 		0.0863
(0.199) 		0.237
(0.368) 		0.31
(0.44) 		0.212
(0.344) 		0.565
(0.664)
NPHS1 16 (4%) 377 0.46
(0.573) 		0.0529
(0.149) 		0.308
(0.438) 		0.869
(0.912) 		0.0494
(0.142) 		0.361
(0.486) 		0.0681
(0.173) 		0.179
(0.308) 		0.72
(0.789) 		0.588
(0.682)
HSP90B1 9 (2%) 384 0.0033
(0.0308) 		0.228
(0.359) 		0.101
(0.218) 		0.441
(0.557) 		0.0618
(0.163) 		0.441
(0.557) 		0.497
(0.604) 		0.584
(0.68) 		0.215
(0.346) 		0.405
(0.523)
C14ORF50 8 (2%) 385 0.0228
(0.0908) 		0.298
(0.428) 		0.08
(0.19) 		0.69
(0.766) 		0.522
(0.626) 		0.367
(0.492) 		0.0556
(0.154) 		1
(1.00) 		0.117
(0.238) 		0.782
(0.842)
CBLN3 7 (2%) 386 0.0573
(0.156) 		0.0661
(0.17) 		0.112
(0.232) 		0.0792
(0.189) 		0.346
(0.473) 		0.0166
(0.075) 		0.107
(0.226) 		0.389
(0.51) 		0.145
(0.272) 		0.0688
(0.174)
SPOCD1 13 (3%) 380 0.00166
(0.0208) 		0.219
(0.35) 		0.0989
(0.215) 		0.104
(0.221) 		0.286
(0.417) 		0.284
(0.415) 		0.19
(0.321) 		0.29
(0.42) 		1
(1.00) 		0.337
(0.466)
SMAD7 7 (2%) 386 0.148
(0.275) 		0.505
(0.612) 		0.782
(0.842) 		0.0376
(0.122) 		0.833
(0.882) 		0.407
(0.526) 		0.866
(0.91) 		0.388
(0.51) 		0.848
(0.894) 		0.0624
(0.164)
SPATA20 17 (4%) 376 0.0488
(0.141) 		0.24
(0.371) 		0.236
(0.367) 		0.0637
(0.166) 		0.271
(0.402) 		0.259
(0.389) 		0.588
(0.682) 		0.796
(0.853) 		0.341
(0.468) 		0.727
(0.796)
KIN 7 (2%) 386 0.0039
(0.0336) 		0.0535
(0.15) 		0.496
(0.604) 		0.419
(0.536) 		0.205
(0.337) 		0.0554
(0.153) 		0.062
(0.163) 		0.388
(0.51) 		0.161
(0.289) 		0.257
(0.387)
KRT222 8 (2%) 385 0.0229
(0.0909) 		0.0839
(0.195) 		0.967
(0.994) 		0.0505
(0.144) 		0.471
(0.583) 		0.714
(0.785) 		0.215
(0.347) 		0.712
(0.783) 		0.162
(0.29) 		0.123
(0.246)
FNDC4 6 (2%) 387 0.196
(0.326) 		0.233
(0.364) 		0.389
(0.51) 		0.174
(0.302) 		0.317
(0.446) 		0.0123
(0.0638) 		0.105
(0.223) 		0.142
(0.268) 		0.581
(0.677) 		0.28
(0.411)
LIPH 7 (2%) 386 0.371
(0.496) 		0.025
(0.0965) 		0.341
(0.469) 		0.719
(0.789) 		0.439
(0.555) 		0.713
(0.785) 		0.286
(0.417) 		0.388
(0.51) 		0.435
(0.551) 		0.112
(0.232)
GPR160 8 (2%) 385 0.0715
(0.177) 		0.184
(0.314) 		0.201
(0.332) 		0.0003
(0.00776) 		0.676
(0.753) 		0.677
(0.754) 		0.155
(0.282) 		0.626
(0.713) 		0.215
(0.346) 		1
(1.00)
ICAM3 4 (1%) 389 0.368
(0.493) 		0.0478
(0.139) 		0.763
(0.827) 		1
(1.00) 		0.408
(0.526) 		0.215
(0.347) 		0.516
(0.622)
PDCD1 5 (1%) 388 0.0624
(0.164) 		0.0691
(0.174) 		0.911
(0.946) 		0.0422
(0.13) 		0.0603
(0.161) 		0.153
(0.279) 		0.194
(0.325) 		0.487
(0.597) 		1
(1.00) 		0.226
(0.357)
MARCH7 6 (2%) 387 0.00992
(0.0564) 		0.109
(0.229) 		0.172
(0.3) 		0.587
(0.681) 		0.779
(0.84) 		0.149
(0.276) 		0.395
(0.516) 		1
(1.00) 		0.229
(0.36) 		0.152
(0.279)
PPIAL4A 3 (1%) 390 0.00196
(0.0229) 		0.248
(0.38) 		0.258
(0.388) 		0.0806
(0.191) 		0.183
(0.313) 		0.767
(0.83) 		0.461
(0.573) 		0.524
(0.628)
NUFIP2 8 (2%) 385 0.0457
(0.136) 		0.275
(0.406) 		0.0571
(0.156) 		0.3
(0.431) 		0.446
(0.561) 		0.537
(0.64) 		0.837
(0.885) 		0.625
(0.713) 		0.66
(0.74) 		0.38
(0.504)
ADCY10 20 (5%) 373 0.128
(0.253) 		0.224
(0.355) 		0.54
(0.643) 		0.00078
(0.0134) 		0.795
(0.852) 		0.305
(0.436) 		0.526
(0.629) 		0.669
(0.747) 		0.527
(0.631) 		0.744
(0.811)
QRFPR 12 (3%) 381 0.292
(0.422) 		0.182
(0.312) 		0.101
(0.218) 		0.63
(0.716) 		0.472
(0.584) 		0.379
(0.503) 		0.00674
(0.0453) 		0.119
(0.241) 		0.0637
(0.166) 		0.0982
(0.214)
C19ORF26 10 (3%) 383 0.166
(0.295) 		0.369
(0.494) 		0.57
(0.668) 		0.477
(0.589) 		0.0358
(0.118) 		0.639
(0.722) 		0.297
(0.427) 		0.831
(0.881) 		0.226
(0.357) 		0.461
(0.574)
C6 11 (3%) 382 0.218
(0.349) 		0.83
(0.881) 		0.106
(0.225) 		0.00806
(0.0499) 		0.0631
(0.165) 		0.107
(0.225) 		0.208
(0.341) 		0.171
(0.299) 		0.903
(0.939) 		0.516
(0.622)
NOBOX 10 (3%) 383 0.00137
(0.0187) 		0.0778
(0.186) 		0.523
(0.628) 		0.205
(0.337) 		0.108
(0.227) 		0.474
(0.585) 		0.125
(0.249) 		0.371
(0.496) 		0.58
(0.677) 		0.194
(0.325)
CTSO 6 (2%) 387 0.354
(0.48) 		0.406
(0.525) 		0.824
(0.875) 		0.0118
(0.0623) 		0.429
(0.546) 		0.268
(0.398) 		0.809
(0.863) 		0.634
(0.719) 		0.849
(0.895) 		0.432
(0.549)
MGST2 3 (1%) 390 0.105
(0.222) 		0.0885
(0.201) 		0.0849
(0.197) 		0.018
(0.079) 		0.223
(0.355) 		0.587
(0.681)
PPP3CA 12 (3%) 381 0.0479
(0.139) 		0.274
(0.406) 		0.351
(0.477) 		0.634
(0.719) 		0.0737
(0.181) 		0.147
(0.274) 		0.185
(0.315) 		0.524
(0.628) 		0.381
(0.505) 		0.101
(0.218)
NOB1 7 (2%) 386 0.148
(0.275) 		0.174
(0.302) 		0.19
(0.321) 		0.831
(0.882) 		0.44
(0.556) 		0.179
(0.308) 		0.0407
(0.127) 		0.386
(0.509) 		0.289
(0.419) 		0.234
(0.365)
TCF20 17 (4%) 376 0.00023
(0.00666) 		0.399
(0.518) 		0.702
(0.776) 		0.0597
(0.16) 		0.378
(0.502) 		0.806
(0.861) 		0.0979
(0.213) 		0.418
(0.535) 		0.365
(0.49) 		0.104
(0.222)
EHBP1 14 (4%) 379 0.27
(0.4) 		0.373
(0.498) 		0.891
(0.929) 		0.179
(0.308) 		0.0123
(0.0638) 		0.329
(0.459) 		0.104
(0.221) 		0.299
(0.43) 		1
(1.00) 		0.355
(0.481)
ELL2 15 (4%) 378 0.00495
(0.0383) 		0.171
(0.299) 		0.558
(0.658) 		0.367
(0.492) 		0.0594
(0.159) 		0.69
(0.766) 		0.145
(0.272) 		0.224
(0.356) 		0.227
(0.358) 		0.0603
(0.161)
DDX43 13 (3%) 380 0.122
(0.244) 		0.392
(0.513) 		0.204
(0.336) 		0.0391
(0.124) 		0.237
(0.368) 		0.569
(0.668) 		0.154
(0.28) 		0.4
(0.518) 		0.492
(0.6) 		0.533
(0.636)
UPK2 4 (1%) 389 0.082
(0.192) 		0.331
(0.461) 		0.697
(0.772) 		0.269
(0.4) 		0.747
(0.813) 		0.018
(0.079) 		0.0959
(0.211) 		0.395
(0.515)
SMCHD1 14 (4%) 379 0.663
(0.742) 		0.173
(0.301) 		0.214
(0.346) 		0.11
(0.229) 		0.0775
(0.186) 		0.125
(0.249) 		0.0254
(0.0976) 		0.0515
(0.146) 		0.0898
(0.203) 		0.282
(0.413)
CD33 9 (2%) 384 0.735
(0.803) 		0.146
(0.273) 		0.0346
(0.116) 		0.0995
(0.216) 		0.918
(0.952) 		0.967
(0.994) 		0.823
(0.875) 		0.793
(0.85) 		1
(1.00) 		0.886
(0.925)
PRAMEF14 5 (1%) 388 0.197
(0.327) 		0.0647
(0.167) 		0.337
(0.465) 		0.0564
(0.155) 		0.456
(0.57) 		0.373
(0.498) 		0.658
(0.738) 		0.312
(0.442) 		0.0378
(0.122) 		0.473
(0.585)
AVEN 7 (2%) 386 0.371
(0.495) 		0.0813
(0.191) 		0.218
(0.349) 		0.362
(0.487) 		0.00179
(0.0217) 		0.193
(0.323) 		0.0552
(0.153) 		0.386
(0.509) 		0.184
(0.315) 		0.526
(0.63)
CCAR1 19 (5%) 374 0.0919
(0.206) 		0.346
(0.473) 		0.153
(0.28) 		0.102
(0.219) 		0.0476
(0.139) 		0.163
(0.292) 		0.3
(0.43) 		0.363
(0.488) 		0.598
(0.69) 		0.15
(0.277)
TMEM127 5 (1%) 388 0.0704
(0.176) 		0.443
(0.559) 		0.134
(0.259) 		0.0185
(0.08) 		0.726
(0.795) 		0.544
(0.646) 		0.225
(0.357) 		0.832
(0.882) 		0.227
(0.358) 		0.209
(0.342)
C2ORF76 4 (1%) 389 0.027
(0.101) 		0.183
(0.313) 		1
(1.00) 		0.245
(0.377) 		0.81
(0.864) 		0.408
(0.526) 		0.373
(0.497) 		1
(1.00) 		0.617
(0.707) 		0.808
(0.863)
TNFSF13 3 (1%) 390 0.106
(0.224) 		0.683
(0.759) 		0.317
(0.447) 		0.891
(0.929) 		0.122
(0.244) 		0.765
(0.829) 		0.253
(0.383) 		0.033
(0.112)
CASKIN2 15 (4%) 378 0.35
(0.476) 		0.581
(0.678) 		0.785
(0.844) 		0.199
(0.33) 		0.0905
(0.204) 		0.0516
(0.146) 		0.362
(0.487) 		0.0965
(0.211) 		0.0418
(0.129) 		0.125
(0.249)
PABPC4 9 (2%) 384 0.0114
(0.0607) 		0.135
(0.26) 		0.0611
(0.162) 		0.478
(0.59) 		0.128
(0.252) 		0.865
(0.908) 		0.0829
(0.194) 		0.17
(0.299) 		0.115
(0.236) 		0.123
(0.246)
UGT1A4 10 (3%) 383 0.292
(0.421) 		0.0865
(0.199) 		0.58
(0.676) 		0.0223
(0.0899) 		0.195
(0.326) 		0.808
(0.863) 		0.237
(0.368) 		0.337
(0.465) 		0.135
(0.261) 		0.272
(0.403)
SERPINB7 6 (2%) 387 0.0429
(0.131) 		0.403
(0.521) 		0.528
(0.632) 		0.401
(0.519) 		0.691
(0.766) 		0.543
(0.645) 		0.723
(0.793) 		1
(1.00) 		0.737
(0.804) 		0.31
(0.441)
CNOT6 8 (2%) 385 0.00654
(0.0446) 		0.0846
(0.196) 		0.28
(0.411) 		0.0626
(0.164) 		0.224
(0.355) 		0.711
(0.783) 		0.161
(0.289) 		0.224
(0.355) 		0.254
(0.384) 		0.322
(0.451)
LCE1A 4 (1%) 389 0.279
(0.411) 		0.566
(0.665) 		0.216
(0.347) 		0.586
(0.681) 		1
(1.00) 		0.514
(0.62) 		0.355
(0.481) 		0.005
(0.0386) 		0.684
(0.761) 		0.276
(0.407)
C9ORF46 4 (1%) 389 0.367
(0.492) 		0.332
(0.461) 		0.19
(0.321) 		0.271
(0.402) 		0.289
(0.419) 		0.146
(0.273) 		0.0479
(0.139) 		0.392
(0.513) 		0.462
(0.575) 		0.569
(0.667)
HGF 18 (5%) 375 0.737
(0.804) 		0.279
(0.411) 		0.0383
(0.123) 		0.0824
(0.193) 		0.623
(0.712) 		0.926
(0.958) 		0.259
(0.389) 		0.948
(0.977) 		0.309
(0.439) 		0.315
(0.445)
ZCCHC2 6 (2%) 387 0.11
(0.23) 		0.507
(0.614) 		0.114
(0.235) 		0.00195
(0.0228) 		0.455
(0.569) 		0.774
(0.836) 		0.371
(0.496) 		0.545
(0.646) 		0.291
(0.421) 		0.735
(0.803)
EEF2K 10 (3%) 383 0.165
(0.293) 		0.508
(0.615) 		0.499
(0.606) 		0.17
(0.299) 		0.984
(1.00) 		0.703
(0.776) 		0.0262
(0.0996) 		0.375
(0.499) 		0.58
(0.677) 		0.797
(0.853)
C20ORF7 6 (2%) 387 0.0269
(0.101) 		0.568
(0.667) 		0.957
(0.986) 		0.48
(0.591) 		0.626
(0.713) 		0.0505
(0.144) 		0.359
(0.485) 		0.225
(0.356) 		0.369
(0.494) 		0.702
(0.776)
PHF10 4 (1%) 389 0.0622
(0.164) 		0.683
(0.76) 		0.487
(0.597) 		0.00414
(0.0345) 		0.331
(0.461) 		0.775
(0.836) 		0.752
(0.818) 		0.394
(0.515)
CYP4B1 10 (3%) 383 0.292
(0.422) 		0.17
(0.299) 		0.981
(1.00) 		0.0089
(0.0533) 		0.873
(0.915) 		0.242
(0.374) 		0.0838
(0.195) 		0.334
(0.463) 		0.578
(0.675) 		0.321
(0.451)
THYN1 8 (2%) 385 0.621
(0.71) 		0.0257
(0.0984) 		0.112
(0.232) 		0.374
(0.498) 		0.318
(0.447) 		0.361
(0.486) 		0.538
(0.641) 		0.49
(0.598) 		0.735
(0.803) 		0.802
(0.857)
FAM26E 3 (1%) 390 0.149
(0.276) 		0.184
(0.314) 		0.259
(0.389) 		0.0407
(0.127) 		0.155
(0.282) 		0.0881
(0.201) 		0.359
(0.485) 		0.768
(0.831) 		0.254
(0.384) 		0.567
(0.666)
GCG 7 (2%) 386 0.0124
(0.0638) 		0.263
(0.392) 		0.311
(0.442) 		0.0803
(0.19) 		0.0574
(0.156) 		0.688
(0.764) 		0.211
(0.343) 		0.215
(0.347) 		0.118
(0.24) 		0.34
(0.468)
EXOC3L2 3 (1%) 390 0.103
(0.221) 		0.415
(0.533) 		0.186
(0.316) 		0.00337
(0.0313) 		0.586
(0.681)
SLC26A8 10 (3%) 383 0.347
(0.474) 		0.0786
(0.188) 		0.79
(0.848) 		0.0279
(0.103) 		0.192
(0.323) 		0.928
(0.96) 		0.464
(0.576) 		0.415
(0.533) 		0.0646
(0.167) 		0.375
(0.5)
MBOAT2 3 (1%) 390 0.104
(0.221) 		0.773
(0.835) 		0.136
(0.261) 		0.0165
(0.075) 		0.306
(0.436) 		0.0809
(0.191) 		0.586
(0.681)
TAF1D 7 (2%) 386 0.565
(0.664) 		0.84
(0.887) 		0.131
(0.256) 		0.36
(0.486) 		0.164
(0.293) 		0.341
(0.469) 		0.137
(0.262) 		1
(1.00) 		0.0007
(0.0127) 		0.386
(0.508)
ANKMY2 4 (1%) 389 0.46
(0.573) 		0.153
(0.28) 		0.461
(0.573) 		0.245
(0.377) 		0.907
(0.943) 		0.478
(0.59) 		0.0326
(0.111) 		0.643
(0.726) 		0.456
(0.57) 		0.836
(0.884)
TPD52L1 10 (3%) 383 0.12
(0.242) 		0.586
(0.681) 		0.522
(0.627) 		0.0416
(0.128) 		0.583
(0.679) 		0.31
(0.44) 		0.142
(0.268) 		0.83
(0.881) 		0.49
(0.598) 		0.957
(0.986)
DLL1 15 (4%) 378 0.0317
(0.11) 		0.333
(0.462) 		0.0823
(0.193) 		0.13
(0.255) 		0.836
(0.884) 		0.548
(0.649) 		0.303
(0.433) 		0.939
(0.97) 		0.203
(0.335) 		0.648
(0.73)
MYOCD 17 (4%) 376 0.00558
(0.0411) 		0.0808
(0.191) 		0.661
(0.74) 		0.272
(0.403) 		0.112
(0.232) 		0.543
(0.645) 		0.204
(0.336) 		0.557
(0.657) 		0.131
(0.256) 		0.173
(0.301)
ESRP2 8 (2%) 385 0.0223
(0.0899) 		0.0773
(0.186) 		0.332
(0.462) 		0.0537
(0.15) 		0.113
(0.234) 		0.191
(0.322) 		0.305
(0.435) 		0.173
(0.301) 		0.336
(0.465) 		0.633
(0.718)
C8ORF38 8 (2%) 385 0.0706
(0.176) 		0.289
(0.42) 		0.609
(0.7) 		0.358
(0.484) 		0.925
(0.957) 		0.539
(0.642) 		0.0272
(0.101) 		0.489
(0.598) 		0.849
(0.894) 		0.192
(0.323)
NEIL1 7 (2%) 386 0.0569
(0.155) 		0.313
(0.443) 		0.047
(0.138) 		0.471
(0.583) 		0.981
(1.00) 		0.187
(0.317) 		0.357
(0.482) 		0.511
(0.617) 		0.556
(0.656) 		0.29
(0.42)
TRPM6 22 (6%) 371 0.581
(0.677) 		0.112
(0.232) 		0.823
(0.875) 		0.00919
(0.0544) 		0.47
(0.582) 		0.32
(0.449) 		0.652
(0.733) 		0.192
(0.323) 		0.095
(0.209) 		0.0776
(0.186)
IL1F7 3 (1%) 390 0.106
(0.224) 		0.0514
(0.146) 		0.19
(0.321) 		0.0296
(0.106) 		1
(1.00)
BRPF3 11 (3%) 382 0.0516
(0.147) 		0.0155
(0.0726) 		0.338
(0.467) 		0.178
(0.306) 		0.828
(0.88) 		0.137
(0.262) 		0.176
(0.303) 		0.0956
(0.21) 		0.157
(0.284) 		0.393
(0.514)
PIGZ 9 (2%) 384 0.149
(0.276) 		0.0841
(0.196) 		1
(1.00) 		0.00619
(0.0433) 		0.323
(0.452) 		0.0805
(0.19) 		0.395
(0.515) 		0.654
(0.735) 		0.23
(0.361) 		0.234
(0.365)
C11ORF88 7 (2%) 386 0.0571
(0.156) 		0.926
(0.958) 		0.436
(0.553) 		0.0364
(0.119) 		0.455
(0.569) 		0.341
(0.468) 		0.0549
(0.152) 		0.389
(0.51) 		0.142
(0.268) 		0.147
(0.274)
HCRTR1 6 (2%) 387 0.111
(0.232) 		0.331
(0.461) 		0.77
(0.832) 		0.0318
(0.11) 		0.14
(0.266) 		0.647
(0.729) 		0.285
(0.416) 		0.86
(0.905) 		0.172
(0.3) 		0.871
(0.914)
ELOVL2 7 (2%) 386 0.195
(0.326) 		0.25
(0.382) 		0.289
(0.419) 		0.0153
(0.0721) 		0.906
(0.942) 		1
(1.00) 		0.164
(0.293) 		0.513
(0.619) 		0.0882
(0.201) 		0.469
(0.582)
PPARG 4 (1%) 389 0.0818
(0.192) 		0.232
(0.363) 		0.673
(0.751) 		0.287
(0.418) 		0.112
(0.233) 		0.0277
(0.103) 		0.394
(0.515)
RAB14 6 (2%) 387 0.353
(0.479) 		0.454
(0.568) 		0.334
(0.463) 		0.00053
(0.0109) 		0.847
(0.893) 		0.154
(0.281) 		0.489
(0.598) 		1
(1.00) 		0.458
(0.572) 		0.186
(0.316)
NAA25 15 (4%) 378 0.347
(0.473) 		0.0388
(0.124) 		0.275
(0.407) 		0.225
(0.357) 		0.617
(0.707) 		0.579
(0.676) 		0.955
(0.985) 		0.82
(0.873) 		0.539
(0.642) 		0.784
(0.843)
CEL 15 (4%) 378 0.00795
(0.0496) 		0.583
(0.679) 		0.196
(0.326) 		0.118
(0.24) 		0.507
(0.614) 		0.0562
(0.155) 		0.714
(0.786) 		0.455
(0.569) 		0.254
(0.384) 		0.448
(0.563)
ABTB1 10 (3%) 383 0.165
(0.294) 		0.0557
(0.154) 		0.593
(0.686) 		0.00247
(0.026) 		0.359
(0.485) 		0.188
(0.319) 		0.472
(0.584) 		0.618
(0.708) 		0.491
(0.599) 		0.131
(0.256)
QTRTD1 6 (2%) 387 0.735
(0.803) 		0.643
(0.726) 		0.626
(0.713) 		0.174
(0.302) 		0.241
(0.372) 		0.705
(0.778) 		0.0223
(0.0899) 		0.279
(0.411) 		0.251
(0.382) 		0.286
(0.417)
TMEM206 7 (2%) 386 0.195
(0.326) 		0.173
(0.301) 		0.449
(0.565) 		0.343
(0.471) 		0.0754
(0.183) 		0.0943
(0.209) 		0.00107
(0.0163) 		0.387
(0.509) 		0.229
(0.36) 		0.233
(0.364)
MAP4K5 4 (1%) 389 0.062
(0.164) 		0.332
(0.462) 		0.699
(0.773) 		0.0121
(0.0633) 		0.0848
(0.197) 		1
(1.00) 		0.0578
(0.157) 		0.396
(0.516)
SUCNR1 4 (1%) 389 0.0611
(0.162) 		0.331
(0.461) 		0.393
(0.514) 		0.346
(0.473) 		0.487
(0.597) 		0.0217
(0.0884) 		0.336
(0.465) 		0.395
(0.516) 		0.791
(0.849) 		0.169
(0.299)
SMARCC2 18 (5%) 375 0.103
(0.22) 		0.606
(0.697) 		0.00401
(0.034) 		0.615
(0.705) 		0.0996
(0.216) 		0.864
(0.908) 		0.308
(0.438) 		0.408
(0.526) 		0.547
(0.648) 		0.541
(0.644)
WBP11 5 (1%) 388 0.0714
(0.177) 		1
(1.00) 		0.283
(0.414) 		0.192
(0.323) 		0.0799
(0.19) 		0.147
(0.274) 		0.764
(0.828) 		0.833
(0.882) 		0.228
(0.359) 		0.00837
(0.0511)
SET 7 (2%) 386 0.195
(0.326) 		0.0874
(0.2) 		0.34
(0.468) 		0.647
(0.729) 		0.308
(0.438) 		0.0304
(0.107) 		0.776
(0.837) 		1
(1.00) 		1
(1.00) 		0.474
(0.586)
CASC5 21 (5%) 372 0.385
(0.508) 		0.0768
(0.185) 		0.789
(0.848) 		0.0172
(0.0768) 		0.705
(0.778) 		0.261
(0.391) 		0.0645
(0.167) 		0.167
(0.297) 		0.598
(0.69) 		0.555
(0.656)
GALK1 4 (1%) 389 0.148
(0.275) 		0.23
(0.36) 		0.0585
(0.158) 		0.382
(0.505) 		0.0226
(0.0905) 		0.265
(0.396) 		0.396
(0.516)
FBXL22 5 (1%) 388 0.0706
(0.176) 		0.143
(0.268) 		0.397
(0.517) 		0.0471
(0.138) 		0.719
(0.789) 		0.221
(0.353) 		0.412
(0.53) 		0.485
(0.595) 		1
(1.00) 		0.151
(0.278)
PARP15 5 (1%) 388 0.197
(0.328) 		0.196
(0.327) 		0.401
(0.52) 		0.173
(0.301) 		0.0163
(0.0743) 		0.0856
(0.198) 		0.235
(0.366) 		0.485
(0.595) 		0.0599
(0.16) 		0.403
(0.521)
GPATCH2 9 (2%) 384 0.093
(0.207) 		0.902
(0.939) 		0.0694
(0.174) 		0.00316
(0.0301) 		0.243
(0.375) 		0.702
(0.776) 		0.0553
(0.153) 		0.904
(0.94) 		0.124
(0.248) 		0.0711
(0.177)
TNFRSF13B 7 (2%) 386 0.15
(0.276) 		0.902
(0.939) 		0.849
(0.895) 		0.362
(0.487) 		0.0499
(0.143) 		0.157
(0.284) 		0.144
(0.271) 		0.387
(0.51) 		0.308
(0.438) 		0.0886
(0.201)
IGBP1 6 (2%) 387 0.111
(0.231) 		0.00722
(0.0471) 		0.0993
(0.216) 		0.143
(0.268) 		0.195
(0.326) 		0.14
(0.266) 		0.56
(0.66) 		0.635
(0.719) 		0.581
(0.677) 		0.11
(0.23)
FAM60A 3 (1%) 390 0.712
(0.784) 		0.258
(0.388) 		0.0411
(0.127) 		0.71
(0.782) 		0.787
(0.846) 		0.49
(0.598) 		0.585
(0.681)
ARV1 5 (1%) 388 0.0708
(0.176) 		0.0822
(0.193) 		0.318
(0.447) 		0.00393
(0.0336) 		0.533
(0.636) 		0.0689
(0.174) 		0.261
(0.391) 		0.831
(0.881) 		1
(1.00) 		0.545
(0.646)
TM9SF3 13 (3%) 380 0.0227
(0.0905) 		0.238
(0.369) 		0.0693
(0.174) 		0.11
(0.23) 		0.0984
(0.214) 		0.0681
(0.173) 		0.997
(1.00) 		0.182
(0.311) 		0.429
(0.546) 		0.299
(0.43)
ISM1 13 (3%) 380 0.023
(0.0911) 		0.0586
(0.158) 		0.576
(0.674) 		0.132
(0.256) 		0.226
(0.357) 		0.253
(0.383) 		0.252
(0.383) 		0.521
(0.626) 		0.222
(0.353) 		0.0546
(0.152)
CLDN5 4 (1%) 389 0.148
(0.275) 		0.544
(0.646) 		0.331
(0.461) 		0.0404
(0.127) 		0.407
(0.525) 		0.395
(0.516) 		0.183
(0.313) 		0.17
(0.299)
ZNF570 12 (3%) 381 0.145
(0.272) 		0.707
(0.78) 		0.618
(0.708) 		0.662
(0.741) 		0.355
(0.481) 		0.449
(0.565) 		0.0277
(0.103) 		0.314
(0.444) 		0.489
(0.598) 		0.977
(1.00)
NKX2-3 8 (2%) 385 0.153
(0.28) 		0.0851
(0.197) 		0.881
(0.921) 		0.0504
(0.144) 		0.38
(0.504) 		0.19
(0.321) 		0.0669
(0.171) 		0.623
(0.712) 		0.141
(0.267) 		0.00052
(0.0109)
VILL 11 (3%) 382 0.0533
(0.149) 		0.211
(0.343) 		0.138
(0.264) 		0.262
(0.391) 		0.13
(0.255) 		0.201
(0.332) 		0.0356
(0.118) 		0.314
(0.444) 		0.382
(0.505) 		0.32
(0.449)
TRIM27 5 (1%) 388 0.0699
(0.175) 		0.234
(0.365) 		0.699
(0.773) 		0.271
(0.402) 		0.00783
(0.0493) 		0.0974
(0.213) 		0.1
(0.217) 		0.246
(0.378) 		0.0598
(0.16) 		0.236
(0.367)
PATL1 7 (2%) 386 0.00382
(0.0334) 		0.432
(0.549) 		0.801
(0.857) 		0.125
(0.249) 		0.519
(0.625) 		0.776
(0.837) 		0.532
(0.636) 		0.874
(0.916) 		0.85
(0.895) 		0.564
(0.664)
TLR4 27 (7%) 366 0.801
(0.857) 		0.149
(0.276) 		0.361
(0.486) 		0.222
(0.354) 		0.517
(0.623) 		0.321
(0.45) 		0.3
(0.431) 		0.0504
(0.144) 		0.0268
(0.101) 		0.976
(1.00)
KIAA0408 14 (4%) 379 0.155
(0.282) 		0.201
(0.332) 		0.872
(0.914) 		0.0246
(0.0953) 		0.719
(0.789) 		0.52
(0.625) 		0.241
(0.372) 		0.872
(0.915) 		1
(1.00) 		0.523
(0.627)
SMC5 10 (3%) 383 0.168
(0.298) 		0.186
(0.316) 		0.524
(0.628) 		0.256
(0.386) 		0.0728
(0.179) 		0.025
(0.0963) 		0.103
(0.22) 		0.0886
(0.201) 		0.706
(0.778) 		0.152
(0.279)
SCNN1D 10 (3%) 383 0.00217
(0.0241) 		0.346
(0.473) 		0.722
(0.791) 		0.958
(0.986) 		0.291
(0.421) 		0.0651
(0.168) 		0.407
(0.525) 		0.619
(0.709) 		0.387
(0.51) 		0.292
(0.422)
TMC2 17 (4%) 376 0.239
(0.37) 		0.438
(0.554) 		0.203
(0.335) 		0.00186
(0.0221) 		0.194
(0.324) 		0.113
(0.234) 		0.184
(0.314) 		0.553
(0.654) 		0.195
(0.326) 		0.318
(0.447)
PBX2 10 (3%) 383 0.291
(0.421) 		0.0475
(0.139) 		0.141
(0.267) 		0.1
(0.217) 		0.292
(0.421) 		0.64
(0.724) 		0.0993
(0.216) 		0.75
(0.816) 		0.104
(0.222) 		0.651
(0.732)
TNNT3 7 (2%) 386 0.194
(0.325) 		0.9
(0.938) 		0.226
(0.357) 		0.829
(0.88) 		0.303
(0.433) 		0.34
(0.468) 		0.0222
(0.0898) 		0.513
(0.62) 		0.308
(0.438) 		0.281
(0.413)
FAH 7 (2%) 386 0.773
(0.835) 		0.779
(0.84) 		0.316
(0.446) 		0.00013
(0.00462) 		0.602
(0.694) 		0.676
(0.753) 		0.234
(0.365) 		0.514
(0.62) 		1
(1.00) 		0.114
(0.235)
MCM8 25 (6%) 368 0.0631
(0.165) 		0.654
(0.735) 		0.213
(0.345) 		0.413
(0.531) 		0.629
(0.715) 		0.974
(1.00) 		0.451
(0.566) 		0.115
(0.235) 		0.888
(0.927) 		0.243
(0.375)
KRT75 37 (9%) 356 0.102
(0.219) 		0.434
(0.551) 		0.679
(0.755) 		0.975
(1.00) 		0.809
(0.863) 		0.792
(0.85) 		0.738
(0.805) 		0.424
(0.541) 		0.307
(0.437) 		0.114
(0.235)
P4HTM 26 (7%) 367 0.872
(0.914) 		0.762
(0.827) 		0.294
(0.423) 		0.783
(0.842) 		0.785
(0.844) 		1
(1.00) 		0.953
(0.982) 		0.625
(0.713) 		0.902
(0.939) 		0.332
(0.461)
YIPF2 7 (2%) 386 0.23
(0.36) 		0.404
(0.523) 		0.743
(0.81) 		0.124
(0.248) 		0.0798
(0.19) 		0.149
(0.276) 		0.102
(0.219) 		0.51
(0.617) 		0.793
(0.85) 		0.756
(0.82)
ENTPD2 6 (2%) 387 0.109
(0.229) 		0.0823
(0.193) 		0.339
(0.467) 		0.307
(0.437) 		0.549
(0.65) 		0.115
(0.236) 		0.177
(0.306) 		1
(1.00) 		1
(1.00) 		0.87
(0.914)
CST1 7 (2%) 386 0.371
(0.496) 		0.903
(0.939) 		0.305
(0.436) 		0.287
(0.418) 		0.865
(0.908) 		0.486
(0.596) 		0.701
(0.776) 		1
(1.00) 		0.733
(0.802) 		0.805
(0.86)
PLA2G1B 6 (2%) 387 1
(1.00) 		0.543
(0.645) 		0.593
(0.685) 		0.924
(0.957) 		0.906
(0.942) 		0.376
(0.5) 		0.458
(0.571) 		0.86
(0.904) 		0.375
(0.499) 		0.683
(0.76)
PAPD4 11 (3%) 382 0.0581
(0.157) 		0.0628
(0.165) 		0.236
(0.367) 		0.0715
(0.177) 		0.571
(0.669) 		0.116
(0.236) 		0.808
(0.862) 		0.316
(0.446) 		0.695
(0.77) 		0.691
(0.766)
DTX3 7 (2%) 386 0.353
(0.479) 		0.25
(0.382) 		0.0983
(0.214) 		0.144
(0.27) 		0.244
(0.376) 		0.253
(0.384) 		0.718
(0.789) 		1
(1.00) 		0.0989
(0.215) 		0.27
(0.401)
BRD8 32 (8%) 361 0.172
(0.3) 		0.868
(0.911) 		0.421
(0.538) 		0.82
(0.873) 		0.487
(0.597) 		0.784
(0.843) 		0.563
(0.663) 		0.402
(0.52) 		0.783
(0.843) 		0.427
(0.544)
CBLL1 8 (2%) 385 0.253
(0.384) 		0.275
(0.406) 		0.384
(0.507) 		0.196
(0.327) 		0.14
(0.266) 		0.929
(0.96) 		0.624
(0.712) 		0.342
(0.47) 		0.636
(0.72) 		0.58
(0.677)
FAAH 5 (1%) 388 0.336
(0.465) 		0.617
(0.707) 		1
(1.00) 		0.625
(0.713) 		0.725
(0.794) 		0.211
(0.343) 		0.683
(0.759) 		1
(1.00) 		0.791
(0.849) 		0.754
(0.819)
FHDC1 17 (4%) 376 0.095
(0.209) 		0.0796
(0.189) 		0.503
(0.61) 		0.413
(0.531) 		0.164
(0.292) 		0.183
(0.313) 		0.419
(0.536) 		0.556
(0.656) 		0.236
(0.367) 		0.238
(0.369)
GLT6D1 14 (4%) 379 0.71
(0.782) 		0.635
(0.719) 		0.246
(0.378) 		0.306
(0.436) 		0.748
(0.814) 		0.111
(0.231) 		0.646
(0.728) 		0.754
(0.819) 		0.666
(0.744) 		0.248
(0.379)
CASP7 4 (1%) 389 0.367
(0.492) 		0.175
(0.303) 		0.414
(0.532) 		0.244
(0.375) 		0.72
(0.789) 		0.281
(0.412) 		0.27
(0.401) 		0.395
(0.515) 		0.229
(0.36) 		0.235
(0.367)
PRKAB1 10 (3%) 383 0.346
(0.473) 		0.704
(0.777) 		0.881
(0.921) 		0.628
(0.715) 		0.766
(0.829) 		0.764
(0.828) 		0.543
(0.645) 		0.83
(0.881) 		0.578
(0.676) 		0.818
(0.872)
EOMES 9 (2%) 384 0.242
(0.373) 		0.322
(0.452) 		0.527
(0.63) 		0.397
(0.517) 		0.938
(0.969) 		0.498
(0.605) 		0.138
(0.263) 		0.655
(0.736) 		0.0645
(0.167) 		0.198
(0.328)
RGS9BP 8 (2%) 385 0.154
(0.281) 		0.12
(0.243) 		0.583
(0.679) 		0.886
(0.925) 		0.926
(0.958) 		0.162
(0.29) 		0.366
(0.492) 		0.892
(0.93) 		1
(1.00) 		0.269
(0.4)
PIK3R3 8 (2%) 385 0.195
(0.326) 		0.0662
(0.17) 		0.974
(1.00) 		1
(1.00) 		0.0832
(0.194) 		0.354
(0.48) 		0.555
(0.655) 		0.172
(0.3) 		1
(1.00) 		0.804
(0.859)
LRRN2 34 (9%) 359 0.294
(0.423) 		0.457
(0.571) 		0.537
(0.64) 		0.726
(0.795) 		0.516
(0.622) 		0.364
(0.489) 		0.152
(0.279) 		0.833
(0.882) 		0.33
(0.46) 		0.535
(0.638)
MYLK3 9 (2%) 384 0.244
(0.375) 		0.606
(0.697) 		0.931
(0.963) 		0.53
(0.634) 		0.479
(0.59) 		0.722
(0.792) 		0.353
(0.479) 		1
(1.00) 		0.737
(0.804) 		0.661
(0.741)
TAS2R42 6 (2%) 387 0.737
(0.804) 		0.176
(0.303) 		0.765
(0.829) 		0.531
(0.634) 		0.906
(0.942) 		0.646
(0.728) 		0.255
(0.385) 		0.339
(0.467) 		0.212
(0.344) 		0.394
(0.515)
WDR5 5 (1%) 388 0.0712
(0.177) 		1
(1.00) 		0.0873
(0.2) 		0.691
(0.766) 		0.274
(0.406) 		0.278
(0.409) 		1
(1.00)
GALNTL1 10 (3%) 383 0.12
(0.242) 		0.83
(0.881) 		0.806
(0.86) 		0.121
(0.244) 		0.523
(0.627) 		0.16
(0.288) 		0.121
(0.243) 		0.42
(0.537) 		0.532
(0.636) 		0.919
(0.953)
DMXL2 41 (10%) 352 0.123
(0.246) 		0.582
(0.678) 		0.492
(0.6) 		0.0808
(0.191) 		0.461
(0.573) 		0.85
(0.895) 		0.666
(0.744) 		0.505
(0.612) 		0.58
(0.677) 		0.256
(0.386)
PANK1 10 (3%) 383 0.119
(0.241) 		0.104
(0.222) 		0.519
(0.625) 		0.186
(0.317) 		0.24
(0.372) 		0.488
(0.597) 		0.42
(0.537) 		0.62
(0.709) 		0.601
(0.693) 		0.505
(0.612)
SIGLEC10 13 (3%) 380 0.125
(0.249) 		0.294
(0.423) 		0.233
(0.364) 		0.169
(0.299) 		0.28
(0.412) 		0.888
(0.926) 		0.756
(0.821) 		0.316
(0.446) 		0.846
(0.893) 		0.633
(0.718)
GAB2 11 (3%) 382 0.359
(0.484) 		0.166
(0.295) 		0.389
(0.51) 		0.121
(0.244) 		0.526
(0.629) 		0.333
(0.462) 		0.173
(0.301) 		0.597
(0.69) 		0.576
(0.674) 		0.314
(0.444)
CSGALNACT1 19 (5%) 374 0.248
(0.379) 		0.807
(0.862) 		0.382
(0.505) 		0.219
(0.35) 		0.33
(0.46) 		0.793
(0.85) 		0.662
(0.741) 		0.426
(0.543) 		0.0772
(0.186) 		0.535
(0.637)
RNASEH2B 4 (1%) 389 0.461
(0.574) 		0.233
(0.364) 		0.606
(0.697) 		0.908
(0.943) 		0.719
(0.789) 		0.277
(0.409) 		0.828
(0.879) 		1
(1.00) 		0.619
(0.708) 		0.81
(0.864)
C20ORF160 7 (2%) 386 0.147
(0.273) 		0.296
(0.426) 		0.453
(0.568) 		0.479
(0.59) 		0.0534
(0.149) 		0.112
(0.232) 		0.611
(0.701) 		0.385
(0.508) 		0.66
(0.74) 		0.271
(0.401)
ART5 5 (1%) 388 0.196
(0.327) 		0.0691
(0.174) 		0.388
(0.51) 		0.26
(0.39) 		0.965
(0.993) 		0.778
(0.838) 		0.775
(0.836) 		0.599
(0.691) 		1
(1.00) 		0.439
(0.555)
PLAGL2 7 (2%) 386 0.517
(0.623) 		0.559
(0.659) 		0.371
(0.495) 		0.124
(0.248) 		0.303
(0.433) 		0.241
(0.372) 		0.792
(0.85) 		0.875
(0.916) 		0.793
(0.85) 		0.22
(0.352)
ULK2 11 (3%) 382 0.434
(0.55) 		0.265
(0.395) 		0.568
(0.667) 		0.0523
(0.147) 		0.245
(0.377) 		0.307
(0.437) 		0.786
(0.845) 		0.773
(0.835) 		0.0996
(0.216) 		0.0729
(0.18)
ICAM4 8 (2%) 385 0.252
(0.383) 		0.704
(0.777) 		0.2
(0.331) 		0.115
(0.236) 		0.521
(0.626) 		0.556
(0.656) 		0.195
(0.326) 		0.125
(0.249) 		0.636
(0.72) 		1
(1.00)
P2RX1 4 (1%) 389 0.0599
(0.16) 		0.107
(0.226) 		0.413
(0.531) 		0.0579
(0.157) 		0.313
(0.443) 		0.55
(0.651) 		0.971
(0.998) 		0.645
(0.727) 		0.23
(0.361) 		0.153
(0.28)
SLC7A10 6 (2%) 387 0.195
(0.326) 		0.772
(0.834) 		0.399
(0.518) 		0.362
(0.487) 		0.747
(0.813) 		0.705
(0.778) 		0.229
(0.36) 		0.141
(0.267) 		0.577
(0.675) 		0.282
(0.413)
KRTAP10-9 8 (2%) 385 0.0709
(0.176) 		0.704
(0.777) 		0.368
(0.493) 		0.213
(0.345) 		0.131
(0.256) 		0.47
(0.583) 		0.0763
(0.185) 		0.227
(0.359) 		0.244
(0.375) 		0.632
(0.718)
RPS20 4 (1%) 389 0.368
(0.493) 		0.686
(0.762) 		0.527
(0.63) 		0.346
(0.473) 		0.719
(0.789) 		0.521
(0.626) 		0.944
(0.974) 		0.393
(0.514)
BRMS1 6 (2%) 387 0.111
(0.231) 		0.508
(0.615) 		0.84
(0.888) 		0.245
(0.376) 		0.747
(0.813) 		0.154
(0.281) 		0.908
(0.943) 		1
(1.00) 		0.735
(0.803) 		0.428
(0.546)
ZNF23 3 (1%) 390 0.629
(0.716) 		0.0876
(0.2) 		0.623
(0.712) 		0.766
(0.829)
FBXO48 5 (1%) 388 0.367
(0.492) 		0.643
(0.726) 		0.0511
(0.145) 		0.27
(0.401) 		0.69
(0.766) 		0.257
(0.387) 		0.101
(0.218) 		0.25
(0.382) 		0.229
(0.36) 		0.235
(0.366)
P2RY4 12 (3%) 381 0.922
(0.955) 		0.493
(0.6) 		0.568
(0.667) 		0.31
(0.441) 		0.743
(0.809) 		0.66
(0.74) 		0.974
(1.00) 		0.669
(0.747) 		0.858
(0.903) 		0.682
(0.759)
OR5M3 19 (5%) 374 0.238
(0.369) 		0.275
(0.406) 		0.348
(0.474) 		0.128
(0.253) 		0.422
(0.539) 		0.0705
(0.176) 		0.0922
(0.206) 		0.295
(0.425) 		0.286
(0.417) 		0.0658
(0.169)
GNPNAT1 6 (2%) 387 0.52
(0.625) 		0.932
(0.963) 		0.822
(0.874) 		0.626
(0.713) 		0.725
(0.794) 		0.651
(0.732) 		0.548
(0.649) 		0.401
(0.519) 		0.735
(0.803) 		0.61
(0.7)
TMEM55A 3 (1%) 390 0.715
(0.786) 		0.774
(0.836) 		0.134
(0.26) 		0.63
(0.716) 		0.0877
(0.2) 		1
(1.00) 		0.763
(0.827)
SP100 18 (5%) 375 0.403
(0.521) 		0.332
(0.462) 		0.304
(0.435) 		0.077
(0.185) 		0.094
(0.208) 		0.917
(0.951) 		0.524
(0.628) 		0.148
(0.275) 		0.103
(0.221) 		0.309
(0.439)
UBQLN2 7 (2%) 386 0.195
(0.326) 		1
(1.00) 		0.2
(0.331) 		0.342
(0.47) 		0.685
(0.761) 		0.292
(0.421) 		0.138
(0.264) 		0.876
(0.918) 		0.214
(0.346) 		0.382
(0.505)
HOXB7 6 (2%) 387 0.112
(0.232) 		0.0911
(0.205) 		0.252
(0.383) 		0.362
(0.487) 		0.677
(0.754) 		0.267
(0.398) 		0.164
(0.292) 		0.543
(0.645) 		0.453
(0.568) 		0.0628
(0.165)
FAM46D 10 (3%) 383 0.293
(0.422) 		0.396
(0.516) 		0.263
(0.392) 		0.311
(0.442) 		0.509
(0.615) 		0.194
(0.325) 		0.856
(0.901) 		0.679
(0.756) 		0.161
(0.288) 		0.126
(0.25)
DNAJB13 6 (2%) 387 0.112
(0.232) 		0.505
(0.612) 		0.413
(0.531) 		0.143
(0.268) 		0.781
(0.841) 		0.156
(0.283) 		0.984
(1.00) 		0.637
(0.721) 		0.85
(0.895) 		0.396
(0.516)
ANTXR1 10 (3%) 383 0.166
(0.295) 		0.168
(0.297) 		0.498
(0.605) 		0.386
(0.508) 		0.49
(0.598) 		0.264
(0.394) 		0.681
(0.758) 		1
(1.00) 		0.28
(0.412) 		0.895
(0.933)
SYT4 14 (4%) 379 0.0675
(0.172) 		0.189
(0.32) 		0.552
(0.653) 		0.471
(0.583) 		0.524
(0.628) 		0.479
(0.59) 		0.251
(0.383) 		0.189
(0.32) 		0.92
(0.953) 		0.219
(0.351)
TAPT1 6 (2%) 387 0.519
(0.625) 		0.699
(0.773) 		0.314
(0.444) 		0.0804
(0.19) 		0.75
(0.816) 		0.704
(0.777) 		0.146
(0.273) 		0.544
(0.646) 		0.0604
(0.161) 		0.108
(0.228)
PODN 12 (3%) 381 0.054
(0.15) 		0.763
(0.827) 		0.699
(0.773) 		1
(1.00) 		0.379
(0.503) 		0.811
(0.865) 		0.319
(0.448) 		0.519
(0.624) 		0.518
(0.624) 		0.864
(0.908)
C2ORF42 12 (3%) 381 0.841
(0.889) 		0.205
(0.337) 		0.439
(0.555) 		0.654
(0.735) 		0.277
(0.408) 		0.353
(0.479) 		0.283
(0.414) 		0.19
(0.321) 		0.769
(0.832) 		0.296
(0.425)
KIF2B 32 (8%) 361 0.682
(0.759) 		0.61
(0.7) 		0.386
(0.509) 		0.576
(0.674) 		0.585
(0.681) 		0.225
(0.356) 		0.634
(0.719) 		0.248
(0.38) 		0.634
(0.719) 		0.872
(0.914)
SCAMP2 7 (2%) 386 0.148
(0.275) 		0.536
(0.639) 		0.0569
(0.155) 		0.115
(0.236) 		0.452
(0.567) 		0.0548
(0.152) 		0.639
(0.722) 		0.075
(0.183) 		0.373
(0.498) 		0.191
(0.322)
HMGCLL1 10 (3%) 383 0.756
(0.821) 		0.296
(0.426) 		0.643
(0.726) 		0.578
(0.675) 		0.795
(0.851) 		0.235
(0.366) 		0.813
(0.866) 		0.75
(0.816) 		0.243
(0.375) 		0.324
(0.454)
BIN3 4 (1%) 389 0.0623
(0.164) 		0.07
(0.175) 		0.628
(0.714) 		0.188
(0.319) 		0.0761
(0.185) 		0.51
(0.617) 		1
(1.00) 		0.563
(0.662)
SLC25A17 4 (1%) 389 0.458
(0.572) 		0.19
(0.321) 		0.832
(0.882) 		0.719
(0.789) 		0.147
(0.274) 		0.655
(0.735) 		0.818
(0.871)
ZNF285 9 (2%) 384 0.479
(0.59) 		0.122
(0.245) 		0.677
(0.754) 		0.198
(0.328) 		0.64
(0.723) 		0.938
(0.969) 		0.221
(0.353) 		0.587
(0.681) 		0.347
(0.473) 		0.739
(0.806)
NUP35 6 (2%) 387 0.353
(0.479) 		0.535
(0.638) 		1
(1.00) 		1
(1.00) 		0.307
(0.437) 		0.322
(0.451) 		0.833
(0.882) 		0.863
(0.907) 		0.143
(0.269) 		0.808
(0.862)
DPAGT1 6 (2%) 387 0.518
(0.624) 		1
(1.00) 		0.917
(0.951) 		0.477
(0.589) 		0.643
(0.726) 		0.187
(0.317) 		0.779
(0.84) 		0.543
(0.645) 		1
(1.00) 		0.0939
(0.208)
ARSJ 6 (2%) 387 0.108
(0.227) 		0.414
(0.532) 		0.171
(0.3) 		0.669
(0.747) 		0.623
(0.712) 		0.355
(0.48) 		0.477
(0.589) 		0.469
(0.581) 		0.737
(0.804) 		0.902
(0.939)
PNMT 11 (3%) 382 0.222
(0.353) 		0.868
(0.912) 		0.858
(0.902) 		0.229
(0.36) 		0.794
(0.851) 		0.486
(0.596) 		0.435
(0.552) 		0.597
(0.69) 		0.55
(0.651) 		0.241
(0.372)
SMAP2 5 (1%) 388 0.196
(0.326) 		0.176
(0.303) 		0.217
(0.349) 		0.364
(0.489) 		0.289
(0.419) 		0.227
(0.358) 		0.278
(0.409) 		0.488
(0.597) 		0.553
(0.654) 		0.402
(0.521)
APITD1 5 (1%) 388 0.452
(0.567) 		0.0706
(0.176) 		0.242
(0.374) 		1
(1.00) 		0.209
(0.341) 		0.212
(0.344) 		0.884
(0.923) 		1
(1.00) 		0.684
(0.76) 		0.835
(0.883)
TMEM64 7 (2%) 386 0.569
(0.667) 		0.496
(0.604) 		0.267
(0.398) 		0.272
(0.403) 		0.52
(0.625) 		0.177
(0.305) 		0.221
(0.352) 		0.441
(0.557) 		0.878
(0.918) 		0.692
(0.768)
ARPC5L 3 (1%) 390 0.105
(0.223) 		0.224
(0.356) 		0.586
(0.681)
TEX13A 5 (1%) 388 0.196
(0.327) 		0.696
(0.771) 		0.57
(0.668) 		0.0583
(0.157) 		0.262
(0.392) 		0.651
(0.732) 		0.339
(0.467) 		1
(1.00) 		0.213
(0.345) 		0.429
(0.546)
MOCS2 5 (1%) 388 0.452
(0.567) 		0.497
(0.604) 		1
(1.00) 		0.533
(0.636) 		0.275
(0.406) 		0.101
(0.218) 		0.248
(0.38)
DGKD 6 (2%) 387 0.109
(0.229) 		0.217
(0.349) 		0.626
(0.713) 		0.36
(0.486) 		0.625
(0.713) 		0.144
(0.271) 		0.806
(0.861) 		1
(1.00) 		0.458
(0.571) 		0.646
(0.728)
MYCT1 8 (2%) 385 0.891
(0.929) 		0.272
(0.403) 		0.154
(0.281) 		0.0791
(0.188) 		0.496
(0.603) 		0.425
(0.542) 		0.0617
(0.163) 		0.389
(0.51) 		0.101
(0.217) 		0.233
(0.364)
CDX2 4 (1%) 389 0.0817
(0.192) 		0.251
(0.382) 		0.845
(0.892) 		0.246
(0.378) 		0.721
(0.79) 		0.13
(0.255) 		0.0563
(0.155) 		0.395
(0.516) 		0.254
(0.384) 		0.149
(0.276)
AFP 4 (1%) 389 0.083
(0.194) 		0.684
(0.761) 		0.569
(0.667) 		0.675
(0.752) 		0.558
(0.658) 		0.789
(0.848) 		0.945
(0.974) 		1
(1.00) 		0.619
(0.708) 		1
(1.00)
KIF6 12 (3%) 381 0.222
(0.354) 		0.17
(0.299) 		0.881
(0.921) 		0.378
(0.502) 		0.382
(0.505) 		0.258
(0.388) 		0.891
(0.929) 		0.481
(0.592) 		0.693
(0.768) 		0.902
(0.939)
E2F5 4 (1%) 389 0.459
(0.572) 		0.3
(0.43) 		0.845
(0.892) 		0.0929
(0.207) 		0.945
(0.975) 		1
(1.00) 		0.809
(0.863) 		0.218
(0.35)
ERV3 5 (1%) 388 1
(1.00) 		0.452
(0.567) 		0.805
(0.86) 		0.307
(0.437) 		0.763
(0.827) 		0.451
(0.566) 		0.358
(0.484) 		0.146
(0.272) 		0.229
(0.36) 		0.456
(0.57)
MNS1 8 (2%) 385 0.128
(0.252) 		0.0548
(0.152) 		0.88
(0.92) 		0.42
(0.537) 		0.119
(0.241) 		0.351
(0.477) 		0.0864
(0.199) 		0.171
(0.299) 		1
(1.00) 		0.174
(0.301)
GPR137B 6 (2%) 387 0.352
(0.478) 		0.413
(0.531) 		0.233
(0.364) 		0.247
(0.378) 		0.791
(0.849) 		0.0662
(0.17) 		0.672
(0.75) 		0.861
(0.905) 		0.446
(0.562) 		0.352
(0.478)
PLK1 16 (4%) 377 0.0808
(0.191) 		0.0553
(0.153) 		0.299
(0.429) 		0.141
(0.267) 		0.231
(0.362) 		0.345
(0.472) 		0.404
(0.522) 		0.226
(0.357) 		0.582
(0.678) 		0.458
(0.571)
PYHIN1 11 (3%) 382 0.6
(0.692) 		0.0825
(0.193) 		0.399
(0.518) 		0.711
(0.783) 		0.325
(0.454) 		0.248
(0.38) 		0.0714
(0.177) 		0.541
(0.644) 		0.348
(0.474) 		0.829
(0.88)
POLE3 3 (1%) 390 0.104
(0.222) 		0.33
(0.46) 		0.75
(0.816) 		0.088
(0.201) 		0.791
(0.849) 		0.762
(0.826) 		1
(1.00) 		0.927
(0.96)
CHMP7 5 (1%) 388 0.0707
(0.176) 		0.251
(0.383) 		0.82
(0.873) 		0.477
(0.589) 		0.78
(0.84) 		0.407
(0.525) 		0.776
(0.837) 		1
(1.00) 		0.459
(0.572) 		0.13
(0.255)
NEK8 11 (3%) 382 0.0561
(0.154) 		0.342
(0.47) 		0.407
(0.525) 		0.131
(0.256) 		0.0644
(0.167) 		0.253
(0.384) 		0.591
(0.684) 		0.0615
(0.163) 		0.281
(0.412) 		0.321
(0.45)
TBC1D8B 9 (2%) 384 0.386
(0.508) 		0.441
(0.557) 		0.113
(0.233) 		0.666
(0.744) 		0.779
(0.84) 		0.786
(0.845) 		0.484
(0.595) 		1
(1.00) 		0.382
(0.505) 		0.0675
(0.172)
CD3EAP 10 (3%) 383 0.119
(0.241) 		0.499
(0.606) 		0.501
(0.607) 		0.196
(0.327) 		0.243
(0.375) 		0.631
(0.717) 		0.15
(0.277) 		0.374
(0.498) 		0.0881
(0.201) 		0.109
(0.228)
UTY 3 (1%) 390 0.103
(0.221) 		0.0725
(0.179) 		0.0579
(0.157) 		1
(1.00) 		0.587
(0.681)
FOXQ1 3 (1%) 390 0.105
(0.223) 		0.317
(0.447) 		0.188
(0.319) 		0.222
(0.354) 		1
(1.00)
TMEM116 3 (1%) 390 0.713
(0.785) 		0.776
(0.837) 		0.136
(0.262) 		0.0801
(0.19) 		0.587
(0.681)
C9ORF152 3 (1%) 390 0.716
(0.787) 		0.569
(0.667) 		0.883
(0.923) 		0.629
(0.716) 		0.89
(0.928) 		1
(1.00) 		0.589
(0.682)
YIF1A 5 (1%) 388 0.453
(0.568) 		0.456
(0.57) 		0.916
(0.951) 		0.361
(0.486) 		0.51
(0.616) 		0.106
(0.225) 		1
(1.00) 		1
(1.00) 		0.682
(0.759) 		1
(1.00)
C12ORF40 7 (2%) 386 0.568
(0.667) 		0.542
(0.644) 		0.0847
(0.197) 		0.0917
(0.206) 		0.981
(1.00) 		0.201
(0.332) 		0.782
(0.842) 		0.512
(0.618) 		0.346
(0.473) 		0.448
(0.563)
OR2M5 15 (4%) 378 0.434
(0.551) 		0.26
(0.39) 		0.297
(0.428) 		0.835
(0.883) 		0.779
(0.839) 		0.796
(0.853) 		0.492
(0.599) 		0.938
(0.969) 		0.5
(0.606) 		0.334
(0.463)
VASH1 7 (2%) 386 0.111
(0.231) 		0.411
(0.529) 		0.822
(0.874) 		0.143
(0.269) 		0.227
(0.358) 		0.0547
(0.152) 		0.208
(0.34) 		0.214
(0.346) 		1
(1.00) 		0.87
(0.913)
PRB1 3 (1%) 390 0.148
(0.275) 		0.411
(0.529) 		0.0575
(0.156) 		0.157
(0.284) 		0.0861
(0.198) 		0.491
(0.599) 		0.588
(0.682)
PAPOLB 14 (4%) 379 0.157
(0.284) 		0.869
(0.913) 		0.635
(0.719) 		0.884
(0.924) 		0.837
(0.885) 		0.792
(0.85) 		0.161
(0.289) 		0.499
(0.606) 		0.124
(0.248) 		0.611
(0.702)
EVI2B 9 (2%) 384 0.66
(0.74) 		0.728
(0.796) 		0.561
(0.661) 		0.484
(0.594) 		0.632
(0.718) 		0.134
(0.259) 		0.207
(0.34) 		0.381
(0.505) 		1
(1.00) 		0.346
(0.473)
MAP7D2 5 (1%) 388 0.695
(0.77) 		0.803
(0.859) 		0.417
(0.534) 		0.189
(0.321) 		0.908
(0.943) 		0.478
(0.59) 		0.614
(0.704) 		0.398
(0.518) 		0.462
(0.575) 		0.113
(0.234)
POU5F1B 8 (2%) 385 0.618
(0.708) 		0.062
(0.164) 		0.36
(0.486) 		0.286
(0.417) 		0.127
(0.251) 		0.349
(0.475) 		0.92
(0.953) 		0.627
(0.714) 		0.877
(0.918) 		1
(1.00)
LRRFIP2 8 (2%) 385 0.0792
(0.189) 		0.279
(0.411) 		0.359
(0.485) 		0.166
(0.296) 		0.259
(0.389) 		0.183
(0.313) 		0.481
(0.592) 		0.626
(0.713) 		0.12
(0.242) 		0.41
(0.528)
PAQR9 16 (4%) 377 0.89
(0.929) 		0.225
(0.356) 		0.787
(0.846) 		0.631
(0.716) 		0.568
(0.667) 		0.928
(0.96) 		0.349
(0.475) 		0.192
(0.323) 		0.701
(0.775) 		0.16
(0.288)
BTBD10 5 (1%) 388 0.337
(0.466) 		0.453
(0.568) 		0.821
(0.874) 		0.713
(0.785) 		0.507
(0.614) 		0.328
(0.458) 		0.912
(0.947) 		1
(1.00)
IKBIP 3 (1%) 390 0.715
(0.786) 		0.185
(0.315) 		0.184
(0.314) 		0.135
(0.261) 		0.315
(0.445) 		1
(1.00) 		0.0816
(0.192) 		0.589
(0.682) 		0.464
(0.576) 		0.568
(0.667)
LEFTY1 3 (1%) 390 1
(1.00) 		0.302
(0.432) 		0.313
(0.443) 		0.584
(0.68) 		0.555
(0.656) 		0.62
(0.709) 		0.211
(0.343) 		0.763
(0.827)
ZIM3 11 (3%) 382 0.0893
(0.202) 		0.831
(0.881) 		0.377
(0.501) 		0.271
(0.402) 		0.955
(0.985) 		0.176
(0.304) 		0.367
(0.492) 		1
(1.00) 		0.114
(0.235) 		0.861
(0.905)
PIK3CB 11 (3%) 382 0.221
(0.352) 		0.429
(0.546) 		0.424
(0.541) 		0.261
(0.39) 		0.191
(0.322) 		0.442
(0.557) 		0.468
(0.581) 		0.918
(0.952) 		1
(1.00) 		1
(1.00)
LAT2 8 (2%) 385 0.33
(0.46) 		0.354
(0.48) 		0.422
(0.54) 		0.795
(0.852) 		0.965
(0.993) 		0.274
(0.405) 		0.505
(0.612) 		0.436
(0.552) 		0.338
(0.466) 		0.503
(0.61)
ARID3A 6 (2%) 387 0.111
(0.231) 		0.073
(0.18) 		0.639
(0.722) 		0.244
(0.376) 		0.0616
(0.163) 		0.705
(0.778) 		0.491
(0.599) 		0.139
(0.265) 		0.252
(0.383) 		0.113
(0.234)
CDKN2AIP 3 (1%) 390 0.712
(0.784) 		0.185
(0.315) 		0.0832
(0.194) 		0.189
(0.32) 		0.101
(0.218) 		0.587
(0.682) 		0.251
(0.382) 		0.172
(0.3)
IFNA17 4 (1%) 389 1
(1.00) 		0.371
(0.496) 		0.0868
(0.199) 		0.385
(0.508) 		0.665
(0.743) 		0.774
(0.836) 		0.311
(0.441) 		0.513
(0.62) 		0.255
(0.385) 		0.289
(0.42)
CNPY4 4 (1%) 389 0.601
(0.693) 		0.122
(0.245) 		0.217
(0.349) 		0.303
(0.433) 		0.912
(0.947) 		0.217
(0.348) 		0.515
(0.621)
DMC1 8 (2%) 385 0.196
(0.326) 		0.114
(0.234) 		0.37
(0.495) 		0.952
(0.981) 		0.113
(0.234) 		0.241
(0.372) 		0.423
(0.54) 		0.171
(0.299) 		0.34
(0.468) 		0.281
(0.413)
RAE1 8 (2%) 385 0.701
(0.776) 		0.251
(0.382) 		0.586
(0.681) 		1
(1.00) 		1
(1.00) 		0.837
(0.885) 		0.592
(0.684) 		0.794
(0.851) 		0.456
(0.57) 		0.913
(0.948)
ZC3H8 4 (1%) 389 1
(1.00) 		0.303
(0.434) 		0.417
(0.534) 		0.908
(0.943) 		0.421
(0.538) 		0.611
(0.701) 		0.918
(0.951) 		0.303
(0.433) 		1
(1.00) 		0.524
(0.628)
C20ORF195 9 (2%) 384 0.0709
(0.176) 		0.626
(0.713) 		0.171
(0.3) 		0.109
(0.228) 		0.121
(0.244) 		0.054
(0.15) 		0.412
(0.531) 		0.0963
(0.211) 		0.77
(0.833) 		0.609
(0.699)
OSBPL6 18 (5%) 375 0.136
(0.261) 		0.374
(0.498) 		0.385
(0.508) 		0.0827
(0.193) 		0.61
(0.7) 		0.293
(0.422) 		0.713
(0.784) 		0.453
(0.568) 		0.587
(0.681) 		0.935
(0.966)
HORMAD1 7 (2%) 386 0.148
(0.275) 		0.0817
(0.192) 		0.672
(0.75) 		0.288
(0.419) 		0.165
(0.294) 		0.804
(0.859) 		0.424
(0.541) 		0.877
(0.918) 		0.228
(0.359) 		0.541
(0.644)
SERPING1 8 (2%) 385 0.621
(0.71) 		0.635
(0.719) 		0.901
(0.939) 		0.528
(0.631) 		0.561
(0.661) 		0.537
(0.64) 		0.336
(0.465) 		1
(1.00) 		0.546
(0.647) 		0.966
(0.993)
CD1E 11 (3%) 382 0.914
(0.948) 		0.453
(0.568) 		0.454
(0.568) 		0.817
(0.871) 		0.888
(0.926) 		0.971
(0.998) 		0.287
(0.418) 		0.539
(0.642) 		0.817
(0.871) 		0.79
(0.848)
ERI1 4 (1%) 389 0.795
(0.852) 		0.0519
(0.147) 		0.124
(0.247) 		0.63
(0.716) 		0.888
(0.927) 		0.65
(0.731) 		0.644
(0.727)
STK36 8 (2%) 385 0.153
(0.28) 		0.925
(0.957) 		0.674
(0.751) 		0.286
(0.417) 		0.116
(0.237) 		0.354
(0.48) 		0.0929
(0.207) 		0.488
(0.597) 		0.879
(0.919) 		0.291
(0.421)
GLTPD1 4 (1%) 389 0.0627
(0.165) 		0.332
(0.461) 		0.42
(0.537) 		0.271
(0.402) 		0.631
(0.717) 		0.79
(0.848) 		0.651
(0.732) 		0.643
(0.726) 		0.553
(0.654) 		0.124
(0.248)
D4S234E 7 (2%) 386 0.0566
(0.155) 		0.067
(0.171) 		0.28
(0.412) 		0.287
(0.417) 		0.402
(0.52) 		0.198
(0.328) 		0.44
(0.556) 		0.875
(0.916) 		0.833
(0.882) 		0.496
(0.603)
EGLN1 5 (1%) 388 0.199
(0.33) 		0.0699
(0.175) 		0.438
(0.555) 		0.148
(0.275) 		0.207
(0.34) 		0.087
(0.199) 		0.413
(0.531) 		0.6
(0.692) 		1
(1.00) 		0.871
(0.914)
CSF1 5 (1%) 388 0.0705
(0.176) 		0.14
(0.266) 		0.132
(0.257) 		0.387
(0.51) 		0.38
(0.504) 		0.0967
(0.211) 		0.961
(0.989) 		1
(1.00) 		0.79
(0.848) 		0.928
(0.96)
ARRDC5 4 (1%) 389 0.0611
(0.162) 		0.331
(0.461) 		0.61
(0.7) 		0.269
(0.4) 		0.251
(0.382) 		0.371
(0.496) 		0.787
(0.846) 		0.219
(0.35) 		1
(1.00) 		0.237
(0.368)
PTPN12 12 (3%) 381 0.134
(0.26) 		0.101
(0.217) 		0.763
(0.827) 		0.139
(0.265) 		0.522
(0.627) 		0.371
(0.496) 		0.0623
(0.164) 		0.729
(0.797) 		0.174
(0.302) 		0.299
(0.43)
KCNE1 4 (1%) 389 0.46
(0.572) 		0.643
(0.726) 		0.608
(0.699) 		0.192
(0.323) 		0.23
(0.36) 		0.148
(0.275) 		0.221
(0.353) 		0.394
(0.515) 		0.183
(0.312) 		0.526
(0.63)
SFRS2 4 (1%) 389 0.062
(0.163) 		0.175
(0.303) 		0.846
(0.892) 		0.908
(0.943) 		0.383
(0.506) 		0.224
(0.355) 		0.59
(0.683) 		0.221
(0.352) 		0.175
(0.303) 		0.796
(0.852)
AAMP 3 (1%) 390 0.38
(0.504) 		0.158
(0.285) 		0.188
(0.319) 		0.224
(0.355) 		0.588
(0.682)
SPOCK1 13 (3%) 380 0.603
(0.694) 		0.149
(0.276) 		0.39
(0.511) 		0.112
(0.233) 		0.559
(0.659) 		0.0809
(0.191) 		0.784
(0.843) 		0.799
(0.855) 		0.586
(0.681) 		0.254
(0.384)
SERPINB8 8 (2%) 385 0.0712
(0.177) 		0.568
(0.667) 		0.0784
(0.187) 		0.115
(0.236) 		0.0731
(0.18) 		0.114
(0.234) 		0.512
(0.618) 		0.71
(0.782) 		0.117
(0.238) 		0.632
(0.717)
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TP53 MUTATED 133 26 25 2
TP53 WILD-TYPE 71 111 22 1

Figure S1.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S2.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TP53 MUTATED 17 50 6 70 26
TP53 WILD-TYPE 22 46 38 18 54

Figure S2.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.72

Table S3.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TP53 MUTATED 15 41 35 36 25
TP53 WILD-TYPE 11 38 38 46 33
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.63

Table S4.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TP53 MUTATED 67 22 33 30
TP53 WILD-TYPE 60 29 38 39
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S5.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TP53 MUTATED 60 29 31 29 27
TP53 WILD-TYPE 24 56 54 40 20

Figure S3.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.0079

Table S6.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TP53 MUTATED 45 20 64 47
TP53 WILD-TYPE 50 54 57 33

Figure S4.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S7.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TP53 MUTATED 30 23 33 37 18 46
TP53 WILD-TYPE 22 41 39 67 22 13

Figure S5.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S8.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TP53 MUTATED 91 23 73
TP53 WILD-TYPE 126 52 26

Figure S6.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.29

Table S9.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TP53 MUTATED 68 49 32
TP53 WILD-TYPE 53 59 40
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S10.  Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TP53 MUTATED 37 23 21 42 26
TP53 WILD-TYPE 51 43 24 13 21

Figure S7.  Get High-res Image Gene #1: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S11.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARID1A MUTATED 19 66 13 0
ARID1A WILD-TYPE 185 71 34 3

Figure S8.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S12.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARID1A MUTATED 9 37 19 7 11
ARID1A WILD-TYPE 30 59 25 81 69

Figure S9.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S13.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARID1A MUTATED 4 25 20 13 17
ARID1A WILD-TYPE 22 54 53 69 41
'ARID1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00337 (Fisher's exact test), Q value = 0.031

Table S14.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARID1A MUTATED 23 23 18 15
ARID1A WILD-TYPE 104 28 53 54

Figure S10.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.0084

Table S15.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARID1A MUTATED 11 21 37 15 10
ARID1A WILD-TYPE 73 64 48 54 37

Figure S11.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.095

Table S16.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARID1A MUTATED 26 20 20 28
ARID1A WILD-TYPE 69 54 101 52

Figure S12.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00078 (Fisher's exact test), Q value = 0.013

Table S17.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARID1A MUTATED 18 25 19 26 6 5
ARID1A WILD-TYPE 34 39 53 78 34 54

Figure S13.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.066

Table S18.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARID1A MUTATED 67 16 16
ARID1A WILD-TYPE 150 59 83

Figure S14.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S19.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARID1A MUTATED 33 19 20
ARID1A WILD-TYPE 88 89 52
'ARID1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00692 (Fisher's exact test), Q value = 0.046

Table S20.  Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARID1A MUTATED 24 12 9 7 20
ARID1A WILD-TYPE 64 54 36 48 27

Figure S15.  Get High-res Image Gene #2: 'ARID1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S21.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RNF43 MUTATED 4 36 5 0
RNF43 WILD-TYPE 200 101 42 3

Figure S16.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S22.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RNF43 MUTATED 2 25 5 1 2
RNF43 WILD-TYPE 37 71 39 87 78

Figure S17.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.059

Table S23.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RNF43 MUTATED 3 17 10 3 6
RNF43 WILD-TYPE 23 62 63 79 52

Figure S18.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S24.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RNF43 MUTATED 9 17 10 3
RNF43 WILD-TYPE 118 34 61 66

Figure S19.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0067

Table S25.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RNF43 MUTATED 1 8 17 6 9
RNF43 WILD-TYPE 83 77 68 63 38

Figure S20.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S26.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RNF43 MUTATED 11 4 2 24
RNF43 WILD-TYPE 84 70 119 56

Figure S21.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S27.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RNF43 MUTATED 13 14 9 7 2 0
RNF43 WILD-TYPE 39 50 63 97 38 59

Figure S22.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S28.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RNF43 MUTATED 38 4 3
RNF43 WILD-TYPE 179 71 96

Figure S23.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.17

Table S29.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RNF43 MUTATED 14 5 10
RNF43 WILD-TYPE 107 103 62
'RNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.0076

Table S30.  Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RNF43 MUTATED 11 2 6 0 10
RNF43 WILD-TYPE 77 64 39 55 37

Figure S24.  Get High-res Image Gene #3: 'RNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S31.  Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
XYLT2 MUTATED 3 29 5 0
XYLT2 WILD-TYPE 201 108 42 3

Figure S25.  Get High-res Image Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'XYLT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S32.  Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
XYLT2 MUTATED 2 24 5 1 1
XYLT2 WILD-TYPE 37 72 39 87 79

Figure S26.  Get High-res Image Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'XYLT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00355 (Fisher's exact test), Q value = 0.032

Table S33.  Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
XYLT2 MUTATED 1 11 12 1 7
XYLT2 WILD-TYPE 25 68 61 81 51

Figure S27.  Get High-res Image Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'XYLT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S34.  Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
XYLT2 MUTATED 7 15 8 2
XYLT2 WILD-TYPE 120 36 63 67

Figure S28.  Get High-res Image Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00295 (Fisher's exact test), Q value = 0.029

Table S35.  Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
XYLT2 MUTATED 2 8 17 5 3
XYLT2 WILD-TYPE 82 77 68 64 44

Figure S29.  Get High-res Image Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S36.  Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
XYLT2 MUTATED 10 4 2 19
XYLT2 WILD-TYPE 85 70 119 61

Figure S30.  Get High-res Image Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S37.  Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
XYLT2 MUTATED 10 10 9 5 2 2
XYLT2 WILD-TYPE 42 54 63 99 38 57

Figure S31.  Get High-res Image Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00993 (Fisher's exact test), Q value = 0.056

Table S38.  Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
XYLT2 MUTATED 30 3 5
XYLT2 WILD-TYPE 187 72 94

Figure S32.  Get High-res Image Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.076 (Fisher's exact test), Q value = 0.18

Table S39.  Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
XYLT2 MUTATED 13 5 10
XYLT2 WILD-TYPE 108 103 62
'XYLT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00124 (Fisher's exact test), Q value = 0.018

Table S40.  Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
XYLT2 MUTATED 10 2 4 1 11
XYLT2 WILD-TYPE 78 64 41 54 36

Figure S33.  Get High-res Image Gene #4: 'XYLT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00159 (Fisher's exact test), Q value = 0.02

Table S41.  Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KRAS MUTATED 9 23 5 0
KRAS WILD-TYPE 195 114 42 3

Figure S34.  Get High-res Image Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0015 (Fisher's exact test), Q value = 0.02

Table S42.  Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KRAS MUTATED 6 13 6 2 2
KRAS WILD-TYPE 33 83 38 86 78

Figure S35.  Get High-res Image Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.75

Table S43.  Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KRAS MUTATED 1 9 10 7 5
KRAS WILD-TYPE 25 70 63 75 53
'KRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00452 (Fisher's exact test), Q value = 0.036

Table S44.  Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KRAS MUTATED 9 13 5 5
KRAS WILD-TYPE 118 38 66 64

Figure S36.  Get High-res Image Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.005

Table S45.  Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KRAS MUTATED 2 6 18 2 5
KRAS WILD-TYPE 82 79 67 67 42

Figure S37.  Get High-res Image Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.0076

Table S46.  Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KRAS MUTATED 6 8 3 16
KRAS WILD-TYPE 89 66 118 64

Figure S38.  Get High-res Image Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00285 (Fisher's exact test), Q value = 0.028

Table S47.  Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KRAS MUTATED 9 10 10 6 0 2
KRAS WILD-TYPE 43 54 62 98 40 57

Figure S39.  Get High-res Image Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0852 (Fisher's exact test), Q value = 0.2

Table S48.  Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KRAS MUTATED 27 5 5
KRAS WILD-TYPE 190 70 94
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0518 (Fisher's exact test), Q value = 0.15

Table S49.  Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KRAS MUTATED 15 7 2
KRAS WILD-TYPE 106 101 70
'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S50.  Gene #5: 'KRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KRAS MUTATED 11 3 2 4 4
KRAS WILD-TYPE 77 63 43 51 43
'LARP4B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S51.  Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LARP4B MUTATED 4 24 2 0
LARP4B WILD-TYPE 200 113 45 3

Figure S40.  Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LARP4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S52.  Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LARP4B MUTATED 2 17 2 0 2
LARP4B WILD-TYPE 37 79 42 88 78

Figure S41.  Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.089

Table S53.  Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LARP4B MUTATED 1 9 7 1 8
LARP4B WILD-TYPE 25 70 66 81 50

Figure S42.  Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LARP4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S54.  Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LARP4B MUTATED 5 13 7 1
LARP4B WILD-TYPE 122 38 64 68

Figure S43.  Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.085

Table S55.  Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LARP4B MUTATED 2 4 12 4 6
LARP4B WILD-TYPE 82 81 73 65 41

Figure S44.  Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.011

Table S56.  Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LARP4B MUTATED 6 4 3 15
LARP4B WILD-TYPE 89 70 118 65

Figure S45.  Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00424 (Fisher's exact test), Q value = 0.035

Table S57.  Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LARP4B MUTATED 7 11 6 4 1 1
LARP4B WILD-TYPE 45 53 66 100 39 58

Figure S46.  Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00688 (Fisher's exact test), Q value = 0.046

Table S58.  Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LARP4B MUTATED 25 2 3
LARP4B WILD-TYPE 192 73 96

Figure S47.  Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.065

Table S59.  Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LARP4B MUTATED 13 2 7
LARP4B WILD-TYPE 108 106 65

Figure S48.  Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'LARP4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00086 (Fisher's exact test), Q value = 0.014

Table S60.  Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LARP4B MUTATED 5 2 3 1 11
LARP4B WILD-TYPE 83 64 42 54 36

Figure S49.  Get High-res Image Gene #6: 'LARP4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S61.  Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HLA-B MUTATED 2 24 2 0
HLA-B WILD-TYPE 202 113 45 3

Figure S50.  Get High-res Image Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0041

Table S62.  Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HLA-B MUTATED 1 11 8 1 1
HLA-B WILD-TYPE 38 85 36 87 79

Figure S51.  Get High-res Image Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HLA-B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.034

Table S63.  Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HLA-B MUTATED 3 10 5 0 6
HLA-B WILD-TYPE 23 69 68 82 52

Figure S52.  Get High-res Image Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HLA-B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00265 (Fisher's exact test), Q value = 0.027

Table S64.  Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HLA-B MUTATED 7 10 6 1
HLA-B WILD-TYPE 120 41 65 68

Figure S53.  Get High-res Image Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0034 (Fisher's exact test), Q value = 0.031

Table S65.  Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HLA-B MUTATED 1 4 14 5 3
HLA-B WILD-TYPE 83 81 71 64 44

Figure S54.  Get High-res Image Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HLA-B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00379 (Fisher's exact test), Q value = 0.033

Table S66.  Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HLA-B MUTATED 7 4 3 13
HLA-B WILD-TYPE 88 70 118 67

Figure S55.  Get High-res Image Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.11

Table S67.  Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HLA-B MUTATED 3 11 6 5 2 1
HLA-B WILD-TYPE 49 53 66 99 38 58

Figure S56.  Get High-res Image Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0441 (Fisher's exact test), Q value = 0.13

Table S68.  Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HLA-B MUTATED 22 2 4
HLA-B WILD-TYPE 195 73 95

Figure S57.  Get High-res Image Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.16

Table S69.  Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HLA-B MUTATED 6 3 8
HLA-B WILD-TYPE 115 105 64
'HLA-B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0934 (Fisher's exact test), Q value = 0.21

Table S70.  Gene #7: 'HLA-B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HLA-B MUTATED 7 2 4 0 4
HLA-B WILD-TYPE 81 64 41 55 43
'RHOA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00669 (Fisher's exact test), Q value = 0.045

Table S71.  Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RHOA MUTATED 4 14 1 0
RHOA WILD-TYPE 200 123 46 3

Figure S58.  Get High-res Image Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RHOA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S72.  Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RHOA MUTATED 1 6 3 2 5
RHOA WILD-TYPE 38 90 41 86 75
'RHOA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RHOA MUTATED 1 4 4 4 3
RHOA WILD-TYPE 25 75 69 78 55
'RHOA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 0.82

Table S74.  Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RHOA MUTATED 5 3 5 3
RHOA WILD-TYPE 122 48 66 66
'RHOA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.45

Table S75.  Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RHOA MUTATED 1 5 4 3 4
RHOA WILD-TYPE 83 80 81 66 43
'RHOA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.29

Table S76.  Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RHOA MUTATED 5 6 2 4
RHOA WILD-TYPE 90 68 119 76
'RHOA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S77.  Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RHOA MUTATED 3 2 3 10 1 0
RHOA WILD-TYPE 49 62 69 94 39 59
'RHOA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0829 (Fisher's exact test), Q value = 0.19

Table S78.  Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RHOA MUTATED 13 5 1
RHOA WILD-TYPE 204 70 98
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 0.97

Table S79.  Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RHOA MUTATED 5 5 4
RHOA WILD-TYPE 116 103 68
'RHOA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.34

Table S80.  Gene #8: 'RHOA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RHOA MUTATED 5 5 3 0 1
RHOA WILD-TYPE 83 61 42 55 46
'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.56

Table S81.  Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SMAD4 MUTATED 13 9 6 0
SMAD4 WILD-TYPE 191 128 41 3
'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.66

Table S82.  Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SMAD4 MUTATED 5 7 3 4 5
SMAD4 WILD-TYPE 34 89 41 84 75
'SMAD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.44

Table S83.  Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SMAD4 MUTATED 1 8 2 8 3
SMAD4 WILD-TYPE 25 71 71 74 55
'SMAD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0938 (Fisher's exact test), Q value = 0.21

Table S84.  Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SMAD4 MUTATED 4 5 5 8
SMAD4 WILD-TYPE 123 46 66 61
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.64

Table S85.  Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SMAD4 MUTATED 4 4 8 7 3
SMAD4 WILD-TYPE 80 81 77 62 44
'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.749 (Fisher's exact test), Q value = 0.82

Table S86.  Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SMAD4 MUTATED 8 4 7 7
SMAD4 WILD-TYPE 87 70 114 73
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.13

Table S87.  Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SMAD4 MUTATED 6 3 8 10 0 1
SMAD4 WILD-TYPE 46 61 64 94 40 58

Figure S59.  Get High-res Image Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.73

Table S88.  Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SMAD4 MUTATED 17 6 5
SMAD4 WILD-TYPE 200 69 94
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.5

Table S89.  Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SMAD4 MUTATED 11 6 3
SMAD4 WILD-TYPE 110 102 69
'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S90.  Gene #9: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SMAD4 MUTATED 5 5 1 3 6
SMAD4 WILD-TYPE 83 61 44 52 41
'B2M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0058

Table S91.  Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
B2M MUTATED 1 14 3 0
B2M WILD-TYPE 203 123 44 3

Figure S60.  Get High-res Image Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'B2M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00106 (Fisher's exact test), Q value = 0.016

Table S92.  Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
B2M MUTATED 2 11 3 0 1
B2M WILD-TYPE 37 85 41 88 79

Figure S61.  Get High-res Image Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'B2M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.5

Table S93.  Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
B2M MUTATED 1 5 3 1 4
B2M WILD-TYPE 25 74 70 81 54
'B2M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.032 (Fisher's exact test), Q value = 0.11

Table S94.  Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
B2M MUTATED 3 6 4 1
B2M WILD-TYPE 124 45 67 68

Figure S62.  Get High-res Image Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.018

Table S95.  Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
B2M MUTATED 0 1 10 3 3
B2M WILD-TYPE 84 84 75 66 44

Figure S63.  Get High-res Image Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'B2M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.08

Table S96.  Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
B2M MUTATED 4 2 2 9
B2M WILD-TYPE 91 72 119 71

Figure S64.  Get High-res Image Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.086

Table S97.  Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
B2M MUTATED 7 4 2 3 2 0
B2M WILD-TYPE 45 60 70 101 38 59

Figure S65.  Get High-res Image Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'B2M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.057

Table S98.  Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
B2M MUTATED 15 3 0
B2M WILD-TYPE 202 72 99

Figure S66.  Get High-res Image Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S99.  Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
B2M MUTATED 7 3 7
B2M WILD-TYPE 114 105 65
'B2M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.082

Table S100.  Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
B2M MUTATED 5 2 3 0 7
B2M WILD-TYPE 83 64 42 55 40

Figure S67.  Get High-res Image Gene #10: 'B2M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00084 (Fisher's exact test), Q value = 0.014

Table S101.  Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C7ORF50 MUTATED 1 11 0 0
C7ORF50 WILD-TYPE 203 126 47 3

Figure S68.  Get High-res Image Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C7ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S102.  Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C7ORF50 MUTATED 1 10 0 0 0
C7ORF50 WILD-TYPE 38 86 44 88 80

Figure S69.  Get High-res Image Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.52

Table S103.  Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C7ORF50 MUTATED 2 3 3 1 1
C7ORF50 WILD-TYPE 24 76 70 81 57
'C7ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00784 (Fisher's exact test), Q value = 0.049

Table S104.  Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C7ORF50 MUTATED 2 6 1 1
C7ORF50 WILD-TYPE 125 45 70 68

Figure S70.  Get High-res Image Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S105.  Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C7ORF50 MUTATED 1 1 5 2 2
C7ORF50 WILD-TYPE 83 84 80 67 45
'C7ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.091

Table S106.  Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C7ORF50 MUTATED 4 2 0 5
C7ORF50 WILD-TYPE 91 72 121 75

Figure S71.  Get High-res Image Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.4

Table S107.  Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C7ORF50 MUTATED 4 3 2 1 1 1
C7ORF50 WILD-TYPE 48 61 70 103 39 58
'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S108.  Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C7ORF50 MUTATED 9 2 1
C7ORF50 WILD-TYPE 208 73 98
'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.11

Table S109.  Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C7ORF50 MUTATED 4 1 6
C7ORF50 WILD-TYPE 117 107 66

Figure S72.  Get High-res Image Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C7ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00963 (Fisher's exact test), Q value = 0.056

Table S110.  Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C7ORF50 MUTATED 2 1 2 0 6
C7ORF50 WILD-TYPE 86 65 43 55 41

Figure S73.  Get High-res Image Gene #11: 'C7ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S111.  Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MLL4 MUTATED 3 33 8 0
MLL4 WILD-TYPE 201 104 39 3

Figure S74.  Get High-res Image Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S112.  Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MLL4 MUTATED 3 26 6 1 2
MLL4 WILD-TYPE 36 70 38 87 78

Figure S75.  Get High-res Image Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.092

Table S113.  Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MLL4 MUTATED 2 13 12 3 10
MLL4 WILD-TYPE 24 66 61 79 48

Figure S76.  Get High-res Image Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.0091

Table S114.  Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MLL4 MUTATED 10 16 9 5
MLL4 WILD-TYPE 117 35 62 64

Figure S77.  Get High-res Image Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S115.  Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MLL4 MUTATED 0 8 22 6 7
MLL4 WILD-TYPE 84 77 63 63 40

Figure S78.  Get High-res Image Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S116.  Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MLL4 MUTATED 10 5 3 25
MLL4 WILD-TYPE 85 69 118 55

Figure S79.  Get High-res Image Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.005

Table S117.  Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MLL4 MUTATED 11 13 11 7 3 0
MLL4 WILD-TYPE 41 51 61 97 37 59

Figure S80.  Get High-res Image Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00067 (Fisher's exact test), Q value = 0.013

Table S118.  Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MLL4 MUTATED 37 3 5
MLL4 WILD-TYPE 180 72 94

Figure S81.  Get High-res Image Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.11

Table S119.  Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MLL4 MUTATED 14 6 13
MLL4 WILD-TYPE 107 102 59

Figure S82.  Get High-res Image Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MLL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S120.  Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MLL4 MUTATED 13 1 7 1 11
MLL4 WILD-TYPE 75 65 38 54 36

Figure S83.  Get High-res Image Gene #12: 'MLL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S121.  Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTEN MUTATED 10 16 3 0
PTEN WILD-TYPE 194 121 44 3
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00151 (Fisher's exact test), Q value = 0.02

Table S122.  Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTEN MUTATED 3 8 9 3 1
PTEN WILD-TYPE 36 88 35 85 79

Figure S84.  Get High-res Image Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0218 (Fisher's exact test), Q value = 0.089

Table S123.  Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTEN MUTATED 0 9 7 1 6
PTEN WILD-TYPE 26 70 66 81 52

Figure S85.  Get High-res Image Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 0.16

Table S124.  Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTEN MUTATED 10 7 5 1
PTEN WILD-TYPE 117 44 66 68
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S125.  Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTEN MUTATED 4 4 11 6 3
PTEN WILD-TYPE 80 81 74 63 44
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.78

Table S126.  Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTEN MUTATED 8 4 8 8
PTEN WILD-TYPE 87 70 113 72
'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.088

Table S127.  Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTEN MUTATED 4 9 10 5 1 1
PTEN WILD-TYPE 48 55 62 99 39 58

Figure S86.  Get High-res Image Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.086

Table S128.  Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTEN MUTATED 24 3 3
PTEN WILD-TYPE 193 72 96

Figure S87.  Get High-res Image Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S129.  Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTEN MUTATED 13 4 7
PTEN WILD-TYPE 108 104 65
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S130.  Gene #13: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTEN MUTATED 12 2 4 2 4
PTEN WILD-TYPE 76 64 41 53 43
'CDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0044

Table S131.  Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDH1 MUTATED 5 18 8 0
CDH1 WILD-TYPE 199 119 39 3

Figure S88.  Get High-res Image Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00539 (Fisher's exact test), Q value = 0.04

Table S132.  Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDH1 MUTATED 5 7 1 2 13
CDH1 WILD-TYPE 34 89 43 86 67

Figure S89.  Get High-res Image Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.19

Table S133.  Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDH1 MUTATED 0 4 7 13 5
CDH1 WILD-TYPE 26 75 66 69 53
'CDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.24

Table S134.  Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDH1 MUTATED 7 5 6 11
CDH1 WILD-TYPE 120 46 65 58
'CDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.0089

Table S135.  Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDH1 MUTATED 1 15 4 3 6
CDH1 WILD-TYPE 83 70 81 66 41

Figure S90.  Get High-res Image Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S136.  Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDH1 MUTATED 6 15 2 6
CDH1 WILD-TYPE 89 59 119 74

Figure S91.  Get High-res Image Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.09

Table S137.  Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDH1 MUTATED 3 7 3 16 2 1
CDH1 WILD-TYPE 49 57 69 88 38 58

Figure S92.  Get High-res Image Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0037

Table S138.  Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDH1 MUTATED 15 15 2
CDH1 WILD-TYPE 202 60 97

Figure S93.  Get High-res Image Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S139.  Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDH1 MUTATED 6 13 7
CDH1 WILD-TYPE 115 95 65
'CDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0468 (Fisher's exact test), Q value = 0.14

Table S140.  Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDH1 MUTATED 8 11 4 1 2
CDH1 WILD-TYPE 80 55 41 54 45

Figure S94.  Get High-res Image Gene #14: 'CDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.0092

Table S141.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GNG12 MUTATED 0 10 2 0
GNG12 WILD-TYPE 204 127 45 3

Figure S95.  Get High-res Image Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GNG12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.19

Table S142.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GNG12 MUTATED 0 5 2 0 1
GNG12 WILD-TYPE 39 91 42 88 79
'GNG12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S143.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GNG12 MUTATED 1 3 1 1 5
GNG12 WILD-TYPE 25 76 72 81 53
'GNG12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S144.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GNG12 MUTATED 2 6 1 2
GNG12 WILD-TYPE 125 45 70 67

Figure S96.  Get High-res Image Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00648 (Fisher's exact test), Q value = 0.044

Table S145.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GNG12 MUTATED 0 2 7 0 2
GNG12 WILD-TYPE 84 83 78 69 45

Figure S97.  Get High-res Image Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0594 (Fisher's exact test), Q value = 0.16

Table S146.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GNG12 MUTATED 2 2 1 6
GNG12 WILD-TYPE 93 72 120 74
'GNG12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00019 (Fisher's exact test), Q value = 0.0058

Table S147.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GNG12 MUTATED 1 8 3 0 0 0
GNG12 WILD-TYPE 51 56 69 104 40 59

Figure S98.  Get High-res Image Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00525 (Fisher's exact test), Q value = 0.04

Table S148.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GNG12 MUTATED 12 0 0
GNG12 WILD-TYPE 205 75 99

Figure S99.  Get High-res Image Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.12

Table S149.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GNG12 MUTATED 4 0 4
GNG12 WILD-TYPE 117 108 68

Figure S100.  Get High-res Image Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GNG12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.22

Table S150.  Gene #15: 'GNG12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GNG12 MUTATED 3 0 2 0 3
GNG12 WILD-TYPE 85 66 43 55 44
'PGM5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S151.  Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PGM5 MUTATED 1 33 4 0
PGM5 WILD-TYPE 203 104 43 3

Figure S101.  Get High-res Image Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PGM5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S152.  Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PGM5 MUTATED 1 24 3 0 2
PGM5 WILD-TYPE 38 72 41 88 78

Figure S102.  Get High-res Image Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PGM5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.0097

Table S153.  Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PGM5 MUTATED 1 11 10 0 9
PGM5 WILD-TYPE 25 68 63 82 49

Figure S103.  Get High-res Image Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PGM5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S154.  Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PGM5 MUTATED 4 17 7 3
PGM5 WILD-TYPE 123 34 64 66

Figure S104.  Get High-res Image Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0037

Table S155.  Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PGM5 MUTATED 1 5 19 6 7
PGM5 WILD-TYPE 83 80 66 63 40

Figure S105.  Get High-res Image Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PGM5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S156.  Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PGM5 MUTATED 11 5 1 21
PGM5 WILD-TYPE 84 69 120 59

Figure S106.  Get High-res Image Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S157.  Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PGM5 MUTATED 14 13 7 3 1 1
PGM5 WILD-TYPE 38 51 65 101 39 58

Figure S107.  Get High-res Image Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.011

Table S158.  Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PGM5 MUTATED 33 2 4
PGM5 WILD-TYPE 184 73 95

Figure S108.  Get High-res Image Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.063

Table S159.  Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PGM5 MUTATED 16 3 7
PGM5 WILD-TYPE 105 105 65

Figure S109.  Get High-res Image Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PGM5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0037

Table S160.  Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PGM5 MUTATED 9 2 3 0 12
PGM5 WILD-TYPE 79 64 42 55 35

Figure S110.  Get High-res Image Gene #16: 'PGM5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CBWD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S161.  Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CBWD1 MUTATED 0 17 4 0
CBWD1 WILD-TYPE 204 120 43 3

Figure S111.  Get High-res Image Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CBWD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S162.  Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CBWD1 MUTATED 1 13 3 0 0
CBWD1 WILD-TYPE 38 83 41 88 80

Figure S112.  Get High-res Image Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CBWD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.12

Table S163.  Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CBWD1 MUTATED 0 7 4 1 7
CBWD1 WILD-TYPE 26 72 69 81 51

Figure S113.  Get High-res Image Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CBWD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00156 (Fisher's exact test), Q value = 0.02

Table S164.  Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CBWD1 MUTATED 4 9 5 1
CBWD1 WILD-TYPE 123 42 66 68

Figure S114.  Get High-res Image Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CBWD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00131 (Fisher's exact test), Q value = 0.018

Table S165.  Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CBWD1 MUTATED 0 3 11 2 4
CBWD1 WILD-TYPE 84 82 74 67 43

Figure S115.  Get High-res Image Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CBWD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S166.  Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CBWD1 MUTATED 5 3 0 12
CBWD1 WILD-TYPE 90 71 121 68

Figure S116.  Get High-res Image Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CBWD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.058

Table S167.  Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CBWD1 MUTATED 3 9 4 5 0 0
CBWD1 WILD-TYPE 49 55 68 99 40 59

Figure S117.  Get High-res Image Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CBWD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00287 (Fisher's exact test), Q value = 0.029

Table S168.  Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CBWD1 MUTATED 19 1 1
CBWD1 WILD-TYPE 198 74 98

Figure S118.  Get High-res Image Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CBWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.47

Table S169.  Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CBWD1 MUTATED 5 4 6
CBWD1 WILD-TYPE 116 104 66
'CBWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.12

Table S170.  Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CBWD1 MUTATED 8 1 4 0 2
CBWD1 WILD-TYPE 80 65 41 55 45

Figure S119.  Get High-res Image Gene #17: 'CBWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S171.  Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZBTB20 MUTATED 1 33 3 0
ZBTB20 WILD-TYPE 203 104 44 3

Figure S120.  Get High-res Image Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S172.  Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZBTB20 MUTATED 0 23 1 0 4
ZBTB20 WILD-TYPE 39 73 43 88 76

Figure S121.  Get High-res Image Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.6

Table S173.  Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZBTB20 MUTATED 2 9 9 4 6
ZBTB20 WILD-TYPE 24 70 64 78 52
'ZBTB20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S174.  Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZBTB20 MUTATED 4 15 6 5
ZBTB20 WILD-TYPE 123 36 65 64

Figure S122.  Get High-res Image Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S175.  Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZBTB20 MUTATED 0 6 19 5 6
ZBTB20 WILD-TYPE 84 79 66 64 41

Figure S123.  Get High-res Image Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S176.  Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZBTB20 MUTATED 8 4 3 21
ZBTB20 WILD-TYPE 87 70 118 59

Figure S124.  Get High-res Image Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S177.  Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZBTB20 MUTATED 12 12 8 3 2 0
ZBTB20 WILD-TYPE 40 52 64 101 38 59

Figure S125.  Get High-res Image Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00293 (Fisher's exact test), Q value = 0.029

Table S178.  Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZBTB20 MUTATED 30 4 3
ZBTB20 WILD-TYPE 187 71 96

Figure S126.  Get High-res Image Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.14

Table S179.  Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZBTB20 MUTATED 10 4 10
ZBTB20 WILD-TYPE 111 104 62

Figure S127.  Get High-res Image Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZBTB20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S180.  Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZBTB20 MUTATED 9 0 5 0 10
ZBTB20 WILD-TYPE 79 66 40 55 37

Figure S128.  Get High-res Image Gene #18: 'ZBTB20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARID4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.013

Table S181.  Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARID4A MUTATED 3 16 2 0
ARID4A WILD-TYPE 201 121 45 3

Figure S129.  Get High-res Image Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00597 (Fisher's exact test), Q value = 0.043

Table S182.  Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARID4A MUTATED 2 11 2 0 3
ARID4A WILD-TYPE 37 85 42 88 77

Figure S130.  Get High-res Image Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.71

Table S183.  Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARID4A MUTATED 2 5 7 3 3
ARID4A WILD-TYPE 24 74 66 79 55
'ARID4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S184.  Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARID4A MUTATED 6 7 5 2
ARID4A WILD-TYPE 121 44 66 67
'ARID4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.13

Table S185.  Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARID4A MUTATED 2 4 11 2 2
ARID4A WILD-TYPE 82 81 74 67 45

Figure S131.  Get High-res Image Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARID4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S186.  Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARID4A MUTATED 5 5 3 8
ARID4A WILD-TYPE 90 69 118 72
'ARID4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.13

Table S187.  Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARID4A MUTATED 6 7 1 6 1 1
ARID4A WILD-TYPE 46 57 71 98 39 58

Figure S132.  Get High-res Image Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.54

Table S188.  Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARID4A MUTATED 14 5 3
ARID4A WILD-TYPE 203 70 96
'ARID4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.17

Table S189.  Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARID4A MUTATED 6 2 7
ARID4A WILD-TYPE 115 106 65
'ARID4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S190.  Gene #19: 'ARID4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARID4A MUTATED 5 2 4 0 4
ARID4A WILD-TYPE 83 64 41 55 43
'MLL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S191.  Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MLL2 MUTATED 11 47 9 0
MLL2 WILD-TYPE 193 90 38 3

Figure S133.  Get High-res Image Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S192.  Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MLL2 MUTATED 4 31 11 2 4
MLL2 WILD-TYPE 35 65 33 86 76

Figure S134.  Get High-res Image Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0075

Table S193.  Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MLL2 MUTATED 3 19 17 3 15
MLL2 WILD-TYPE 23 60 56 79 43

Figure S135.  Get High-res Image Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S194.  Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MLL2 MUTATED 17 25 10 5
MLL2 WILD-TYPE 110 26 61 64

Figure S136.  Get High-res Image Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S195.  Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MLL2 MUTATED 5 8 29 14 8
MLL2 WILD-TYPE 79 77 56 55 39

Figure S137.  Get High-res Image Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S196.  Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MLL2 MUTATED 18 9 10 27
MLL2 WILD-TYPE 77 65 111 53

Figure S138.  Get High-res Image Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S197.  Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MLL2 MUTATED 13 20 18 7 5 4
MLL2 WILD-TYPE 39 44 54 97 35 55

Figure S139.  Get High-res Image Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0041

Table S198.  Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MLL2 MUTATED 53 6 8
MLL2 WILD-TYPE 164 69 91

Figure S140.  Get High-res Image Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0073

Table S199.  Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MLL2 MUTATED 22 5 17
MLL2 WILD-TYPE 99 103 55

Figure S141.  Get High-res Image Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MLL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S200.  Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MLL2 MUTATED 16 3 9 0 16
MLL2 WILD-TYPE 72 63 36 55 31

Figure S142.  Get High-res Image Gene #20: 'MLL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S201.  Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FBXW7 MUTATED 4 26 2 0
FBXW7 WILD-TYPE 200 111 45 3

Figure S143.  Get High-res Image Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXW7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00185 (Fisher's exact test), Q value = 0.022

Table S202.  Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FBXW7 MUTATED 1 18 3 4 3
FBXW7 WILD-TYPE 38 78 41 84 77

Figure S144.  Get High-res Image Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FBXW7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.52

Table S203.  Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FBXW7 MUTATED 1 10 8 4 5
FBXW7 WILD-TYPE 25 69 65 78 53
'FBXW7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.072

Table S204.  Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FBXW7 MUTATED 5 9 9 5
FBXW7 WILD-TYPE 122 42 62 64

Figure S145.  Get High-res Image Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.012

Table S205.  Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FBXW7 MUTATED 3 5 16 1 3
FBXW7 WILD-TYPE 81 80 69 68 44

Figure S146.  Get High-res Image Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBXW7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00506 (Fisher's exact test), Q value = 0.039

Table S206.  Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FBXW7 MUTATED 4 5 5 14
FBXW7 WILD-TYPE 91 69 116 66

Figure S147.  Get High-res Image Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.42

Table S207.  Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FBXW7 MUTATED 8 6 7 5 3 3
FBXW7 WILD-TYPE 44 58 65 99 37 56
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 0.85

Table S208.  Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FBXW7 MUTATED 20 5 7
FBXW7 WILD-TYPE 197 70 92
'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.072

Table S209.  Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FBXW7 MUTATED 14 3 9
FBXW7 WILD-TYPE 107 105 63

Figure S148.  Get High-res Image Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FBXW7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S210.  Gene #21: 'FBXW7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FBXW7 MUTATED 10 2 4 3 7
FBXW7 WILD-TYPE 78 64 41 52 40
'MBD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 0.022

Table S211.  Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MBD6 MUTATED 4 16 3 0
MBD6 WILD-TYPE 200 121 44 3

Figure S149.  Get High-res Image Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MBD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 0.097

Table S212.  Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MBD6 MUTATED 2 11 2 2 1
MBD6 WILD-TYPE 37 85 42 86 79

Figure S150.  Get High-res Image Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MBD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00125 (Fisher's exact test), Q value = 0.018

Table S213.  Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MBD6 MUTATED 0 10 3 0 6
MBD6 WILD-TYPE 26 69 70 82 52

Figure S151.  Get High-res Image Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MBD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S214.  Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MBD6 MUTATED 3 9 7 0
MBD6 WILD-TYPE 124 42 64 69

Figure S152.  Get High-res Image Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S215.  Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MBD6 MUTATED 0 2 14 1 5
MBD6 WILD-TYPE 84 83 71 68 42

Figure S153.  Get High-res Image Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MBD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S216.  Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MBD6 MUTATED 4 1 1 16
MBD6 WILD-TYPE 91 73 120 64

Figure S154.  Get High-res Image Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00572 (Fisher's exact test), Q value = 0.042

Table S217.  Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MBD6 MUTATED 6 9 4 3 2 0
MBD6 WILD-TYPE 46 55 68 101 38 59

Figure S155.  Get High-res Image Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MBD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0683 (Fisher's exact test), Q value = 0.17

Table S218.  Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MBD6 MUTATED 19 2 3
MBD6 WILD-TYPE 198 73 96
'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.24

Table S219.  Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MBD6 MUTATED 6 2 6
MBD6 WILD-TYPE 115 106 66
'MBD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00434 (Fisher's exact test), Q value = 0.035

Table S220.  Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MBD6 MUTATED 3 1 3 0 7
MBD6 WILD-TYPE 85 65 42 55 40

Figure S156.  Get High-res Image Gene #22: 'MBD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.26

Table S221.  Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MUC6 MUTATED 18 21 6 1
MUC6 WILD-TYPE 186 116 41 2
'MUC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 0.89

Table S222.  Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MUC6 MUTATED 4 14 5 10 7
MUC6 WILD-TYPE 35 82 39 78 73
'MUC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S223.  Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MUC6 MUTATED 3 12 10 3 6
MUC6 WILD-TYPE 23 67 63 79 52
'MUC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00154 (Fisher's exact test), Q value = 0.02

Table S224.  Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MUC6 MUTATED 11 13 8 2
MUC6 WILD-TYPE 116 38 63 67

Figure S157.  Get High-res Image Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.11

Table S225.  Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MUC6 MUTATED 7 6 19 7 6
MUC6 WILD-TYPE 77 79 66 62 41

Figure S158.  Get High-res Image Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MUC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0374 (Fisher's exact test), Q value = 0.12

Table S226.  Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MUC6 MUTATED 13 4 12 16
MUC6 WILD-TYPE 82 70 109 64

Figure S159.  Get High-res Image Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MUC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.45

Table S227.  Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MUC6 MUTATED 7 11 10 7 3 7
MUC6 WILD-TYPE 45 53 62 97 37 52
'MUC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.22

Table S228.  Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MUC6 MUTATED 31 4 10
MUC6 WILD-TYPE 186 71 89
'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.62

Table S229.  Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MUC6 MUTATED 17 10 7
MUC6 WILD-TYPE 104 98 65
'MUC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.62

Table S230.  Gene #23: 'MUC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MUC6 MUTATED 10 4 5 8 7
MUC6 WILD-TYPE 78 62 40 47 40
'DDX17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0037 (Fisher's exact test), Q value = 0.033

Table S231.  Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DDX17 MUTATED 2 12 1 0
DDX17 WILD-TYPE 202 125 46 3

Figure S160.  Get High-res Image Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0036 (Fisher's exact test), Q value = 0.033

Table S232.  Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DDX17 MUTATED 0 7 4 0 1
DDX17 WILD-TYPE 39 89 40 88 79

Figure S161.  Get High-res Image Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDX17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S233.  Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DDX17 MUTATED 1 5 3 0 4
DDX17 WILD-TYPE 25 74 70 82 54
'DDX17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S234.  Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DDX17 MUTATED 3 6 3 1
DDX17 WILD-TYPE 124 45 68 68

Figure S162.  Get High-res Image Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S235.  Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DDX17 MUTATED 0 4 5 4 1
DDX17 WILD-TYPE 84 81 80 65 46
'DDX17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.0078

Table S236.  Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DDX17 MUTATED 4 1 0 9
DDX17 WILD-TYPE 91 73 121 71

Figure S163.  Get High-res Image Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.12

Table S237.  Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DDX17 MUTATED 2 7 3 3 0 0
DDX17 WILD-TYPE 50 57 69 101 40 59

Figure S164.  Get High-res Image Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0359 (Fisher's exact test), Q value = 0.12

Table S238.  Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DDX17 MUTATED 13 0 2
DDX17 WILD-TYPE 204 75 97

Figure S165.  Get High-res Image Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S239.  Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DDX17 MUTATED 4 2 4
DDX17 WILD-TYPE 117 106 68
'DDX17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 0.37

Table S240.  Gene #24: 'DDX17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DDX17 MUTATED 4 0 2 1 3
DDX17 WILD-TYPE 84 66 43 54 44
'HOXD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00148 (Fisher's exact test), Q value = 0.02

Table S241.  Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HOXD8 MUTATED 1 11 1 0
HOXD8 WILD-TYPE 203 126 46 3

Figure S166.  Get High-res Image Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HOXD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00675 (Fisher's exact test), Q value = 0.045

Table S242.  Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HOXD8 MUTATED 0 8 1 0 1
HOXD8 WILD-TYPE 39 88 43 88 79

Figure S167.  Get High-res Image Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HOXD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S243.  Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HOXD8 MUTATED 1 4 3 0 3
HOXD8 WILD-TYPE 25 75 70 82 55
'HOXD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00808 (Fisher's exact test), Q value = 0.05

Table S244.  Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HOXD8 MUTATED 3 6 2 0
HOXD8 WILD-TYPE 124 45 69 69

Figure S168.  Get High-res Image Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HOXD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00818 (Fisher's exact test), Q value = 0.05

Table S245.  Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HOXD8 MUTATED 0 2 8 1 1
HOXD8 WILD-TYPE 84 83 77 68 46

Figure S169.  Get High-res Image Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HOXD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S246.  Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HOXD8 MUTATED 3 1 2 6
HOXD8 WILD-TYPE 92 73 119 74
'HOXD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0051 (Fisher's exact test), Q value = 0.039

Table S247.  Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HOXD8 MUTATED 3 6 3 0 1 0
HOXD8 WILD-TYPE 49 58 69 104 39 59

Figure S170.  Get High-res Image Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0911 (Fisher's exact test), Q value = 0.2

Table S248.  Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HOXD8 MUTATED 11 0 2
HOXD8 WILD-TYPE 206 75 97
'HOXD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.1

Table S249.  Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HOXD8 MUTATED 3 1 6
HOXD8 WILD-TYPE 118 107 66

Figure S171.  Get High-res Image Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HOXD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00635 (Fisher's exact test), Q value = 0.044

Table S250.  Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HOXD8 MUTATED 2 0 4 0 4
HOXD8 WILD-TYPE 86 66 41 55 43

Figure S172.  Get High-res Image Gene #25: 'HOXD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S251.  Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZBTB7C MUTATED 1 15 1 0
ZBTB7C WILD-TYPE 203 122 46 3

Figure S173.  Get High-res Image Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB7C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S252.  Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZBTB7C MUTATED 0 13 3 0 0
ZBTB7C WILD-TYPE 39 83 41 88 80

Figure S174.  Get High-res Image Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB7C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0758 (Fisher's exact test), Q value = 0.18

Table S253.  Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZBTB7C MUTATED 1 3 6 0 2
ZBTB7C WILD-TYPE 25 76 67 82 56
'ZBTB7C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00384 (Fisher's exact test), Q value = 0.033

Table S254.  Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZBTB7C MUTATED 2 7 2 1
ZBTB7C WILD-TYPE 125 44 69 68

Figure S175.  Get High-res Image Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.18

Table S255.  Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZBTB7C MUTATED 0 3 5 3 4
ZBTB7C WILD-TYPE 84 82 80 66 43
'ZBTB7C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00051 (Fisher's exact test), Q value = 0.011

Table S256.  Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZBTB7C MUTATED 6 1 0 8
ZBTB7C WILD-TYPE 89 73 121 72

Figure S176.  Get High-res Image Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.083

Table S257.  Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZBTB7C MUTATED 6 4 2 2 3 0
ZBTB7C WILD-TYPE 46 60 70 102 37 59

Figure S177.  Get High-res Image Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S258.  Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZBTB7C MUTATED 14 1 2
ZBTB7C WILD-TYPE 203 74 97
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.21

Table S259.  Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZBTB7C MUTATED 8 2 6
ZBTB7C WILD-TYPE 113 106 66
'ZBTB7C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00038 (Fisher's exact test), Q value = 0.0089

Table S260.  Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZBTB7C MUTATED 4 1 2 0 9
ZBTB7C WILD-TYPE 84 65 43 55 38

Figure S178.  Get High-res Image Gene #26: 'ZBTB7C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00608 (Fisher's exact test), Q value = 0.043

Table S261.  Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KLF3 MUTATED 3 12 4 0
KLF3 WILD-TYPE 201 125 43 3

Figure S179.  Get High-res Image Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.078

Table S262.  Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KLF3 MUTATED 1 11 3 2 1
KLF3 WILD-TYPE 38 85 41 86 79

Figure S180.  Get High-res Image Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S263.  Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KLF3 MUTATED 0 3 3 2 7
KLF3 WILD-TYPE 26 76 70 80 51
'KLF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0853 (Fisher's exact test), Q value = 0.2

Table S264.  Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KLF3 MUTATED 3 6 3 3
KLF3 WILD-TYPE 124 45 68 66
'KLF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S265.  Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KLF3 MUTATED 2 7 7 2 1
KLF3 WILD-TYPE 82 78 78 67 46
'KLF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00339 (Fisher's exact test), Q value = 0.031

Table S266.  Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KLF3 MUTATED 2 5 2 10
KLF3 WILD-TYPE 93 69 119 70

Figure S181.  Get High-res Image Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KLF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S267.  Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KLF3 MUTATED 2 4 5 7 1 0
KLF3 WILD-TYPE 50 60 67 97 39 59
'KLF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.77

Table S268.  Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KLF3 MUTATED 12 2 5
KLF3 WILD-TYPE 205 73 94
'KLF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 0.94

Table S269.  Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KLF3 MUTATED 7 6 5
KLF3 WILD-TYPE 114 102 67
'KLF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S270.  Gene #27: 'KLF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KLF3 MUTATED 8 3 2 1 4
KLF3 WILD-TYPE 80 63 43 54 43
'TENC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00246 (Fisher's exact test), Q value = 0.026

Table S271.  Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TENC1 MUTATED 3 12 5 0
TENC1 WILD-TYPE 201 125 42 3

Figure S182.  Get High-res Image Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TENC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.2

Table S272.  Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TENC1 MUTATED 2 9 2 2 1
TENC1 WILD-TYPE 37 87 42 86 79
'TENC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.34

Table S273.  Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TENC1 MUTATED 2 6 6 1 3
TENC1 WILD-TYPE 24 73 67 81 55
'TENC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00546 (Fisher's exact test), Q value = 0.041

Table S274.  Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TENC1 MUTATED 4 8 5 1
TENC1 WILD-TYPE 123 43 66 68

Figure S183.  Get High-res Image Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TENC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.13

Table S275.  Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TENC1 MUTATED 2 4 10 1 3
TENC1 WILD-TYPE 82 81 75 68 44

Figure S184.  Get High-res Image Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TENC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00061 (Fisher's exact test), Q value = 0.012

Table S276.  Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TENC1 MUTATED 3 5 1 11
TENC1 WILD-TYPE 92 69 120 69

Figure S185.  Get High-res Image Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TENC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 0.91

Table S277.  Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TENC1 MUTATED 3 5 3 4 2 2
TENC1 WILD-TYPE 49 59 69 100 38 57
'TENC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.43

Table S278.  Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TENC1 MUTATED 13 1 5
TENC1 WILD-TYPE 204 74 94
'TENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S279.  Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TENC1 MUTATED 4 2 6
TENC1 WILD-TYPE 117 106 66
'TENC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 0.16

Table S280.  Gene #28: 'TENC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TENC1 MUTATED 2 2 4 0 4
TENC1 WILD-TYPE 86 64 41 55 43
'MTG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00204 (Fisher's exact test), Q value = 0.023

Table S281.  Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MTG1 MUTATED 0 8 0 0
MTG1 WILD-TYPE 204 129 47 3

Figure S186.  Get High-res Image Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.13

Table S282.  Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MTG1 MUTATED 1 5 1 0 0
MTG1 WILD-TYPE 38 91 43 88 80

Figure S187.  Get High-res Image Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.46

Table S283.  Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MTG1 MUTATED 0 3 3 0 2
MTG1 WILD-TYPE 26 76 70 82 56
'MTG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0543 (Fisher's exact test), Q value = 0.15

Table S284.  Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MTG1 MUTATED 1 4 2 1
MTG1 WILD-TYPE 126 47 69 68
'MTG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S285.  Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MTG1 MUTATED 0 3 3 1 1
MTG1 WILD-TYPE 84 82 82 68 46
'MTG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.068

Table S286.  Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MTG1 MUTATED 1 2 0 5
MTG1 WILD-TYPE 94 72 121 75

Figure S188.  Get High-res Image Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MTG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S287.  Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MTG1 MUTATED 2 3 2 1 1 0
MTG1 WILD-TYPE 50 61 70 103 39 59
'MTG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.94

Table S288.  Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MTG1 MUTATED 6 1 2
MTG1 WILD-TYPE 211 74 97
'MTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 0.68

Table S289.  Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MTG1 MUTATED 4 1 1
MTG1 WILD-TYPE 117 107 71
'MTG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0267 (Fisher's exact test), Q value = 0.1

Table S290.  Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MTG1 MUTATED 1 1 0 0 4
MTG1 WILD-TYPE 87 65 45 55 43

Figure S189.  Get High-res Image Gene #29: 'MTG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LARP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 0.14

Table S291.  Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LARP7 MUTATED 5 12 1 0
LARP7 WILD-TYPE 199 125 46 3

Figure S190.  Get High-res Image Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LARP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S292.  Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LARP7 MUTATED 1 9 1 2 2
LARP7 WILD-TYPE 38 87 43 86 78
'LARP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.54

Table S293.  Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LARP7 MUTATED 0 6 3 2 4
LARP7 WILD-TYPE 26 73 70 80 54
'LARP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00758 (Fisher's exact test), Q value = 0.049

Table S294.  Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LARP7 MUTATED 2 7 4 2
LARP7 WILD-TYPE 125 44 67 67

Figure S191.  Get High-res Image Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LARP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S295.  Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LARP7 MUTATED 3 3 8 2 1
LARP7 WILD-TYPE 81 82 77 67 46
'LARP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S296.  Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LARP7 MUTATED 4 2 3 8
LARP7 WILD-TYPE 91 72 118 72
'LARP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.55

Table S297.  Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LARP7 MUTATED 2 4 6 2 2 2
LARP7 WILD-TYPE 50 60 66 102 38 57
'LARP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.73

Table S298.  Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LARP7 MUTATED 12 2 4
LARP7 WILD-TYPE 205 73 95
'LARP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.53

Table S299.  Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LARP7 MUTATED 7 3 5
LARP7 WILD-TYPE 114 105 67
'LARP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.38

Table S300.  Gene #30: 'LARP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LARP7 MUTATED 5 1 1 3 5
LARP7 WILD-TYPE 83 65 44 52 42
'MVK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00759 (Fisher's exact test), Q value = 0.049

Table S301.  Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MVK MUTATED 2 11 2 0
MVK WILD-TYPE 202 126 45 3

Figure S192.  Get High-res Image Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MVK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S302.  Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MVK MUTATED 0 10 1 0 0
MVK WILD-TYPE 39 86 43 88 80

Figure S193.  Get High-res Image Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MVK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.085

Table S303.  Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MVK MUTATED 0 7 4 0 1
MVK WILD-TYPE 26 72 69 82 57

Figure S194.  Get High-res Image Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MVK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S304.  Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MVK MUTATED 1 9 2 0
MVK WILD-TYPE 126 42 69 69

Figure S195.  Get High-res Image Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00918 (Fisher's exact test), Q value = 0.054

Table S305.  Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MVK MUTATED 0 2 8 1 2
MVK WILD-TYPE 84 83 77 68 45

Figure S196.  Get High-res Image Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MVK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00614 (Fisher's exact test), Q value = 0.043

Table S306.  Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MVK MUTATED 3 1 1 8
MVK WILD-TYPE 92 73 120 72

Figure S197.  Get High-res Image Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MVK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.13

Table S307.  Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MVK MUTATED 4 4 5 1 1 0
MVK WILD-TYPE 48 60 67 103 39 59

Figure S198.  Get High-res Image Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MVK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S308.  Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MVK MUTATED 12 1 2
MVK WILD-TYPE 205 74 97
'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S309.  Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MVK MUTATED 3 2 2
MVK WILD-TYPE 118 106 70
'MVK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S310.  Gene #31: 'MVK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MVK MUTATED 2 1 1 0 3
MVK WILD-TYPE 86 65 44 55 44
'KIAA0406 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.014

Table S311.  Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA0406 MUTATED 4 17 2 0
KIAA0406 WILD-TYPE 200 120 45 3

Figure S199.  Get High-res Image Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0406 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00269 (Fisher's exact test), Q value = 0.028

Table S312.  Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA0406 MUTATED 2 10 5 2 0
KIAA0406 WILD-TYPE 37 86 39 86 80

Figure S200.  Get High-res Image Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0406 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.64

Table S313.  Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA0406 MUTATED 1 8 3 4 5
KIAA0406 WILD-TYPE 25 71 70 78 53
'KIAA0406 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.11

Table S314.  Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA0406 MUTATED 4 8 5 4
KIAA0406 WILD-TYPE 123 43 66 65

Figure S201.  Get High-res Image Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S315.  Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA0406 MUTATED 3 5 10 3 1
KIAA0406 WILD-TYPE 81 80 75 66 46
'KIAA0406 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 0.51

Table S316.  Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA0406 MUTATED 5 4 5 8
KIAA0406 WILD-TYPE 90 70 116 72
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.62

Table S317.  Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA0406 MUTATED 3 7 5 4 2 2
KIAA0406 WILD-TYPE 49 57 67 100 38 57
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S318.  Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA0406 MUTATED 16 4 3
KIAA0406 WILD-TYPE 201 71 96
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.15

Table S319.  Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA0406 MUTATED 8 2 7
KIAA0406 WILD-TYPE 113 106 65
'KIAA0406 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.6

Table S320.  Gene #32: 'KIAA0406 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA0406 MUTATED 6 2 2 2 5
KIAA0406 WILD-TYPE 82 64 43 53 42
'FRMD4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.075

Table S321.  Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FRMD4A MUTATED 5 14 1 0
FRMD4A WILD-TYPE 199 123 46 3

Figure S202.  Get High-res Image Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FRMD4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S322.  Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FRMD4A MUTATED 2 15 1 0 1
FRMD4A WILD-TYPE 37 81 43 88 79

Figure S203.  Get High-res Image Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FRMD4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S323.  Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FRMD4A MUTATED 2 5 4 1 4
FRMD4A WILD-TYPE 24 74 69 81 54
'FRMD4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0272 (Fisher's exact test), Q value = 0.1

Table S324.  Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FRMD4A MUTATED 5 7 3 1
FRMD4A WILD-TYPE 122 44 68 68

Figure S204.  Get High-res Image Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00387 (Fisher's exact test), Q value = 0.034

Table S325.  Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FRMD4A MUTATED 1 2 12 4 2
FRMD4A WILD-TYPE 83 83 73 65 45

Figure S205.  Get High-res Image Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FRMD4A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00128 (Fisher's exact test), Q value = 0.018

Table S326.  Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FRMD4A MUTATED 4 3 2 12
FRMD4A WILD-TYPE 91 71 119 68

Figure S206.  Get High-res Image Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.1

Table S327.  Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FRMD4A MUTATED 8 5 3 3 1 1
FRMD4A WILD-TYPE 44 59 69 101 39 58

Figure S207.  Get High-res Image Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FRMD4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0607 (Fisher's exact test), Q value = 0.16

Table S328.  Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FRMD4A MUTATED 17 2 2
FRMD4A WILD-TYPE 200 73 97
'FRMD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.17

Table S329.  Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FRMD4A MUTATED 9 2 6
FRMD4A WILD-TYPE 112 106 66
'FRMD4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.11

Table S330.  Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FRMD4A MUTATED 5 1 3 1 7
FRMD4A WILD-TYPE 83 65 42 54 40

Figure S208.  Get High-res Image Gene #33: 'FRMD4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MCM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 0.17

Table S331.  Gene #34: 'MCM8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MCM8 MUTATED 11 14 0 0
MCM8 WILD-TYPE 193 123 47 3
'MCM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 0.73

Table S332.  Gene #34: 'MCM8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MCM8 MUTATED 2 8 5 5 4
MCM8 WILD-TYPE 37 88 39 83 76
'MCM8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.35

Table S333.  Gene #34: 'MCM8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MCM8 MUTATED 0 8 4 3 6
MCM8 WILD-TYPE 26 71 69 79 52
'MCM8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S334.  Gene #34: 'MCM8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MCM8 MUTATED 7 6 5 3
MCM8 WILD-TYPE 120 45 66 66
'MCM8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S335.  Gene #34: 'MCM8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MCM8 MUTATED 5 6 8 4 1
MCM8 WILD-TYPE 79 79 77 65 46
'MCM8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S336.  Gene #34: 'MCM8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MCM8 MUTATED 6 4 8 6
MCM8 WILD-TYPE 89 70 113 74
'MCM8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.57

Table S337.  Gene #34: 'MCM8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MCM8 MUTATED 4 4 7 7 0 3
MCM8 WILD-TYPE 48 60 65 97 40 56
'MCM8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S338.  Gene #34: 'MCM8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MCM8 MUTATED 16 1 8
MCM8 WILD-TYPE 201 74 91
'MCM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 0.93

Table S339.  Gene #34: 'MCM8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MCM8 MUTATED 8 9 5
MCM8 WILD-TYPE 113 99 67
'MCM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.38

Table S340.  Gene #34: 'MCM8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MCM8 MUTATED 6 2 2 7 5
MCM8 WILD-TYPE 82 64 43 48 42
'APC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S341.  Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
APC MUTATED 18 24 6 0
APC WILD-TYPE 186 113 41 3
'APC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.53

Table S342.  Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
APC MUTATED 4 15 4 10 5
APC WILD-TYPE 35 81 40 78 75
'APC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S343.  Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
APC MUTATED 4 13 9 4 8
APC WILD-TYPE 22 66 64 78 50
'APC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S344.  Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
APC MUTATED 7 16 10 5
APC WILD-TYPE 120 35 61 64

Figure S209.  Get High-res Image Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S345.  Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
APC MUTATED 12 7 16 5 5
APC WILD-TYPE 72 78 69 64 42
'APC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.065

Table S346.  Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
APC MUTATED 11 4 12 18
APC WILD-TYPE 84 70 109 62

Figure S210.  Get High-res Image Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'APC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S347.  Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
APC MUTATED 8 16 12 2 2 7
APC WILD-TYPE 44 48 60 102 38 52

Figure S211.  Get High-res Image Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S348.  Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
APC MUTATED 30 4 13
APC WILD-TYPE 187 71 86
'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 0.018

Table S349.  Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
APC MUTATED 19 3 11
APC WILD-TYPE 102 105 61

Figure S212.  Get High-res Image Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'APC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S350.  Gene #35: 'APC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
APC MUTATED 10 2 7 7 7
APC WILD-TYPE 78 64 38 48 40
'TRIP4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.1

Table S351.  Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TRIP4 MUTATED 2 9 1 0
TRIP4 WILD-TYPE 202 128 46 3

Figure S213.  Get High-res Image Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRIP4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.61

Table S352.  Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TRIP4 MUTATED 1 4 2 1 1
TRIP4 WILD-TYPE 38 92 42 87 79
'TRIP4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.66

Table S353.  Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TRIP4 MUTATED 1 4 2 1 3
TRIP4 WILD-TYPE 25 75 71 81 55
'TRIP4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S354.  Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TRIP4 MUTATED 4 2 4 1
TRIP4 WILD-TYPE 123 49 67 68
'TRIP4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.61

Table S355.  Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TRIP4 MUTATED 1 2 5 2 2
TRIP4 WILD-TYPE 83 83 80 67 45
'TRIP4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S356.  Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TRIP4 MUTATED 5 2 1 4
TRIP4 WILD-TYPE 90 72 120 76
'TRIP4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S357.  Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TRIP4 MUTATED 4 4 1 2 0 1
TRIP4 WILD-TYPE 48 60 71 102 40 58
'TRIP4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.63

Table S358.  Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TRIP4 MUTATED 9 1 2
TRIP4 WILD-TYPE 208 74 97
'TRIP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S359.  Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TRIP4 MUTATED 3 2 3
TRIP4 WILD-TYPE 118 106 69
'TRIP4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.51

Table S360.  Gene #36: 'TRIP4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TRIP4 MUTATED 4 0 2 1 1
TRIP4 WILD-TYPE 84 66 43 54 46
'CTNND1 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S361.  Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CTNND1 MUTATED 3 19 2 0
CTNND1 WILD-TYPE 201 118 45 3

Figure S214.  Get High-res Image Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTNND1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.012

Table S362.  Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CTNND1 MUTATED 1 15 3 2 1
CTNND1 WILD-TYPE 38 81 41 86 79

Figure S215.  Get High-res Image Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTNND1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S363.  Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CTNND1 MUTATED 1 6 10 3 3
CTNND1 WILD-TYPE 25 73 63 79 55
'CTNND1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00613 (Fisher's exact test), Q value = 0.043

Table S364.  Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CTNND1 MUTATED 5 10 5 3
CTNND1 WILD-TYPE 122 41 66 66

Figure S216.  Get High-res Image Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00242 (Fisher's exact test), Q value = 0.026

Table S365.  Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CTNND1 MUTATED 1 4 12 1 4
CTNND1 WILD-TYPE 83 81 73 68 43

Figure S217.  Get High-res Image Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNND1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00892 (Fisher's exact test), Q value = 0.053

Table S366.  Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CTNND1 MUTATED 6 2 3 11
CTNND1 WILD-TYPE 89 72 118 69

Figure S218.  Get High-res Image Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S367.  Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CTNND1 MUTATED 7 6 4 4 2 1
CTNND1 WILD-TYPE 45 58 68 100 38 58
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.074

Table S368.  Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CTNND1 MUTATED 20 1 3
CTNND1 WILD-TYPE 197 74 96

Figure S219.  Get High-res Image Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.52

Table S369.  Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CTNND1 MUTATED 7 5 7
CTNND1 WILD-TYPE 114 103 65
'CTNND1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S370.  Gene #37: 'CTNND1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CTNND1 MUTATED 8 1 3 2 5
CTNND1 WILD-TYPE 80 65 42 53 42
'FAM9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00444 (Fisher's exact test), Q value = 0.036

Table S371.  Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM9A MUTATED 1 10 1 0
FAM9A WILD-TYPE 203 127 46 3

Figure S220.  Get High-res Image Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.5

Table S372.  Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM9A MUTATED 0 5 1 1 1
FAM9A WILD-TYPE 39 91 43 87 79
'FAM9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S373.  Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM9A MUTATED 2 4 2 3 1
FAM9A WILD-TYPE 24 75 71 79 57
'FAM9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S374.  Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM9A MUTATED 3 4 3 2
FAM9A WILD-TYPE 124 47 68 67
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.39

Table S375.  Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM9A MUTATED 2 2 5 0 2
FAM9A WILD-TYPE 82 83 80 69 45
'FAM9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S376.  Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM9A MUTATED 2 2 2 5
FAM9A WILD-TYPE 93 72 119 75
'FAM9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.37

Table S377.  Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM9A MUTATED 2 5 2 1 1 1
FAM9A WILD-TYPE 50 59 70 103 39 58
'FAM9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.12

Table S378.  Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM9A MUTATED 11 0 1
FAM9A WILD-TYPE 206 75 98

Figure S221.  Get High-res Image Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.41

Table S379.  Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM9A MUTATED 2 2 4
FAM9A WILD-TYPE 119 106 68
'FAM9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S380.  Gene #38: 'FAM9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM9A MUTATED 2 1 2 0 3
FAM9A WILD-TYPE 86 65 43 55 44
'SLC27A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.14

Table S381.  Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC27A3 MUTATED 1 6 2 0
SLC27A3 WILD-TYPE 203 131 45 3

Figure S222.  Get High-res Image Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC27A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S382.  Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC27A3 MUTATED 1 5 0 1 0
SLC27A3 WILD-TYPE 38 91 44 87 80
'SLC27A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S383.  Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC27A3 MUTATED 0 2 2 1 4
SLC27A3 WILD-TYPE 26 77 71 81 54
'SLC27A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.1

Table S384.  Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC27A3 MUTATED 2 5 1 1
SLC27A3 WILD-TYPE 125 46 70 68

Figure S223.  Get High-res Image Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00746 (Fisher's exact test), Q value = 0.048

Table S385.  Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC27A3 MUTATED 0 0 5 1 3
SLC27A3 WILD-TYPE 84 85 80 68 44

Figure S224.  Get High-res Image Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC27A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00622 (Fisher's exact test), Q value = 0.043

Table S386.  Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC27A3 MUTATED 2 1 0 6
SLC27A3 WILD-TYPE 93 73 121 74

Figure S225.  Get High-res Image Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S387.  Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC27A3 MUTATED 4 2 1 2 0 0
SLC27A3 WILD-TYPE 48 62 71 102 40 59
'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S388.  Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC27A3 MUTATED 8 0 1
SLC27A3 WILD-TYPE 209 75 98
'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S389.  Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC27A3 MUTATED 2 2 2
SLC27A3 WILD-TYPE 119 106 70
'SLC27A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S390.  Gene #39: 'SLC27A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC27A3 MUTATED 2 0 0 1 3
SLC27A3 WILD-TYPE 86 66 45 54 44
'PAX6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S391.  Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PAX6 MUTATED 7 12 1 0
PAX6 WILD-TYPE 197 125 46 3
'PAX6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.062

Table S392.  Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PAX6 MUTATED 0 11 2 1 3
PAX6 WILD-TYPE 39 85 42 87 77

Figure S226.  Get High-res Image Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAX6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S393.  Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PAX6 MUTATED 1 8 4 1 3
PAX6 WILD-TYPE 25 71 69 81 55
'PAX6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.011

Table S394.  Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PAX6 MUTATED 5 9 3 0
PAX6 WILD-TYPE 122 42 68 69

Figure S227.  Get High-res Image Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.023

Table S395.  Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PAX6 MUTATED 0 1 9 4 4
PAX6 WILD-TYPE 84 84 76 65 43

Figure S228.  Get High-res Image Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PAX6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.0081

Table S396.  Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PAX6 MUTATED 5 1 1 11
PAX6 WILD-TYPE 90 73 120 69

Figure S229.  Get High-res Image Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00517 (Fisher's exact test), Q value = 0.039

Table S397.  Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PAX6 MUTATED 6 7 3 3 0 0
PAX6 WILD-TYPE 46 57 69 101 40 59

Figure S230.  Get High-res Image Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.12

Table S398.  Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PAX6 MUTATED 16 1 2
PAX6 WILD-TYPE 201 74 97

Figure S231.  Get High-res Image Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.65

Table S399.  Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PAX6 MUTATED 7 3 3
PAX6 WILD-TYPE 114 105 69
'PAX6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0816 (Fisher's exact test), Q value = 0.19

Table S400.  Gene #40: 'PAX6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PAX6 MUTATED 5 0 3 1 4
PAX6 WILD-TYPE 83 66 42 54 43
'KRT75 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S401.  Gene #41: 'KRT75 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KRT75 MUTATED 15 18 3 1
KRT75 WILD-TYPE 189 119 44 2
'KRT75 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.55

Table S402.  Gene #41: 'KRT75 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KRT75 MUTATED 2 10 7 6 9
KRT75 WILD-TYPE 37 86 37 82 71
'KRT75 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.76

Table S403.  Gene #41: 'KRT75 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KRT75 MUTATED 1 9 4 8 5
KRT75 WILD-TYPE 25 70 69 74 53
'KRT75 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S404.  Gene #41: 'KRT75 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KRT75 MUTATED 11 5 6 5
KRT75 WILD-TYPE 116 46 65 64
'KRT75 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 0.86

Table S405.  Gene #41: 'KRT75 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KRT75 MUTATED 6 10 9 7 3
KRT75 WILD-TYPE 78 75 76 62 44
'KRT75 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S406.  Gene #41: 'KRT75 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KRT75 MUTATED 8 9 10 8
KRT75 WILD-TYPE 87 65 111 72
'KRT75 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.8

Table S407.  Gene #41: 'KRT75 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KRT75 MUTATED 4 5 10 11 2 5
KRT75 WILD-TYPE 48 59 62 93 38 54
'KRT75 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S408.  Gene #41: 'KRT75 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KRT75 MUTATED 23 4 10
KRT75 WILD-TYPE 194 71 89
'KRT75 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.44

Table S409.  Gene #41: 'KRT75 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KRT75 MUTATED 11 11 3
KRT75 WILD-TYPE 110 97 69
'KRT75 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.24

Table S410.  Gene #41: 'KRT75 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KRT75 MUTATED 6 4 1 9 5
KRT75 WILD-TYPE 82 62 44 46 42
'P4HTM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.91

Table S411.  Gene #42: 'P4HTM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
P4HTM MUTATED 15 9 2 0
P4HTM WILD-TYPE 189 128 45 3
'P4HTM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.762 (Fisher's exact test), Q value = 0.83

Table S412.  Gene #42: 'P4HTM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
P4HTM MUTATED 3 5 4 4 6
P4HTM WILD-TYPE 36 91 40 84 74
'P4HTM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.42

Table S413.  Gene #42: 'P4HTM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
P4HTM MUTATED 1 9 2 6 3
P4HTM WILD-TYPE 25 70 71 76 55
'P4HTM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 0.84

Table S414.  Gene #42: 'P4HTM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
P4HTM MUTATED 10 4 4 3
P4HTM WILD-TYPE 117 47 67 66
'P4HTM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 0.84

Table S415.  Gene #42: 'P4HTM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
P4HTM MUTATED 6 4 7 6 2
P4HTM WILD-TYPE 78 81 78 63 45
'P4HTM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S416.  Gene #42: 'P4HTM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
P4HTM MUTATED 7 5 8 5
P4HTM WILD-TYPE 88 69 113 75
'P4HTM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.953 (Fisher's exact test), Q value = 0.98

Table S417.  Gene #42: 'P4HTM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
P4HTM MUTATED 2 5 6 7 2 4
P4HTM WILD-TYPE 50 59 66 97 38 55
'P4HTM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S418.  Gene #42: 'P4HTM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
P4HTM MUTATED 15 3 8
P4HTM WILD-TYPE 202 72 91
'P4HTM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S419.  Gene #42: 'P4HTM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
P4HTM MUTATED 7 7 3
P4HTM WILD-TYPE 114 101 69
'P4HTM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S420.  Gene #42: 'P4HTM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
P4HTM MUTATED 6 2 2 6 1
P4HTM WILD-TYPE 82 64 43 49 46
'DSTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.48

Table S421.  Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DSTN MUTATED 2 4 0 0
DSTN WILD-TYPE 202 133 47 3
'DSTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.18

Table S422.  Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DSTN MUTATED 0 5 0 0 1
DSTN WILD-TYPE 39 91 44 88 79
'DSTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S423.  Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DSTN MUTATED 0 1 1 2 1
DSTN WILD-TYPE 26 78 72 80 57
'DSTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0963 (Fisher's exact test), Q value = 0.21

Table S424.  Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DSTN MUTATED 0 2 2 1
DSTN WILD-TYPE 127 49 69 68
'DSTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 0.76

Table S425.  Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DSTN MUTATED 0 2 2 1 1
DSTN WILD-TYPE 84 83 83 68 46
'DSTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0924 (Fisher's exact test), Q value = 0.21

Table S426.  Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DSTN MUTATED 1 2 0 3
DSTN WILD-TYPE 94 72 121 77
'DSTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.085

Table S427.  Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DSTN MUTATED 4 2 0 1 0 0
DSTN WILD-TYPE 48 62 72 103 40 59

Figure S232.  Get High-res Image Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DSTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 0.18

Table S428.  Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DSTN MUTATED 7 0 0
DSTN WILD-TYPE 210 75 99
'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.89

Table S429.  Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DSTN MUTATED 3 1 1
DSTN WILD-TYPE 118 107 71
'DSTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 0.12

Table S430.  Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DSTN MUTATED 0 1 1 0 3
DSTN WILD-TYPE 88 65 44 55 44

Figure S233.  Get High-res Image Gene #43: 'DSTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00121 (Fisher's exact test), Q value = 0.018

Table S431.  Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CIC MUTATED 15 29 3 0
CIC WILD-TYPE 189 108 44 3

Figure S234.  Get High-res Image Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CIC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.11

Table S432.  Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CIC MUTATED 5 20 5 5 7
CIC WILD-TYPE 34 76 39 83 73

Figure S235.  Get High-res Image Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CIC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.5

Table S433.  Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CIC MUTATED 1 11 8 7 10
CIC WILD-TYPE 25 68 65 75 48
'CIC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0014 (Fisher's exact test), Q value = 0.019

Table S434.  Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CIC MUTATED 7 12 13 5
CIC WILD-TYPE 120 39 58 64

Figure S236.  Get High-res Image Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.091

Table S435.  Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CIC MUTATED 5 9 19 7 4
CIC WILD-TYPE 79 76 66 62 43

Figure S237.  Get High-res Image Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CIC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.059

Table S436.  Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CIC MUTATED 8 11 8 17
CIC WILD-TYPE 87 63 113 63

Figure S238.  Get High-res Image Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CIC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S437.  Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CIC MUTATED 8 10 10 14 2 3
CIC WILD-TYPE 44 54 62 90 38 56
'CIC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S438.  Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CIC MUTATED 32 7 8
CIC WILD-TYPE 185 68 91
'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 0.86

Table S439.  Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CIC MUTATED 13 9 8
CIC WILD-TYPE 108 99 64
'CIC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0348 (Fisher's exact test), Q value = 0.12

Table S440.  Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CIC MUTATED 6 4 3 6 11
CIC WILD-TYPE 82 62 42 49 36

Figure S239.  Get High-res Image Gene #44: 'CIC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S441.  Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OSBP2 MUTATED 2 10 3 0
OSBP2 WILD-TYPE 202 127 44 3

Figure S240.  Get High-res Image Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OSBP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.018

Table S442.  Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OSBP2 MUTATED 3 8 1 0 0
OSBP2 WILD-TYPE 36 88 43 88 80

Figure S241.  Get High-res Image Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OSBP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.58

Table S443.  Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OSBP2 MUTATED 1 4 3 1 4
OSBP2 WILD-TYPE 25 75 70 81 54
'OSBP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00413 (Fisher's exact test), Q value = 0.035

Table S444.  Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OSBP2 MUTATED 2 7 3 1
OSBP2 WILD-TYPE 125 44 68 68

Figure S242.  Get High-res Image Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.18

Table S445.  Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OSBP2 MUTATED 1 1 7 3 3
OSBP2 WILD-TYPE 83 84 78 66 44
'OSBP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.067

Table S446.  Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OSBP2 MUTATED 4 2 1 8
OSBP2 WILD-TYPE 91 72 120 72

Figure S243.  Get High-res Image Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.015

Table S447.  Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OSBP2 MUTATED 5 6 2 0 2 0
OSBP2 WILD-TYPE 47 58 70 104 38 59

Figure S244.  Get High-res Image Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00937 (Fisher's exact test), Q value = 0.055

Table S448.  Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OSBP2 MUTATED 14 0 1
OSBP2 WILD-TYPE 203 75 98

Figure S245.  Get High-res Image Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'OSBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S449.  Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OSBP2 MUTATED 7 1 3
OSBP2 WILD-TYPE 114 107 69
'OSBP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 0.099

Table S450.  Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OSBP2 MUTATED 4 0 3 0 4
OSBP2 WILD-TYPE 84 66 42 55 43

Figure S246.  Get High-res Image Gene #45: 'OSBP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CEP57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00386 (Fisher's exact test), Q value = 0.034

Table S451.  Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CEP57 MUTATED 1 10 2 0
CEP57 WILD-TYPE 203 127 45 3

Figure S247.  Get High-res Image Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CEP57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.12

Table S452.  Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CEP57 MUTATED 1 6 0 0 1
CEP57 WILD-TYPE 38 90 44 88 79

Figure S248.  Get High-res Image Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CEP57 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S453.  Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CEP57 MUTATED 2 5 1 1 3
CEP57 WILD-TYPE 24 74 72 81 55
'CEP57 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.33

Table S454.  Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CEP57 MUTATED 3 4 4 1
CEP57 WILD-TYPE 124 47 67 68
'CEP57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.39

Table S455.  Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CEP57 MUTATED 1 2 5 1 3
CEP57 WILD-TYPE 83 83 80 68 44
'CEP57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S456.  Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CEP57 MUTATED 3 1 1 7
CEP57 WILD-TYPE 92 73 120 73

Figure S249.  Get High-res Image Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CEP57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S457.  Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CEP57 MUTATED 2 6 2 1 1 1
CEP57 WILD-TYPE 50 58 70 103 39 58
'CEP57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S458.  Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CEP57 MUTATED 10 1 2
CEP57 WILD-TYPE 207 74 97
'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.55

Table S459.  Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CEP57 MUTATED 3 1 3
CEP57 WILD-TYPE 118 107 69
'CEP57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S460.  Gene #46: 'CEP57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CEP57 MUTATED 3 0 2 0 2
CEP57 WILD-TYPE 85 66 43 55 45
'PRRG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00144 (Fisher's exact test), Q value = 0.019

Table S461.  Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRRG1 MUTATED 0 9 1 0
PRRG1 WILD-TYPE 204 128 46 3

Figure S250.  Get High-res Image Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRRG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.083

Table S462.  Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PRRG1 MUTATED 0 5 2 0 0
PRRG1 WILD-TYPE 39 91 42 88 80

Figure S251.  Get High-res Image Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRRG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S463.  Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRRG1 MUTATED 1 0 1 1 5
PRRG1 WILD-TYPE 25 79 72 81 53

Figure S252.  Get High-res Image Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PRRG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00322 (Fisher's exact test), Q value = 0.03

Table S464.  Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRRG1 MUTATED 1 5 0 2
PRRG1 WILD-TYPE 126 46 71 67

Figure S253.  Get High-res Image Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PRRG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.16

Table S465.  Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRRG1 MUTATED 0 4 5 1 0
PRRG1 WILD-TYPE 84 81 80 68 47
'PRRG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.008 (Fisher's exact test), Q value = 0.05

Table S466.  Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRRG1 MUTATED 2 2 0 6
PRRG1 WILD-TYPE 93 72 121 74

Figure S254.  Get High-res Image Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00471 (Fisher's exact test), Q value = 0.037

Table S467.  Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRRG1 MUTATED 1 6 2 0 1 0
PRRG1 WILD-TYPE 51 58 70 104 39 59

Figure S255.  Get High-res Image Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRRG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 0.2

Table S468.  Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRRG1 MUTATED 9 0 1
PRRG1 WILD-TYPE 208 75 98
'PRRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.55

Table S469.  Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PRRG1 MUTATED 3 1 3
PRRG1 WILD-TYPE 118 107 69
'PRRG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S470.  Gene #47: 'PRRG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PRRG1 MUTATED 3 0 1 0 3
PRRG1 WILD-TYPE 85 66 44 55 44
'BCOR MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S471.  Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BCOR MUTATED 2 23 2 1
BCOR WILD-TYPE 202 114 45 2

Figure S256.  Get High-res Image Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCOR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0012 (Fisher's exact test), Q value = 0.018

Table S472.  Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BCOR MUTATED 1 11 7 1 2
BCOR WILD-TYPE 38 85 37 87 78

Figure S257.  Get High-res Image Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCOR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00915 (Fisher's exact test), Q value = 0.054

Table S473.  Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BCOR MUTATED 1 9 4 1 9
BCOR WILD-TYPE 25 70 69 81 49

Figure S258.  Get High-res Image Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCOR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0054

Table S474.  Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BCOR MUTATED 8 12 3 1
BCOR WILD-TYPE 119 39 68 68

Figure S259.  Get High-res Image Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.085

Table S475.  Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BCOR MUTATED 1 5 12 4 3
BCOR WILD-TYPE 83 80 73 65 44

Figure S260.  Get High-res Image Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S476.  Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BCOR MUTATED 4 4 7 10
BCOR WILD-TYPE 91 70 114 70
'BCOR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00357 (Fisher's exact test), Q value = 0.032

Table S477.  Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BCOR MUTATED 4 12 5 6 0 1
BCOR WILD-TYPE 48 52 67 98 40 58

Figure S261.  Get High-res Image Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BCOR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 0.087

Table S478.  Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BCOR MUTATED 22 4 2
BCOR WILD-TYPE 195 71 97

Figure S262.  Get High-res Image Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S479.  Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BCOR MUTATED 9 4 7
BCOR WILD-TYPE 112 104 65
'BCOR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S480.  Gene #48: 'BCOR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BCOR MUTATED 4 4 6 1 5
BCOR WILD-TYPE 84 62 39 54 42
'KIAA1967 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S481.  Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1967 MUTATED 2 18 2 0
KIAA1967 WILD-TYPE 202 119 45 3

Figure S263.  Get High-res Image Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1967 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S482.  Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1967 MUTATED 0 14 2 1 0
KIAA1967 WILD-TYPE 39 82 42 87 80

Figure S264.  Get High-res Image Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1967 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.18

Table S483.  Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1967 MUTATED 0 10 5 2 3
KIAA1967 WILD-TYPE 26 69 68 80 55
'KIAA1967 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00328 (Fisher's exact test), Q value = 0.031

Table S484.  Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1967 MUTATED 3 8 7 2
KIAA1967 WILD-TYPE 124 43 64 67

Figure S265.  Get High-res Image Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S485.  Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1967 MUTATED 0 2 14 1 3
KIAA1967 WILD-TYPE 84 83 71 68 44

Figure S266.  Get High-res Image Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1967 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S486.  Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1967 MUTATED 5 4 0 11
KIAA1967 WILD-TYPE 90 70 121 69

Figure S267.  Get High-res Image Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.073

Table S487.  Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1967 MUTATED 4 8 6 3 1 0
KIAA1967 WILD-TYPE 48 56 66 101 39 59

Figure S268.  Get High-res Image Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0519 (Fisher's exact test), Q value = 0.15

Table S488.  Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1967 MUTATED 18 2 2
KIAA1967 WILD-TYPE 199 73 97
'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.31

Table S489.  Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1967 MUTATED 7 2 5
KIAA1967 WILD-TYPE 114 106 67
'KIAA1967 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S490.  Gene #49: 'KIAA1967 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1967 MUTATED 5 1 3 1 4
KIAA1967 WILD-TYPE 83 65 42 54 43
'KIAA1267 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S491.  Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1267 MUTATED 1 17 1 0
KIAA1267 WILD-TYPE 203 120 46 3

Figure S269.  Get High-res Image Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1267 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.18

Table S492.  Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1267 MUTATED 0 8 2 1 2
KIAA1267 WILD-TYPE 39 88 42 87 78
'KIAA1267 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S493.  Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1267 MUTATED 1 8 5 1 2
KIAA1267 WILD-TYPE 25 71 68 81 56
'KIAA1267 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.012

Table S494.  Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1267 MUTATED 2 9 4 2
KIAA1267 WILD-TYPE 125 42 67 67

Figure S270.  Get High-res Image Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1267 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.018

Table S495.  Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1267 MUTATED 1 4 11 0 2
KIAA1267 WILD-TYPE 83 81 74 69 45

Figure S271.  Get High-res Image Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1267 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S496.  Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1267 MUTATED 2 7 0 9
KIAA1267 WILD-TYPE 93 67 121 71

Figure S272.  Get High-res Image Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S497.  Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1267 MUTATED 6 7 1 4 0 1
KIAA1267 WILD-TYPE 46 57 71 100 40 58

Figure S273.  Get High-res Image Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.12

Table S498.  Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1267 MUTATED 16 1 2
KIAA1267 WILD-TYPE 201 74 97

Figure S274.  Get High-res Image Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.97

Table S499.  Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1267 MUTATED 6 4 3
KIAA1267 WILD-TYPE 115 104 69
'KIAA1267 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.37

Table S500.  Gene #50: 'KIAA1267 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1267 MUTATED 6 1 1 1 4
KIAA1267 WILD-TYPE 82 65 44 54 43
'ZNF48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.0094

Table S501.  Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF48 MUTATED 1 12 0 0
ZNF48 WILD-TYPE 203 125 47 3

Figure S275.  Get High-res Image Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00363 (Fisher's exact test), Q value = 0.033

Table S502.  Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF48 MUTATED 1 7 3 0 0
ZNF48 WILD-TYPE 38 89 41 88 80

Figure S276.  Get High-res Image Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 0.21

Table S503.  Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF48 MUTATED 0 3 5 0 3
ZNF48 WILD-TYPE 26 76 68 82 55
'ZNF48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00576 (Fisher's exact test), Q value = 0.042

Table S504.  Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF48 MUTATED 1 6 2 2
ZNF48 WILD-TYPE 126 45 69 67

Figure S277.  Get High-res Image Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S505.  Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF48 MUTATED 1 4 5 1 2
ZNF48 WILD-TYPE 83 81 80 68 45
'ZNF48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0774 (Fisher's exact test), Q value = 0.19

Table S506.  Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF48 MUTATED 4 2 1 6
ZNF48 WILD-TYPE 91 72 120 74
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S507.  Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF48 MUTATED 3 5 2 2 1 0
ZNF48 WILD-TYPE 49 59 70 102 39 59
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S508.  Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF48 MUTATED 10 2 1
ZNF48 WILD-TYPE 207 73 98
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S509.  Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF48 MUTATED 4 2 3
ZNF48 WILD-TYPE 117 106 69
'ZNF48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S510.  Gene #51: 'ZNF48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF48 MUTATED 2 1 2 0 4
ZNF48 WILD-TYPE 86 65 43 55 43
'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00678 (Fisher's exact test), Q value = 0.045

Table S511.  Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WASF3 MUTATED 4 14 1 0
WASF3 WILD-TYPE 200 123 46 3

Figure S278.  Get High-res Image Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S512.  Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WASF3 MUTATED 0 12 4 1 0
WASF3 WILD-TYPE 39 84 40 87 80

Figure S279.  Get High-res Image Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WASF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.35

Table S513.  Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WASF3 MUTATED 0 7 6 2 2
WASF3 WILD-TYPE 26 72 67 80 56
'WASF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00139 (Fisher's exact test), Q value = 0.019

Table S514.  Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WASF3 MUTATED 3 9 3 2
WASF3 WILD-TYPE 124 42 68 67

Figure S280.  Get High-res Image Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.077

Table S515.  Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WASF3 MUTATED 1 2 10 2 2
WASF3 WILD-TYPE 83 83 75 67 45

Figure S281.  Get High-res Image Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S516.  Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WASF3 MUTATED 3 3 3 8
WASF3 WILD-TYPE 92 71 118 72
'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.11

Table S517.  Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WASF3 MUTATED 7 5 3 2 1 1
WASF3 WILD-TYPE 45 59 69 102 39 58

Figure S282.  Get High-res Image Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.49

Table S518.  Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WASF3 MUTATED 14 2 3
WASF3 WILD-TYPE 203 73 96
'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S519.  Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WASF3 MUTATED 6 3 6
WASF3 WILD-TYPE 115 105 66
'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.591 (Fisher's exact test), Q value = 0.68

Table S520.  Gene #52: 'WASF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WASF3 MUTATED 6 2 3 1 3
WASF3 WILD-TYPE 82 64 42 54 44
'NLK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00772 (Fisher's exact test), Q value = 0.049

Table S521.  Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NLK MUTATED 2 11 1 0
NLK WILD-TYPE 202 126 46 3

Figure S283.  Get High-res Image Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NLK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0453 (Fisher's exact test), Q value = 0.13

Table S522.  Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NLK MUTATED 0 7 1 2 0
NLK WILD-TYPE 39 89 43 86 80

Figure S284.  Get High-res Image Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NLK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.48

Table S523.  Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NLK MUTATED 1 2 4 1 4
NLK WILD-TYPE 25 77 69 81 54
'NLK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00143 (Fisher's exact test), Q value = 0.019

Table S524.  Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NLK MUTATED 4 7 0 1
NLK WILD-TYPE 123 44 71 68

Figure S285.  Get High-res Image Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NLK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 0.96

Table S525.  Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NLK MUTATED 3 2 4 2 1
NLK WILD-TYPE 81 83 81 67 46
'NLK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S526.  Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NLK MUTATED 4 1 2 5
NLK WILD-TYPE 91 73 119 75
'NLK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.51

Table S527.  Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NLK MUTATED 2 5 3 2 0 2
NLK WILD-TYPE 50 59 69 102 40 57
'NLK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.15

Table S528.  Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NLK MUTATED 12 0 2
NLK WILD-TYPE 205 75 97
'NLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.1

Table S529.  Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NLK MUTATED 3 1 6
NLK WILD-TYPE 118 107 66

Figure S286.  Get High-res Image Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NLK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S530.  Gene #53: 'NLK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NLK MUTATED 2 1 1 1 5
NLK WILD-TYPE 86 65 44 54 42
'CYP27B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S531.  Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CYP27B1 MUTATED 2 5 2 0
CYP27B1 WILD-TYPE 202 132 45 3
'CYP27B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.32

Table S532.  Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CYP27B1 MUTATED 2 4 1 1 0
CYP27B1 WILD-TYPE 37 92 43 87 80
'CYP27B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 0.78

Table S533.  Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CYP27B1 MUTATED 0 4 1 2 2
CYP27B1 WILD-TYPE 26 75 72 80 56
'CYP27B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00771 (Fisher's exact test), Q value = 0.049

Table S534.  Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CYP27B1 MUTATED 0 4 3 2
CYP27B1 WILD-TYPE 127 47 68 67

Figure S287.  Get High-res Image Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.061

Table S535.  Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CYP27B1 MUTATED 0 0 5 1 0
CYP27B1 WILD-TYPE 84 85 80 68 47

Figure S288.  Get High-res Image Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CYP27B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.36

Table S536.  Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CYP27B1 MUTATED 2 2 0 2
CYP27B1 WILD-TYPE 93 72 121 78
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.73

Table S537.  Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CYP27B1 MUTATED 1 2 2 2 2 0
CYP27B1 WILD-TYPE 51 62 70 102 38 59
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.74

Table S538.  Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CYP27B1 MUTATED 6 2 1
CYP27B1 WILD-TYPE 211 73 98
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.16

Table S539.  Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CYP27B1 MUTATED 2 1 5
CYP27B1 WILD-TYPE 119 107 67
'CYP27B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 0.7

Table S540.  Gene #54: 'CYP27B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CYP27B1 MUTATED 2 1 1 1 3
CYP27B1 WILD-TYPE 86 65 44 54 44
'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S541.  Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C14ORF43 MUTATED 3 21 2 0
C14ORF43 WILD-TYPE 201 116 45 3

Figure S289.  Get High-res Image Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.013

Table S542.  Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C14ORF43 MUTATED 2 15 2 1 2
C14ORF43 WILD-TYPE 37 81 42 87 78

Figure S290.  Get High-res Image Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C14ORF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.41

Table S543.  Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C14ORF43 MUTATED 1 7 6 2 6
C14ORF43 WILD-TYPE 25 72 67 80 52
'C14ORF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S544.  Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C14ORF43 MUTATED 3 13 3 3
C14ORF43 WILD-TYPE 124 38 68 66

Figure S291.  Get High-res Image Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00264 (Fisher's exact test), Q value = 0.027

Table S545.  Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C14ORF43 MUTATED 1 3 13 3 4
C14ORF43 WILD-TYPE 83 82 72 66 43

Figure S292.  Get High-res Image Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0028 (Fisher's exact test), Q value = 0.028

Table S546.  Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C14ORF43 MUTATED 6 4 2 12
C14ORF43 WILD-TYPE 89 70 119 68

Figure S293.  Get High-res Image Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.17

Table S547.  Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C14ORF43 MUTATED 8 6 5 5 1 1
C14ORF43 WILD-TYPE 44 58 67 99 39 58
'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00813 (Fisher's exact test), Q value = 0.05

Table S548.  Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C14ORF43 MUTATED 21 4 1
C14ORF43 WILD-TYPE 196 71 98

Figure S294.  Get High-res Image Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.12

Table S549.  Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C14ORF43 MUTATED 11 2 6
C14ORF43 WILD-TYPE 110 106 66

Figure S295.  Get High-res Image Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.012

Table S550.  Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C14ORF43 MUTATED 4 3 2 0 10
C14ORF43 WILD-TYPE 84 63 43 55 37

Figure S296.  Get High-res Image Gene #55: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRSS36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00375 (Fisher's exact test), Q value = 0.033

Table S551.  Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRSS36 MUTATED 2 12 2 0
PRSS36 WILD-TYPE 202 125 45 3

Figure S297.  Get High-res Image Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRSS36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.059

Table S552.  Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PRSS36 MUTATED 0 7 3 1 0
PRSS36 WILD-TYPE 39 89 41 87 80

Figure S298.  Get High-res Image Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRSS36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.77

Table S553.  Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRSS36 MUTATED 1 5 3 2 4
PRSS36 WILD-TYPE 25 74 70 80 54
'PRSS36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S554.  Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRSS36 MUTATED 3 5 3 4
PRSS36 WILD-TYPE 124 46 68 65
'PRSS36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0967 (Fisher's exact test), Q value = 0.21

Table S555.  Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRSS36 MUTATED 0 3 6 3 3
PRSS36 WILD-TYPE 84 82 79 66 44
'PRSS36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00633 (Fisher's exact test), Q value = 0.044

Table S556.  Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRSS36 MUTATED 4 5 0 6
PRSS36 WILD-TYPE 91 69 121 74

Figure S299.  Get High-res Image Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRSS36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00619 (Fisher's exact test), Q value = 0.043

Table S557.  Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRSS36 MUTATED 1 8 1 3 3 0
PRSS36 WILD-TYPE 51 56 71 101 37 59

Figure S300.  Get High-res Image Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRSS36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.59

Table S558.  Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRSS36 MUTATED 10 4 2
PRSS36 WILD-TYPE 207 71 97
'PRSS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.21

Table S559.  Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PRSS36 MUTATED 5 1 5
PRSS36 WILD-TYPE 116 107 67
'PRSS36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S560.  Gene #56: 'PRSS36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PRSS36 MUTATED 4 2 3 0 2
PRSS36 WILD-TYPE 84 64 42 55 45
'FZD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00708 (Fisher's exact test), Q value = 0.047

Table S561.  Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FZD3 MUTATED 1 9 1 0
FZD3 WILD-TYPE 203 128 46 3

Figure S301.  Get High-res Image Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FZD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S562.  Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FZD3 MUTATED 0 7 2 0 1
FZD3 WILD-TYPE 39 89 42 88 79

Figure S302.  Get High-res Image Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FZD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.78

Table S563.  Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FZD3 MUTATED 0 4 1 2 2
FZD3 WILD-TYPE 26 75 72 80 56
'FZD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S564.  Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FZD3 MUTATED 2 4 2 1
FZD3 WILD-TYPE 125 47 69 68
'FZD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0807 (Fisher's exact test), Q value = 0.19

Table S565.  Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FZD3 MUTATED 0 3 4 0 2
FZD3 WILD-TYPE 84 82 81 69 45
'FZD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S566.  Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FZD3 MUTATED 1 1 2 5
FZD3 WILD-TYPE 94 73 119 75
'FZD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S567.  Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FZD3 MUTATED 2 4 2 1 2 0
FZD3 WILD-TYPE 50 60 70 103 38 59
'FZD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S568.  Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FZD3 MUTATED 8 2 1
FZD3 WILD-TYPE 209 73 98
'FZD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.34

Table S569.  Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FZD3 MUTATED 3 2 5
FZD3 WILD-TYPE 118 106 67
'FZD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.12

Table S570.  Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FZD3 MUTATED 4 0 2 0 4
FZD3 WILD-TYPE 84 66 43 55 43

Figure S303.  Get High-res Image Gene #57: 'FZD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NFASC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00107 (Fisher's exact test), Q value = 0.016

Table S571.  Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NFASC MUTATED 6 20 4 0
NFASC WILD-TYPE 198 117 43 3

Figure S304.  Get High-res Image Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NFASC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00631 (Fisher's exact test), Q value = 0.044

Table S572.  Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NFASC MUTATED 1 13 6 2 3
NFASC WILD-TYPE 38 83 38 86 77

Figure S305.  Get High-res Image Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NFASC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00133 (Fisher's exact test), Q value = 0.018

Table S573.  Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NFASC MUTATED 1 9 4 0 9
NFASC WILD-TYPE 25 70 69 82 49

Figure S306.  Get High-res Image Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NFASC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.012

Table S574.  Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NFASC MUTATED 5 10 7 1
NFASC WILD-TYPE 122 41 64 68

Figure S307.  Get High-res Image Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NFASC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S575.  Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NFASC MUTATED 1 3 17 6 3
NFASC WILD-TYPE 83 82 68 63 44

Figure S308.  Get High-res Image Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NFASC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00228 (Fisher's exact test), Q value = 0.025

Table S576.  Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NFASC MUTATED 9 2 5 14
NFASC WILD-TYPE 86 72 116 66

Figure S309.  Get High-res Image Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NFASC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S577.  Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NFASC MUTATED 10 11 6 2 0 2
NFASC WILD-TYPE 42 53 66 102 40 57

Figure S310.  Get High-res Image Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NFASC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.011

Table S578.  Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NFASC MUTATED 27 1 3
NFASC WILD-TYPE 190 74 96

Figure S311.  Get High-res Image Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.077 (Fisher's exact test), Q value = 0.19

Table S579.  Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NFASC MUTATED 14 4 4
NFASC WILD-TYPE 107 104 68
'NFASC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00944 (Fisher's exact test), Q value = 0.055

Table S580.  Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NFASC MUTATED 8 1 4 1 8
NFASC WILD-TYPE 80 65 41 54 39

Figure S312.  Get High-res Image Gene #58: 'NFASC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.12

Table S581.  Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GRK4 MUTATED 2 8 0 0
GRK4 WILD-TYPE 202 129 47 3

Figure S313.  Get High-res Image Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.19

Table S582.  Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GRK4 MUTATED 1 6 1 0 1
GRK4 WILD-TYPE 38 90 43 88 79
'GRK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S583.  Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GRK4 MUTATED 1 6 2 0 0
GRK4 WILD-TYPE 25 73 71 82 58

Figure S314.  Get High-res Image Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GRK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S584.  Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GRK4 MUTATED 1 8 0 0
GRK4 WILD-TYPE 126 43 71 69

Figure S315.  Get High-res Image Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S585.  Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GRK4 MUTATED 1 0 8 0 0
GRK4 WILD-TYPE 83 85 77 69 47

Figure S316.  Get High-res Image Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S586.  Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GRK4 MUTATED 1 1 2 5
GRK4 WILD-TYPE 94 73 119 75
'GRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.062

Table S587.  Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GRK4 MUTATED 3 5 2 0 1 0
GRK4 WILD-TYPE 49 59 70 104 39 59

Figure S317.  Get High-res Image Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00903 (Fisher's exact test), Q value = 0.054

Table S588.  Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GRK4 MUTATED 11 0 0
GRK4 WILD-TYPE 206 75 99

Figure S318.  Get High-res Image Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.11

Table S589.  Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GRK4 MUTATED 5 0 4
GRK4 WILD-TYPE 116 108 68

Figure S319.  Get High-res Image Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00161 (Fisher's exact test), Q value = 0.02

Table S590.  Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GRK4 MUTATED 1 0 3 0 5
GRK4 WILD-TYPE 87 66 42 55 42

Figure S320.  Get High-res Image Gene #59: 'GRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00197 (Fisher's exact test), Q value = 0.023

Table S591.  Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ATXN2L MUTATED 4 16 2 0
ATXN2L WILD-TYPE 200 121 45 3

Figure S321.  Get High-res Image Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATXN2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S592.  Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ATXN2L MUTATED 1 15 1 1 0
ATXN2L WILD-TYPE 38 81 43 87 80

Figure S322.  Get High-res Image Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATXN2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.74

Table S593.  Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ATXN2L MUTATED 1 5 7 3 3
ATXN2L WILD-TYPE 25 74 66 79 55
'ATXN2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0037

Table S594.  Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ATXN2L MUTATED 3 11 3 2
ATXN2L WILD-TYPE 124 40 68 67

Figure S323.  Get High-res Image Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S595.  Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ATXN2L MUTATED 1 3 13 0 5
ATXN2L WILD-TYPE 83 82 72 69 42

Figure S324.  Get High-res Image Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATXN2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S596.  Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ATXN2L MUTATED 5 4 0 13
ATXN2L WILD-TYPE 90 70 121 67

Figure S325.  Get High-res Image Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S597.  Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ATXN2L MUTATED 3 8 6 3 2 1
ATXN2L WILD-TYPE 49 56 66 101 38 58
'ATXN2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S598.  Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ATXN2L MUTATED 17 2 4
ATXN2L WILD-TYPE 200 73 95
'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.7

Table S599.  Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ATXN2L MUTATED 7 4 5
ATXN2L WILD-TYPE 114 104 67
'ATXN2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S600.  Gene #60: 'ATXN2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ATXN2L MUTATED 6 1 3 1 5
ATXN2L WILD-TYPE 82 65 42 54 42
'GLI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.011

Table S601.  Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GLI1 MUTATED 3 16 1 0
GLI1 WILD-TYPE 201 121 46 3

Figure S326.  Get High-res Image Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0021 (Fisher's exact test), Q value = 0.024

Table S602.  Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GLI1 MUTATED 0 10 3 0 2
GLI1 WILD-TYPE 39 86 41 88 78

Figure S327.  Get High-res Image Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GLI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.16

Table S603.  Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GLI1 MUTATED 1 9 3 1 2
GLI1 WILD-TYPE 25 70 70 81 56
'GLI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S604.  Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GLI1 MUTATED 3 6 6 1
GLI1 WILD-TYPE 124 45 65 68

Figure S328.  Get High-res Image Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GLI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.021

Table S605.  Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GLI1 MUTATED 0 4 11 2 1
GLI1 WILD-TYPE 84 81 74 67 46

Figure S329.  Get High-res Image Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GLI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S606.  Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GLI1 MUTATED 7 2 2 7
GLI1 WILD-TYPE 88 72 119 73
'GLI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0059 (Fisher's exact test), Q value = 0.042

Table S607.  Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GLI1 MUTATED 2 10 3 4 1 0
GLI1 WILD-TYPE 50 54 69 100 39 59

Figure S330.  Get High-res Image Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GLI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0503 (Fisher's exact test), Q value = 0.14

Table S608.  Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GLI1 MUTATED 16 3 1
GLI1 WILD-TYPE 201 72 98
'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S609.  Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GLI1 MUTATED 4 4 6
GLI1 WILD-TYPE 117 104 66
'GLI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S610.  Gene #61: 'GLI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GLI1 MUTATED 4 2 4 0 4
GLI1 WILD-TYPE 84 64 41 55 43
'INPPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S611.  Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
INPPL1 MUTATED 3 20 1 0
INPPL1 WILD-TYPE 201 117 46 3

Figure S331.  Get High-res Image Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INPPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.013

Table S612.  Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
INPPL1 MUTATED 0 8 5 0 1
INPPL1 WILD-TYPE 39 88 39 88 79

Figure S332.  Get High-res Image Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'INPPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.16

Table S613.  Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
INPPL1 MUTATED 1 11 2 3 4
INPPL1 WILD-TYPE 25 68 71 79 54
'INPPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.018

Table S614.  Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
INPPL1 MUTATED 4 10 5 2
INPPL1 WILD-TYPE 123 41 66 67

Figure S333.  Get High-res Image Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.018

Table S615.  Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
INPPL1 MUTATED 0 5 12 2 3
INPPL1 WILD-TYPE 84 80 73 67 44

Figure S334.  Get High-res Image Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'INPPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.086

Table S616.  Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
INPPL1 MUTATED 9 3 2 8
INPPL1 WILD-TYPE 86 71 119 72

Figure S335.  Get High-res Image Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S617.  Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
INPPL1 MUTATED 3 13 3 4 1 0
INPPL1 WILD-TYPE 49 51 69 100 39 59

Figure S336.  Get High-res Image Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0419 (Fisher's exact test), Q value = 0.13

Table S618.  Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
INPPL1 MUTATED 19 3 2
INPPL1 WILD-TYPE 198 72 97

Figure S337.  Get High-res Image Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.56

Table S619.  Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
INPPL1 MUTATED 5 3 5
INPPL1 WILD-TYPE 116 105 67
'INPPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.43

Table S620.  Gene #62: 'INPPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
INPPL1 MUTATED 5 2 3 0 3
INPPL1 WILD-TYPE 83 64 42 55 44
'SOX7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 0.023

Table S621.  Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SOX7 MUTATED 5 13 0 1
SOX7 WILD-TYPE 199 124 47 2

Figure S338.  Get High-res Image Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOX7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S622.  Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SOX7 MUTATED 2 8 2 1 3
SOX7 WILD-TYPE 37 88 42 87 77
'SOX7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00419 (Fisher's exact test), Q value = 0.035

Table S623.  Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SOX7 MUTATED 4 7 2 0 3
SOX7 WILD-TYPE 22 72 71 82 55

Figure S339.  Get High-res Image Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SOX7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.57

Table S624.  Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SOX7 MUTATED 5 3 6 2
SOX7 WILD-TYPE 122 48 65 67
'SOX7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.49

Table S625.  Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SOX7 MUTATED 1 4 6 4 3
SOX7 WILD-TYPE 83 81 79 65 44
'SOX7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S626.  Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SOX7 MUTATED 8 3 2 5
SOX7 WILD-TYPE 87 71 119 75
'SOX7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.058

Table S627.  Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SOX7 MUTATED 5 7 2 1 3 1
SOX7 WILD-TYPE 47 57 70 103 37 58

Figure S340.  Get High-res Image Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.12

Table S628.  Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SOX7 MUTATED 16 1 2
SOX7 WILD-TYPE 201 74 97

Figure S341.  Get High-res Image Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S629.  Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SOX7 MUTATED 4 4 7
SOX7 WILD-TYPE 117 104 65
'SOX7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S630.  Gene #63: 'SOX7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SOX7 MUTATED 6 3 3 0 3
SOX7 WILD-TYPE 82 63 42 55 44
'FHOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00097 (Fisher's exact test), Q value = 0.015

Table S631.  Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FHOD3 MUTATED 6 20 4 0
FHOD3 WILD-TYPE 198 117 43 3

Figure S342.  Get High-res Image Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FHOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S632.  Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FHOD3 MUTATED 1 13 5 1 0
FHOD3 WILD-TYPE 38 83 39 87 80

Figure S343.  Get High-res Image Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FHOD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.6

Table S633.  Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FHOD3 MUTATED 2 5 7 3 6
FHOD3 WILD-TYPE 24 74 66 79 52
'FHOD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.093

Table S634.  Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FHOD3 MUTATED 7 9 2 5
FHOD3 WILD-TYPE 120 42 69 64

Figure S344.  Get High-res Image Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.61

Table S635.  Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FHOD3 MUTATED 3 6 8 5 5
FHOD3 WILD-TYPE 81 79 77 64 42
'FHOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.13

Table S636.  Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FHOD3 MUTATED 8 4 4 11
FHOD3 WILD-TYPE 87 70 117 69

Figure S345.  Get High-res Image Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S637.  Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FHOD3 MUTATED 10 11 4 2 0 3
FHOD3 WILD-TYPE 42 53 68 102 40 56

Figure S346.  Get High-res Image Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.004 (Fisher's exact test), Q value = 0.034

Table S638.  Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FHOD3 MUTATED 25 1 4
FHOD3 WILD-TYPE 192 74 95

Figure S347.  Get High-res Image Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00797 (Fisher's exact test), Q value = 0.05

Table S639.  Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FHOD3 MUTATED 10 1 7
FHOD3 WILD-TYPE 111 107 65

Figure S348.  Get High-res Image Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FHOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00974 (Fisher's exact test), Q value = 0.056

Table S640.  Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FHOD3 MUTATED 8 0 3 1 6
FHOD3 WILD-TYPE 80 66 42 54 41

Figure S349.  Get High-res Image Gene #64: 'FHOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNF128 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0016 (Fisher's exact test), Q value = 0.02

Table S641.  Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RNF128 MUTATED 1 11 2 0
RNF128 WILD-TYPE 203 126 45 3

Figure S350.  Get High-res Image Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF128 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.076

Table S642.  Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RNF128 MUTATED 0 9 2 1 1
RNF128 WILD-TYPE 39 87 42 87 79

Figure S351.  Get High-res Image Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RNF128 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S643.  Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RNF128 MUTATED 1 3 4 0 4
RNF128 WILD-TYPE 25 76 69 82 54
'RNF128 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.065

Table S644.  Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RNF128 MUTATED 2 6 3 1
RNF128 WILD-TYPE 125 45 68 68

Figure S352.  Get High-res Image Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RNF128 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.2

Table S645.  Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RNF128 MUTATED 1 2 7 1 3
RNF128 WILD-TYPE 83 83 78 68 44
'RNF128 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S646.  Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RNF128 MUTATED 2 2 3 7
RNF128 WILD-TYPE 93 72 118 73
'RNF128 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.14

Table S647.  Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RNF128 MUTATED 5 4 3 1 0 1
RNF128 WILD-TYPE 47 60 69 103 40 58

Figure S353.  Get High-res Image Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNF128 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.068

Table S648.  Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RNF128 MUTATED 13 0 1
RNF128 WILD-TYPE 204 75 98

Figure S354.  Get High-res Image Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RNF128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.086

Table S649.  Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RNF128 MUTATED 7 0 3
RNF128 WILD-TYPE 114 108 69

Figure S355.  Get High-res Image Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RNF128 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0271 (Fisher's exact test), Q value = 0.1

Table S650.  Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RNF128 MUTATED 2 0 2 1 5
RNF128 WILD-TYPE 86 66 43 54 42

Figure S356.  Get High-res Image Gene #65: 'RNF128 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.0081

Table S651.  Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HLA-A MUTATED 2 15 2 0
HLA-A WILD-TYPE 202 122 45 3

Figure S357.  Get High-res Image Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HLA-A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.14

Table S652.  Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HLA-A MUTATED 1 7 4 1 1
HLA-A WILD-TYPE 38 89 40 87 79

Figure S358.  Get High-res Image Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HLA-A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00621 (Fisher's exact test), Q value = 0.043

Table S653.  Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HLA-A MUTATED 0 9 3 0 4
HLA-A WILD-TYPE 26 70 70 82 54

Figure S359.  Get High-res Image Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HLA-A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S654.  Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HLA-A MUTATED 1 9 6 0
HLA-A WILD-TYPE 126 42 65 69

Figure S360.  Get High-res Image Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.1

Table S655.  Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HLA-A MUTATED 1 3 10 2 3
HLA-A WILD-TYPE 83 82 75 67 44

Figure S361.  Get High-res Image Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S656.  Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HLA-A MUTATED 5 1 1 12
HLA-A WILD-TYPE 90 73 120 68

Figure S362.  Get High-res Image Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00435 (Fisher's exact test), Q value = 0.035

Table S657.  Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HLA-A MUTATED 4 8 5 1 0 1
HLA-A WILD-TYPE 48 56 67 103 40 58

Figure S363.  Get High-res Image Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00552 (Fisher's exact test), Q value = 0.041

Table S658.  Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HLA-A MUTATED 17 0 2
HLA-A WILD-TYPE 200 75 97

Figure S364.  Get High-res Image Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00618 (Fisher's exact test), Q value = 0.043

Table S659.  Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HLA-A MUTATED 9 0 4
HLA-A WILD-TYPE 112 108 68

Figure S365.  Get High-res Image Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HLA-A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S660.  Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HLA-A MUTATED 2 0 2 0 9
HLA-A WILD-TYPE 86 66 43 55 38

Figure S366.  Get High-res Image Gene #66: 'HLA-A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0068

Table S661.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MFRP MUTATED 1 13 1 0
MFRP WILD-TYPE 203 124 46 3

Figure S367.  Get High-res Image Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MFRP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00299 (Fisher's exact test), Q value = 0.029

Table S662.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MFRP MUTATED 1 6 4 0 0
MFRP WILD-TYPE 38 90 40 88 80

Figure S368.  Get High-res Image Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MFRP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.088

Table S663.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MFRP MUTATED 1 5 2 0 6
MFRP WILD-TYPE 25 74 71 82 52

Figure S369.  Get High-res Image Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MFRP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0022 (Fisher's exact test), Q value = 0.024

Table S664.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MFRP MUTATED 3 7 4 0
MFRP WILD-TYPE 124 44 67 69

Figure S370.  Get High-res Image Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0632 (Fisher's exact test), Q value = 0.17

Table S665.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MFRP MUTATED 1 3 8 1 1
MFRP WILD-TYPE 83 82 77 68 46
'MFRP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S666.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MFRP MUTATED 3 0 1 10
MFRP WILD-TYPE 92 74 120 70

Figure S371.  Get High-res Image Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MFRP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.58

Table S667.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MFRP MUTATED 3 4 4 3 0 1
MFRP WILD-TYPE 49 60 68 101 40 58
'MFRP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S668.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MFRP MUTATED 12 1 2
MFRP WILD-TYPE 205 74 97
'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.72

Table S669.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MFRP MUTATED 4 2 3
MFRP WILD-TYPE 117 106 69
'MFRP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S670.  Gene #67: 'MFRP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MFRP MUTATED 3 1 1 0 4
MFRP WILD-TYPE 85 65 44 55 43
'EIF5B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S671.  Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EIF5B MUTATED 2 22 1 0
EIF5B WILD-TYPE 202 115 46 3

Figure S372.  Get High-res Image Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0072

Table S672.  Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EIF5B MUTATED 3 12 4 0 1
EIF5B WILD-TYPE 36 84 40 88 79

Figure S373.  Get High-res Image Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.2

Table S673.  Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EIF5B MUTATED 2 9 5 1 4
EIF5B WILD-TYPE 24 70 68 81 54
'EIF5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S674.  Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EIF5B MUTATED 2 12 6 1
EIF5B WILD-TYPE 125 39 65 68

Figure S374.  Get High-res Image Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S675.  Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EIF5B MUTATED 0 1 15 3 4
EIF5B WILD-TYPE 84 84 70 66 43

Figure S375.  Get High-res Image Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0072

Table S676.  Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EIF5B MUTATED 4 2 3 14
EIF5B WILD-TYPE 91 72 118 66

Figure S376.  Get High-res Image Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.011

Table S677.  Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EIF5B MUTATED 7 10 4 2 2 0
EIF5B WILD-TYPE 45 54 68 102 38 59

Figure S377.  Get High-res Image Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00217 (Fisher's exact test), Q value = 0.024

Table S678.  Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EIF5B MUTATED 22 2 1
EIF5B WILD-TYPE 195 73 98

Figure S378.  Get High-res Image Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00052 (Fisher's exact test), Q value = 0.011

Table S679.  Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EIF5B MUTATED 9 0 8
EIF5B WILD-TYPE 112 108 64

Figure S379.  Get High-res Image Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EIF5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0059 (Fisher's exact test), Q value = 0.042

Table S680.  Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EIF5B MUTATED 5 1 4 0 7
EIF5B WILD-TYPE 83 65 41 55 40

Figure S380.  Get High-res Image Gene #68: 'EIF5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C9ORF131 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S681.  Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C9ORF131 MUTATED 2 16 1 0
C9ORF131 WILD-TYPE 202 121 46 3

Figure S381.  Get High-res Image Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF131 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.19

Table S682.  Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C9ORF131 MUTATED 1 9 2 1 2
C9ORF131 WILD-TYPE 38 87 42 87 78
'C9ORF131 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S683.  Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C9ORF131 MUTATED 0 5 5 2 2
C9ORF131 WILD-TYPE 26 74 68 80 56
'C9ORF131 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00199 (Fisher's exact test), Q value = 0.023

Table S684.  Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C9ORF131 MUTATED 1 7 4 2
C9ORF131 WILD-TYPE 126 44 67 67

Figure S382.  Get High-res Image Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0314 (Fisher's exact test), Q value = 0.11

Table S685.  Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C9ORF131 MUTATED 0 4 8 3 1
C9ORF131 WILD-TYPE 84 81 77 66 46

Figure S383.  Get High-res Image Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C9ORF131 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0371 (Fisher's exact test), Q value = 0.12

Table S686.  Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C9ORF131 MUTATED 5 3 1 7
C9ORF131 WILD-TYPE 90 71 120 73

Figure S384.  Get High-res Image Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 0.13

Table S687.  Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C9ORF131 MUTATED 6 6 2 2 2 1
C9ORF131 WILD-TYPE 46 58 70 102 38 58

Figure S385.  Get High-res Image Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.855 (Fisher's exact test), Q value = 0.9

Table S688.  Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C9ORF131 MUTATED 12 3 4
C9ORF131 WILD-TYPE 205 72 95
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0756 (Fisher's exact test), Q value = 0.18

Table S689.  Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C9ORF131 MUTATED 6 1 5
C9ORF131 WILD-TYPE 115 107 67
'C9ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S690.  Gene #69: 'C9ORF131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C9ORF131 MUTATED 4 1 2 1 4
C9ORF131 WILD-TYPE 84 65 43 54 43
'BCORL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0073

Table S691.  Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BCORL1 MUTATED 4 19 3 0
BCORL1 WILD-TYPE 200 118 44 3

Figure S386.  Get High-res Image Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCORL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.13

Table S692.  Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BCORL1 MUTATED 3 11 4 2 2
BCORL1 WILD-TYPE 36 85 40 86 78

Figure S387.  Get High-res Image Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCORL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S693.  Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BCORL1 MUTATED 1 6 8 0 6
BCORL1 WILD-TYPE 25 73 65 82 52

Figure S388.  Get High-res Image Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCORL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00108 (Fisher's exact test), Q value = 0.016

Table S694.  Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BCORL1 MUTATED 5 10 5 1
BCORL1 WILD-TYPE 122 41 66 68

Figure S389.  Get High-res Image Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S695.  Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BCORL1 MUTATED 2 6 10 4 4
BCORL1 WILD-TYPE 82 79 75 65 43
'BCORL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.011

Table S696.  Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BCORL1 MUTATED 7 2 3 14
BCORL1 WILD-TYPE 88 72 118 66

Figure S390.  Get High-res Image Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S697.  Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BCORL1 MUTATED 6 8 4 4 1 3
BCORL1 WILD-TYPE 46 56 68 100 39 56
'BCORL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.12

Table S698.  Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BCORL1 MUTATED 20 1 5
BCORL1 WILD-TYPE 197 74 94

Figure S391.  Get High-res Image Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.14

Table S699.  Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BCORL1 MUTATED 9 2 7
BCORL1 WILD-TYPE 112 106 65

Figure S392.  Get High-res Image Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BCORL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00214 (Fisher's exact test), Q value = 0.024

Table S700.  Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BCORL1 MUTATED 6 0 3 1 8
BCORL1 WILD-TYPE 82 66 42 54 39

Figure S393.  Get High-res Image Gene #70: 'BCORL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PAFAH1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00787 (Fisher's exact test), Q value = 0.049

Table S701.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PAFAH1B1 MUTATED 2 11 1 0
PAFAH1B1 WILD-TYPE 202 126 46 3

Figure S394.  Get High-res Image Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.075

Table S702.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PAFAH1B1 MUTATED 1 8 0 0 3
PAFAH1B1 WILD-TYPE 38 88 44 88 77

Figure S395.  Get High-res Image Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.2

Table S703.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PAFAH1B1 MUTATED 1 1 6 1 4
PAFAH1B1 WILD-TYPE 25 78 67 81 54
'PAFAH1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00624 (Fisher's exact test), Q value = 0.044

Table S704.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PAFAH1B1 MUTATED 4 7 1 1
PAFAH1B1 WILD-TYPE 123 44 70 68

Figure S396.  Get High-res Image Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAFAH1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.1

Table S705.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PAFAH1B1 MUTATED 0 3 8 2 2
PAFAH1B1 WILD-TYPE 84 82 77 67 45

Figure S397.  Get High-res Image Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.3

Table S706.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PAFAH1B1 MUTATED 3 2 3 7
PAFAH1B1 WILD-TYPE 92 72 118 73
'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.14

Table S707.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PAFAH1B1 MUTATED 4 6 2 2 1 0
PAFAH1B1 WILD-TYPE 48 58 70 102 39 59

Figure S398.  Get High-res Image Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.064 (Fisher's exact test), Q value = 0.17

Table S708.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PAFAH1B1 MUTATED 13 1 1
PAFAH1B1 WILD-TYPE 204 74 98
'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.34

Table S709.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PAFAH1B1 MUTATED 4 2 5
PAFAH1B1 WILD-TYPE 117 106 67
'PAFAH1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0964 (Fisher's exact test), Q value = 0.21

Table S710.  Gene #71: 'PAFAH1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PAFAH1B1 MUTATED 3 1 3 0 4
PAFAH1B1 WILD-TYPE 85 65 42 55 43
'EPB49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00445 (Fisher's exact test), Q value = 0.036

Table S711.  Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EPB49 MUTATED 2 11 0 0
EPB49 WILD-TYPE 202 126 47 3

Figure S399.  Get High-res Image Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPB49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0797 (Fisher's exact test), Q value = 0.19

Table S712.  Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EPB49 MUTATED 0 6 1 0 2
EPB49 WILD-TYPE 39 90 43 88 78
'EPB49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S713.  Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EPB49 MUTATED 0 3 3 0 4
EPB49 WILD-TYPE 26 76 70 82 54
'EPB49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0126 (Fisher's exact test), Q value = 0.065

Table S714.  Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EPB49 MUTATED 2 5 3 0
EPB49 WILD-TYPE 125 46 68 69

Figure S400.  Get High-res Image Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPB49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.11

Table S715.  Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EPB49 MUTATED 0 3 7 1 2
EPB49 WILD-TYPE 84 82 78 68 45

Figure S401.  Get High-res Image Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPB49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0781 (Fisher's exact test), Q value = 0.19

Table S716.  Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EPB49 MUTATED 4 2 1 6
EPB49 WILD-TYPE 91 72 120 74
'EPB49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 0.18

Table S717.  Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EPB49 MUTATED 3 5 3 1 1 0
EPB49 WILD-TYPE 49 59 69 103 39 59
'EPB49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S718.  Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EPB49 MUTATED 10 2 1
EPB49 WILD-TYPE 207 73 98
'EPB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.51

Table S719.  Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EPB49 MUTATED 5 1 2
EPB49 WILD-TYPE 116 107 70
'EPB49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.011

Table S720.  Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EPB49 MUTATED 1 0 1 0 6
EPB49 WILD-TYPE 87 66 44 55 41

Figure S402.  Get High-res Image Gene #72: 'EPB49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.0081

Table S721.  Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DDC MUTATED 0 7 2 1
DDC WILD-TYPE 204 130 45 2

Figure S403.  Get High-res Image Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S722.  Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DDC MUTATED 1 3 2 0 1
DDC WILD-TYPE 38 93 42 88 79
'DDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S723.  Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DDC MUTATED 1 3 2 0 3
DDC WILD-TYPE 25 76 71 82 55
'DDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.65

Table S724.  Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DDC MUTATED 3 3 2 1
DDC WILD-TYPE 124 48 69 68
'DDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.45

Table S725.  Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DDC MUTATED 0 2 4 1 1
DDC WILD-TYPE 84 83 81 68 46
'DDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 0.91

Table S726.  Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DDC MUTATED 3 1 2 2
DDC WILD-TYPE 92 73 119 78
'DDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00185 (Fisher's exact test), Q value = 0.022

Table S727.  Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DDC MUTATED 0 6 3 0 1 0
DDC WILD-TYPE 52 58 69 104 39 59

Figure S404.  Get High-res Image Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.064

Table S728.  Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DDC MUTATED 10 0 0
DDC WILD-TYPE 207 75 99

Figure S405.  Get High-res Image Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.18

Table S729.  Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DDC MUTATED 4 0 3
DDC WILD-TYPE 117 108 69
'DDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S730.  Gene #73: 'DDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DDC MUTATED 4 0 2 0 1
DDC WILD-TYPE 84 66 43 55 46
'IWS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.11

Table S731.  Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IWS1 MUTATED 3 10 1 0
IWS1 WILD-TYPE 201 127 46 3

Figure S406.  Get High-res Image Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IWS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.11

Table S732.  Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IWS1 MUTATED 1 7 2 0 1
IWS1 WILD-TYPE 38 89 42 88 79

Figure S407.  Get High-res Image Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IWS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.17

Table S733.  Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IWS1 MUTATED 0 6 4 0 2
IWS1 WILD-TYPE 26 73 69 82 56
'IWS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00042 (Fisher's exact test), Q value = 0.0094

Table S734.  Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IWS1 MUTATED 1 6 5 0
IWS1 WILD-TYPE 126 45 66 69

Figure S408.  Get High-res Image Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IWS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00891 (Fisher's exact test), Q value = 0.053

Table S735.  Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IWS1 MUTATED 0 2 8 1 1
IWS1 WILD-TYPE 84 83 77 68 46

Figure S409.  Get High-res Image Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IWS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.13

Table S736.  Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IWS1 MUTATED 2 1 2 7
IWS1 WILD-TYPE 93 73 119 73

Figure S410.  Get High-res Image Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0081 (Fisher's exact test), Q value = 0.05

Table S737.  Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IWS1 MUTATED 4 6 3 1 0 0
IWS1 WILD-TYPE 48 58 69 103 40 59

Figure S411.  Get High-res Image Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IWS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0963 (Fisher's exact test), Q value = 0.21

Table S738.  Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IWS1 MUTATED 12 1 1
IWS1 WILD-TYPE 205 74 98
'IWS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S739.  Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IWS1 MUTATED 3 1 3
IWS1 WILD-TYPE 118 107 69
'IWS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.2

Table S740.  Gene #74: 'IWS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IWS1 MUTATED 2 0 2 0 3
IWS1 WILD-TYPE 86 66 43 55 44
'LMAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S741.  Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LMAN1 MUTATED 0 11 2 0
LMAN1 WILD-TYPE 204 126 45 3

Figure S412.  Get High-res Image Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LMAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0878 (Fisher's exact test), Q value = 0.2

Table S742.  Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LMAN1 MUTATED 2 5 2 0 1
LMAN1 WILD-TYPE 37 91 42 88 79
'LMAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.47

Table S743.  Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LMAN1 MUTATED 0 5 1 1 2
LMAN1 WILD-TYPE 26 74 72 81 56
'LMAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00148 (Fisher's exact test), Q value = 0.02

Table S744.  Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LMAN1 MUTATED 0 5 3 1
LMAN1 WILD-TYPE 127 46 68 68

Figure S413.  Get High-res Image Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S745.  Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LMAN1 MUTATED 0 2 5 3 2
LMAN1 WILD-TYPE 84 83 80 66 45
'LMAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00219 (Fisher's exact test), Q value = 0.024

Table S746.  Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LMAN1 MUTATED 4 1 0 7
LMAN1 WILD-TYPE 91 73 121 73

Figure S414.  Get High-res Image Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S747.  Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LMAN1 MUTATED 3 4 4 1 1 0
LMAN1 WILD-TYPE 49 60 68 103 39 59
'LMAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.073

Table S748.  Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LMAN1 MUTATED 12 1 0
LMAN1 WILD-TYPE 205 74 99

Figure S415.  Get High-res Image Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0392 (Fisher's exact test), Q value = 0.12

Table S749.  Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LMAN1 MUTATED 6 0 3
LMAN1 WILD-TYPE 115 108 69

Figure S416.  Get High-res Image Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'LMAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0197 (Fisher's exact test), Q value = 0.083

Table S750.  Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LMAN1 MUTATED 3 1 0 0 5
LMAN1 WILD-TYPE 85 65 45 55 42

Figure S417.  Get High-res Image Gene #75: 'LMAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM116A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0492 (Fisher's exact test), Q value = 0.14

Table S751.  Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM116A MUTATED 1 6 2 0
FAM116A WILD-TYPE 203 131 45 3

Figure S418.  Get High-res Image Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM116A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.17

Table S752.  Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM116A MUTATED 2 3 1 0 0
FAM116A WILD-TYPE 37 93 43 88 80
'FAM116A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S753.  Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM116A MUTATED 0 3 4 0 2
FAM116A WILD-TYPE 26 76 69 82 56
'FAM116A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S754.  Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM116A MUTATED 3 5 1 0
FAM116A WILD-TYPE 124 46 70 69

Figure S419.  Get High-res Image Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM116A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S755.  Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM116A MUTATED 0 1 4 2 2
FAM116A WILD-TYPE 84 84 81 67 45
'FAM116A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 0.17

Table S756.  Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM116A MUTATED 3 2 0 4
FAM116A WILD-TYPE 92 72 121 76
'FAM116A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.13

Table S757.  Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM116A MUTATED 3 3 0 1 2 0
FAM116A WILD-TYPE 49 61 72 103 38 59

Figure S420.  Get High-res Image Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM116A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.68

Table S758.  Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM116A MUTATED 7 1 1
FAM116A WILD-TYPE 210 74 98
'FAM116A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.43

Table S759.  Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM116A MUTATED 4 1 0
FAM116A WILD-TYPE 117 107 72
'FAM116A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.63

Table S760.  Gene #76: 'FAM116A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM116A MUTATED 2 1 0 0 2
FAM116A WILD-TYPE 86 65 45 55 45
'KIAA0664 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.0084

Table S761.  Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA0664 MUTATED 3 17 3 0
KIAA0664 WILD-TYPE 201 120 44 3

Figure S421.  Get High-res Image Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0664 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00335 (Fisher's exact test), Q value = 0.031

Table S762.  Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA0664 MUTATED 2 12 3 1 1
KIAA0664 WILD-TYPE 37 84 41 87 79

Figure S422.  Get High-res Image Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0664 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S763.  Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA0664 MUTATED 2 5 8 1 4
KIAA0664 WILD-TYPE 24 74 65 81 54
'KIAA0664 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S764.  Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA0664 MUTATED 3 14 1 2
KIAA0664 WILD-TYPE 124 37 70 67

Figure S423.  Get High-res Image Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0664 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S765.  Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA0664 MUTATED 1 5 9 3 2
KIAA0664 WILD-TYPE 83 80 76 66 45
'KIAA0664 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S766.  Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA0664 MUTATED 6 3 3 8
KIAA0664 WILD-TYPE 89 71 118 72
'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00389 (Fisher's exact test), Q value = 0.034

Table S767.  Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA0664 MUTATED 5 9 5 2 2 0
KIAA0664 WILD-TYPE 47 55 67 102 38 59

Figure S424.  Get High-res Image Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.032 (Fisher's exact test), Q value = 0.11

Table S768.  Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA0664 MUTATED 19 2 2
KIAA0664 WILD-TYPE 198 73 97

Figure S425.  Get High-res Image Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.062

Table S769.  Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA0664 MUTATED 6 2 9
KIAA0664 WILD-TYPE 115 106 63

Figure S426.  Get High-res Image Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA0664 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.06

Table S770.  Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA0664 MUTATED 4 2 4 0 7
KIAA0664 WILD-TYPE 84 64 41 55 40

Figure S427.  Get High-res Image Gene #77: 'KIAA0664 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S771.  Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
JARID2 MUTATED 5 27 3 1
JARID2 WILD-TYPE 199 110 44 2

Figure S428.  Get High-res Image Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'JARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S772.  Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
JARID2 MUTATED 3 19 3 2 2
JARID2 WILD-TYPE 36 77 41 86 78

Figure S429.  Get High-res Image Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.066

Table S773.  Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
JARID2 MUTATED 1 12 7 1 5
JARID2 WILD-TYPE 25 67 66 81 53

Figure S430.  Get High-res Image Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'JARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S774.  Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
JARID2 MUTATED 5 12 8 1
JARID2 WILD-TYPE 122 39 63 68

Figure S431.  Get High-res Image Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S775.  Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
JARID2 MUTATED 0 3 20 7 5
JARID2 WILD-TYPE 84 82 65 62 42

Figure S432.  Get High-res Image Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'JARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S776.  Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
JARID2 MUTATED 13 2 2 18
JARID2 WILD-TYPE 82 72 119 62

Figure S433.  Get High-res Image Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S777.  Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
JARID2 MUTATED 10 13 7 4 2 0
JARID2 WILD-TYPE 42 51 65 100 38 59

Figure S434.  Get High-res Image Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.0081

Table S778.  Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
JARID2 MUTATED 31 2 3
JARID2 WILD-TYPE 186 73 96

Figure S435.  Get High-res Image Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'JARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S779.  Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
JARID2 MUTATED 13 5 8
JARID2 WILD-TYPE 108 103 64
'JARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0044

Table S780.  Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
JARID2 MUTATED 7 1 5 1 12
JARID2 WILD-TYPE 81 65 40 54 35

Figure S436.  Get High-res Image Gene #78: 'JARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC9A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.0082

Table S781.  Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC9A10 MUTATED 1 12 0 0
SLC9A10 WILD-TYPE 203 125 47 3

Figure S437.  Get High-res Image Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC9A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S782.  Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC9A10 MUTATED 1 7 2 1 2
SLC9A10 WILD-TYPE 38 89 42 87 78
'SLC9A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 0.75

Table S783.  Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC9A10 MUTATED 1 3 3 1 3
SLC9A10 WILD-TYPE 25 76 70 81 55
'SLC9A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00547 (Fisher's exact test), Q value = 0.041

Table S784.  Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC9A10 MUTATED 1 6 2 2
SLC9A10 WILD-TYPE 126 45 69 67

Figure S438.  Get High-res Image Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC9A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00237 (Fisher's exact test), Q value = 0.025

Table S785.  Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC9A10 MUTATED 0 2 8 0 2
SLC9A10 WILD-TYPE 84 83 77 69 45

Figure S439.  Get High-res Image Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC9A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S786.  Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC9A10 MUTATED 2 2 2 6
SLC9A10 WILD-TYPE 93 72 119 74
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.058

Table S787.  Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC9A10 MUTATED 3 5 2 0 2 0
SLC9A10 WILD-TYPE 49 59 70 104 38 59

Figure S440.  Get High-res Image Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S788.  Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC9A10 MUTATED 9 2 1
SLC9A10 WILD-TYPE 208 73 98
'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S789.  Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC9A10 MUTATED 4 1 7
SLC9A10 WILD-TYPE 117 107 65

Figure S441.  Get High-res Image Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC9A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.093

Table S790.  Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC9A10 MUTATED 5 0 3 0 4
SLC9A10 WILD-TYPE 83 66 42 55 43

Figure S442.  Get High-res Image Gene #79: 'SLC9A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S791.  Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZFP36L2 MUTATED 4 9 1 0
ZFP36L2 WILD-TYPE 200 128 46 3
'ZFP36L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.065

Table S792.  Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZFP36L2 MUTATED 1 9 0 1 1
ZFP36L2 WILD-TYPE 38 87 44 87 79

Figure S443.  Get High-res Image Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFP36L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 0.83

Table S793.  Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZFP36L2 MUTATED 1 3 3 1 2
ZFP36L2 WILD-TYPE 25 76 70 81 56
'ZFP36L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.091

Table S794.  Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZFP36L2 MUTATED 3 5 0 2
ZFP36L2 WILD-TYPE 124 46 71 67

Figure S444.  Get High-res Image Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S795.  Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZFP36L2 MUTATED 3 3 4 3 1
ZFP36L2 WILD-TYPE 81 82 81 66 46
'ZFP36L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.65

Table S796.  Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZFP36L2 MUTATED 4 2 3 5
ZFP36L2 WILD-TYPE 91 72 118 75
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.46

Table S797.  Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZFP36L2 MUTATED 5 1 2 4 1 1
ZFP36L2 WILD-TYPE 47 63 70 100 39 58
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.434 (Fisher's exact test), Q value = 0.55

Table S798.  Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZFP36L2 MUTATED 10 1 3
ZFP36L2 WILD-TYPE 207 74 96
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S799.  Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZFP36L2 MUTATED 6 2 1
ZFP36L2 WILD-TYPE 115 106 71
'ZFP36L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.081

Table S800.  Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZFP36L2 MUTATED 3 1 0 0 5
ZFP36L2 WILD-TYPE 85 65 45 55 42

Figure S445.  Get High-res Image Gene #80: 'ZFP36L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0041

Table S801.  Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CTCF MUTATED 1 14 1 0
CTCF WILD-TYPE 203 123 46 3

Figure S446.  Get High-res Image Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTCF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0845 (Fisher's exact test), Q value = 0.2

Table S802.  Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CTCF MUTATED 2 6 3 0 4
CTCF WILD-TYPE 37 90 41 88 76
'CTCF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.66

Table S803.  Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CTCF MUTATED 1 3 1 4 4
CTCF WILD-TYPE 25 76 72 78 54
'CTCF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S804.  Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CTCF MUTATED 3 4 2 4
CTCF WILD-TYPE 124 47 69 65
'CTCF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00127 (Fisher's exact test), Q value = 0.018

Table S805.  Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CTCF MUTATED 0 5 9 0 2
CTCF WILD-TYPE 84 80 76 69 45

Figure S447.  Get High-res Image Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTCF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00965 (Fisher's exact test), Q value = 0.056

Table S806.  Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CTCF MUTATED 1 3 3 9
CTCF WILD-TYPE 94 71 118 71

Figure S448.  Get High-res Image Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTCF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.19

Table S807.  Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CTCF MUTATED 5 4 2 5 0 0
CTCF WILD-TYPE 47 60 70 99 40 59
'CTCF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S808.  Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CTCF MUTATED 10 5 1
CTCF WILD-TYPE 207 70 98
'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 0.97

Table S809.  Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CTCF MUTATED 6 4 3
CTCF WILD-TYPE 115 104 69
'CTCF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.41

Table S810.  Gene #81: 'CTCF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CTCF MUTATED 6 2 2 0 3
CTCF WILD-TYPE 82 64 43 55 44
'HDAC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S811.  Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HDAC4 MUTATED 2 20 4 0
HDAC4 WILD-TYPE 202 117 43 3

Figure S449.  Get High-res Image Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HDAC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S812.  Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HDAC4 MUTATED 3 19 1 1 0
HDAC4 WILD-TYPE 36 77 43 87 80

Figure S450.  Get High-res Image Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HDAC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00217 (Fisher's exact test), Q value = 0.024

Table S813.  Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HDAC4 MUTATED 0 8 9 0 6
HDAC4 WILD-TYPE 26 71 64 82 52

Figure S451.  Get High-res Image Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HDAC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S814.  Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HDAC4 MUTATED 4 15 4 0
HDAC4 WILD-TYPE 123 36 67 69

Figure S452.  Get High-res Image Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0075

Table S815.  Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HDAC4 MUTATED 1 2 14 3 5
HDAC4 WILD-TYPE 83 83 71 66 42

Figure S453.  Get High-res Image Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HDAC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S816.  Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HDAC4 MUTATED 4 2 1 18
HDAC4 WILD-TYPE 91 72 120 62

Figure S454.  Get High-res Image Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0174 (Fisher's exact test), Q value = 0.078

Table S817.  Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HDAC4 MUTATED 9 6 5 4 1 1
HDAC4 WILD-TYPE 43 58 67 100 39 58

Figure S455.  Get High-res Image Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S818.  Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HDAC4 MUTATED 24 1 1
HDAC4 WILD-TYPE 193 74 98

Figure S456.  Get High-res Image Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S819.  Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HDAC4 MUTATED 10 2 9
HDAC4 WILD-TYPE 111 106 63

Figure S457.  Get High-res Image Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HDAC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S820.  Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HDAC4 MUTATED 4 1 3 1 12
HDAC4 WILD-TYPE 84 65 42 54 35

Figure S458.  Get High-res Image Gene #82: 'HDAC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NAPEPLD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S821.  Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NAPEPLD MUTATED 1 8 1 0
NAPEPLD WILD-TYPE 203 129 46 3

Figure S459.  Get High-res Image Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NAPEPLD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.21

Table S822.  Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NAPEPLD MUTATED 2 5 0 0 2
NAPEPLD WILD-TYPE 37 91 44 88 78
'NAPEPLD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 0.94

Table S823.  Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NAPEPLD MUTATED 1 3 3 2 1
NAPEPLD WILD-TYPE 25 76 70 80 57
'NAPEPLD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S824.  Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NAPEPLD MUTATED 2 3 3 2
NAPEPLD WILD-TYPE 125 48 68 67
'NAPEPLD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.11

Table S825.  Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NAPEPLD MUTATED 0 1 6 1 2
NAPEPLD WILD-TYPE 84 84 79 68 45

Figure S460.  Get High-res Image Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NAPEPLD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.26

Table S826.  Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NAPEPLD MUTATED 2 2 1 5
NAPEPLD WILD-TYPE 93 72 120 75
'NAPEPLD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S827.  Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NAPEPLD MUTATED 2 4 0 3 1 0
NAPEPLD WILD-TYPE 50 60 72 101 39 59
'NAPEPLD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S828.  Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NAPEPLD MUTATED 7 3 0
NAPEPLD WILD-TYPE 210 72 99
'NAPEPLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.16

Table S829.  Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NAPEPLD MUTATED 2 1 5
NAPEPLD WILD-TYPE 119 107 67
'NAPEPLD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S830.  Gene #83: 'NAPEPLD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NAPEPLD MUTATED 2 1 3 0 2
NAPEPLD WILD-TYPE 86 65 42 55 45
'RASA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.1

Table S831.  Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RASA1 MUTATED 4 11 4 0
RASA1 WILD-TYPE 200 126 43 3

Figure S461.  Get High-res Image Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RASA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S832.  Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RASA1 MUTATED 2 4 3 2 2
RASA1 WILD-TYPE 37 92 41 86 78
'RASA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.16

Table S833.  Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RASA1 MUTATED 3 4 2 2 7
RASA1 WILD-TYPE 23 75 71 80 51
'RASA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S834.  Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RASA1 MUTATED 7 6 3 2
RASA1 WILD-TYPE 120 45 68 67
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.15

Table S835.  Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RASA1 MUTATED 1 2 5 7 4
RASA1 WILD-TYPE 83 83 80 62 43
'RASA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00408 (Fisher's exact test), Q value = 0.034

Table S836.  Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RASA1 MUTATED 11 1 2 5
RASA1 WILD-TYPE 84 73 119 75

Figure S462.  Get High-res Image Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00586 (Fisher's exact test), Q value = 0.042

Table S837.  Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RASA1 MUTATED 3 8 2 1 4 1
RASA1 WILD-TYPE 49 56 70 103 36 58

Figure S463.  Get High-res Image Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RASA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.33

Table S838.  Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RASA1 MUTATED 14 1 4
RASA1 WILD-TYPE 203 74 95
'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S839.  Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RASA1 MUTATED 4 3 6
RASA1 WILD-TYPE 117 105 66
'RASA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0165 (Fisher's exact test), Q value = 0.075

Table S840.  Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RASA1 MUTATED 6 0 4 0 3
RASA1 WILD-TYPE 82 66 41 55 44

Figure S464.  Get High-res Image Gene #84: 'RASA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RHOQ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.11

Table S841.  Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RHOQ MUTATED 0 5 0 0
RHOQ WILD-TYPE 204 132 47 3

Figure S465.  Get High-res Image Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RHOQ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.32

Table S842.  Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RHOQ MUTATED 0 3 0 0 0
RHOQ WILD-TYPE 39 93 44 88 80
'RHOQ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S843.  Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RHOQ MUTATED 0 0 0 1 2
RHOQ WILD-TYPE 26 79 73 81 56
'RHOQ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.68

Table S844.  Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RHOQ MUTATED 1 1 0 1
RHOQ WILD-TYPE 126 50 71 68
'RHOQ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.64

Table S845.  Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RHOQ MUTATED 0 1 2 2 0
RHOQ WILD-TYPE 84 84 83 67 47
'RHOQ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S846.  Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RHOQ MUTATED 2 1 0 2
RHOQ WILD-TYPE 93 73 121 78
'RHOQ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S847.  Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RHOQ MUTATED 2 2 1 0 0 0
RHOQ WILD-TYPE 50 62 71 104 40 59
'RHOQ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S848.  Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RHOQ MUTATED 4 0 1
RHOQ WILD-TYPE 213 75 98
'RHOQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.32

Table S849.  Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RHOQ MUTATED 3 0 0
RHOQ WILD-TYPE 118 108 72
'RHOQ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00705 (Fisher's exact test), Q value = 0.046

Table S850.  Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RHOQ MUTATED 0 0 0 0 3
RHOQ WILD-TYPE 88 66 45 55 44

Figure S466.  Get High-res Image Gene #85: 'RHOQ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NT5M MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S851.  Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NT5M MUTATED 1 5 0 0
NT5M WILD-TYPE 203 132 47 3
'NT5M MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S852.  Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NT5M MUTATED 0 3 1 0 0
NT5M WILD-TYPE 39 93 43 88 80
'NT5M MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S853.  Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NT5M MUTATED 0 0 0 1 2
NT5M WILD-TYPE 26 79 73 81 56
'NT5M MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.13

Table S854.  Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NT5M MUTATED 0 2 0 1
NT5M WILD-TYPE 127 49 71 68

Figure S467.  Get High-res Image Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NT5M MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 0.53

Table S855.  Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NT5M MUTATED 0 2 2 0 1
NT5M WILD-TYPE 84 83 83 69 46
'NT5M MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00777 (Fisher's exact test), Q value = 0.049

Table S856.  Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NT5M MUTATED 0 1 0 4
NT5M WILD-TYPE 95 73 121 76

Figure S468.  Get High-res Image Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NT5M MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00554 (Fisher's exact test), Q value = 0.041

Table S857.  Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NT5M MUTATED 3 3 0 0 0 0
NT5M WILD-TYPE 49 61 72 104 40 59

Figure S469.  Get High-res Image Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NT5M MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S858.  Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NT5M MUTATED 6 0 0
NT5M WILD-TYPE 211 75 99
'NT5M MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.2

Table S859.  Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NT5M MUTATED 4 0 0
NT5M WILD-TYPE 117 108 72
'NT5M MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.35

Table S860.  Gene #86: 'NT5M MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NT5M MUTATED 2 0 0 0 2
NT5M WILD-TYPE 86 66 45 55 45
'CELSR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S861.  Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CELSR1 MUTATED 5 29 3 0
CELSR1 WILD-TYPE 199 108 44 3

Figure S470.  Get High-res Image Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CELSR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.0087

Table S862.  Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CELSR1 MUTATED 3 17 6 2 2
CELSR1 WILD-TYPE 36 79 38 86 78

Figure S471.  Get High-res Image Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CELSR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S863.  Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CELSR1 MUTATED 3 8 11 3 6
CELSR1 WILD-TYPE 23 71 62 79 52
'CELSR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.058

Table S864.  Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CELSR1 MUTATED 12 11 6 2
CELSR1 WILD-TYPE 115 40 65 67

Figure S472.  Get High-res Image Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.073

Table S865.  Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CELSR1 MUTATED 2 7 15 6 5
CELSR1 WILD-TYPE 82 78 70 63 42

Figure S473.  Get High-res Image Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CELSR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00213 (Fisher's exact test), Q value = 0.024

Table S866.  Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CELSR1 MUTATED 11 7 3 14
CELSR1 WILD-TYPE 84 67 118 66

Figure S474.  Get High-res Image Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 0.13

Table S867.  Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CELSR1 MUTATED 6 13 5 8 3 2
CELSR1 WILD-TYPE 46 51 67 96 37 57

Figure S475.  Get High-res Image Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S868.  Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CELSR1 MUTATED 26 4 7
CELSR1 WILD-TYPE 191 71 92
'CELSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.13

Table S869.  Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CELSR1 MUTATED 10 5 11
CELSR1 WILD-TYPE 111 103 61

Figure S476.  Get High-res Image Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CELSR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S870.  Gene #87: 'CELSR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CELSR1 MUTATED 9 3 6 2 6
CELSR1 WILD-TYPE 79 63 39 53 41
'YIPF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S871.  Gene #88: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
YIPF2 MUTATED 2 3 2 0
YIPF2 WILD-TYPE 202 134 45 3
'YIPF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.52

Table S872.  Gene #88: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
YIPF2 MUTATED 1 3 0 1 0
YIPF2 WILD-TYPE 38 93 44 87 80
'YIPF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 0.81

Table S873.  Gene #88: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
YIPF2 MUTATED 1 1 2 1 1
YIPF2 WILD-TYPE 25 78 71 81 57
'YIPF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S874.  Gene #88: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
YIPF2 MUTATED 2 3 0 1
YIPF2 WILD-TYPE 125 48 71 68
'YIPF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.19

Table S875.  Gene #88: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
YIPF2 MUTATED 0 0 3 1 2
YIPF2 WILD-TYPE 84 85 82 68 45
'YIPF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S876.  Gene #88: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
YIPF2 MUTATED 2 1 0 3
YIPF2 WILD-TYPE 93 73 121 77
'YIPF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S877.  Gene #88: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
YIPF2 MUTATED 3 2 0 1 1 0
YIPF2 WILD-TYPE 49 62 72 103 39 59
'YIPF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.62

Table S878.  Gene #88: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
YIPF2 MUTATED 5 0 2
YIPF2 WILD-TYPE 212 75 97
'YIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S879.  Gene #88: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
YIPF2 MUTATED 2 1 0
YIPF2 WILD-TYPE 119 107 72
'YIPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.756 (Fisher's exact test), Q value = 0.82

Table S880.  Gene #88: 'YIPF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
YIPF2 MUTATED 1 0 0 1 1
YIPF2 WILD-TYPE 87 66 45 54 46
'CR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00354 (Fisher's exact test), Q value = 0.032

Table S881.  Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CR1 MUTATED 7 19 4 0
CR1 WILD-TYPE 197 118 43 3

Figure S477.  Get High-res Image Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00371 (Fisher's exact test), Q value = 0.033

Table S882.  Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CR1 MUTATED 2 11 7 1 3
CR1 WILD-TYPE 37 85 37 87 77

Figure S478.  Get High-res Image Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.039

Table S883.  Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CR1 MUTATED 1 15 5 2 4
CR1 WILD-TYPE 25 64 68 80 54

Figure S479.  Get High-res Image Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S884.  Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CR1 MUTATED 5 9 9 4
CR1 WILD-TYPE 122 42 62 65

Figure S480.  Get High-res Image Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00228 (Fisher's exact test), Q value = 0.025

Table S885.  Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CR1 MUTATED 1 6 15 4 3
CR1 WILD-TYPE 83 79 70 65 44

Figure S481.  Get High-res Image Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00176 (Fisher's exact test), Q value = 0.022

Table S886.  Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CR1 MUTATED 8 4 3 14
CR1 WILD-TYPE 87 70 118 66

Figure S482.  Get High-res Image Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0449 (Fisher's exact test), Q value = 0.13

Table S887.  Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CR1 MUTATED 6 8 7 6 3 0
CR1 WILD-TYPE 46 56 65 98 37 59

Figure S483.  Get High-res Image Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00155 (Fisher's exact test), Q value = 0.02

Table S888.  Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CR1 MUTATED 25 4 1
CR1 WILD-TYPE 192 71 98

Figure S484.  Get High-res Image Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.38

Table S889.  Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CR1 MUTATED 8 4 7
CR1 WILD-TYPE 113 104 65
'CR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S890.  Gene #89: 'CR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CR1 MUTATED 10 2 3 1 3
CR1 WILD-TYPE 78 64 42 54 44
'C19ORF40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.49

Table S891.  Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C19ORF40 MUTATED 2 4 1 0
C19ORF40 WILD-TYPE 202 133 46 3
'C19ORF40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.86

Table S892.  Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C19ORF40 MUTATED 1 1 0 1 1
C19ORF40 WILD-TYPE 38 95 44 87 79
'C19ORF40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0248 (Fisher's exact test), Q value = 0.096

Table S893.  Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C19ORF40 MUTATED 2 4 1 0 0
C19ORF40 WILD-TYPE 24 75 72 82 58

Figure S485.  Get High-res Image Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C19ORF40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S894.  Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C19ORF40 MUTATED 2 3 2 0
C19ORF40 WILD-TYPE 125 48 69 69
'C19ORF40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S895.  Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C19ORF40 MUTATED 0 1 2 1 2
C19ORF40 WILD-TYPE 84 84 83 68 45
'C19ORF40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 0.86

Table S896.  Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C19ORF40 MUTATED 2 1 1 2
C19ORF40 WILD-TYPE 93 73 120 78
'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S897.  Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C19ORF40 MUTATED 1 4 0 0 1 0
C19ORF40 WILD-TYPE 51 60 72 104 39 59

Figure S486.  Get High-res Image Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S898.  Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C19ORF40 MUTATED 6 0 0
C19ORF40 WILD-TYPE 211 75 99
'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.57

Table S899.  Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C19ORF40 MUTATED 2 0 1
C19ORF40 WILD-TYPE 119 108 71
'C19ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.13

Table S900.  Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C19ORF40 MUTATED 0 0 1 0 2
C19ORF40 WILD-TYPE 88 66 44 55 45

Figure S487.  Get High-res Image Gene #90: 'C19ORF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0923 (Fisher's exact test), Q value = 0.21

Table S901.  Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WNT1 MUTATED 2 7 0 0
WNT1 WILD-TYPE 202 130 47 3
'WNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.18

Table S902.  Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WNT1 MUTATED 1 6 2 1 0
WNT1 WILD-TYPE 38 90 42 87 80
'WNT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S903.  Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WNT1 MUTATED 1 1 3 0 1
WNT1 WILD-TYPE 25 78 70 82 57
'WNT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S904.  Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WNT1 MUTATED 3 1 1 1
WNT1 WILD-TYPE 124 50 70 68
'WNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S905.  Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WNT1 MUTATED 0 2 4 3 1
WNT1 WILD-TYPE 84 83 81 66 46
'WNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00667 (Fisher's exact test), Q value = 0.045

Table S906.  Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WNT1 MUTATED 3 1 0 6
WNT1 WILD-TYPE 92 73 121 74

Figure S488.  Get High-res Image Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.071

Table S907.  Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WNT1 MUTATED 5 2 1 0 1 1
WNT1 WILD-TYPE 47 62 71 104 39 58

Figure S489.  Get High-res Image Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S908.  Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WNT1 MUTATED 8 0 2
WNT1 WILD-TYPE 209 75 97
'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.12

Table S909.  Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WNT1 MUTATED 6 0 3
WNT1 WILD-TYPE 115 108 69

Figure S490.  Get High-res Image Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.13

Table S910.  Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WNT1 MUTATED 3 0 2 0 4
WNT1 WILD-TYPE 85 66 43 55 43

Figure S491.  Get High-res Image Gene #91: 'WNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IRF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.015

Table S911.  Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IRF2 MUTATED 4 15 0 0
IRF2 WILD-TYPE 200 122 47 3

Figure S492.  Get High-res Image Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IRF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.49

Table S912.  Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IRF2 MUTATED 1 5 4 2 2
IRF2 WILD-TYPE 38 91 40 86 78
'IRF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.2

Table S913.  Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IRF2 MUTATED 1 10 2 3 2
IRF2 WILD-TYPE 25 69 71 79 56
'IRF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S914.  Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IRF2 MUTATED 3 7 6 2
IRF2 WILD-TYPE 124 44 65 67

Figure S493.  Get High-res Image Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IRF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.15

Table S915.  Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IRF2 MUTATED 1 3 8 3 0
IRF2 WILD-TYPE 83 82 77 66 47
'IRF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S916.  Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IRF2 MUTATED 5 4 1 5
IRF2 WILD-TYPE 90 70 120 75
'IRF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00441 (Fisher's exact test), Q value = 0.036

Table S917.  Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IRF2 MUTATED 2 9 5 2 1 0
IRF2 WILD-TYPE 50 55 67 102 39 59

Figure S494.  Get High-res Image Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IRF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00103 (Fisher's exact test), Q value = 0.016

Table S918.  Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IRF2 MUTATED 18 1 0
IRF2 WILD-TYPE 199 74 99

Figure S495.  Get High-res Image Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S919.  Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IRF2 MUTATED 5 2 6
IRF2 WILD-TYPE 116 106 66
'IRF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0953 (Fisher's exact test), Q value = 0.21

Table S920.  Gene #92: 'IRF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IRF2 MUTATED 5 1 4 0 3
IRF2 WILD-TYPE 83 65 41 55 44
'CR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.1

Table S921.  Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CR2 MUTATED 7 15 1 0
CR2 WILD-TYPE 197 122 46 3

Figure S496.  Get High-res Image Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S922.  Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CR2 MUTATED 3 10 4 3 2
CR2 WILD-TYPE 36 86 40 85 78
'CR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.1

Table S923.  Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CR2 MUTATED 1 8 5 0 4
CR2 WILD-TYPE 25 71 68 82 54

Figure S497.  Get High-res Image Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.014

Table S924.  Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CR2 MUTATED 4 8 6 0
CR2 WILD-TYPE 123 43 65 69

Figure S498.  Get High-res Image Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00154 (Fisher's exact test), Q value = 0.02

Table S925.  Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CR2 MUTATED 2 1 13 4 2
CR2 WILD-TYPE 82 84 72 65 45

Figure S499.  Get High-res Image Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00742 (Fisher's exact test), Q value = 0.048

Table S926.  Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CR2 MUTATED 6 1 4 11
CR2 WILD-TYPE 89 73 117 69

Figure S500.  Get High-res Image Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S927.  Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CR2 MUTATED 10 6 4 0 1 2
CR2 WILD-TYPE 42 58 68 104 39 57

Figure S501.  Get High-res Image Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00607 (Fisher's exact test), Q value = 0.043

Table S928.  Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CR2 MUTATED 20 1 2
CR2 WILD-TYPE 197 74 97

Figure S502.  Get High-res Image Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.11

Table S929.  Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CR2 MUTATED 12 2 4
CR2 WILD-TYPE 109 106 68

Figure S503.  Get High-res Image Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00475 (Fisher's exact test), Q value = 0.037

Table S930.  Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CR2 MUTATED 6 0 4 1 7
CR2 WILD-TYPE 82 66 41 54 40

Figure S504.  Get High-res Image Gene #93: 'CR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LEMD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S931.  Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LEMD1 MUTATED 0 2 1 0
LEMD1 WILD-TYPE 204 135 46 3
'LEMD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.18

Table S932.  Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LEMD1 MUTATED 0 4 0 0 0
LEMD1 WILD-TYPE 39 92 44 88 80
'LEMD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 0.84

Table S933.  Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LEMD1 MUTATED 0 1 1 0 1
LEMD1 WILD-TYPE 26 78 72 82 57
'LEMD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00392 (Fisher's exact test), Q value = 0.034

Table S934.  Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LEMD1 MUTATED 0 3 0 0
LEMD1 WILD-TYPE 127 48 71 69

Figure S505.  Get High-res Image Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0862 (Fisher's exact test), Q value = 0.2

Table S935.  Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LEMD1 MUTATED 0 0 3 0 0
LEMD1 WILD-TYPE 84 85 82 69 47
'LEMD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.32

Table S936.  Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LEMD1 MUTATED 1 0 0 2
LEMD1 WILD-TYPE 94 74 121 78
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S937.  Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LEMD1 MUTATED 1 1 2 0 0 0
LEMD1 WILD-TYPE 51 63 70 104 40 59
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S938.  Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LEMD1 MUTATED 4 0 0
LEMD1 WILD-TYPE 213 75 99
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.16

Table S939.  Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LEMD1 MUTATED 1 0 3
LEMD1 WILD-TYPE 120 108 69
'LEMD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00862 (Fisher's exact test), Q value = 0.052

Table S940.  Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LEMD1 MUTATED 0 0 1 0 3
LEMD1 WILD-TYPE 88 66 44 55 44

Figure S506.  Get High-res Image Gene #94: 'LEMD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'INF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00551 (Fisher's exact test), Q value = 0.041

Table S941.  Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
INF2 MUTATED 3 13 3 0
INF2 WILD-TYPE 201 124 44 3

Figure S507.  Get High-res Image Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.11

Table S942.  Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
INF2 MUTATED 2 10 1 1 2
INF2 WILD-TYPE 37 86 43 87 78

Figure S508.  Get High-res Image Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'INF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.081

Table S943.  Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
INF2 MUTATED 3 4 1 1 6
INF2 WILD-TYPE 23 75 72 81 52

Figure S509.  Get High-res Image Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'INF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.45

Table S944.  Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
INF2 MUTATED 6 5 2 2
INF2 WILD-TYPE 121 46 69 67
'INF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S945.  Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
INF2 MUTATED 3 2 9 3 2
INF2 WILD-TYPE 81 83 76 66 45
'INF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.13

Table S946.  Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
INF2 MUTATED 5 1 4 9
INF2 WILD-TYPE 90 73 117 71

Figure S510.  Get High-res Image Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'INF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S947.  Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
INF2 MUTATED 4 6 4 1 2 2
INF2 WILD-TYPE 48 58 68 103 38 57
'INF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.49

Table S948.  Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
INF2 MUTATED 14 2 3
INF2 WILD-TYPE 203 73 96
'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S949.  Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
INF2 MUTATED 6 2 5
INF2 WILD-TYPE 115 106 67
'INF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.079

Table S950.  Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
INF2 MUTATED 3 0 4 1 5
INF2 WILD-TYPE 85 66 41 54 42

Figure S511.  Get High-res Image Gene #95: 'INF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CR1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S951.  Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CR1L MUTATED 7 9 0 0
CR1L WILD-TYPE 197 128 47 3
'CR1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S952.  Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CR1L MUTATED 0 6 3 2 3
CR1L WILD-TYPE 39 90 41 86 77
'CR1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S953.  Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CR1L MUTATED 1 4 4 3 2
CR1L WILD-TYPE 25 75 69 79 56
'CR1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 0.89

Table S954.  Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CR1L MUTATED 6 3 2 3
CR1L WILD-TYPE 121 48 69 66
'CR1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.54

Table S955.  Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CR1L MUTATED 2 3 7 3 1
CR1L WILD-TYPE 82 82 78 66 46
'CR1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 0.78

Table S956.  Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CR1L MUTATED 4 5 4 3
CR1L WILD-TYPE 91 69 117 77
'CR1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00422 (Fisher's exact test), Q value = 0.035

Table S957.  Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CR1L MUTATED 4 7 0 1 2 2
CR1L WILD-TYPE 48 57 72 103 38 57

Figure S512.  Get High-res Image Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CR1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 0.97

Table S958.  Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CR1L MUTATED 10 3 3
CR1L WILD-TYPE 207 72 96
'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00943 (Fisher's exact test), Q value = 0.055

Table S959.  Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CR1L MUTATED 1 3 7
CR1L WILD-TYPE 120 105 65

Figure S513.  Get High-res Image Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CR1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S960.  Gene #96: 'CR1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CR1L MUTATED 2 2 4 1 2
CR1L WILD-TYPE 86 64 41 54 45
'NPHP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0072

Table S961.  Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NPHP1 MUTATED 0 8 1 1
NPHP1 WILD-TYPE 204 129 46 2

Figure S514.  Get High-res Image Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NPHP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.34

Table S962.  Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NPHP1 MUTATED 0 3 2 0 1
NPHP1 WILD-TYPE 39 93 42 88 79
'NPHP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S963.  Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NPHP1 MUTATED 0 3 0 1 2
NPHP1 WILD-TYPE 26 76 73 81 56
'NPHP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.53

Table S964.  Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NPHP1 MUTATED 1 2 2 1
NPHP1 WILD-TYPE 126 49 69 68
'NPHP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S965.  Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NPHP1 MUTATED 0 1 5 2 1
NPHP1 WILD-TYPE 84 84 80 67 46
'NPHP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S966.  Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NPHP1 MUTATED 2 1 1 5
NPHP1 WILD-TYPE 93 73 120 75
'NPHP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0517 (Fisher's exact test), Q value = 0.15

Table S967.  Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NPHP1 MUTATED 1 5 3 1 0 0
NPHP1 WILD-TYPE 51 59 69 103 40 59
'NPHP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0891 (Fisher's exact test), Q value = 0.2

Table S968.  Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NPHP1 MUTATED 9 0 1
NPHP1 WILD-TYPE 208 75 98
'NPHP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S969.  Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NPHP1 MUTATED 3 1 0
NPHP1 WILD-TYPE 118 107 72
'NPHP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.36

Table S970.  Gene #97: 'NPHP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NPHP1 MUTATED 2 0 0 0 2
NPHP1 WILD-TYPE 86 66 45 55 45
'ADAMDEC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S971.  Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ADAMDEC1 MUTATED 0 12 0 0
ADAMDEC1 WILD-TYPE 204 125 47 3

Figure S515.  Get High-res Image Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADAMDEC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.078 (Fisher's exact test), Q value = 0.19

Table S972.  Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ADAMDEC1 MUTATED 1 6 1 0 1
ADAMDEC1 WILD-TYPE 38 90 43 88 79
'ADAMDEC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 0.2

Table S973.  Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ADAMDEC1 MUTATED 2 2 4 0 3
ADAMDEC1 WILD-TYPE 24 77 69 82 55
'ADAMDEC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0324 (Fisher's exact test), Q value = 0.11

Table S974.  Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ADAMDEC1 MUTATED 4 5 2 0
ADAMDEC1 WILD-TYPE 123 46 69 69

Figure S516.  Get High-res Image Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADAMDEC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 0.21

Table S975.  Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ADAMDEC1 MUTATED 1 2 5 0 3
ADAMDEC1 WILD-TYPE 83 83 80 69 44
'ADAMDEC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0497 (Fisher's exact test), Q value = 0.14

Table S976.  Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ADAMDEC1 MUTATED 3 1 1 6
ADAMDEC1 WILD-TYPE 92 73 120 74

Figure S517.  Get High-res Image Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADAMDEC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S977.  Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ADAMDEC1 MUTATED 4 3 2 2 0 1
ADAMDEC1 WILD-TYPE 48 61 70 102 40 58
'ADAMDEC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.44

Table S978.  Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ADAMDEC1 MUTATED 9 2 1
ADAMDEC1 WILD-TYPE 208 73 98
'ADAMDEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.42

Table S979.  Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ADAMDEC1 MUTATED 5 1 3
ADAMDEC1 WILD-TYPE 116 107 69
'ADAMDEC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S980.  Gene #98: 'ADAMDEC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ADAMDEC1 MUTATED 2 2 1 0 4
ADAMDEC1 WILD-TYPE 86 64 44 55 43
'GXYLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0075 (Fisher's exact test), Q value = 0.048

Table S981.  Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GXYLT1 MUTATED 2 11 1 0
GXYLT1 WILD-TYPE 202 126 46 3

Figure S518.  Get High-res Image Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GXYLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00908 (Fisher's exact test), Q value = 0.054

Table S982.  Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GXYLT1 MUTATED 1 8 3 0 1
GXYLT1 WILD-TYPE 38 88 41 88 79

Figure S519.  Get High-res Image Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GXYLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.098

Table S983.  Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GXYLT1 MUTATED 0 7 5 0 2
GXYLT1 WILD-TYPE 26 72 68 82 56

Figure S520.  Get High-res Image Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GXYLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00349 (Fisher's exact test), Q value = 0.032

Table S984.  Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GXYLT1 MUTATED 2 7 4 1
GXYLT1 WILD-TYPE 125 44 67 68

Figure S521.  Get High-res Image Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GXYLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0094 (Fisher's exact test), Q value = 0.055

Table S985.  Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GXYLT1 MUTATED 0 2 8 1 2
GXYLT1 WILD-TYPE 84 83 77 68 45

Figure S522.  Get High-res Image Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GXYLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00462 (Fisher's exact test), Q value = 0.037

Table S986.  Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GXYLT1 MUTATED 3 3 0 7
GXYLT1 WILD-TYPE 92 71 121 73

Figure S523.  Get High-res Image Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0869 (Fisher's exact test), Q value = 0.2

Table S987.  Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GXYLT1 MUTATED 2 6 3 3 0 0
GXYLT1 WILD-TYPE 50 58 69 101 40 59
'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0935 (Fisher's exact test), Q value = 0.21

Table S988.  Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GXYLT1 MUTATED 12 1 1
GXYLT1 WILD-TYPE 205 74 98
'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S989.  Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GXYLT1 MUTATED 3 3 6
GXYLT1 WILD-TYPE 118 105 66
'GXYLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.41

Table S990.  Gene #99: 'GXYLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GXYLT1 MUTATED 3 1 3 1 4
GXYLT1 WILD-TYPE 85 65 42 54 43
'ENTPD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S991.  Gene #100: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ENTPD2 MUTATED 1 5 0 0
ENTPD2 WILD-TYPE 203 132 47 3
'ENTPD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 0.19

Table S992.  Gene #100: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ENTPD2 MUTATED 0 4 1 0 0
ENTPD2 WILD-TYPE 39 92 43 88 80
'ENTPD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S993.  Gene #100: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ENTPD2 MUTATED 0 1 3 0 1
ENTPD2 WILD-TYPE 26 78 70 82 57
'ENTPD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.44

Table S994.  Gene #100: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ENTPD2 MUTATED 2 2 0 1
ENTPD2 WILD-TYPE 125 49 71 68
'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 0.65

Table S995.  Gene #100: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ENTPD2 MUTATED 0 2 2 2 0
ENTPD2 WILD-TYPE 84 83 83 67 47
'ENTPD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S996.  Gene #100: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ENTPD2 MUTATED 2 3 0 1
ENTPD2 WILD-TYPE 93 71 121 79
'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.31

Table S997.  Gene #100: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ENTPD2 MUTATED 1 2 0 1 2 0
ENTPD2 WILD-TYPE 51 62 72 103 38 59
'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S998.  Gene #100: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ENTPD2 MUTATED 4 1 1
ENTPD2 WILD-TYPE 213 74 98
'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S999.  Gene #100: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ENTPD2 MUTATED 2 1 1
ENTPD2 WILD-TYPE 119 107 71
'ENTPD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 0.91

Table S1000.  Gene #100: 'ENTPD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ENTPD2 MUTATED 1 1 1 0 1
ENTPD2 WILD-TYPE 87 65 44 55 46
'EIF4G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.0091

Table S1001.  Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EIF4G3 MUTATED 2 15 2 0
EIF4G3 WILD-TYPE 202 122 45 3

Figure S524.  Get High-res Image Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF4G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.078

Table S1002.  Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EIF4G3 MUTATED 1 11 3 2 1
EIF4G3 WILD-TYPE 38 85 41 86 79

Figure S525.  Get High-res Image Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EIF4G3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S1003.  Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EIF4G3 MUTATED 1 3 5 1 5
EIF4G3 WILD-TYPE 25 76 68 81 53
'EIF4G3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.11

Table S1004.  Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EIF4G3 MUTATED 2 6 3 4
EIF4G3 WILD-TYPE 125 45 68 65

Figure S526.  Get High-res Image Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.078

Table S1005.  Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EIF4G3 MUTATED 2 2 11 2 3
EIF4G3 WILD-TYPE 82 83 74 67 44

Figure S527.  Get High-res Image Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EIF4G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00751 (Fisher's exact test), Q value = 0.048

Table S1006.  Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EIF4G3 MUTATED 6 2 2 10
EIF4G3 WILD-TYPE 89 72 119 70

Figure S528.  Get High-res Image Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S1007.  Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EIF4G3 MUTATED 5 5 3 3 3 1
EIF4G3 WILD-TYPE 47 59 69 101 37 58
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0849 (Fisher's exact test), Q value = 0.2

Table S1008.  Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EIF4G3 MUTATED 16 1 3
EIF4G3 WILD-TYPE 201 74 96
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S1009.  Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EIF4G3 MUTATED 9 3 6
EIF4G3 WILD-TYPE 112 105 66
'EIF4G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00551 (Fisher's exact test), Q value = 0.041

Table S1010.  Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EIF4G3 MUTATED 9 0 2 1 6
EIF4G3 WILD-TYPE 79 66 43 54 41

Figure S529.  Get High-res Image Gene #101: 'EIF4G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PIGT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00672 (Fisher's exact test), Q value = 0.045

Table S1011.  Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PIGT MUTATED 1 9 1 0
PIGT WILD-TYPE 203 128 46 3

Figure S530.  Get High-res Image Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIGT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S1012.  Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PIGT MUTATED 1 7 1 1 1
PIGT WILD-TYPE 38 89 43 87 79
'PIGT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.6

Table S1013.  Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PIGT MUTATED 1 4 1 1 1
PIGT WILD-TYPE 25 75 72 81 57
'PIGT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S1014.  Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PIGT MUTATED 1 2 4 1
PIGT WILD-TYPE 126 49 67 68
'PIGT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00398 (Fisher's exact test), Q value = 0.034

Table S1015.  Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PIGT MUTATED 0 0 7 2 1
PIGT WILD-TYPE 84 85 78 67 46

Figure S531.  Get High-res Image Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIGT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.13

Table S1016.  Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PIGT MUTATED 2 1 1 6
PIGT WILD-TYPE 93 73 120 74

Figure S532.  Get High-res Image Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PIGT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.5

Table S1017.  Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PIGT MUTATED 3 3 2 3 0 0
PIGT WILD-TYPE 49 61 70 101 40 59
'PIGT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 0.95

Table S1018.  Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PIGT MUTATED 7 2 2
PIGT WILD-TYPE 210 73 97
'PIGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.12

Table S1019.  Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PIGT MUTATED 2 2 6
PIGT WILD-TYPE 119 106 66

Figure S533.  Get High-res Image Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PIGT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0483 (Fisher's exact test), Q value = 0.14

Table S1020.  Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PIGT MUTATED 1 1 2 1 5
PIGT WILD-TYPE 87 65 43 54 42

Figure S534.  Get High-res Image Gene #102: 'PIGT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.0086

Table S1021.  Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
POLM MUTATED 1 12 0 0
POLM WILD-TYPE 203 125 47 3

Figure S535.  Get High-res Image Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'POLM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.19

Table S1022.  Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
POLM MUTATED 0 7 2 1 1
POLM WILD-TYPE 39 89 42 87 79
'POLM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.18

Table S1023.  Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
POLM MUTATED 0 4 5 0 1
POLM WILD-TYPE 26 75 68 82 57
'POLM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.065

Table S1024.  Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
POLM MUTATED 1 5 3 1
POLM WILD-TYPE 126 46 68 68

Figure S536.  Get High-res Image Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'POLM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.37

Table S1025.  Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
POLM MUTATED 1 4 6 1 1
POLM WILD-TYPE 83 81 79 68 46
'POLM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S1026.  Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
POLM MUTATED 3 2 2 6
POLM WILD-TYPE 92 72 119 74
'POLM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00819 (Fisher's exact test), Q value = 0.05

Table S1027.  Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
POLM MUTATED 5 5 1 1 1 0
POLM WILD-TYPE 47 59 71 103 39 59

Figure S537.  Get High-res Image Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'POLM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S1028.  Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
POLM MUTATED 11 1 1
POLM WILD-TYPE 206 74 98
'POLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.51

Table S1029.  Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
POLM MUTATED 3 2 4
POLM WILD-TYPE 118 106 68
'POLM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0907 (Fisher's exact test), Q value = 0.2

Table S1030.  Gene #103: 'POLM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
POLM MUTATED 4 0 2 0 3
POLM WILD-TYPE 84 66 43 55 44
'CCDC108 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S1031.  Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCDC108 MUTATED 4 20 1 0
CCDC108 WILD-TYPE 200 117 46 3

Figure S538.  Get High-res Image Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC108 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00437 (Fisher's exact test), Q value = 0.036

Table S1032.  Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCDC108 MUTATED 1 14 2 2 2
CCDC108 WILD-TYPE 38 82 42 86 78

Figure S539.  Get High-res Image Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC108 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00946 (Fisher's exact test), Q value = 0.055

Table S1033.  Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCDC108 MUTATED 2 9 7 0 3
CCDC108 WILD-TYPE 24 70 66 82 55

Figure S540.  Get High-res Image Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CCDC108 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00145 (Fisher's exact test), Q value = 0.019

Table S1034.  Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCDC108 MUTATED 8 9 4 0
CCDC108 WILD-TYPE 119 42 67 69

Figure S541.  Get High-res Image Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1035.  Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCDC108 MUTATED 1 0 16 3 5
CCDC108 WILD-TYPE 83 85 69 66 42

Figure S542.  Get High-res Image Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC108 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00122 (Fisher's exact test), Q value = 0.018

Table S1036.  Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCDC108 MUTATED 7 2 3 13
CCDC108 WILD-TYPE 88 72 118 67

Figure S543.  Get High-res Image Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1037.  Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCDC108 MUTATED 11 9 3 1 0 2
CCDC108 WILD-TYPE 41 55 69 103 40 57

Figure S544.  Get High-res Image Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.011

Table S1038.  Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCDC108 MUTATED 23 0 3
CCDC108 WILD-TYPE 194 75 96

Figure S545.  Get High-res Image Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0489 (Fisher's exact test), Q value = 0.14

Table S1039.  Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCDC108 MUTATED 13 3 4
CCDC108 WILD-TYPE 108 105 68

Figure S546.  Get High-res Image Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC108 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00214 (Fisher's exact test), Q value = 0.024

Table S1040.  Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCDC108 MUTATED 5 0 3 3 9
CCDC108 WILD-TYPE 83 66 42 52 38

Figure S547.  Get High-res Image Gene #104: 'CCDC108 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1041.  Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA0195 MUTATED 1 15 3 0
KIAA0195 WILD-TYPE 203 122 44 3

Figure S548.  Get High-res Image Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1042.  Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA0195 MUTATED 1 16 1 0 0
KIAA0195 WILD-TYPE 38 80 43 88 80

Figure S549.  Get High-res Image Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00365 (Fisher's exact test), Q value = 0.033

Table S1043.  Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA0195 MUTATED 0 4 9 0 5
KIAA0195 WILD-TYPE 26 75 64 82 53

Figure S550.  Get High-res Image Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA0195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1044.  Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA0195 MUTATED 3 14 1 0
KIAA0195 WILD-TYPE 124 37 70 69

Figure S551.  Get High-res Image Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.007

Table S1045.  Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA0195 MUTATED 0 3 12 1 4
KIAA0195 WILD-TYPE 84 82 73 68 43

Figure S552.  Get High-res Image Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1046.  Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA0195 MUTATED 3 3 0 14
KIAA0195 WILD-TYPE 92 71 121 66

Figure S553.  Get High-res Image Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0067

Table S1047.  Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA0195 MUTATED 10 4 3 3 0 0
KIAA0195 WILD-TYPE 42 60 69 101 40 59

Figure S554.  Get High-res Image Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00503 (Fisher's exact test), Q value = 0.039

Table S1048.  Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA0195 MUTATED 18 1 1
KIAA0195 WILD-TYPE 199 74 98

Figure S555.  Get High-res Image Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.12

Table S1049.  Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA0195 MUTATED 9 1 4
KIAA0195 WILD-TYPE 112 107 68

Figure S556.  Get High-res Image Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA0195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1050.  Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA0195 MUTATED 1 1 2 0 10
KIAA0195 WILD-TYPE 87 65 43 55 37

Figure S557.  Get High-res Image Gene #105: 'KIAA0195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0793 (Fisher's exact test), Q value = 0.19

Table S1051.  Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDH16 MUTATED 4 10 2 0
CDH16 WILD-TYPE 200 127 45 3
'CDH16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0095 (Fisher's exact test), Q value = 0.055

Table S1052.  Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDH16 MUTATED 3 8 2 1 0
CDH16 WILD-TYPE 36 88 42 87 80

Figure S558.  Get High-res Image Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDH16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S1053.  Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDH16 MUTATED 0 6 4 1 4
CDH16 WILD-TYPE 26 73 69 81 54
'CDH16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.079

Table S1054.  Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDH16 MUTATED 5 6 4 0
CDH16 WILD-TYPE 122 45 67 69

Figure S559.  Get High-res Image Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.11

Table S1055.  Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDH16 MUTATED 1 1 8 2 3
CDH16 WILD-TYPE 83 84 77 67 44

Figure S560.  Get High-res Image Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDH16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.018

Table S1056.  Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDH16 MUTATED 2 1 2 10
CDH16 WILD-TYPE 93 73 119 70

Figure S561.  Get High-res Image Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.087

Table S1057.  Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDH16 MUTATED 7 3 2 3 1 0
CDH16 WILD-TYPE 45 61 70 101 39 59

Figure S562.  Get High-res Image Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDH16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S1058.  Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDH16 MUTATED 13 1 2
CDH16 WILD-TYPE 204 74 97
'CDH16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S1059.  Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDH16 MUTATED 6 1 3
CDH16 WILD-TYPE 115 107 69
'CDH16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.12

Table S1060.  Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDH16 MUTATED 4 0 2 0 4
CDH16 WILD-TYPE 84 66 43 55 43

Figure S563.  Get High-res Image Gene #106: 'CDH16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARHGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.034

Table S1061.  Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARHGAP5 MUTATED 4 15 3 0
ARHGAP5 WILD-TYPE 200 122 44 3

Figure S564.  Get High-res Image Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.088

Table S1062.  Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARHGAP5 MUTATED 1 10 4 1 2
ARHGAP5 WILD-TYPE 38 86 40 87 78

Figure S565.  Get High-res Image Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.71

Table S1063.  Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARHGAP5 MUTATED 0 7 5 4 3
ARHGAP5 WILD-TYPE 26 72 68 78 55
'ARHGAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S1064.  Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARHGAP5 MUTATED 6 6 4 3
ARHGAP5 WILD-TYPE 121 45 67 66
'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.12

Table S1065.  Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARHGAP5 MUTATED 1 6 10 2 3
ARHGAP5 WILD-TYPE 83 79 75 67 44

Figure S566.  Get High-res Image Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARHGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S1066.  Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARHGAP5 MUTATED 4 4 3 11
ARHGAP5 WILD-TYPE 91 70 118 69

Figure S567.  Get High-res Image Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S1067.  Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARHGAP5 MUTATED 4 4 6 7 0 1
ARHGAP5 WILD-TYPE 48 60 66 97 40 58
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.4

Table S1068.  Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARHGAP5 MUTATED 16 3 3
ARHGAP5 WILD-TYPE 201 72 96
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 0.97

Table S1069.  Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARHGAP5 MUTATED 6 6 3
ARHGAP5 WILD-TYPE 115 102 69
'ARHGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00276 (Fisher's exact test), Q value = 0.028

Table S1070.  Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARHGAP5 MUTATED 1 2 1 3 8
ARHGAP5 WILD-TYPE 87 64 44 52 39

Figure S568.  Get High-res Image Gene #107: 'ARHGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STK38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S1071.  Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
STK38 MUTATED 1 5 0 0
STK38 WILD-TYPE 203 132 47 3
'STK38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S1072.  Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
STK38 MUTATED 0 4 0 0 1
STK38 WILD-TYPE 39 92 44 88 79
'STK38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S1073.  Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
STK38 MUTATED 1 3 2 0 0
STK38 WILD-TYPE 25 76 71 82 58
'STK38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.013

Table S1074.  Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
STK38 MUTATED 1 5 0 0
STK38 WILD-TYPE 126 46 71 69

Figure S569.  Get High-res Image Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STK38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S1075.  Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
STK38 MUTATED 0 0 4 0 2
STK38 WILD-TYPE 84 85 81 69 45

Figure S570.  Get High-res Image Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STK38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0671 (Fisher's exact test), Q value = 0.17

Table S1076.  Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
STK38 MUTATED 1 0 1 4
STK38 WILD-TYPE 94 74 120 76
'STK38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0995 (Fisher's exact test), Q value = 0.22

Table S1077.  Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
STK38 MUTATED 1 3 2 0 0 0
STK38 WILD-TYPE 51 61 70 104 40 59
'STK38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.27

Table S1078.  Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
STK38 MUTATED 6 0 0
STK38 WILD-TYPE 211 75 99
'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S1079.  Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
STK38 MUTATED 3 0 2
STK38 WILD-TYPE 118 108 70
'STK38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S1080.  Gene #108: 'STK38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
STK38 MUTATED 1 0 2 0 2
STK38 WILD-TYPE 87 66 43 55 45
'CST1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S1081.  Gene #109: 'CST1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CST1 MUTATED 2 4 1 0
CST1 WILD-TYPE 202 133 46 3
'CST1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 0.94

Table S1082.  Gene #109: 'CST1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CST1 MUTATED 1 2 0 2 1
CST1 WILD-TYPE 38 94 44 86 79
'CST1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S1083.  Gene #109: 'CST1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CST1 MUTATED 2 1 1 1 1
CST1 WILD-TYPE 24 78 72 81 57
'CST1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S1084.  Gene #109: 'CST1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CST1 MUTATED 2 2 0 2
CST1 WILD-TYPE 125 49 71 67
'CST1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 0.91

Table S1085.  Gene #109: 'CST1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CST1 MUTATED 2 1 2 2 0
CST1 WILD-TYPE 82 84 83 67 47
'CST1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.6

Table S1086.  Gene #109: 'CST1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CST1 MUTATED 3 1 3 0
CST1 WILD-TYPE 92 73 118 80
'CST1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.78

Table S1087.  Gene #109: 'CST1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CST1 MUTATED 1 1 1 1 2 1
CST1 WILD-TYPE 51 63 71 103 38 58
'CST1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1088.  Gene #109: 'CST1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CST1 MUTATED 4 1 2
CST1 WILD-TYPE 213 74 97
'CST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 0.8

Table S1089.  Gene #109: 'CST1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CST1 MUTATED 2 1 2
CST1 WILD-TYPE 119 107 70
'CST1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 0.86

Table S1090.  Gene #109: 'CST1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CST1 MUTATED 2 0 1 1 1
CST1 WILD-TYPE 86 66 44 54 46
'PTCHD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S1091.  Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTCHD3 MUTATED 2 16 1 0
PTCHD3 WILD-TYPE 202 121 46 3

Figure S571.  Get High-res Image Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTCHD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00548 (Fisher's exact test), Q value = 0.041

Table S1092.  Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTCHD3 MUTATED 2 9 1 0 1
PTCHD3 WILD-TYPE 37 87 43 88 79

Figure S572.  Get High-res Image Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTCHD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 0.18

Table S1093.  Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTCHD3 MUTATED 1 6 5 0 3
PTCHD3 WILD-TYPE 25 73 68 82 55
'PTCHD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00275 (Fisher's exact test), Q value = 0.028

Table S1094.  Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTCHD3 MUTATED 3 8 3 1
PTCHD3 WILD-TYPE 124 43 68 68

Figure S573.  Get High-res Image Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTCHD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0028 (Fisher's exact test), Q value = 0.028

Table S1095.  Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTCHD3 MUTATED 0 3 9 1 4
PTCHD3 WILD-TYPE 84 82 76 68 43

Figure S574.  Get High-res Image Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTCHD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S1096.  Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTCHD3 MUTATED 4 4 2 7
PTCHD3 WILD-TYPE 91 70 119 73
'PTCHD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 0.022

Table S1097.  Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTCHD3 MUTATED 6 8 2 2 1 0
PTCHD3 WILD-TYPE 46 56 70 102 39 59

Figure S575.  Get High-res Image Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTCHD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S1098.  Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTCHD3 MUTATED 15 2 2
PTCHD3 WILD-TYPE 202 73 97
'PTCHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.44

Table S1099.  Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTCHD3 MUTATED 7 2 3
PTCHD3 WILD-TYPE 114 106 69
'PTCHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S1100.  Gene #110: 'PTCHD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTCHD3 MUTATED 3 2 2 0 5
PTCHD3 WILD-TYPE 85 64 43 55 42
'TBX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00131 (Fisher's exact test), Q value = 0.018

Table S1101.  Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TBX4 MUTATED 2 12 0 0
TBX4 WILD-TYPE 202 125 47 3

Figure S576.  Get High-res Image Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TBX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.17

Table S1102.  Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TBX4 MUTATED 1 6 2 0 1
TBX4 WILD-TYPE 38 90 42 88 79
'TBX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.53

Table S1103.  Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TBX4 MUTATED 1 5 3 1 1
TBX4 WILD-TYPE 25 74 70 81 57
'TBX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0926 (Fisher's exact test), Q value = 0.21

Table S1104.  Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TBX4 MUTATED 2 4 4 1
TBX4 WILD-TYPE 125 47 67 68
'TBX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.1

Table S1105.  Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TBX4 MUTATED 0 1 6 2 3
TBX4 WILD-TYPE 84 84 79 67 44

Figure S577.  Get High-res Image Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TBX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.091

Table S1106.  Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TBX4 MUTATED 2 2 1 7
TBX4 WILD-TYPE 93 72 120 73

Figure S578.  Get High-res Image Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.072

Table S1107.  Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TBX4 MUTATED 3 7 1 2 1 0
TBX4 WILD-TYPE 49 57 71 102 39 59

Figure S579.  Get High-res Image Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00848 (Fisher's exact test), Q value = 0.052

Table S1108.  Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TBX4 MUTATED 13 1 0
TBX4 WILD-TYPE 204 74 99

Figure S580.  Get High-res Image Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S1109.  Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TBX4 MUTATED 4 1 3
TBX4 WILD-TYPE 117 107 69
'TBX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.47

Table S1110.  Gene #111: 'TBX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TBX4 MUTATED 3 1 1 0 3
TBX4 WILD-TYPE 85 65 44 55 44
'ZMYM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.013

Table S1111.  Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZMYM4 MUTATED 2 14 3 0
ZMYM4 WILD-TYPE 202 123 44 3

Figure S581.  Get High-res Image Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZMYM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.078

Table S1112.  Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZMYM4 MUTATED 2 7 3 0 1
ZMYM4 WILD-TYPE 37 89 41 88 79

Figure S582.  Get High-res Image Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZMYM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S1113.  Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZMYM4 MUTATED 2 6 5 1 4
ZMYM4 WILD-TYPE 24 73 68 81 54
'ZMYM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00283 (Fisher's exact test), Q value = 0.028

Table S1114.  Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZMYM4 MUTATED 5 9 3 1
ZMYM4 WILD-TYPE 122 42 68 68

Figure S583.  Get High-res Image Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.21

Table S1115.  Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZMYM4 MUTATED 2 4 9 1 2
ZMYM4 WILD-TYPE 82 81 76 68 45
'ZMYM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.14

Table S1116.  Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZMYM4 MUTATED 3 3 3 9
ZMYM4 WILD-TYPE 92 71 118 71

Figure S584.  Get High-res Image Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.53

Table S1117.  Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZMYM4 MUTATED 4 6 3 3 1 2
ZMYM4 WILD-TYPE 48 58 69 101 39 57
'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.12

Table S1118.  Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZMYM4 MUTATED 16 1 2
ZMYM4 WILD-TYPE 201 74 97

Figure S585.  Get High-res Image Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1119.  Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZMYM4 MUTATED 5 4 3
ZMYM4 WILD-TYPE 116 104 69
'ZMYM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S1120.  Gene #112: 'ZMYM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZMYM4 MUTATED 6 1 2 0 3
ZMYM4 WILD-TYPE 82 65 43 55 44
'SPTY2D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0069 (Fisher's exact test), Q value = 0.046

Table S1121.  Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SPTY2D1 MUTATED 4 14 1 0
SPTY2D1 WILD-TYPE 200 123 46 3

Figure S586.  Get High-res Image Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPTY2D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.11

Table S1122.  Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SPTY2D1 MUTATED 0 10 2 3 1
SPTY2D1 WILD-TYPE 39 86 42 85 79

Figure S587.  Get High-res Image Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPTY2D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.1

Table S1123.  Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SPTY2D1 MUTATED 3 5 6 0 3
SPTY2D1 WILD-TYPE 23 74 67 82 55

Figure S588.  Get High-res Image Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SPTY2D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00139 (Fisher's exact test), Q value = 0.019

Table S1124.  Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SPTY2D1 MUTATED 5 9 2 1
SPTY2D1 WILD-TYPE 122 42 69 68

Figure S589.  Get High-res Image Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SPTY2D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S1125.  Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SPTY2D1 MUTATED 3 3 8 1 2
SPTY2D1 WILD-TYPE 81 82 77 68 45
'SPTY2D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.1

Table S1126.  Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SPTY2D1 MUTATED 3 1 4 9
SPTY2D1 WILD-TYPE 92 73 117 71

Figure S590.  Get High-res Image Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 0.81

Table S1127.  Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SPTY2D1 MUTATED 3 5 4 3 2 2
SPTY2D1 WILD-TYPE 49 59 68 101 38 57
'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.41

Table S1128.  Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SPTY2D1 MUTATED 12 1 6
SPTY2D1 WILD-TYPE 205 74 93
'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.53

Table S1129.  Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SPTY2D1 MUTATED 7 3 5
SPTY2D1 WILD-TYPE 114 105 67
'SPTY2D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0706 (Fisher's exact test), Q value = 0.18

Table S1130.  Gene #113: 'SPTY2D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SPTY2D1 MUTATED 4 1 3 1 6
SPTY2D1 WILD-TYPE 84 65 42 54 41
'SLC12A9 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S1131.  Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC12A9 MUTATED 1 16 3 0
SLC12A9 WILD-TYPE 203 121 44 3

Figure S591.  Get High-res Image Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC12A9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.12

Table S1132.  Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC12A9 MUTATED 1 9 2 1 1
SLC12A9 WILD-TYPE 38 87 42 87 79

Figure S592.  Get High-res Image Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC12A9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S1133.  Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC12A9 MUTATED 2 3 8 2 5
SLC12A9 WILD-TYPE 24 76 65 80 53
'SLC12A9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S1134.  Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC12A9 MUTATED 7 7 2 4
SLC12A9 WILD-TYPE 120 44 69 65
'SLC12A9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.8

Table S1135.  Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC12A9 MUTATED 2 5 4 4 3
SLC12A9 WILD-TYPE 82 80 81 65 44
'SLC12A9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S1136.  Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC12A9 MUTATED 6 4 2 6
SLC12A9 WILD-TYPE 89 70 119 74
'SLC12A9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.57

Table S1137.  Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC12A9 MUTATED 4 5 2 5 3 1
SLC12A9 WILD-TYPE 48 59 70 99 37 58
'SLC12A9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.58

Table S1138.  Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC12A9 MUTATED 14 3 3
SLC12A9 WILD-TYPE 203 72 96
'SLC12A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S1139.  Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC12A9 MUTATED 6 3 4
SLC12A9 WILD-TYPE 115 105 68
'SLC12A9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 0.21

Table S1140.  Gene #114: 'SLC12A9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC12A9 MUTATED 3 2 1 1 6
SLC12A9 WILD-TYPE 85 64 44 54 41
'ALPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1141.  Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ALPK2 MUTATED 0 22 2 0
ALPK2 WILD-TYPE 204 115 45 3

Figure S593.  Get High-res Image Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.011

Table S1142.  Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ALPK2 MUTATED 2 13 1 0 2
ALPK2 WILD-TYPE 37 83 43 88 78

Figure S594.  Get High-res Image Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S1143.  Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ALPK2 MUTATED 2 8 4 2 3
ALPK2 WILD-TYPE 24 71 69 80 55
'ALPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0062

Table S1144.  Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ALPK2 MUTATED 3 10 5 1
ALPK2 WILD-TYPE 124 41 66 68

Figure S595.  Get High-res Image Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00628 (Fisher's exact test), Q value = 0.044

Table S1145.  Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ALPK2 MUTATED 1 3 12 3 4
ALPK2 WILD-TYPE 83 82 73 66 43

Figure S596.  Get High-res Image Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00041 (Fisher's exact test), Q value = 0.0092

Table S1146.  Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ALPK2 MUTATED 7 3 1 12
ALPK2 WILD-TYPE 88 71 120 68

Figure S597.  Get High-res Image Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.091

Table S1147.  Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ALPK2 MUTATED 8 6 5 3 1 1
ALPK2 WILD-TYPE 44 58 67 101 39 58

Figure S598.  Get High-res Image Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00326 (Fisher's exact test), Q value = 0.031

Table S1148.  Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ALPK2 MUTATED 21 2 1
ALPK2 WILD-TYPE 196 73 98

Figure S599.  Get High-res Image Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S1149.  Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ALPK2 MUTATED 8 3 6
ALPK2 WILD-TYPE 113 105 66
'ALPK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00206 (Fisher's exact test), Q value = 0.024

Table S1150.  Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ALPK2 MUTATED 5 1 3 0 8
ALPK2 WILD-TYPE 83 65 42 55 39

Figure S600.  Get High-res Image Gene #115: 'ALPK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CABP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.32

Table S1151.  Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CABP5 MUTATED 1 4 0 0
CABP5 WILD-TYPE 203 133 47 3
'CABP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.088

Table S1152.  Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CABP5 MUTATED 0 5 0 0 0
CABP5 WILD-TYPE 39 91 44 88 80

Figure S601.  Get High-res Image Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CABP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S1153.  Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CABP5 MUTATED 0 1 3 0 0
CABP5 WILD-TYPE 26 78 70 82 58
'CABP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.0099

Table S1154.  Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CABP5 MUTATED 0 4 0 0
CABP5 WILD-TYPE 127 47 71 69

Figure S602.  Get High-res Image Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CABP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S1155.  Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CABP5 MUTATED 0 1 4 0 1
CABP5 WILD-TYPE 84 84 81 69 46
'CABP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S1156.  Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CABP5 MUTATED 2 1 0 3
CABP5 WILD-TYPE 93 73 121 77
'CABP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S1157.  Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CABP5 MUTATED 2 2 0 1 1 0
CABP5 WILD-TYPE 50 62 72 103 39 59
'CABP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S1158.  Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CABP5 MUTATED 5 1 0
CABP5 WILD-TYPE 212 74 99
'CABP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.89

Table S1159.  Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CABP5 MUTATED 3 1 1
CABP5 WILD-TYPE 118 107 71
'CABP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.66

Table S1160.  Gene #116: 'CABP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CABP5 MUTATED 1 1 1 0 2
CABP5 WILD-TYPE 87 65 44 55 45
'MED15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.0089

Table S1161.  Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MED15 MUTATED 2 15 1 0
MED15 WILD-TYPE 202 122 46 3

Figure S603.  Get High-res Image Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MED15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.15

Table S1162.  Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MED15 MUTATED 2 7 5 1 2
MED15 WILD-TYPE 37 89 39 87 78
'MED15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S1163.  Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MED15 MUTATED 2 6 4 2 1
MED15 WILD-TYPE 24 73 69 80 57
'MED15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.27

Table S1164.  Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MED15 MUTATED 3 4 6 2
MED15 WILD-TYPE 124 47 65 67
'MED15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.17

Table S1165.  Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MED15 MUTATED 1 3 9 3 1
MED15 WILD-TYPE 83 82 76 66 46
'MED15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.046 (Fisher's exact test), Q value = 0.14

Table S1166.  Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MED15 MUTATED 5 5 1 6
MED15 WILD-TYPE 90 69 120 74

Figure S604.  Get High-res Image Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MED15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S1167.  Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MED15 MUTATED 3 4 4 4 3 0
MED15 WILD-TYPE 49 60 68 100 37 59
'MED15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0999 (Fisher's exact test), Q value = 0.22

Table S1168.  Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MED15 MUTATED 12 5 1
MED15 WILD-TYPE 205 70 98
'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.21

Table S1169.  Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MED15 MUTATED 4 3 7
MED15 WILD-TYPE 117 105 65
'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.5

Table S1170.  Gene #117: 'MED15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MED15 MUTATED 5 4 2 0 3
MED15 WILD-TYPE 83 62 43 55 44
'GYLTL1B MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1171.  Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GYLTL1B MUTATED 0 15 1 0
GYLTL1B WILD-TYPE 204 122 46 3

Figure S605.  Get High-res Image Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GYLTL1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0042 (Fisher's exact test), Q value = 0.035

Table S1172.  Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GYLTL1B MUTATED 0 10 2 0 3
GYLTL1B WILD-TYPE 39 86 42 88 77

Figure S606.  Get High-res Image Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GYLTL1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S1173.  Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GYLTL1B MUTATED 1 3 4 1 2
GYLTL1B WILD-TYPE 25 76 69 81 56
'GYLTL1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00845 (Fisher's exact test), Q value = 0.051

Table S1174.  Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GYLTL1B MUTATED 3 6 2 0
GYLTL1B WILD-TYPE 124 45 69 69

Figure S607.  Get High-res Image Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GYLTL1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S1175.  Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GYLTL1B MUTATED 0 3 9 3 1
GYLTL1B WILD-TYPE 84 82 76 66 46

Figure S608.  Get High-res Image Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GYLTL1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S1176.  Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GYLTL1B MUTATED 5 1 2 8
GYLTL1B WILD-TYPE 90 73 119 72

Figure S609.  Get High-res Image Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.022

Table S1177.  Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GYLTL1B MUTATED 6 7 1 2 1 0
GYLTL1B WILD-TYPE 46 57 71 102 39 59

Figure S610.  Get High-res Image Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.66

Table S1178.  Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GYLTL1B MUTATED 12 2 3
GYLTL1B WILD-TYPE 205 73 96
'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.73

Table S1179.  Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GYLTL1B MUTATED 5 3 4
GYLTL1B WILD-TYPE 116 105 68
'GYLTL1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.14

Table S1180.  Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GYLTL1B MUTATED 3 1 4 0 4
GYLTL1B WILD-TYPE 85 65 41 55 43

Figure S611.  Get High-res Image Gene #118: 'GYLTL1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IL2RG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S1181.  Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IL2RG MUTATED 1 8 1 0
IL2RG WILD-TYPE 203 129 46 3

Figure S612.  Get High-res Image Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IL2RG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.31

Table S1182.  Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IL2RG MUTATED 2 4 1 1 0
IL2RG WILD-TYPE 37 92 43 87 80
'IL2RG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.43

Table S1183.  Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IL2RG MUTATED 0 3 1 1 4
IL2RG WILD-TYPE 26 76 72 81 54
'IL2RG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S1184.  Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IL2RG MUTATED 3 4 1 1
IL2RG WILD-TYPE 124 47 70 68
'IL2RG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.58

Table S1185.  Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IL2RG MUTATED 1 1 4 2 0
IL2RG WILD-TYPE 83 84 81 67 47
'IL2RG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S1186.  Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IL2RG MUTATED 3 1 1 3
IL2RG WILD-TYPE 92 73 120 77
'IL2RG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.58

Table S1187.  Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IL2RG MUTATED 3 3 1 2 0 1
IL2RG WILD-TYPE 49 61 71 102 40 58
'IL2RG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.5

Table S1188.  Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IL2RG MUTATED 8 1 1
IL2RG WILD-TYPE 209 74 98
'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.18

Table S1189.  Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IL2RG MUTATED 4 0 3
IL2RG WILD-TYPE 117 108 69
'IL2RG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.937 (Fisher's exact test), Q value = 0.97

Table S1190.  Gene #119: 'IL2RG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IL2RG MUTATED 2 1 1 1 2
IL2RG WILD-TYPE 86 65 44 54 45
'CCDC88A MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S1191.  Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCDC88A MUTATED 2 18 1 0
CCDC88A WILD-TYPE 202 119 46 3

Figure S613.  Get High-res Image Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC88A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00277 (Fisher's exact test), Q value = 0.028

Table S1192.  Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCDC88A MUTATED 2 9 4 0 1
CCDC88A WILD-TYPE 37 87 40 88 79

Figure S614.  Get High-res Image Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC88A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 0.16

Table S1193.  Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCDC88A MUTATED 1 8 3 1 6
CCDC88A WILD-TYPE 25 71 70 81 52
'CCDC88A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00448 (Fisher's exact test), Q value = 0.036

Table S1194.  Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCDC88A MUTATED 3 8 6 2
CCDC88A WILD-TYPE 124 43 65 67

Figure S615.  Get High-res Image Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00558 (Fisher's exact test), Q value = 0.041

Table S1195.  Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCDC88A MUTATED 0 5 11 4 2
CCDC88A WILD-TYPE 84 80 74 65 45

Figure S616.  Get High-res Image Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC88A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00944 (Fisher's exact test), Q value = 0.055

Table S1196.  Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCDC88A MUTATED 4 6 2 10
CCDC88A WILD-TYPE 91 68 119 70

Figure S617.  Get High-res Image Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1197.  Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCDC88A MUTATED 6 14 1 1 0 0
CCDC88A WILD-TYPE 46 50 71 103 40 59

Figure S618.  Get High-res Image Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00194 (Fisher's exact test), Q value = 0.023

Table S1198.  Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCDC88A MUTATED 20 1 1
CCDC88A WILD-TYPE 197 74 98

Figure S619.  Get High-res Image Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.08

Table S1199.  Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCDC88A MUTATED 5 2 8
CCDC88A WILD-TYPE 116 106 64

Figure S620.  Get High-res Image Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC88A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00431 (Fisher's exact test), Q value = 0.035

Table S1200.  Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCDC88A MUTATED 3 1 5 0 6
CCDC88A WILD-TYPE 85 65 40 55 41

Figure S621.  Get High-res Image Gene #120: 'CCDC88A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PIGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0068

Table S1201.  Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PIGB MUTATED 0 10 0 0
PIGB WILD-TYPE 204 127 47 3

Figure S622.  Get High-res Image Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S1202.  Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PIGB MUTATED 0 4 2 0 1
PIGB WILD-TYPE 39 92 42 88 79
'PIGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S1203.  Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PIGB MUTATED 1 4 2 0 1
PIGB WILD-TYPE 25 75 71 82 57
'PIGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0096 (Fisher's exact test), Q value = 0.056

Table S1204.  Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PIGB MUTATED 2 5 1 0
PIGB WILD-TYPE 125 46 70 69

Figure S623.  Get High-res Image Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.17

Table S1205.  Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PIGB MUTATED 0 2 6 1 1
PIGB WILD-TYPE 84 83 79 68 46
'PIGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.72

Table S1206.  Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PIGB MUTATED 2 3 2 3
PIGB WILD-TYPE 93 71 119 77
'PIGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.15

Table S1207.  Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PIGB MUTATED 2 5 2 1 0 0
PIGB WILD-TYPE 50 59 70 103 40 59
'PIGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0764 (Fisher's exact test), Q value = 0.18

Table S1208.  Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PIGB MUTATED 9 1 0
PIGB WILD-TYPE 208 74 99
'PIGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S1209.  Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PIGB MUTATED 3 1 2
PIGB WILD-TYPE 118 107 70
'PIGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S1210.  Gene #121: 'PIGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PIGB MUTATED 2 1 2 0 1
PIGB WILD-TYPE 86 65 43 55 46
'PIK3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1211.  Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PIK3CA MUTATED 14 42 9 0
PIK3CA WILD-TYPE 190 95 38 3

Figure S624.  Get High-res Image Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIK3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1212.  Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PIK3CA MUTATED 5 20 28 3 3
PIK3CA WILD-TYPE 34 76 16 85 77

Figure S625.  Get High-res Image Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0054

Table S1213.  Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PIK3CA MUTATED 3 20 18 3 14
PIK3CA WILD-TYPE 23 59 55 79 44

Figure S626.  Get High-res Image Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PIK3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S1214.  Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PIK3CA MUTATED 20 19 16 3
PIK3CA WILD-TYPE 107 32 55 66

Figure S627.  Get High-res Image Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S1215.  Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PIK3CA MUTATED 4 15 28 7 8
PIK3CA WILD-TYPE 80 70 57 62 39

Figure S628.  Get High-res Image Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S1216.  Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PIK3CA MUTATED 12 9 22 19
PIK3CA WILD-TYPE 83 65 99 61
'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.0076

Table S1217.  Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PIK3CA MUTATED 9 18 17 17 3 1
PIK3CA WILD-TYPE 43 46 55 87 37 58

Figure S629.  Get High-res Image Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.0081

Table S1218.  Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PIK3CA MUTATED 48 12 5
PIK3CA WILD-TYPE 169 63 94

Figure S630.  Get High-res Image Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00098 (Fisher's exact test), Q value = 0.015

Table S1219.  Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PIK3CA MUTATED 13 12 22
PIK3CA WILD-TYPE 108 96 50

Figure S631.  Get High-res Image Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PIK3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1220.  Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PIK3CA MUTATED 12 7 16 0 12
PIK3CA WILD-TYPE 76 59 29 55 35

Figure S632.  Get High-res Image Gene #122: 'PIK3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPIG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.017

Table S1221.  Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PPIG MUTATED 2 13 3 0
PPIG WILD-TYPE 202 124 44 3

Figure S633.  Get High-res Image Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPIG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.12

Table S1222.  Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PPIG MUTATED 1 10 1 2 1
PPIG WILD-TYPE 38 86 43 86 79

Figure S634.  Get High-res Image Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PPIG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 0.21

Table S1223.  Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PPIG MUTATED 0 6 6 3 0
PPIG WILD-TYPE 26 73 67 79 58
'PPIG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.089

Table S1224.  Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PPIG MUTATED 3 7 3 2
PPIG WILD-TYPE 124 44 68 67

Figure S635.  Get High-res Image Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPIG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00821 (Fisher's exact test), Q value = 0.05

Table S1225.  Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PPIG MUTATED 1 4 7 0 5
PPIG WILD-TYPE 83 81 78 69 42

Figure S636.  Get High-res Image Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PPIG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00328 (Fisher's exact test), Q value = 0.031

Table S1226.  Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PPIG MUTATED 1 3 3 10
PPIG WILD-TYPE 94 71 118 70

Figure S637.  Get High-res Image Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPIG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S1227.  Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PPIG MUTATED 6 5 2 3 1 1
PPIG WILD-TYPE 46 59 70 101 39 58
'PPIG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.47

Table S1228.  Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PPIG MUTATED 13 3 2
PPIG WILD-TYPE 204 72 97
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S1229.  Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PPIG MUTATED 8 2 4
PPIG WILD-TYPE 113 106 68
'PPIG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0537 (Fisher's exact test), Q value = 0.15

Table S1230.  Gene #123: 'PPIG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PPIG MUTATED 3 1 3 1 6
PPIG WILD-TYPE 85 65 42 54 41
'ATP6V1B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S1231.  Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ATP6V1B1 MUTATED 2 18 1 0
ATP6V1B1 WILD-TYPE 202 119 46 3

Figure S638.  Get High-res Image Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.013

Table S1232.  Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ATP6V1B1 MUTATED 1 11 3 0 1
ATP6V1B1 WILD-TYPE 38 85 41 88 79

Figure S639.  Get High-res Image Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.063 (Fisher's exact test), Q value = 0.16

Table S1233.  Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ATP6V1B1 MUTATED 3 6 2 1 5
ATP6V1B1 WILD-TYPE 23 73 71 81 53
'ATP6V1B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.14

Table S1234.  Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ATP6V1B1 MUTATED 4 7 4 2
ATP6V1B1 WILD-TYPE 123 44 67 67
'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00676 (Fisher's exact test), Q value = 0.045

Table S1235.  Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ATP6V1B1 MUTATED 0 4 10 4 1
ATP6V1B1 WILD-TYPE 84 81 75 65 46

Figure S640.  Get High-res Image Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S1236.  Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ATP6V1B1 MUTATED 5 5 1 8
ATP6V1B1 WILD-TYPE 90 69 120 72

Figure S641.  Get High-res Image Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.012

Table S1237.  Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ATP6V1B1 MUTATED 3 10 5 1 2 0
ATP6V1B1 WILD-TYPE 49 54 67 103 38 59

Figure S642.  Get High-res Image Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0625 (Fisher's exact test), Q value = 0.16

Table S1238.  Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ATP6V1B1 MUTATED 17 2 2
ATP6V1B1 WILD-TYPE 200 73 97
'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0069 (Fisher's exact test), Q value = 0.046

Table S1239.  Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ATP6V1B1 MUTATED 6 1 8
ATP6V1B1 WILD-TYPE 115 107 64

Figure S643.  Get High-res Image Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ATP6V1B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0329 (Fisher's exact test), Q value = 0.11

Table S1240.  Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ATP6V1B1 MUTATED 5 1 4 0 5
ATP6V1B1 WILD-TYPE 83 65 41 55 42

Figure S644.  Get High-res Image Gene #124: 'ATP6V1B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.013

Table S1241.  Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLEKHA6 MUTATED 4 17 1 0
PLEKHA6 WILD-TYPE 200 120 46 3

Figure S645.  Get High-res Image Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00349 (Fisher's exact test), Q value = 0.032

Table S1242.  Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLEKHA6 MUTATED 0 13 2 2 2
PLEKHA6 WILD-TYPE 39 83 42 86 78

Figure S646.  Get High-res Image Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.653 (Fisher's exact test), Q value = 0.73

Table S1243.  Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLEKHA6 MUTATED 1 7 5 3 5
PLEKHA6 WILD-TYPE 25 72 68 79 53
'PLEKHA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0714 (Fisher's exact test), Q value = 0.18

Table S1244.  Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLEKHA6 MUTATED 6 8 3 4
PLEKHA6 WILD-TYPE 121 43 68 65
'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S1245.  Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLEKHA6 MUTATED 1 6 7 3 4
PLEKHA6 WILD-TYPE 83 79 78 66 43
'PLEKHA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.061

Table S1246.  Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLEKHA6 MUTATED 4 5 2 10
PLEKHA6 WILD-TYPE 91 69 119 70

Figure S647.  Get High-res Image Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00487 (Fisher's exact test), Q value = 0.038

Table S1247.  Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLEKHA6 MUTATED 6 9 2 4 2 0
PLEKHA6 WILD-TYPE 46 55 70 100 38 59

Figure S648.  Get High-res Image Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.11

Table S1248.  Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLEKHA6 MUTATED 19 1 3
PLEKHA6 WILD-TYPE 198 74 96

Figure S649.  Get High-res Image Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.84

Table S1249.  Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLEKHA6 MUTATED 8 5 5
PLEKHA6 WILD-TYPE 113 103 67
'PLEKHA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 0.14

Table S1250.  Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLEKHA6 MUTATED 4 2 4 1 7
PLEKHA6 WILD-TYPE 84 64 41 54 40

Figure S650.  Get High-res Image Gene #125: 'PLEKHA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLA2G1B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1251.  Gene #126: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLA2G1B MUTATED 4 2 0 0
PLA2G1B WILD-TYPE 200 135 47 3
'PLA2G1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.64

Table S1252.  Gene #126: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLA2G1B MUTATED 1 1 2 1 1
PLA2G1B WILD-TYPE 38 95 42 87 79
'PLA2G1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.69

Table S1253.  Gene #126: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLA2G1B MUTATED 0 1 0 2 2
PLA2G1B WILD-TYPE 26 78 73 80 56
'PLA2G1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.924 (Fisher's exact test), Q value = 0.96

Table S1254.  Gene #126: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLA2G1B MUTATED 3 0 1 1
PLA2G1B WILD-TYPE 124 51 70 68
'PLA2G1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 0.94

Table S1255.  Gene #126: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLA2G1B MUTATED 2 2 1 1 0
PLA2G1B WILD-TYPE 82 83 84 68 47
'PLA2G1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 0.5

Table S1256.  Gene #126: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLA2G1B MUTATED 1 1 4 0
PLA2G1B WILD-TYPE 94 73 117 80
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S1257.  Gene #126: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLA2G1B MUTATED 0 0 3 2 0 1
PLA2G1B WILD-TYPE 52 64 69 102 40 58
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 0.9

Table S1258.  Gene #126: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLA2G1B MUTATED 3 1 2
PLA2G1B WILD-TYPE 214 74 97
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.5

Table S1259.  Gene #126: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLA2G1B MUTATED 2 3 0
PLA2G1B WILD-TYPE 119 105 72
'PLA2G1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 0.76

Table S1260.  Gene #126: 'PLA2G1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLA2G1B MUTATED 2 1 0 2 0
PLA2G1B WILD-TYPE 86 65 45 53 47
'RTKN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.005

Table S1261.  Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RTKN2 MUTATED 0 11 0 0
RTKN2 WILD-TYPE 204 126 47 3

Figure S651.  Get High-res Image Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RTKN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S1262.  Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RTKN2 MUTATED 0 5 1 0 3
RTKN2 WILD-TYPE 39 91 43 88 77
'RTKN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S1263.  Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RTKN2 MUTATED 1 1 5 1 1
RTKN2 WILD-TYPE 25 78 68 81 57
'RTKN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.26

Table S1264.  Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RTKN2 MUTATED 2 4 1 2
RTKN2 WILD-TYPE 125 47 70 67
'RTKN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.066

Table S1265.  Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RTKN2 MUTATED 0 3 7 1 0
RTKN2 WILD-TYPE 84 82 78 68 47

Figure S652.  Get High-res Image Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RTKN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.41

Table S1266.  Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RTKN2 MUTATED 3 3 1 4
RTKN2 WILD-TYPE 92 71 120 76
'RTKN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.34

Table S1267.  Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RTKN2 MUTATED 1 5 2 2 1 0
RTKN2 WILD-TYPE 51 59 70 102 39 59
'RTKN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S1268.  Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RTKN2 MUTATED 8 0 3
RTKN2 WILD-TYPE 209 75 96
'RTKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S1269.  Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RTKN2 MUTATED 5 1 2
RTKN2 WILD-TYPE 116 107 70
'RTKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S1270.  Gene #127: 'RTKN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RTKN2 MUTATED 3 1 2 0 2
RTKN2 WILD-TYPE 85 65 43 55 45
'PAX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00488 (Fisher's exact test), Q value = 0.038

Table S1271.  Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PAX2 MUTATED 1 10 1 0
PAX2 WILD-TYPE 203 127 46 3

Figure S653.  Get High-res Image Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.12

Table S1272.  Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PAX2 MUTATED 1 6 3 0 1
PAX2 WILD-TYPE 38 90 41 88 79

Figure S654.  Get High-res Image Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.075

Table S1273.  Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PAX2 MUTATED 0 4 7 0 1
PAX2 WILD-TYPE 26 75 66 82 57

Figure S655.  Get High-res Image Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PAX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.013

Table S1274.  Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PAX2 MUTATED 2 7 3 0
PAX2 WILD-TYPE 125 44 68 69

Figure S656.  Get High-res Image Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S1275.  Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PAX2 MUTATED 0 3 7 1 0
PAX2 WILD-TYPE 84 82 78 68 47

Figure S657.  Get High-res Image Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PAX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S1276.  Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PAX2 MUTATED 2 3 1 5
PAX2 WILD-TYPE 93 71 120 75
'PAX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S1277.  Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PAX2 MUTATED 1 5 3 3 0 0
PAX2 WILD-TYPE 51 59 69 101 40 59
'PAX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0854 (Fisher's exact test), Q value = 0.2

Table S1278.  Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PAX2 MUTATED 9 3 0
PAX2 WILD-TYPE 208 72 99
'PAX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S1279.  Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PAX2 MUTATED 2 2 4
PAX2 WILD-TYPE 119 106 68
'PAX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0622 (Fisher's exact test), Q value = 0.16

Table S1280.  Gene #128: 'PAX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PAX2 MUTATED 2 2 4 0 0
PAX2 WILD-TYPE 86 64 41 55 47
'SERPINI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.062

Table S1281.  Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SERPINI1 MUTATED 1 8 0 0
SERPINI1 WILD-TYPE 203 129 47 3

Figure S658.  Get High-res Image Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SERPINI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.13

Table S1282.  Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SERPINI1 MUTATED 0 4 2 0 0
SERPINI1 WILD-TYPE 39 92 42 88 80

Figure S659.  Get High-res Image Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SERPINI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S1283.  Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SERPINI1 MUTATED 1 4 2 0 2
SERPINI1 WILD-TYPE 25 75 71 82 56
'SERPINI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00165 (Fisher's exact test), Q value = 0.021

Table S1284.  Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SERPINI1 MUTATED 2 6 1 0
SERPINI1 WILD-TYPE 125 45 70 69

Figure S660.  Get High-res Image Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SERPINI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0937 (Fisher's exact test), Q value = 0.21

Table S1285.  Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SERPINI1 MUTATED 1 0 5 1 1
SERPINI1 WILD-TYPE 83 85 80 68 46
'SERPINI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S1286.  Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SERPINI1 MUTATED 4 1 1 2
SERPINI1 WILD-TYPE 91 73 120 78
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S1287.  Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SERPINI1 MUTATED 0 3 4 1 0 1
SERPINI1 WILD-TYPE 52 61 68 103 40 58
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.47

Table S1288.  Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SERPINI1 MUTATED 7 0 2
SERPINI1 WILD-TYPE 210 75 97
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0867 (Fisher's exact test), Q value = 0.2

Table S1289.  Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SERPINI1 MUTATED 2 0 3
SERPINI1 WILD-TYPE 119 108 69
'SERPINI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0687 (Fisher's exact test), Q value = 0.17

Table S1290.  Gene #129: 'SERPINI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SERPINI1 MUTATED 1 0 1 0 3
SERPINI1 WILD-TYPE 87 66 44 55 44
'TMEM41A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00331 (Fisher's exact test), Q value = 0.031

Table S1291.  Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMEM41A MUTATED 0 8 1 0
TMEM41A WILD-TYPE 204 129 46 3

Figure S661.  Get High-res Image Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM41A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00435 (Fisher's exact test), Q value = 0.035

Table S1292.  Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TMEM41A MUTATED 0 7 1 0 0
TMEM41A WILD-TYPE 39 89 43 88 80

Figure S662.  Get High-res Image Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMEM41A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.12

Table S1293.  Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMEM41A MUTATED 1 0 4 0 2
TMEM41A WILD-TYPE 25 79 69 82 56

Figure S663.  Get High-res Image Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TMEM41A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00299 (Fisher's exact test), Q value = 0.029

Table S1294.  Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMEM41A MUTATED 2 5 0 0
TMEM41A WILD-TYPE 125 46 71 69

Figure S664.  Get High-res Image Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.11

Table S1295.  Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMEM41A MUTATED 0 2 6 1 0
TMEM41A WILD-TYPE 84 83 79 68 47

Figure S665.  Get High-res Image Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMEM41A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00565 (Fisher's exact test), Q value = 0.041

Table S1296.  Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMEM41A MUTATED 2 1 0 6
TMEM41A WILD-TYPE 93 73 121 74

Figure S666.  Get High-res Image Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.16

Table S1297.  Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMEM41A MUTATED 3 4 1 1 0 0
TMEM41A WILD-TYPE 49 60 71 103 40 59
'TMEM41A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S1298.  Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMEM41A MUTATED 7 1 1
TMEM41A WILD-TYPE 210 74 98
'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.55

Table S1299.  Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TMEM41A MUTATED 3 1 3
TMEM41A WILD-TYPE 118 107 69
'TMEM41A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S1300.  Gene #130: 'TMEM41A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TMEM41A MUTATED 1 1 2 0 3
TMEM41A WILD-TYPE 87 65 43 55 44
'ADAM30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.063

Table S1301.  Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ADAM30 MUTATED 3 12 1 0
ADAM30 WILD-TYPE 201 125 46 3

Figure S667.  Get High-res Image Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADAM30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 0.19

Table S1302.  Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ADAM30 MUTATED 1 7 1 2 0
ADAM30 WILD-TYPE 38 89 43 86 80
'ADAM30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.42

Table S1303.  Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ADAM30 MUTATED 0 6 6 2 2
ADAM30 WILD-TYPE 26 73 67 80 56
'ADAM30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00633 (Fisher's exact test), Q value = 0.044

Table S1304.  Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ADAM30 MUTATED 3 8 3 2
ADAM30 WILD-TYPE 124 43 68 67

Figure S668.  Get High-res Image Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S1305.  Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ADAM30 MUTATED 1 2 7 2 3
ADAM30 WILD-TYPE 83 83 78 67 44
'ADAM30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0302 (Fisher's exact test), Q value = 0.11

Table S1306.  Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ADAM30 MUTATED 3 4 1 7
ADAM30 WILD-TYPE 92 70 120 73

Figure S669.  Get High-res Image Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.038 (Fisher's exact test), Q value = 0.12

Table S1307.  Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ADAM30 MUTATED 5 6 1 2 1 1
ADAM30 WILD-TYPE 47 58 71 102 39 58

Figure S670.  Get High-res Image Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADAM30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 0.2

Table S1308.  Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ADAM30 MUTATED 12 0 4
ADAM30 WILD-TYPE 205 75 95
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.64

Table S1309.  Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ADAM30 MUTATED 2 3 3
ADAM30 WILD-TYPE 119 105 69
'ADAM30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.273 (Fisher's exact test), Q value = 0.4

Table S1310.  Gene #131: 'ADAM30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ADAM30 MUTATED 2 0 1 2 3
ADAM30 WILD-TYPE 86 66 44 53 44
'B3GNT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0532 (Fisher's exact test), Q value = 0.15

Table S1311.  Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
B3GNT5 MUTATED 2 8 1 0
B3GNT5 WILD-TYPE 202 129 46 3
'B3GNT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S1312.  Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
B3GNT5 MUTATED 2 4 1 0 2
B3GNT5 WILD-TYPE 37 92 43 88 78
'B3GNT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.64

Table S1313.  Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
B3GNT5 MUTATED 1 3 4 1 1
B3GNT5 WILD-TYPE 25 76 69 81 57
'B3GNT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S1314.  Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
B3GNT5 MUTATED 3 4 2 1
B3GNT5 WILD-TYPE 124 47 69 68
'B3GNT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.1

Table S1315.  Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
B3GNT5 MUTATED 0 2 7 1 1
B3GNT5 WILD-TYPE 84 83 78 68 46

Figure S671.  Get High-res Image Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'B3GNT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S1316.  Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
B3GNT5 MUTATED 2 1 2 6
B3GNT5 WILD-TYPE 93 73 119 74
'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00357 (Fisher's exact test), Q value = 0.032

Table S1317.  Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
B3GNT5 MUTATED 5 4 0 1 1 0
B3GNT5 WILD-TYPE 47 60 72 103 39 59

Figure S672.  Get High-res Image Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0343 (Fisher's exact test), Q value = 0.11

Table S1318.  Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
B3GNT5 MUTATED 10 1 0
B3GNT5 WILD-TYPE 207 74 99

Figure S673.  Get High-res Image Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.51

Table S1319.  Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
B3GNT5 MUTATED 5 1 2
B3GNT5 WILD-TYPE 116 107 70
'B3GNT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.1

Table S1320.  Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
B3GNT5 MUTATED 2 0 2 0 4
B3GNT5 WILD-TYPE 86 66 43 55 43

Figure S674.  Get High-res Image Gene #132: 'B3GNT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PAPD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0581 (Fisher's exact test), Q value = 0.16

Table S1321.  Gene #133: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PAPD4 MUTATED 2 6 3 0
PAPD4 WILD-TYPE 202 131 44 3
'PAPD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.16

Table S1322.  Gene #133: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PAPD4 MUTATED 2 6 1 1 0
PAPD4 WILD-TYPE 37 90 43 87 80
'PAPD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.37

Table S1323.  Gene #133: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PAPD4 MUTATED 1 3 4 0 2
PAPD4 WILD-TYPE 25 76 69 82 56
'PAPD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.18

Table S1324.  Gene #133: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PAPD4 MUTATED 3 4 3 0
PAPD4 WILD-TYPE 124 47 68 69
'PAPD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.67

Table S1325.  Gene #133: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PAPD4 MUTATED 1 2 3 4 1
PAPD4 WILD-TYPE 83 83 82 65 46
'PAPD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S1326.  Gene #133: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PAPD4 MUTATED 5 1 1 4
PAPD4 WILD-TYPE 90 73 120 76
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 0.86

Table S1327.  Gene #133: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PAPD4 MUTATED 3 2 1 3 1 1
PAPD4 WILD-TYPE 49 62 71 101 39 58
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S1328.  Gene #133: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PAPD4 MUTATED 9 1 1
PAPD4 WILD-TYPE 208 74 98
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.77

Table S1329.  Gene #133: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PAPD4 MUTATED 5 2 2
PAPD4 WILD-TYPE 116 106 70
'PAPD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S1330.  Gene #133: 'PAPD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PAPD4 MUTATED 3 1 1 1 3
PAPD4 WILD-TYPE 85 65 44 54 44
'DTX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.48

Table S1331.  Gene #134: 'DTX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DTX3 MUTATED 2 4 0 0
DTX3 WILD-TYPE 202 133 47 3
'DTX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S1332.  Gene #134: 'DTX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DTX3 MUTATED 0 3 2 1 0
DTX3 WILD-TYPE 39 93 42 87 80
'DTX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 0.21

Table S1333.  Gene #134: 'DTX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DTX3 MUTATED 0 4 1 0 0
DTX3 WILD-TYPE 26 75 72 82 58
'DTX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S1334.  Gene #134: 'DTX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DTX3 MUTATED 1 1 3 0
DTX3 WILD-TYPE 126 50 68 69
'DTX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.38

Table S1335.  Gene #134: 'DTX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DTX3 MUTATED 2 0 3 0 1
DTX3 WILD-TYPE 82 85 82 69 46
'DTX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S1336.  Gene #134: 'DTX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DTX3 MUTATED 0 1 2 3
DTX3 WILD-TYPE 95 73 119 77
'DTX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.79

Table S1337.  Gene #134: 'DTX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DTX3 MUTATED 2 2 1 1 0 1
DTX3 WILD-TYPE 50 62 71 103 40 58
'DTX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1338.  Gene #134: 'DTX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DTX3 MUTATED 4 1 2
DTX3 WILD-TYPE 213 74 97
'DTX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.22

Table S1339.  Gene #134: 'DTX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DTX3 MUTATED 5 0 1
DTX3 WILD-TYPE 116 108 71
'DTX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S1340.  Gene #134: 'DTX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DTX3 MUTATED 1 1 0 1 3
DTX3 WILD-TYPE 87 65 45 54 44
'BTBD11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.013

Table S1341.  Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BTBD11 MUTATED 4 17 5 0
BTBD11 WILD-TYPE 200 120 42 3

Figure S675.  Get High-res Image Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTBD11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S1342.  Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BTBD11 MUTATED 2 13 4 0 1
BTBD11 WILD-TYPE 37 83 40 88 79

Figure S676.  Get High-res Image Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S1343.  Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BTBD11 MUTATED 2 8 7 2 2
BTBD11 WILD-TYPE 24 71 66 80 56
'BTBD11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.3

Table S1344.  Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BTBD11 MUTATED 6 7 5 3
BTBD11 WILD-TYPE 121 44 66 66
'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.06

Table S1345.  Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BTBD11 MUTATED 2 2 11 5 6
BTBD11 WILD-TYPE 82 83 74 64 41

Figure S677.  Get High-res Image Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BTBD11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.082

Table S1346.  Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BTBD11 MUTATED 11 2 4 9
BTBD11 WILD-TYPE 84 72 117 71

Figure S678.  Get High-res Image Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.012

Table S1347.  Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BTBD11 MUTATED 6 7 7 1 5 0
BTBD11 WILD-TYPE 46 57 65 103 35 59

Figure S679.  Get High-res Image Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0058

Table S1348.  Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BTBD11 MUTATED 24 0 2
BTBD11 WILD-TYPE 193 75 97

Figure S680.  Get High-res Image Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S1349.  Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BTBD11 MUTATED 10 3 7
BTBD11 WILD-TYPE 111 105 65
'BTBD11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.013

Table S1350.  Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BTBD11 MUTATED 10 0 5 0 5
BTBD11 WILD-TYPE 78 66 40 55 42

Figure S681.  Get High-res Image Gene #135: 'BTBD11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ART1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.089

Table S1351.  Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ART1 MUTATED 1 7 0 0
ART1 WILD-TYPE 203 130 47 3

Figure S682.  Get High-res Image Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ART1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S1352.  Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ART1 MUTATED 1 2 2 1 0
ART1 WILD-TYPE 38 94 42 87 80
'ART1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.19

Table S1353.  Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ART1 MUTATED 1 4 1 0 0
ART1 WILD-TYPE 25 75 72 82 58
'ART1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0596 (Fisher's exact test), Q value = 0.16

Table S1354.  Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ART1 MUTATED 1 3 2 0
ART1 WILD-TYPE 126 48 69 69
'ART1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.29

Table S1355.  Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ART1 MUTATED 1 0 4 1 2
ART1 WILD-TYPE 83 85 81 68 45
'ART1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0886 (Fisher's exact test), Q value = 0.2

Table S1356.  Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ART1 MUTATED 3 0 1 4
ART1 WILD-TYPE 92 74 120 76
'ART1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00488 (Fisher's exact test), Q value = 0.038

Table S1357.  Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ART1 MUTATED 2 5 0 0 0 1
ART1 WILD-TYPE 50 59 72 104 40 58

Figure S683.  Get High-res Image Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ART1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S1358.  Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ART1 MUTATED 7 0 1
ART1 WILD-TYPE 210 75 98
'ART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.091

Table S1359.  Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ART1 MUTATED 2 0 4
ART1 WILD-TYPE 119 108 68

Figure S684.  Get High-res Image Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ART1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0377 (Fisher's exact test), Q value = 0.12

Table S1360.  Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ART1 MUTATED 1 0 3 0 2
ART1 WILD-TYPE 87 66 42 55 45

Figure S685.  Get High-res Image Gene #136: 'ART1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BRD8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S1361.  Gene #137: 'BRD8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BRD8 MUTATED 13 17 2 0
BRD8 WILD-TYPE 191 120 45 3
'BRD8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 0.91

Table S1362.  Gene #137: 'BRD8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BRD8 MUTATED 4 10 4 7 5
BRD8 WILD-TYPE 35 86 40 81 75
'BRD8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.54

Table S1363.  Gene #137: 'BRD8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BRD8 MUTATED 1 6 5 3 7
BRD8 WILD-TYPE 25 73 68 79 51
'BRD8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.87

Table S1364.  Gene #137: 'BRD8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BRD8 MUTATED 9 5 4 4
BRD8 WILD-TYPE 118 46 67 65
'BRD8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S1365.  Gene #137: 'BRD8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BRD8 MUTATED 8 9 6 6 1
BRD8 WILD-TYPE 76 76 79 63 46
'BRD8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 0.84

Table S1366.  Gene #137: 'BRD8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BRD8 MUTATED 8 4 10 8
BRD8 WILD-TYPE 87 70 111 72
'BRD8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S1367.  Gene #137: 'BRD8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BRD8 MUTATED 3 5 8 8 1 7
BRD8 WILD-TYPE 49 59 64 96 39 52
'BRD8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S1368.  Gene #137: 'BRD8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BRD8 MUTATED 17 4 11
BRD8 WILD-TYPE 200 71 88
'BRD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 0.84

Table S1369.  Gene #137: 'BRD8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BRD8 MUTATED 12 9 5
BRD8 WILD-TYPE 109 99 67
'BRD8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.54

Table S1370.  Gene #137: 'BRD8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BRD8 MUTATED 8 3 3 8 4
BRD8 WILD-TYPE 80 63 42 47 43
'FOXN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0054

Table S1371.  Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FOXN3 MUTATED 0 11 2 0
FOXN3 WILD-TYPE 204 126 45 3

Figure S686.  Get High-res Image Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FOXN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00731 (Fisher's exact test), Q value = 0.048

Table S1372.  Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FOXN3 MUTATED 0 8 2 0 1
FOXN3 WILD-TYPE 39 88 42 88 79

Figure S687.  Get High-res Image Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FOXN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 0.19

Table S1373.  Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FOXN3 MUTATED 1 6 2 0 2
FOXN3 WILD-TYPE 25 73 71 82 56
'FOXN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00099 (Fisher's exact test), Q value = 0.016

Table S1374.  Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FOXN3 MUTATED 1 7 2 1
FOXN3 WILD-TYPE 126 44 69 68

Figure S688.  Get High-res Image Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S1375.  Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FOXN3 MUTATED 0 4 5 0 2
FOXN3 WILD-TYPE 84 81 80 69 45

Figure S689.  Get High-res Image Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FOXN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S1376.  Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FOXN3 MUTATED 2 3 1 5
FOXN3 WILD-TYPE 93 71 120 75
'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.11

Table S1377.  Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FOXN3 MUTATED 1 6 3 1 2 0
FOXN3 WILD-TYPE 51 58 69 103 38 59

Figure S690.  Get High-res Image Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FOXN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.089 (Fisher's exact test), Q value = 0.2

Table S1378.  Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FOXN3 MUTATED 11 0 2
FOXN3 WILD-TYPE 206 75 97
'FOXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.2

Table S1379.  Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FOXN3 MUTATED 3 2 6
FOXN3 WILD-TYPE 118 106 66
'FOXN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.099

Table S1380.  Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FOXN3 MUTATED 4 0 4 0 3
FOXN3 WILD-TYPE 84 66 41 55 44

Figure S691.  Get High-res Image Gene #138: 'FOXN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00198 (Fisher's exact test), Q value = 0.023

Table S1381.  Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SPG20 MUTATED 4 16 2 0
SPG20 WILD-TYPE 200 121 45 3

Figure S692.  Get High-res Image Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPG20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00239 (Fisher's exact test), Q value = 0.025

Table S1382.  Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SPG20 MUTATED 0 9 4 0 2
SPG20 WILD-TYPE 39 87 40 88 78

Figure S693.  Get High-res Image Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPG20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S1383.  Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SPG20 MUTATED 1 9 2 3 4
SPG20 WILD-TYPE 25 70 71 79 54
'SPG20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.071

Table S1384.  Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SPG20 MUTATED 4 8 5 2
SPG20 WILD-TYPE 123 43 66 67

Figure S694.  Get High-res Image Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00311 (Fisher's exact test), Q value = 0.03

Table S1385.  Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SPG20 MUTATED 1 4 12 1 3
SPG20 WILD-TYPE 83 81 73 68 44

Figure S695.  Get High-res Image Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPG20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.11

Table S1386.  Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SPG20 MUTATED 4 4 3 10
SPG20 WILD-TYPE 91 70 118 70

Figure S696.  Get High-res Image Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00566 (Fisher's exact test), Q value = 0.041

Table S1387.  Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SPG20 MUTATED 4 10 4 3 0 1
SPG20 WILD-TYPE 48 54 68 101 40 58

Figure S697.  Get High-res Image Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.086

Table S1388.  Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SPG20 MUTATED 18 3 1
SPG20 WILD-TYPE 199 72 98

Figure S698.  Get High-res Image Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SPG20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S1389.  Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SPG20 MUTATED 6 2 4
SPG20 WILD-TYPE 115 106 68
'SPG20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S1390.  Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SPG20 MUTATED 2 1 4 0 5
SPG20 WILD-TYPE 86 65 41 55 42

Figure S699.  Get High-res Image Gene #139: 'SPG20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WNK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S1391.  Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WNK4 MUTATED 3 20 1 0
WNK4 WILD-TYPE 201 117 46 3

Figure S700.  Get High-res Image Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00472 (Fisher's exact test), Q value = 0.037

Table S1392.  Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WNK4 MUTATED 0 13 1 3 2
WNK4 WILD-TYPE 39 83 43 85 78

Figure S701.  Get High-res Image Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WNK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.07

Table S1393.  Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WNK4 MUTATED 3 5 6 0 6
WNK4 WILD-TYPE 23 74 67 82 52

Figure S702.  Get High-res Image Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WNK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.088

Table S1394.  Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WNK4 MUTATED 7 8 4 1
WNK4 WILD-TYPE 120 43 67 68

Figure S703.  Get High-res Image Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WNK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S1395.  Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WNK4 MUTATED 4 5 9 4 1
WNK4 WILD-TYPE 80 80 76 65 46
'WNK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S1396.  Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WNK4 MUTATED 6 3 5 9
WNK4 WILD-TYPE 89 71 116 71
'WNK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.18

Table S1397.  Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WNK4 MUTATED 5 8 4 2 1 4
WNK4 WILD-TYPE 47 56 68 102 39 55
'WNK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S1398.  Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WNK4 MUTATED 17 2 5
WNK4 WILD-TYPE 200 73 94
'WNK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0683 (Fisher's exact test), Q value = 0.17

Table S1399.  Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WNK4 MUTATED 10 2 5
WNK4 WILD-TYPE 111 106 67
'WNK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S1400.  Gene #140: 'WNK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WNK4 MUTATED 5 1 4 2 5
WNK4 WILD-TYPE 83 65 41 53 42
'CBLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S1401.  Gene #141: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CBLL1 MUTATED 2 5 1 0
CBLL1 WILD-TYPE 202 132 46 3
'CBLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.41

Table S1402.  Gene #141: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CBLL1 MUTATED 0 4 1 1 0
CBLL1 WILD-TYPE 39 92 43 87 80
'CBLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.51

Table S1403.  Gene #141: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CBLL1 MUTATED 0 0 3 2 2
CBLL1 WILD-TYPE 26 79 70 80 56
'CBLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S1404.  Gene #141: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CBLL1 MUTATED 2 2 0 3
CBLL1 WILD-TYPE 125 49 71 66
'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S1405.  Gene #141: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CBLL1 MUTATED 1 3 1 0 3
CBLL1 WILD-TYPE 83 82 84 69 44
'CBLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 0.96

Table S1406.  Gene #141: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CBLL1 MUTATED 2 2 2 2
CBLL1 WILD-TYPE 93 72 119 78
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.71

Table S1407.  Gene #141: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CBLL1 MUTATED 1 1 1 3 2 0
CBLL1 WILD-TYPE 51 63 71 101 38 59
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S1408.  Gene #141: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CBLL1 MUTATED 3 3 2
CBLL1 WILD-TYPE 214 72 97
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.72

Table S1409.  Gene #141: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CBLL1 MUTATED 1 2 2
CBLL1 WILD-TYPE 120 106 70
'CBLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 0.68

Table S1410.  Gene #141: 'CBLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CBLL1 MUTATED 3 0 0 1 1
CBLL1 WILD-TYPE 85 66 45 54 46
'TTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.064

Table S1411.  Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TTF1 MUTATED 3 12 1 0
TTF1 WILD-TYPE 201 125 46 3

Figure S704.  Get High-res Image Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.12

Table S1412.  Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TTF1 MUTATED 1 7 2 1 0
TTF1 WILD-TYPE 38 89 42 87 80

Figure S705.  Get High-res Image Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S1413.  Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TTF1 MUTATED 0 7 2 2 2
TTF1 WILD-TYPE 26 72 71 80 56
'TTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.1

Table S1414.  Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TTF1 MUTATED 2 6 3 2
TTF1 WILD-TYPE 125 45 68 67

Figure S706.  Get High-res Image Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.21

Table S1415.  Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TTF1 MUTATED 3 2 7 0 2
TTF1 WILD-TYPE 81 83 78 69 45
'TTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.63

Table S1416.  Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TTF1 MUTATED 2 2 5 5
TTF1 WILD-TYPE 93 72 116 75
'TTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.2

Table S1417.  Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TTF1 MUTATED 4 5 3 1 0 3
TTF1 WILD-TYPE 48 59 69 103 40 56
'TTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.41

Table S1418.  Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TTF1 MUTATED 12 1 3
TTF1 WILD-TYPE 205 74 96
'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S1419.  Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TTF1 MUTATED 5 2 3
TTF1 WILD-TYPE 116 106 69
'TTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.368 (Fisher's exact test), Q value = 0.49

Table S1420.  Gene #142: 'TTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TTF1 MUTATED 3 1 1 1 4
TTF1 WILD-TYPE 85 65 44 54 43
'SCLT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00505 (Fisher's exact test), Q value = 0.039

Table S1421.  Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SCLT1 MUTATED 3 13 1 0
SCLT1 WILD-TYPE 201 124 46 3

Figure S707.  Get High-res Image Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SCLT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.067

Table S1422.  Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SCLT1 MUTATED 2 8 1 1 0
SCLT1 WILD-TYPE 37 88 43 87 80

Figure S708.  Get High-res Image Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SCLT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.5

Table S1423.  Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SCLT1 MUTATED 0 5 3 2 5
SCLT1 WILD-TYPE 26 74 70 80 53
'SCLT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0197 (Fisher's exact test), Q value = 0.083

Table S1424.  Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SCLT1 MUTATED 3 7 2 3
SCLT1 WILD-TYPE 124 44 69 66

Figure S709.  Get High-res Image Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.14

Table S1425.  Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SCLT1 MUTATED 1 1 7 5 1
SCLT1 WILD-TYPE 83 84 78 64 46

Figure S710.  Get High-res Image Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SCLT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.2

Table S1426.  Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SCLT1 MUTATED 6 3 1 5
SCLT1 WILD-TYPE 89 71 120 75
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.096

Table S1427.  Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SCLT1 MUTATED 5 6 2 2 2 0
SCLT1 WILD-TYPE 47 58 70 102 38 59

Figure S711.  Get High-res Image Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S1428.  Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SCLT1 MUTATED 13 3 1
SCLT1 WILD-TYPE 204 72 98
'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.037 (Fisher's exact test), Q value = 0.12

Table S1429.  Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SCLT1 MUTATED 6 0 3
SCLT1 WILD-TYPE 115 108 69

Figure S712.  Get High-res Image Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SCLT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0341 (Fisher's exact test), Q value = 0.11

Table S1430.  Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SCLT1 MUTATED 2 1 1 0 5
SCLT1 WILD-TYPE 86 65 44 55 42

Figure S713.  Get High-res Image Gene #143: 'SCLT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.15

Table S1431.  Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PALB2 MUTATED 2 8 1 0
PALB2 WILD-TYPE 202 129 46 3
'PALB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S1432.  Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PALB2 MUTATED 1 6 1 0 2
PALB2 WILD-TYPE 38 90 43 88 78
'PALB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.2

Table S1433.  Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PALB2 MUTATED 2 5 2 0 2
PALB2 WILD-TYPE 24 74 71 82 56
'PALB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00315 (Fisher's exact test), Q value = 0.03

Table S1434.  Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PALB2 MUTATED 2 6 3 0
PALB2 WILD-TYPE 125 45 68 69

Figure S714.  Get High-res Image Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PALB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.18

Table S1435.  Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PALB2 MUTATED 2 1 6 0 2
PALB2 WILD-TYPE 82 84 79 69 45
'PALB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 0.2

Table S1436.  Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PALB2 MUTATED 1 1 3 6
PALB2 WILD-TYPE 94 73 118 74
'PALB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.69

Table S1437.  Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PALB2 MUTATED 2 4 1 2 1 1
PALB2 WILD-TYPE 50 60 71 102 39 58
'PALB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S1438.  Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PALB2 MUTATED 8 2 1
PALB2 WILD-TYPE 209 73 98
'PALB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S1439.  Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PALB2 MUTATED 4 2 4
PALB2 WILD-TYPE 117 106 68
'PALB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 0.17

Table S1440.  Gene #144: 'PALB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PALB2 MUTATED 2 1 4 0 3
PALB2 WILD-TYPE 86 65 41 55 44
'ABCC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0031 (Fisher's exact test), Q value = 0.03

Table S1441.  Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABCC4 MUTATED 3 14 2 0
ABCC4 WILD-TYPE 201 123 45 3

Figure S715.  Get High-res Image Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 0.19

Table S1442.  Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABCC4 MUTATED 1 5 5 1 2
ABCC4 WILD-TYPE 38 91 39 87 78
'ABCC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.27

Table S1443.  Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABCC4 MUTATED 2 5 4 1 6
ABCC4 WILD-TYPE 24 74 69 81 52
'ABCC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S1444.  Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABCC4 MUTATED 7 6 4 1
ABCC4 WILD-TYPE 120 45 67 68
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.16

Table S1445.  Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABCC4 MUTATED 1 2 8 3 4
ABCC4 WILD-TYPE 83 83 77 66 43
'ABCC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.13

Table S1446.  Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABCC4 MUTATED 4 2 3 9
ABCC4 WILD-TYPE 91 72 118 71

Figure S716.  Get High-res Image Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.068

Table S1447.  Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABCC4 MUTATED 5 8 1 3 1 1
ABCC4 WILD-TYPE 47 56 71 101 39 58

Figure S717.  Get High-res Image Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.49

Table S1448.  Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABCC4 MUTATED 14 2 3
ABCC4 WILD-TYPE 203 73 96
'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.073

Table S1449.  Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABCC4 MUTATED 4 1 7
ABCC4 WILD-TYPE 117 107 65

Figure S718.  Get High-res Image Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ABCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S1450.  Gene #145: 'ABCC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABCC4 MUTATED 3 1 5 1 2
ABCC4 WILD-TYPE 85 65 40 54 45
'EAF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0033 (Fisher's exact test), Q value = 0.031

Table S1451.  Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EAF2 MUTATED 0 8 1 0
EAF2 WILD-TYPE 204 129 46 3

Figure S719.  Get High-res Image Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EAF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00613 (Fisher's exact test), Q value = 0.043

Table S1452.  Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EAF2 MUTATED 0 6 0 0 0
EAF2 WILD-TYPE 39 90 44 88 80

Figure S720.  Get High-res Image Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EAF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.751 (Fisher's exact test), Q value = 0.82

Table S1453.  Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EAF2 MUTATED 1 1 1 2 2
EAF2 WILD-TYPE 25 78 72 80 56
'EAF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.75

Table S1454.  Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EAF2 MUTATED 2 2 1 2
EAF2 WILD-TYPE 125 49 70 67
'EAF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S1455.  Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EAF2 MUTATED 1 1 4 1 2
EAF2 WILD-TYPE 83 84 81 68 45
'EAF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0827 (Fisher's exact test), Q value = 0.19

Table S1456.  Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EAF2 MUTATED 4 2 0 3
EAF2 WILD-TYPE 91 72 121 77
'EAF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.68

Table S1457.  Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EAF2 MUTATED 2 3 1 1 1 1
EAF2 WILD-TYPE 50 61 71 103 39 58
'EAF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S1458.  Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EAF2 MUTATED 7 1 1
EAF2 WILD-TYPE 210 74 98
'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S1459.  Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EAF2 MUTATED 1 1 3
EAF2 WILD-TYPE 120 107 69
'EAF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S1460.  Gene #146: 'EAF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EAF2 MUTATED 2 0 1 0 2
EAF2 WILD-TYPE 86 66 44 55 45
'FAAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.47

Table S1461.  Gene #147: 'FAAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAAH MUTATED 1 3 1 0
FAAH WILD-TYPE 203 134 46 3
'FAAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S1462.  Gene #147: 'FAAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAAH MUTATED 1 1 1 1 0
FAAH WILD-TYPE 38 95 43 87 80
'FAAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1463.  Gene #147: 'FAAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAAH MUTATED 0 1 1 2 1
FAAH WILD-TYPE 26 78 72 80 57
'FAAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S1464.  Gene #147: 'FAAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAAH MUTATED 1 1 1 2
FAAH WILD-TYPE 126 50 70 67
'FAAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.79

Table S1465.  Gene #147: 'FAAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAAH MUTATED 0 2 1 1 1
FAAH WILD-TYPE 84 83 84 68 46
'FAAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S1466.  Gene #147: 'FAAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAAH MUTATED 1 2 0 2
FAAH WILD-TYPE 94 72 121 78
'FAAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.76

Table S1467.  Gene #147: 'FAAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAAH MUTATED 1 0 2 2 0 0
FAAH WILD-TYPE 51 64 70 102 40 59
'FAAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1468.  Gene #147: 'FAAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAAH MUTATED 3 1 1
FAAH WILD-TYPE 214 74 98
'FAAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S1469.  Gene #147: 'FAAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAAH MUTATED 2 1 0
FAAH WILD-TYPE 119 107 72
'FAAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 0.82

Table S1470.  Gene #147: 'FAAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAAH MUTATED 1 0 0 1 1
FAAH WILD-TYPE 87 66 45 54 46
'BTBD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.0079

Table S1471.  Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BTBD7 MUTATED 2 15 3 0
BTBD7 WILD-TYPE 202 122 44 3

Figure S721.  Get High-res Image Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTBD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S1472.  Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BTBD7 MUTATED 3 12 1 0 0
BTBD7 WILD-TYPE 36 84 43 88 80

Figure S722.  Get High-res Image Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.14

Table S1473.  Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BTBD7 MUTATED 1 6 6 0 4
BTBD7 WILD-TYPE 25 73 67 82 54

Figure S723.  Get High-res Image Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BTBD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00035 (Fisher's exact test), Q value = 0.0084

Table S1474.  Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BTBD7 MUTATED 4 9 4 0
BTBD7 WILD-TYPE 123 42 67 69

Figure S724.  Get High-res Image Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00262 (Fisher's exact test), Q value = 0.027

Table S1475.  Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BTBD7 MUTATED 0 3 11 3 2
BTBD7 WILD-TYPE 84 82 74 66 45

Figure S725.  Get High-res Image Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BTBD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S1476.  Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BTBD7 MUTATED 6 2 0 11
BTBD7 WILD-TYPE 89 72 121 69

Figure S726.  Get High-res Image Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.12

Table S1477.  Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BTBD7 MUTATED 3 8 4 3 2 0
BTBD7 WILD-TYPE 49 56 68 101 38 59

Figure S727.  Get High-res Image Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0054 (Fisher's exact test), Q value = 0.04

Table S1478.  Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BTBD7 MUTATED 18 1 1
BTBD7 WILD-TYPE 199 74 98

Figure S728.  Get High-res Image Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S1479.  Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BTBD7 MUTATED 8 2 4
BTBD7 WILD-TYPE 113 106 68
'BTBD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 0.14

Table S1480.  Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BTBD7 MUTATED 6 1 2 0 5
BTBD7 WILD-TYPE 82 65 43 55 42

Figure S729.  Get High-res Image Gene #148: 'BTBD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAGEE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S1481.  Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAGEE2 MUTATED 3 7 1 0
MAGEE2 WILD-TYPE 201 130 46 3
'MAGEE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00653 (Fisher's exact test), Q value = 0.045

Table S1482.  Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAGEE2 MUTATED 0 8 2 0 1
MAGEE2 WILD-TYPE 39 88 42 88 79

Figure S730.  Get High-res Image Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAGEE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.53

Table S1483.  Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAGEE2 MUTATED 1 5 3 1 1
MAGEE2 WILD-TYPE 25 74 70 81 57
'MAGEE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S1484.  Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAGEE2 MUTATED 3 4 3 1
MAGEE2 WILD-TYPE 124 47 68 68
'MAGEE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S1485.  Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAGEE2 MUTATED 0 3 5 2 0
MAGEE2 WILD-TYPE 84 82 80 67 47
'MAGEE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S1486.  Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAGEE2 MUTATED 2 3 1 4
MAGEE2 WILD-TYPE 93 71 120 76
'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.55

Table S1487.  Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAGEE2 MUTATED 2 2 4 3 0 0
MAGEE2 WILD-TYPE 50 62 68 101 40 59
'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.44

Table S1488.  Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAGEE2 MUTATED 9 1 1
MAGEE2 WILD-TYPE 208 74 98
'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.61

Table S1489.  Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAGEE2 MUTATED 3 3 4
MAGEE2 WILD-TYPE 118 105 68
'MAGEE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S1490.  Gene #149: 'MAGEE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAGEE2 MUTATED 1 3 3 0 3
MAGEE2 WILD-TYPE 87 63 42 55 44
'DOCK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1491.  Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DOCK5 MUTATED 0 24 1 0
DOCK5 WILD-TYPE 204 113 46 3

Figure S731.  Get High-res Image Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DOCK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0041

Table S1492.  Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DOCK5 MUTATED 2 13 4 0 1
DOCK5 WILD-TYPE 37 83 40 88 79

Figure S732.  Get High-res Image Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DOCK5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S1493.  Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DOCK5 MUTATED 1 7 6 1 5
DOCK5 WILD-TYPE 25 72 67 81 53
'DOCK5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1494.  Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DOCK5 MUTATED 2 13 5 0
DOCK5 WILD-TYPE 125 38 66 69

Figure S733.  Get High-res Image Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.022

Table S1495.  Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DOCK5 MUTATED 1 3 13 4 1
DOCK5 WILD-TYPE 83 82 72 65 46

Figure S734.  Get High-res Image Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DOCK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1496.  Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DOCK5 MUTATED 8 0 1 13
DOCK5 WILD-TYPE 87 74 120 67

Figure S735.  Get High-res Image Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.14

Table S1497.  Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DOCK5 MUTATED 7 7 5 3 2 1
DOCK5 WILD-TYPE 45 57 67 101 38 58

Figure S736.  Get High-res Image Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00107 (Fisher's exact test), Q value = 0.016

Table S1498.  Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DOCK5 MUTATED 22 0 3
DOCK5 WILD-TYPE 195 75 96

Figure S737.  Get High-res Image Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DOCK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S1499.  Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DOCK5 MUTATED 10 3 4
DOCK5 WILD-TYPE 111 105 68
'DOCK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.0076

Table S1500.  Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DOCK5 MUTATED 7 0 2 0 8
DOCK5 WILD-TYPE 81 66 43 55 39

Figure S738.  Get High-res Image Gene #150: 'DOCK5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1501.  Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZFHX4 MUTATED 20 43 4 0
ZFHX4 WILD-TYPE 184 94 43 3

Figure S739.  Get High-res Image Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFHX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S1502.  Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZFHX4 MUTATED 2 26 11 13 4
ZFHX4 WILD-TYPE 37 70 33 75 76

Figure S740.  Get High-res Image Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFHX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S1503.  Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZFHX4 MUTATED 2 23 16 8 11
ZFHX4 WILD-TYPE 24 56 57 74 47

Figure S741.  Get High-res Image Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZFHX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00115 (Fisher's exact test), Q value = 0.017

Table S1504.  Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZFHX4 MUTATED 20 19 15 6
ZFHX4 WILD-TYPE 107 32 56 63

Figure S742.  Get High-res Image Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0038 (Fisher's exact test), Q value = 0.033

Table S1505.  Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZFHX4 MUTATED 9 11 27 9 9
ZFHX4 WILD-TYPE 75 74 58 60 38

Figure S743.  Get High-res Image Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00026 (Fisher's exact test), Q value = 0.0072

Table S1506.  Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZFHX4 MUTATED 11 9 17 28
ZFHX4 WILD-TYPE 84 65 104 52

Figure S744.  Get High-res Image Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0059 (Fisher's exact test), Q value = 0.042

Table S1507.  Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZFHX4 MUTATED 15 17 12 8 6 9
ZFHX4 WILD-TYPE 37 47 60 96 34 50

Figure S745.  Get High-res Image Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.072

Table S1508.  Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZFHX4 MUTATED 48 8 11
ZFHX4 WILD-TYPE 169 67 88

Figure S746.  Get High-res Image Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.12

Table S1509.  Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZFHX4 MUTATED 23 11 17
ZFHX4 WILD-TYPE 98 97 55

Figure S747.  Get High-res Image Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZFHX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00972 (Fisher's exact test), Q value = 0.056

Table S1510.  Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZFHX4 MUTATED 15 4 8 9 15
ZFHX4 WILD-TYPE 73 62 37 46 32

Figure S748.  Get High-res Image Gene #151: 'ZFHX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FHDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.21

Table S1511.  Gene #152: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FHDC1 MUTATED 5 11 1 0
FHDC1 WILD-TYPE 199 126 46 3
'FHDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.19

Table S1512.  Gene #152: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FHDC1 MUTATED 1 7 2 2 0
FHDC1 WILD-TYPE 38 89 42 86 80
'FHDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.61

Table S1513.  Gene #152: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FHDC1 MUTATED 1 7 2 3 3
FHDC1 WILD-TYPE 25 72 71 79 55
'FHDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S1514.  Gene #152: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FHDC1 MUTATED 4 3 6 3
FHDC1 WILD-TYPE 123 48 65 66
'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.29

Table S1515.  Gene #152: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FHDC1 MUTATED 1 3 8 3 2
FHDC1 WILD-TYPE 83 82 77 66 45
'FHDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.31

Table S1516.  Gene #152: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FHDC1 MUTATED 5 4 2 6
FHDC1 WILD-TYPE 90 70 119 74
'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.54

Table S1517.  Gene #152: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FHDC1 MUTATED 2 6 3 3 2 1
FHDC1 WILD-TYPE 50 58 69 101 38 58
'FHDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.66

Table S1518.  Gene #152: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FHDC1 MUTATED 12 2 3
FHDC1 WILD-TYPE 205 73 96
'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.37

Table S1519.  Gene #152: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FHDC1 MUTATED 3 3 5
FHDC1 WILD-TYPE 118 105 67
'FHDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S1520.  Gene #152: 'FHDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FHDC1 MUTATED 5 0 1 2 3
FHDC1 WILD-TYPE 83 66 44 53 44
'RB1CC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.075

Table S1521.  Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RB1CC1 MUTATED 2 9 3 0
RB1CC1 WILD-TYPE 202 128 44 3

Figure S749.  Get High-res Image Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RB1CC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0053 (Fisher's exact test), Q value = 0.04

Table S1522.  Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RB1CC1 MUTATED 0 10 0 2 1
RB1CC1 WILD-TYPE 39 86 44 86 79

Figure S750.  Get High-res Image Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RB1CC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 0.21

Table S1523.  Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RB1CC1 MUTATED 0 4 5 0 3
RB1CC1 WILD-TYPE 26 75 68 82 55
'RB1CC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00742 (Fisher's exact test), Q value = 0.048

Table S1524.  Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RB1CC1 MUTATED 1 6 3 2
RB1CC1 WILD-TYPE 126 45 68 67

Figure S751.  Get High-res Image Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RB1CC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00343 (Fisher's exact test), Q value = 0.032

Table S1525.  Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RB1CC1 MUTATED 0 1 9 3 2
RB1CC1 WILD-TYPE 84 84 76 66 45

Figure S752.  Get High-res Image Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RB1CC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00235 (Fisher's exact test), Q value = 0.025

Table S1526.  Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RB1CC1 MUTATED 4 1 1 9
RB1CC1 WILD-TYPE 91 73 120 71

Figure S753.  Get High-res Image Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.16

Table S1527.  Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RB1CC1 MUTATED 5 3 2 2 3 0
RB1CC1 WILD-TYPE 47 61 70 102 37 59
'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.5

Table S1528.  Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RB1CC1 MUTATED 11 1 3
RB1CC1 WILD-TYPE 206 74 96
'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.13

Table S1529.  Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RB1CC1 MUTATED 8 1 1
RB1CC1 WILD-TYPE 113 107 71

Figure S754.  Get High-res Image Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RB1CC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.065

Table S1530.  Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RB1CC1 MUTATED 4 0 1 0 5
RB1CC1 WILD-TYPE 84 66 44 55 42

Figure S755.  Get High-res Image Gene #153: 'RB1CC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRRG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.18

Table S1531.  Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRRG3 MUTATED 1 6 1 0
PRRG3 WILD-TYPE 203 131 46 3
'PRRG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.35

Table S1532.  Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PRRG3 MUTATED 1 1 2 0 2
PRRG3 WILD-TYPE 38 95 42 88 78
'PRRG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.48

Table S1533.  Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRRG3 MUTATED 1 3 2 0 1
PRRG3 WILD-TYPE 25 76 71 82 57
'PRRG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.13

Table S1534.  Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRRG3 MUTATED 2 4 1 0
PRRG3 WILD-TYPE 125 47 70 69

Figure S756.  Get High-res Image Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PRRG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0037 (Fisher's exact test), Q value = 0.033

Table S1535.  Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRRG3 MUTATED 0 0 5 0 2
PRRG3 WILD-TYPE 84 85 80 69 45

Figure S757.  Get High-res Image Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PRRG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S1536.  Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRRG3 MUTATED 1 0 3 3
PRRG3 WILD-TYPE 94 74 118 77
'PRRG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.13

Table S1537.  Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRRG3 MUTATED 1 5 1 1 0 0
PRRG3 WILD-TYPE 51 59 71 103 40 59

Figure S758.  Get High-res Image Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S1538.  Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRRG3 MUTATED 7 1 0
PRRG3 WILD-TYPE 210 74 99
'PRRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.08

Table S1539.  Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PRRG3 MUTATED 1 0 4
PRRG3 WILD-TYPE 120 108 68

Figure S759.  Get High-res Image Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PRRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0532 (Fisher's exact test), Q value = 0.15

Table S1540.  Gene #154: 'PRRG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PRRG3 MUTATED 1 0 3 0 1
PRRG3 WILD-TYPE 87 66 42 55 46
'KIAA1462 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S1541.  Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1462 MUTATED 9 14 1 0
KIAA1462 WILD-TYPE 195 123 46 3
'KIAA1462 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0434 (Fisher's exact test), Q value = 0.13

Table S1542.  Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1462 MUTATED 1 12 1 4 2
KIAA1462 WILD-TYPE 38 84 43 84 78

Figure S760.  Get High-res Image Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1462 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.15

Table S1543.  Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1462 MUTATED 1 8 5 1 7
KIAA1462 WILD-TYPE 25 71 68 81 51
'KIAA1462 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0199 (Fisher's exact test), Q value = 0.084

Table S1544.  Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1462 MUTATED 7 8 6 1
KIAA1462 WILD-TYPE 120 43 65 68

Figure S761.  Get High-res Image Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1462 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.37

Table S1545.  Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1462 MUTATED 3 3 9 3 4
KIAA1462 WILD-TYPE 81 82 76 66 43
'KIAA1462 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00704 (Fisher's exact test), Q value = 0.046

Table S1546.  Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1462 MUTATED 6 1 4 11
KIAA1462 WILD-TYPE 89 73 117 69

Figure S762.  Get High-res Image Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.09

Table S1547.  Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1462 MUTATED 8 6 4 3 0 3
KIAA1462 WILD-TYPE 44 58 68 101 40 56

Figure S763.  Get High-res Image Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.13

Table S1548.  Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1462 MUTATED 19 1 4
KIAA1462 WILD-TYPE 198 74 95

Figure S764.  Get High-res Image Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S1549.  Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1462 MUTATED 10 3 6
KIAA1462 WILD-TYPE 111 105 66
'KIAA1462 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S1550.  Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1462 MUTATED 3 1 4 3 8
KIAA1462 WILD-TYPE 85 65 41 52 39

Figure S765.  Get High-res Image Gene #155: 'KIAA1462 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S1551.  Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCNJ10 MUTATED 0 13 1 0
KCNJ10 WILD-TYPE 204 124 46 3

Figure S766.  Get High-res Image Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNJ10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.005

Table S1552.  Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCNJ10 MUTATED 0 10 1 0 0
KCNJ10 WILD-TYPE 39 86 43 88 80

Figure S767.  Get High-res Image Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNJ10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S1553.  Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCNJ10 MUTATED 0 4 4 1 4
KCNJ10 WILD-TYPE 26 75 69 81 54
'KCNJ10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1554.  Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCNJ10 MUTATED 0 11 1 1
KCNJ10 WILD-TYPE 127 40 70 68

Figure S768.  Get High-res Image Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.011

Table S1555.  Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCNJ10 MUTATED 0 1 8 0 3
KCNJ10 WILD-TYPE 84 84 77 69 44

Figure S769.  Get High-res Image Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S1556.  Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCNJ10 MUTATED 1 2 0 9
KCNJ10 WILD-TYPE 94 72 121 71

Figure S770.  Get High-res Image Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 0.029

Table S1557.  Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCNJ10 MUTATED 4 6 3 0 1 0
KCNJ10 WILD-TYPE 48 58 69 104 39 59

Figure S771.  Get High-res Image Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00839 (Fisher's exact test), Q value = 0.051

Table S1558.  Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCNJ10 MUTATED 13 1 0
KCNJ10 WILD-TYPE 204 74 99

Figure S772.  Get High-res Image Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00706 (Fisher's exact test), Q value = 0.046

Table S1559.  Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCNJ10 MUTATED 5 0 6
KCNJ10 WILD-TYPE 116 108 66

Figure S773.  Get High-res Image Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KCNJ10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00121 (Fisher's exact test), Q value = 0.018

Table S1560.  Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCNJ10 MUTATED 2 0 3 0 6
KCNJ10 WILD-TYPE 86 66 42 55 41

Figure S774.  Get High-res Image Gene #156: 'KCNJ10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GANAB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.14

Table S1561.  Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GANAB MUTATED 5 12 1 0
GANAB WILD-TYPE 199 125 46 3

Figure S775.  Get High-res Image Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GANAB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.067

Table S1562.  Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GANAB MUTATED 3 10 2 1 1
GANAB WILD-TYPE 36 86 42 87 79

Figure S776.  Get High-res Image Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GANAB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.29

Table S1563.  Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GANAB MUTATED 1 2 5 1 5
GANAB WILD-TYPE 25 77 68 81 53
'GANAB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00969 (Fisher's exact test), Q value = 0.056

Table S1564.  Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GANAB MUTATED 3 7 3 1
GANAB WILD-TYPE 124 44 68 68

Figure S777.  Get High-res Image Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GANAB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.11

Table S1565.  Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GANAB MUTATED 2 4 10 1 1
GANAB WILD-TYPE 82 81 75 68 46

Figure S778.  Get High-res Image Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GANAB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.44

Table S1566.  Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GANAB MUTATED 4 5 3 6
GANAB WILD-TYPE 91 69 118 74
'GANAB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.32

Table S1567.  Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GANAB MUTATED 2 3 7 5 1 0
GANAB WILD-TYPE 50 61 65 99 39 59
'GANAB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0887 (Fisher's exact test), Q value = 0.2

Table S1568.  Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GANAB MUTATED 14 3 1
GANAB WILD-TYPE 203 72 98
'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.13

Table S1569.  Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GANAB MUTATED 4 3 8
GANAB WILD-TYPE 117 105 64

Figure S779.  Get High-res Image Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GANAB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S1570.  Gene #157: 'GANAB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GANAB MUTATED 6 2 3 0 4
GANAB WILD-TYPE 82 64 42 55 43
'GPSM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S1571.  Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPSM3 MUTATED 5 6 1 0
GPSM3 WILD-TYPE 199 131 46 3
'GPSM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S1572.  Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPSM3 MUTATED 0 6 1 2 0
GPSM3 WILD-TYPE 39 90 43 86 80
'GPSM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S1573.  Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPSM3 MUTATED 0 4 1 0 3
GPSM3 WILD-TYPE 26 75 72 82 55
'GPSM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S1574.  Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPSM3 MUTATED 1 4 3 0
GPSM3 WILD-TYPE 126 47 68 69

Figure S780.  Get High-res Image Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPSM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.55

Table S1575.  Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPSM3 MUTATED 2 2 5 3 0
GPSM3 WILD-TYPE 82 83 80 66 47
'GPSM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S1576.  Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPSM3 MUTATED 4 1 2 5
GPSM3 WILD-TYPE 91 73 119 75
'GPSM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.58

Table S1577.  Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPSM3 MUTATED 2 3 4 1 1 1
GPSM3 WILD-TYPE 50 61 68 103 39 58
'GPSM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S1578.  Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPSM3 MUTATED 10 0 2
GPSM3 WILD-TYPE 207 75 97
'GPSM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S1579.  Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPSM3 MUTATED 3 1 2
GPSM3 WILD-TYPE 118 107 70
'GPSM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0595 (Fisher's exact test), Q value = 0.16

Table S1580.  Gene #158: 'GPSM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPSM3 MUTATED 3 0 0 0 3
GPSM3 WILD-TYPE 85 66 45 55 44
'WNT16 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S1581.  Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WNT16 MUTATED 0 12 0 0
WNT16 WILD-TYPE 204 125 47 3

Figure S781.  Get High-res Image Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WNT16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.12

Table S1582.  Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WNT16 MUTATED 0 7 1 0 2
WNT16 WILD-TYPE 39 89 43 88 78

Figure S782.  Get High-res Image Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WNT16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.72

Table S1583.  Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WNT16 MUTATED 1 3 1 1 2
WNT16 WILD-TYPE 25 76 72 81 56
'WNT16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0531 (Fisher's exact test), Q value = 0.15

Table S1584.  Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WNT16 MUTATED 1 4 2 1
WNT16 WILD-TYPE 126 47 69 68
'WNT16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.13

Table S1585.  Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WNT16 MUTATED 0 2 7 2 1
WNT16 WILD-TYPE 84 83 78 67 46

Figure S783.  Get High-res Image Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WNT16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.081

Table S1586.  Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WNT16 MUTATED 3 1 1 7
WNT16 WILD-TYPE 92 73 120 73

Figure S784.  Get High-res Image Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WNT16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.31

Table S1587.  Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WNT16 MUTATED 2 3 4 1 2 0
WNT16 WILD-TYPE 50 61 68 103 38 59
'WNT16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S1588.  Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WNT16 MUTATED 10 1 1
WNT16 WILD-TYPE 207 74 98
'WNT16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S1589.  Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WNT16 MUTATED 3 2 3
WNT16 WILD-TYPE 118 106 69
'WNT16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.13

Table S1590.  Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WNT16 MUTATED 3 0 1 0 4
WNT16 WILD-TYPE 85 66 44 55 43

Figure S785.  Get High-res Image Gene #159: 'WNT16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIRREL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.71

Table S1591.  Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIRREL MUTATED 10 9 1 0
KIRREL WILD-TYPE 194 128 46 3
'KIRREL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.2

Table S1592.  Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIRREL MUTATED 2 10 1 4 1
KIRREL WILD-TYPE 37 86 43 84 79
'KIRREL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 0.91

Table S1593.  Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIRREL MUTATED 0 4 3 5 2
KIRREL WILD-TYPE 26 75 70 77 56
'KIRREL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0915 (Fisher's exact test), Q value = 0.21

Table S1594.  Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIRREL MUTATED 2 3 3 6
KIRREL WILD-TYPE 125 48 68 63
'KIRREL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 0.17

Table S1595.  Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIRREL MUTATED 4 2 9 4 0
KIRREL WILD-TYPE 80 83 76 65 47
'KIRREL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.944 (Fisher's exact test), Q value = 0.97

Table S1596.  Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIRREL MUTATED 6 3 6 4
KIRREL WILD-TYPE 89 71 115 76
'KIRREL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S1597.  Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIRREL MUTATED 3 1 7 4 4 1
KIRREL WILD-TYPE 49 63 65 100 36 58
'KIRREL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 0.94

Table S1598.  Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIRREL MUTATED 12 4 4
KIRREL WILD-TYPE 205 71 95
'KIRREL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.17

Table S1599.  Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIRREL MUTATED 10 2 5
KIRREL WILD-TYPE 111 106 67
'KIRREL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.11

Table S1600.  Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIRREL MUTATED 6 1 2 1 7
KIRREL WILD-TYPE 82 65 43 54 40

Figure S786.  Get High-res Image Gene #160: 'KIRREL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MTMR9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0016 (Fisher's exact test), Q value = 0.02

Table S1601.  Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MTMR9 MUTATED 1 11 1 0
MTMR9 WILD-TYPE 203 126 46 3

Figure S787.  Get High-res Image Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTMR9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.11

Table S1602.  Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MTMR9 MUTATED 0 6 0 1 0
MTMR9 WILD-TYPE 39 90 44 87 80

Figure S788.  Get High-res Image Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTMR9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.12

Table S1603.  Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MTMR9 MUTATED 0 3 6 0 4
MTMR9 WILD-TYPE 26 76 67 82 54

Figure S789.  Get High-res Image Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MTMR9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1604.  Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MTMR9 MUTATED 2 10 0 1
MTMR9 WILD-TYPE 125 41 71 68

Figure S790.  Get High-res Image Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MTMR9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.39

Table S1605.  Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MTMR9 MUTATED 1 2 5 1 3
MTMR9 WILD-TYPE 83 83 80 68 44
'MTMR9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S1606.  Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MTMR9 MUTATED 4 2 1 5
MTMR9 WILD-TYPE 91 72 120 75
'MTMR9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.06

Table S1607.  Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MTMR9 MUTATED 1 7 3 1 1 0
MTMR9 WILD-TYPE 51 57 69 103 39 59

Figure S791.  Get High-res Image Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MTMR9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S1608.  Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MTMR9 MUTATED 11 1 1
MTMR9 WILD-TYPE 206 74 98
'MTMR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.6

Table S1609.  Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MTMR9 MUTATED 4 1 2
MTMR9 WILD-TYPE 117 107 70
'MTMR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S1610.  Gene #161: 'MTMR9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MTMR9 MUTATED 2 1 1 0 3
MTMR9 WILD-TYPE 86 65 44 55 44
'FAHD2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00326 (Fisher's exact test), Q value = 0.031

Table S1611.  Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAHD2B MUTATED 0 8 1 0
FAHD2B WILD-TYPE 204 129 46 3

Figure S792.  Get High-res Image Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAHD2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.13

Table S1612.  Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAHD2B MUTATED 1 5 1 0 0
FAHD2B WILD-TYPE 38 91 43 88 80

Figure S793.  Get High-res Image Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAHD2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.17

Table S1613.  Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAHD2B MUTATED 0 5 1 0 3
FAHD2B WILD-TYPE 26 74 72 82 55
'FAHD2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00427 (Fisher's exact test), Q value = 0.035

Table S1614.  Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAHD2B MUTATED 1 5 3 0
FAHD2B WILD-TYPE 126 46 68 69

Figure S794.  Get High-res Image Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0994 (Fisher's exact test), Q value = 0.22

Table S1615.  Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAHD2B MUTATED 0 1 5 1 1
FAHD2B WILD-TYPE 84 84 80 68 46
'FAHD2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.08

Table S1616.  Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAHD2B MUTATED 2 1 0 5
FAHD2B WILD-TYPE 93 73 121 75

Figure S795.  Get High-res Image Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.29

Table S1617.  Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAHD2B MUTATED 3 3 2 1 0 0
FAHD2B WILD-TYPE 49 61 70 103 40 59
'FAHD2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S1618.  Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAHD2B MUTATED 8 0 1
FAHD2B WILD-TYPE 209 75 98
'FAHD2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S1619.  Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAHD2B MUTATED 2 2 2
FAHD2B WILD-TYPE 119 106 70
'FAHD2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S1620.  Gene #162: 'FAHD2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAHD2B MUTATED 3 0 1 0 2
FAHD2B WILD-TYPE 85 66 44 55 45
'KLRK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.11

Table S1621.  Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KLRK1 MUTATED 0 5 0 0
KLRK1 WILD-TYPE 204 132 47 3

Figure S796.  Get High-res Image Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLRK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.17

Table S1622.  Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KLRK1 MUTATED 0 4 0 0 0
KLRK1 WILD-TYPE 39 92 44 88 80
'KLRK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.802 (Fisher's exact test), Q value = 0.86

Table S1623.  Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KLRK1 MUTATED 0 1 0 2 1
KLRK1 WILD-TYPE 26 78 73 80 57
'KLRK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0387 (Fisher's exact test), Q value = 0.12

Table S1624.  Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KLRK1 MUTATED 0 2 0 2
KLRK1 WILD-TYPE 127 49 71 67

Figure S797.  Get High-res Image Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KLRK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S1625.  Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KLRK1 MUTATED 0 1 2 0 2
KLRK1 WILD-TYPE 84 84 83 69 45
'KLRK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0276 (Fisher's exact test), Q value = 0.1

Table S1626.  Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KLRK1 MUTATED 0 2 0 3
KLRK1 WILD-TYPE 95 72 121 77

Figure S798.  Get High-res Image Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KLRK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0197 (Fisher's exact test), Q value = 0.083

Table S1627.  Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KLRK1 MUTATED 3 1 0 0 1 0
KLRK1 WILD-TYPE 49 63 72 104 39 59

Figure S799.  Get High-res Image Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KLRK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S1628.  Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KLRK1 MUTATED 4 1 0
KLRK1 WILD-TYPE 213 74 99
'KLRK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S1629.  Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KLRK1 MUTATED 3 0 1
KLRK1 WILD-TYPE 118 108 71
'KLRK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0367 (Fisher's exact test), Q value = 0.12

Table S1630.  Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KLRK1 MUTATED 1 0 0 0 3
KLRK1 WILD-TYPE 87 66 45 55 44

Figure S800.  Get High-res Image Gene #163: 'KLRK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KLC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S1631.  Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KLC2 MUTATED 2 10 2 0
KLC2 WILD-TYPE 202 127 45 3

Figure S801.  Get High-res Image Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.068

Table S1632.  Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KLC2 MUTATED 4 5 2 0 1
KLC2 WILD-TYPE 35 91 42 88 79

Figure S802.  Get High-res Image Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S1633.  Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KLC2 MUTATED 1 5 2 1 1
KLC2 WILD-TYPE 25 74 71 81 57
'KLC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S1634.  Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KLC2 MUTATED 2 3 4 1
KLC2 WILD-TYPE 125 48 67 68
'KLC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.12

Table S1635.  Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KLC2 MUTATED 1 1 7 2 0
KLC2 WILD-TYPE 83 84 78 67 47

Figure S803.  Get High-res Image Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KLC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 0.14

Table S1636.  Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KLC2 MUTATED 3 1 1 6
KLC2 WILD-TYPE 92 73 120 74
'KLC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S1637.  Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KLC2 MUTATED 2 5 3 1 2 1
KLC2 WILD-TYPE 50 59 69 103 38 58
'KLC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.43

Table S1638.  Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KLC2 MUTATED 10 3 1
KLC2 WILD-TYPE 207 72 98
'KLC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.074

Table S1639.  Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KLC2 MUTATED 5 0 5
KLC2 WILD-TYPE 116 108 67

Figure S804.  Get High-res Image Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KLC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.28

Table S1640.  Gene #164: 'KLC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KLC2 MUTATED 3 0 3 1 3
KLC2 WILD-TYPE 85 66 42 54 44
'WDR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1641.  Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WDR7 MUTATED 1 19 1 0
WDR7 WILD-TYPE 203 118 46 3

Figure S805.  Get High-res Image Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WDR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.11

Table S1642.  Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WDR7 MUTATED 1 10 3 1 2
WDR7 WILD-TYPE 38 86 41 87 78

Figure S806.  Get High-res Image Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WDR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0572 (Fisher's exact test), Q value = 0.16

Table S1643.  Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WDR7 MUTATED 1 8 8 2 1
WDR7 WILD-TYPE 25 71 65 80 57
'WDR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S1644.  Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WDR7 MUTATED 2 10 6 2
WDR7 WILD-TYPE 125 41 65 67

Figure S807.  Get High-res Image Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.099

Table S1645.  Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WDR7 MUTATED 1 5 8 1 5
WDR7 WILD-TYPE 83 80 77 68 42

Figure S808.  Get High-res Image Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WDR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.1

Table S1646.  Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WDR7 MUTATED 4 3 3 10
WDR7 WILD-TYPE 91 71 118 70

Figure S809.  Get High-res Image Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.14

Table S1647.  Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WDR7 MUTATED 4 9 2 5 1 1
WDR7 WILD-TYPE 48 55 70 99 39 58

Figure S810.  Get High-res Image Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S1648.  Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WDR7 MUTATED 16 4 2
WDR7 WILD-TYPE 201 71 97
'WDR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.11

Table S1649.  Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WDR7 MUTATED 6 2 8
WDR7 WILD-TYPE 115 106 64

Figure S811.  Get High-res Image Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WDR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0325 (Fisher's exact test), Q value = 0.11

Table S1650.  Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WDR7 MUTATED 4 2 5 0 5
WDR7 WILD-TYPE 84 64 40 55 42

Figure S812.  Get High-res Image Gene #165: 'WDR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TCHP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0465 (Fisher's exact test), Q value = 0.14

Table S1651.  Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TCHP MUTATED 2 8 2 0
TCHP WILD-TYPE 202 129 45 3

Figure S813.  Get High-res Image Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TCHP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S1652.  Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TCHP MUTATED 2 4 2 2 0
TCHP WILD-TYPE 37 92 42 86 80
'TCHP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 0.83

Table S1653.  Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TCHP MUTATED 1 3 3 1 2
TCHP WILD-TYPE 25 76 70 81 56
'TCHP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0046

Table S1654.  Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TCHP MUTATED 1 7 0 2
TCHP WILD-TYPE 126 44 71 67

Figure S814.  Get High-res Image Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TCHP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.55

Table S1655.  Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TCHP MUTATED 2 1 5 1 1
TCHP WILD-TYPE 82 84 80 68 46
'TCHP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S1656.  Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TCHP MUTATED 2 1 2 5
TCHP WILD-TYPE 93 73 119 75
'TCHP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S1657.  Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TCHP MUTATED 4 3 1 1 2 1
TCHP WILD-TYPE 48 61 71 103 38 58
'TCHP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S1658.  Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TCHP MUTATED 9 0 3
TCHP WILD-TYPE 208 75 96
'TCHP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.58

Table S1659.  Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TCHP MUTATED 6 2 2
TCHP WILD-TYPE 115 106 70
'TCHP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.31

Table S1660.  Gene #166: 'TCHP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TCHP MUTATED 5 0 1 1 3
TCHP WILD-TYPE 83 66 44 54 44
'SNRK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 0.023

Table S1661.  Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SNRK MUTATED 3 13 0 0
SNRK WILD-TYPE 201 124 47 3

Figure S815.  Get High-res Image Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SNRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S1662.  Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SNRK MUTATED 0 6 2 2 3
SNRK WILD-TYPE 39 90 42 86 77
'SNRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.91

Table S1663.  Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SNRK MUTATED 1 4 2 4 4
SNRK WILD-TYPE 25 75 71 78 54
'SNRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.45

Table S1664.  Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SNRK MUTATED 4 4 2 5
SNRK WILD-TYPE 123 47 69 64
'SNRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.16

Table S1665.  Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SNRK MUTATED 2 8 3 1 0
SNRK WILD-TYPE 82 77 82 68 47
'SNRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.59

Table S1666.  Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SNRK MUTATED 2 5 4 3
SNRK WILD-TYPE 93 69 117 77
'SNRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.31

Table S1667.  Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SNRK MUTATED 2 5 1 7 0 1
SNRK WILD-TYPE 50 59 71 97 40 58
'SNRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.73

Table S1668.  Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SNRK MUTATED 11 2 3
SNRK WILD-TYPE 206 73 96
'SNRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.34

Table S1669.  Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SNRK MUTATED 2 6 4
SNRK WILD-TYPE 119 102 68
'SNRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.87

Table S1670.  Gene #167: 'SNRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SNRK MUTATED 3 2 1 3 3
SNRK WILD-TYPE 85 64 44 52 44
'SNAPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S1671.  Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SNAPC1 MUTATED 1 7 0 0
SNAPC1 WILD-TYPE 203 130 47 3

Figure S816.  Get High-res Image Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SNAPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00812 (Fisher's exact test), Q value = 0.05

Table S1672.  Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SNAPC1 MUTATED 0 6 2 0 0
SNAPC1 WILD-TYPE 39 90 42 88 80

Figure S817.  Get High-res Image Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNAPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S1673.  Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SNAPC1 MUTATED 1 3 1 0 0
SNAPC1 WILD-TYPE 25 76 72 82 58
'SNAPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.59

Table S1674.  Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SNAPC1 MUTATED 1 2 1 1
SNAPC1 WILD-TYPE 126 49 70 68
'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.17

Table S1675.  Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SNAPC1 MUTATED 0 1 5 2 0
SNAPC1 WILD-TYPE 84 84 80 67 47
'SNAPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.064 (Fisher's exact test), Q value = 0.17

Table S1676.  Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SNAPC1 MUTATED 2 2 0 4
SNAPC1 WILD-TYPE 93 72 121 76
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S1677.  Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SNAPC1 MUTATED 2 3 2 0 1 0
SNAPC1 WILD-TYPE 50 61 70 104 39 59
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.39

Table S1678.  Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SNAPC1 MUTATED 7 0 1
SNAPC1 WILD-TYPE 210 75 98
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.088 (Fisher's exact test), Q value = 0.2

Table S1679.  Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SNAPC1 MUTATED 5 0 2
SNAPC1 WILD-TYPE 116 108 70
'SNAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S1680.  Gene #168: 'SNAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SNAPC1 MUTATED 3 0 2 0 2
SNAPC1 WILD-TYPE 85 66 43 55 45
'ALG10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S1681.  Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ALG10 MUTATED 4 9 1 0
ALG10 WILD-TYPE 200 128 46 3
'ALG10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.13

Table S1682.  Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ALG10 MUTATED 0 7 2 2 0
ALG10 WILD-TYPE 39 89 42 86 80

Figure S818.  Get High-res Image Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALG10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.49

Table S1683.  Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ALG10 MUTATED 1 5 5 1 2
ALG10 WILD-TYPE 25 74 68 81 56
'ALG10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.054 (Fisher's exact test), Q value = 0.15

Table S1684.  Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ALG10 MUTATED 6 5 3 0
ALG10 WILD-TYPE 121 46 68 69
'ALG10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S1685.  Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ALG10 MUTATED 1 3 6 2 0
ALG10 WILD-TYPE 83 82 79 67 47
'ALG10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.48

Table S1686.  Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ALG10 MUTATED 3 2 2 5
ALG10 WILD-TYPE 92 72 119 75
'ALG10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S1687.  Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ALG10 MUTATED 2 6 2 2 0 2
ALG10 WILD-TYPE 50 58 70 102 40 57
'ALG10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S1688.  Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ALG10 MUTATED 11 1 2
ALG10 WILD-TYPE 206 74 97
'ALG10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 0.22

Table S1689.  Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ALG10 MUTATED 2 2 5
ALG10 WILD-TYPE 119 106 67
'ALG10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.64

Table S1690.  Gene #169: 'ALG10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ALG10 MUTATED 2 1 3 1 2
ALG10 WILD-TYPE 86 65 42 54 45
'HDLBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.11

Table S1691.  Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HDLBP MUTATED 9 18 3 0
HDLBP WILD-TYPE 195 119 44 3

Figure S819.  Get High-res Image Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HDLBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.12

Table S1692.  Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HDLBP MUTATED 3 12 5 3 2
HDLBP WILD-TYPE 36 84 39 85 78

Figure S820.  Get High-res Image Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HDLBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.1

Table S1693.  Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HDLBP MUTATED 4 9 6 1 6
HDLBP WILD-TYPE 22 70 67 81 52

Figure S821.  Get High-res Image Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HDLBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S1694.  Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HDLBP MUTATED 9 9 4 4
HDLBP WILD-TYPE 118 42 67 65
'HDLBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S1695.  Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HDLBP MUTATED 5 5 15 2 4
HDLBP WILD-TYPE 79 80 70 67 43

Figure S822.  Get High-res Image Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HDLBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.079

Table S1696.  Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HDLBP MUTATED 7 4 6 14
HDLBP WILD-TYPE 88 70 115 66

Figure S823.  Get High-res Image Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.0089

Table S1697.  Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HDLBP MUTATED 10 10 6 3 0 2
HDLBP WILD-TYPE 42 54 66 101 40 57

Figure S824.  Get High-res Image Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0344 (Fisher's exact test), Q value = 0.12

Table S1698.  Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HDLBP MUTATED 24 2 5
HDLBP WILD-TYPE 193 73 94

Figure S825.  Get High-res Image Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.13

Table S1699.  Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HDLBP MUTATED 13 3 7
HDLBP WILD-TYPE 108 105 65

Figure S826.  Get High-res Image Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HDLBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S1700.  Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HDLBP MUTATED 7 1 4 2 9
HDLBP WILD-TYPE 81 65 41 53 38

Figure S827.  Get High-res Image Gene #170: 'HDLBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GRINA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00421 (Fisher's exact test), Q value = 0.035

Table S1701.  Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GRINA MUTATED 0 7 2 0
GRINA WILD-TYPE 204 130 45 3

Figure S828.  Get High-res Image Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GRINA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S1702.  Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GRINA MUTATED 1 5 1 0 1
GRINA WILD-TYPE 38 91 43 88 79
'GRINA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S1703.  Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GRINA MUTATED 1 4 2 0 2
GRINA WILD-TYPE 25 75 71 82 56
'GRINA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 0.12

Table S1704.  Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GRINA MUTATED 2 4 3 0
GRINA WILD-TYPE 125 47 68 69

Figure S829.  Get High-res Image Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GRINA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.11

Table S1705.  Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GRINA MUTATED 0 0 5 2 1
GRINA WILD-TYPE 84 85 80 67 46

Figure S830.  Get High-res Image Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GRINA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0395 (Fisher's exact test), Q value = 0.13

Table S1706.  Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GRINA MUTATED 2 0 1 5
GRINA WILD-TYPE 93 74 120 75

Figure S831.  Get High-res Image Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GRINA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 0.84

Table S1707.  Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GRINA MUTATED 2 2 2 2 1 0
GRINA WILD-TYPE 50 62 70 102 39 59
'GRINA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0982 (Fisher's exact test), Q value = 0.21

Table S1708.  Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GRINA MUTATED 8 1 0
GRINA WILD-TYPE 209 74 99
'GRINA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S1709.  Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GRINA MUTATED 3 1 4
GRINA WILD-TYPE 118 107 68
'GRINA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S1710.  Gene #171: 'GRINA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GRINA MUTATED 3 1 1 0 3
GRINA WILD-TYPE 85 65 44 55 44
'RAB42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.1

Table S1711.  Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RAB42 MUTATED 0 5 0 0
RAB42 WILD-TYPE 204 132 47 3

Figure S832.  Get High-res Image Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAB42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.17

Table S1712.  Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RAB42 MUTATED 0 4 0 0 0
RAB42 WILD-TYPE 39 92 44 88 80
'RAB42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1713.  Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RAB42 MUTATED 0 1 1 1 1
RAB42 WILD-TYPE 26 78 72 81 57
'RAB42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.38

Table S1714.  Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RAB42 MUTATED 1 2 0 1
RAB42 WILD-TYPE 126 49 71 68
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S1715.  Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RAB42 MUTATED 0 1 1 1 2
RAB42 WILD-TYPE 84 84 84 68 45
'RAB42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S1716.  Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RAB42 MUTATED 2 1 0 2
RAB42 WILD-TYPE 93 73 121 78
'RAB42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.11

Table S1717.  Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RAB42 MUTATED 2 0 1 0 2 0
RAB42 WILD-TYPE 50 64 71 104 38 59

Figure S833.  Get High-res Image Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RAB42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1718.  Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RAB42 MUTATED 3 1 1
RAB42 WILD-TYPE 214 74 98
'RAB42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1719.  Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RAB42 MUTATED 2 1 1
RAB42 WILD-TYPE 119 107 71
'RAB42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0919 (Fisher's exact test), Q value = 0.21

Table S1720.  Gene #172: 'RAB42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RAB42 MUTATED 4 0 0 0 0
RAB42 WILD-TYPE 84 66 45 55 47
'SAMD9L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.085

Table S1721.  Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SAMD9L MUTATED 5 14 3 0
SAMD9L WILD-TYPE 199 123 44 3

Figure S834.  Get High-res Image Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SAMD9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S1722.  Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SAMD9L MUTATED 3 7 6 2 1
SAMD9L WILD-TYPE 36 89 38 86 79

Figure S835.  Get High-res Image Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SAMD9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.47

Table S1723.  Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SAMD9L MUTATED 2 8 5 2 4
SAMD9L WILD-TYPE 24 71 68 80 54
'SAMD9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00248 (Fisher's exact test), Q value = 0.026

Table S1724.  Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SAMD9L MUTATED 4 10 4 3
SAMD9L WILD-TYPE 123 41 67 66

Figure S836.  Get High-res Image Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.13

Table S1725.  Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SAMD9L MUTATED 3 3 11 2 1
SAMD9L WILD-TYPE 81 82 74 67 46

Figure S837.  Get High-res Image Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SAMD9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.65

Table S1726.  Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SAMD9L MUTATED 4 3 6 7
SAMD9L WILD-TYPE 91 71 115 73
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.082

Table S1727.  Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SAMD9L MUTATED 5 8 4 1 1 3
SAMD9L WILD-TYPE 47 56 68 103 39 56

Figure S838.  Get High-res Image Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SAMD9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S1728.  Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SAMD9L MUTATED 17 2 3
SAMD9L WILD-TYPE 200 73 96
'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00563 (Fisher's exact test), Q value = 0.041

Table S1729.  Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SAMD9L MUTATED 8 1 8
SAMD9L WILD-TYPE 113 107 64

Figure S839.  Get High-res Image Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SAMD9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0525 (Fisher's exact test), Q value = 0.15

Table S1730.  Gene #173: 'SAMD9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SAMD9L MUTATED 5 1 6 1 4
SAMD9L WILD-TYPE 83 65 39 54 43
'GLT6D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.78

Table S1731.  Gene #174: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GLT6D1 MUTATED 6 6 2 0
GLT6D1 WILD-TYPE 198 131 45 3
'GLT6D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.72

Table S1732.  Gene #174: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GLT6D1 MUTATED 2 4 3 2 2
GLT6D1 WILD-TYPE 37 92 41 86 78
'GLT6D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S1733.  Gene #174: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GLT6D1 MUTATED 1 3 3 0 3
GLT6D1 WILD-TYPE 25 76 70 82 55
'GLT6D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.44

Table S1734.  Gene #174: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GLT6D1 MUTATED 6 2 2 0
GLT6D1 WILD-TYPE 121 49 69 69
'GLT6D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 0.81

Table S1735.  Gene #174: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GLT6D1 MUTATED 2 5 4 2 1
GLT6D1 WILD-TYPE 82 80 81 67 46
'GLT6D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S1736.  Gene #174: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GLT6D1 MUTATED 2 6 2 4
GLT6D1 WILD-TYPE 93 68 119 76
'GLT6D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 0.73

Table S1737.  Gene #174: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GLT6D1 MUTATED 0 2 3 6 1 2
GLT6D1 WILD-TYPE 52 62 69 98 39 57
'GLT6D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 0.82

Table S1738.  Gene #174: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GLT6D1 MUTATED 9 3 2
GLT6D1 WILD-TYPE 208 72 97
'GLT6D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.74

Table S1739.  Gene #174: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GLT6D1 MUTATED 2 4 2
GLT6D1 WILD-TYPE 119 104 70
'GLT6D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.38

Table S1740.  Gene #174: 'GLT6D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GLT6D1 MUTATED 5 1 0 2 0
GLT6D1 WILD-TYPE 83 65 45 53 47
'SLC22A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.07

Table S1741.  Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC22A6 MUTATED 2 10 2 0
SLC22A6 WILD-TYPE 202 127 45 3

Figure S840.  Get High-res Image Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC22A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 0.21

Table S1742.  Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC22A6 MUTATED 0 7 1 1 1
SLC22A6 WILD-TYPE 39 89 43 87 79
'SLC22A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.85

Table S1743.  Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC22A6 MUTATED 1 2 3 3 4
SLC22A6 WILD-TYPE 25 77 70 79 54
'SLC22A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 0.17

Table S1744.  Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC22A6 MUTATED 3 5 1 4
SLC22A6 WILD-TYPE 124 46 70 65
'SLC22A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S1745.  Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC22A6 MUTATED 1 4 6 1 2
SLC22A6 WILD-TYPE 83 81 79 68 45
'SLC22A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S1746.  Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC22A6 MUTATED 4 4 1 5
SLC22A6 WILD-TYPE 91 70 120 75
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S1747.  Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC22A6 MUTATED 2 6 2 2 1 1
SLC22A6 WILD-TYPE 50 58 70 102 39 58
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 0.82

Table S1748.  Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC22A6 MUTATED 9 3 2
SLC22A6 WILD-TYPE 208 72 97
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.17

Table S1749.  Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC22A6 MUTATED 3 1 5
SLC22A6 WILD-TYPE 118 107 67
'SLC22A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.44

Table S1750.  Gene #175: 'SLC22A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC22A6 MUTATED 3 1 2 0 3
SLC22A6 WILD-TYPE 85 65 43 55 44
'SVIL MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1751.  Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SVIL MUTATED 4 25 1 0
SVIL WILD-TYPE 200 112 46 3

Figure S841.  Get High-res Image Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SVIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0044

Table S1752.  Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SVIL MUTATED 2 16 2 0 4
SVIL WILD-TYPE 37 80 42 88 76

Figure S842.  Get High-res Image Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SVIL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S1753.  Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SVIL MUTATED 4 3 9 4 4
SVIL WILD-TYPE 22 76 64 78 54
'SVIL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00145 (Fisher's exact test), Q value = 0.019

Table S1754.  Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SVIL MUTATED 6 11 2 5
SVIL WILD-TYPE 121 40 69 64

Figure S843.  Get High-res Image Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00414 (Fisher's exact test), Q value = 0.035

Table S1755.  Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SVIL MUTATED 1 5 14 4 4
SVIL WILD-TYPE 83 80 71 65 43

Figure S844.  Get High-res Image Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SVIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00149 (Fisher's exact test), Q value = 0.02

Table S1756.  Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SVIL MUTATED 8 5 2 13
SVIL WILD-TYPE 87 69 119 67

Figure S845.  Get High-res Image Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SVIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S1757.  Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SVIL MUTATED 6 9 5 6 3 1
SVIL WILD-TYPE 46 55 67 98 37 58
'SVIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0995 (Fisher's exact test), Q value = 0.22

Table S1758.  Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SVIL MUTATED 21 6 3
SVIL WILD-TYPE 196 69 96
'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.13

Table S1759.  Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SVIL MUTATED 12 3 8
SVIL WILD-TYPE 109 105 64

Figure S846.  Get High-res Image Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SVIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00657 (Fisher's exact test), Q value = 0.045

Table S1760.  Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SVIL MUTATED 6 4 4 0 9
SVIL WILD-TYPE 82 62 41 55 38

Figure S847.  Get High-res Image Gene #176: 'SVIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC148 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S1761.  Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCDC148 MUTATED 2 6 0 0
CCDC148 WILD-TYPE 202 131 47 3
'CCDC148 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00904 (Fisher's exact test), Q value = 0.054

Table S1762.  Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCDC148 MUTATED 0 7 0 0 1
CCDC148 WILD-TYPE 39 89 44 88 79

Figure S848.  Get High-res Image Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC148 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.39

Table S1763.  Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCDC148 MUTATED 1 0 3 1 1
CCDC148 WILD-TYPE 25 79 70 81 57
'CCDC148 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S1764.  Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCDC148 MUTATED 2 3 0 1
CCDC148 WILD-TYPE 125 48 71 68
'CCDC148 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0435 (Fisher's exact test), Q value = 0.13

Table S1765.  Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCDC148 MUTATED 0 0 4 3 1
CCDC148 WILD-TYPE 84 85 81 66 46

Figure S849.  Get High-res Image Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC148 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0088 (Fisher's exact test), Q value = 0.053

Table S1766.  Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCDC148 MUTATED 4 0 0 4
CCDC148 WILD-TYPE 91 74 121 76

Figure S850.  Get High-res Image Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S1767.  Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCDC148 MUTATED 4 2 1 0 1 0
CCDC148 WILD-TYPE 48 62 71 104 39 59

Figure S851.  Get High-res Image Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC148 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S1768.  Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCDC148 MUTATED 7 1 0
CCDC148 WILD-TYPE 210 74 99
'CCDC148 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.18

Table S1769.  Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCDC148 MUTATED 4 0 3
CCDC148 WILD-TYPE 117 108 69
'CCDC148 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 0.021

Table S1770.  Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCDC148 MUTATED 0 1 1 0 5
CCDC148 WILD-TYPE 88 65 44 55 42

Figure S852.  Get High-res Image Gene #177: 'CCDC148 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MOBKL1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.18

Table S1771.  Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MOBKL1A MUTATED 0 4 1 0
MOBKL1A WILD-TYPE 204 133 46 3
'MOBKL1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S1772.  Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MOBKL1A MUTATED 0 3 0 0 1
MOBKL1A WILD-TYPE 39 93 44 88 79
'MOBKL1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 0.99

Table S1773.  Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MOBKL1A MUTATED 0 2 1 1 1
MOBKL1A WILD-TYPE 26 77 72 81 57
'MOBKL1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.59

Table S1774.  Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MOBKL1A MUTATED 1 2 1 1
MOBKL1A WILD-TYPE 126 49 70 68
'MOBKL1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S1775.  Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MOBKL1A MUTATED 0 1 3 0 2
MOBKL1A WILD-TYPE 84 84 82 69 45
'MOBKL1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.86

Table S1776.  Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MOBKL1A MUTATED 2 1 1 2
MOBKL1A WILD-TYPE 93 73 120 78
'MOBKL1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00488 (Fisher's exact test), Q value = 0.038

Table S1777.  Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MOBKL1A MUTATED 2 4 0 0 0 0
MOBKL1A WILD-TYPE 50 60 72 104 40 59

Figure S853.  Get High-res Image Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MOBKL1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S1778.  Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MOBKL1A MUTATED 5 1 0
MOBKL1A WILD-TYPE 212 74 99
'MOBKL1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S1779.  Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MOBKL1A MUTATED 2 0 2
MOBKL1A WILD-TYPE 119 108 70
'MOBKL1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.09

Table S1780.  Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MOBKL1A MUTATED 0 0 2 0 2
MOBKL1A WILD-TYPE 88 66 43 55 45

Figure S854.  Get High-res Image Gene #178: 'MOBKL1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SETDB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S1781.  Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SETDB2 MUTATED 3 8 1 0
SETDB2 WILD-TYPE 201 129 46 3
'SETDB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 0.2

Table S1782.  Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SETDB2 MUTATED 1 4 1 0 0
SETDB2 WILD-TYPE 38 92 43 88 80
'SETDB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00878 (Fisher's exact test), Q value = 0.053

Table S1783.  Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SETDB2 MUTATED 0 8 3 0 1
SETDB2 WILD-TYPE 26 71 70 82 57

Figure S855.  Get High-res Image Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SETDB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00925 (Fisher's exact test), Q value = 0.055

Table S1784.  Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SETDB2 MUTATED 3 6 3 0
SETDB2 WILD-TYPE 124 45 68 69

Figure S856.  Get High-res Image Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SETDB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0735 (Fisher's exact test), Q value = 0.18

Table S1785.  Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SETDB2 MUTATED 2 1 6 0 2
SETDB2 WILD-TYPE 82 84 79 69 45
'SETDB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 0.56

Table S1786.  Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SETDB2 MUTATED 2 3 2 4
SETDB2 WILD-TYPE 93 71 119 76
'SETDB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.021

Table S1787.  Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SETDB2 MUTATED 1 8 1 1 1 0
SETDB2 WILD-TYPE 51 56 71 103 39 59

Figure S857.  Get High-res Image Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0046 (Fisher's exact test), Q value = 0.037

Table S1788.  Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SETDB2 MUTATED 12 0 0
SETDB2 WILD-TYPE 205 75 99

Figure S858.  Get High-res Image Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SETDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.74

Table S1789.  Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SETDB2 MUTATED 3 1 2
SETDB2 WILD-TYPE 118 107 70
'SETDB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S1790.  Gene #179: 'SETDB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SETDB2 MUTATED 2 0 2 0 2
SETDB2 WILD-TYPE 86 66 43 55 45
'ZNF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.034

Table S1791.  Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF43 MUTATED 5 14 6 0
ZNF43 WILD-TYPE 199 123 41 3

Figure S859.  Get High-res Image Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S1792.  Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF43 MUTATED 1 9 4 2 5
ZNF43 WILD-TYPE 38 87 40 86 75
'ZNF43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.72

Table S1793.  Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF43 MUTATED 3 4 5 5 6
ZNF43 WILD-TYPE 23 75 68 77 52
'ZNF43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00998 (Fisher's exact test), Q value = 0.057

Table S1794.  Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF43 MUTATED 6 10 4 3
ZNF43 WILD-TYPE 121 41 67 66

Figure S860.  Get High-res Image Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.059

Table S1795.  Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF43 MUTATED 2 4 10 1 6
ZNF43 WILD-TYPE 82 81 75 68 41

Figure S861.  Get High-res Image Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00444 (Fisher's exact test), Q value = 0.036

Table S1796.  Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF43 MUTATED 5 1 5 12
ZNF43 WILD-TYPE 90 73 116 68

Figure S862.  Get High-res Image Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.07

Table S1797.  Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF43 MUTATED 4 9 4 2 4 1
ZNF43 WILD-TYPE 48 55 68 102 36 58

Figure S863.  Get High-res Image Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00057 (Fisher's exact test), Q value = 0.011

Table S1798.  Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF43 MUTATED 22 1 1
ZNF43 WILD-TYPE 195 74 98

Figure S864.  Get High-res Image Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00523 (Fisher's exact test), Q value = 0.04

Table S1799.  Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF43 MUTATED 3 4 10
ZNF43 WILD-TYPE 118 104 62

Figure S865.  Get High-res Image Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S1800.  Gene #180: 'ZNF43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF43 MUTATED 5 2 6 1 3
ZNF43 WILD-TYPE 83 64 39 54 44
'NOX5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 0.14

Table S1801.  Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NOX5 MUTATED 4 11 2 0
NOX5 WILD-TYPE 200 126 45 3

Figure S866.  Get High-res Image Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOX5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S1802.  Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NOX5 MUTATED 3 7 1 1 2
NOX5 WILD-TYPE 36 89 43 87 78
'NOX5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.57

Table S1803.  Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NOX5 MUTATED 1 6 2 2 4
NOX5 WILD-TYPE 25 73 71 80 54
'NOX5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S1804.  Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NOX5 MUTATED 4 6 3 2
NOX5 WILD-TYPE 123 45 68 67
'NOX5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0742 (Fisher's exact test), Q value = 0.18

Table S1805.  Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NOX5 MUTATED 0 6 5 2 3
NOX5 WILD-TYPE 84 79 80 67 44
'NOX5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.45

Table S1806.  Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NOX5 MUTATED 5 2 3 6
NOX5 WILD-TYPE 90 72 118 74
'NOX5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.17

Table S1807.  Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NOX5 MUTATED 3 6 3 1 3 1
NOX5 WILD-TYPE 49 58 69 103 37 58
'NOX5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.36

Table S1808.  Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NOX5 MUTATED 13 1 3
NOX5 WILD-TYPE 204 74 96
'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.34

Table S1809.  Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NOX5 MUTATED 8 2 3
NOX5 WILD-TYPE 113 106 69
'NOX5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0634 (Fisher's exact test), Q value = 0.17

Table S1810.  Gene #181: 'NOX5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NOX5 MUTATED 3 1 2 1 6
NOX5 WILD-TYPE 85 65 43 54 41
'ANKRD34A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0128 (Fisher's exact test), Q value = 0.065

Table S1811.  Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ANKRD34A MUTATED 1 8 2 0
ANKRD34A WILD-TYPE 203 129 45 3

Figure S867.  Get High-res Image Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANKRD34A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S1812.  Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ANKRD34A MUTATED 1 6 0 1 1
ANKRD34A WILD-TYPE 38 90 44 87 79
'ANKRD34A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.69

Table S1813.  Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ANKRD34A MUTATED 1 1 3 1 2
ANKRD34A WILD-TYPE 25 78 70 81 56
'ANKRD34A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S1814.  Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ANKRD34A MUTATED 2 4 1 1
ANKRD34A WILD-TYPE 125 47 70 68
'ANKRD34A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.37

Table S1815.  Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ANKRD34A MUTATED 2 2 6 1 0
ANKRD34A WILD-TYPE 82 83 79 68 47
'ANKRD34A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S1816.  Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ANKRD34A MUTATED 2 2 2 5
ANKRD34A WILD-TYPE 93 72 119 75
'ANKRD34A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S1817.  Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ANKRD34A MUTATED 3 2 3 2 0 1
ANKRD34A WILD-TYPE 49 62 69 102 40 58
'ANKRD34A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.6

Table S1818.  Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ANKRD34A MUTATED 8 2 1
ANKRD34A WILD-TYPE 209 73 98
'ANKRD34A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.47

Table S1819.  Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ANKRD34A MUTATED 4 1 3
ANKRD34A WILD-TYPE 117 107 69
'ANKRD34A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S1820.  Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ANKRD34A MUTATED 1 1 1 0 5
ANKRD34A WILD-TYPE 87 65 44 55 42

Figure S868.  Get High-res Image Gene #182: 'ANKRD34A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHACTR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0359 (Fisher's exact test), Q value = 0.12

Table S1821.  Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PHACTR4 MUTATED 2 8 0 0
PHACTR4 WILD-TYPE 202 129 47 3

Figure S869.  Get High-res Image Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PHACTR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S1822.  Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PHACTR4 MUTATED 0 9 0 0 0
PHACTR4 WILD-TYPE 39 87 44 88 80

Figure S870.  Get High-res Image Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHACTR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.49

Table S1823.  Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PHACTR4 MUTATED 0 2 3 0 2
PHACTR4 WILD-TYPE 26 77 70 82 56
'PHACTR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1824.  Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PHACTR4 MUTATED 0 6 1 0
PHACTR4 WILD-TYPE 127 45 70 69

Figure S871.  Get High-res Image Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHACTR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.017

Table S1825.  Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PHACTR4 MUTATED 0 1 7 0 0
PHACTR4 WILD-TYPE 84 84 78 69 47

Figure S872.  Get High-res Image Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PHACTR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0698 (Fisher's exact test), Q value = 0.18

Table S1826.  Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PHACTR4 MUTATED 1 1 1 5
PHACTR4 WILD-TYPE 94 73 120 75
'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.2

Table S1827.  Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PHACTR4 MUTATED 3 4 2 1 0 0
PHACTR4 WILD-TYPE 49 60 70 103 40 59
'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.077 (Fisher's exact test), Q value = 0.19

Table S1828.  Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PHACTR4 MUTATED 9 1 0
PHACTR4 WILD-TYPE 208 74 99
'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.17

Table S1829.  Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PHACTR4 MUTATED 3 1 5
PHACTR4 WILD-TYPE 118 107 67
'PHACTR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 0.1

Table S1830.  Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PHACTR4 MUTATED 1 1 3 0 4
PHACTR4 WILD-TYPE 87 65 42 55 43

Figure S873.  Get High-res Image Gene #183: 'PHACTR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RAD50 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.015

Table S1831.  Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RAD50 MUTATED 1 11 0 0
RAD50 WILD-TYPE 203 126 47 3

Figure S874.  Get High-res Image Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAD50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00315 (Fisher's exact test), Q value = 0.03

Table S1832.  Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RAD50 MUTATED 0 8 0 0 1
RAD50 WILD-TYPE 39 88 44 88 79

Figure S875.  Get High-res Image Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RAD50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.76

Table S1833.  Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RAD50 MUTATED 1 4 3 1 2
RAD50 WILD-TYPE 25 75 70 81 56
'RAD50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0959 (Fisher's exact test), Q value = 0.21

Table S1834.  Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RAD50 MUTATED 3 5 2 1
RAD50 WILD-TYPE 124 46 69 68
'RAD50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00732 (Fisher's exact test), Q value = 0.048

Table S1835.  Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RAD50 MUTATED 0 1 6 1 4
RAD50 WILD-TYPE 84 84 79 68 43

Figure S876.  Get High-res Image Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RAD50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0466 (Fisher's exact test), Q value = 0.14

Table S1836.  Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RAD50 MUTATED 4 1 1 6
RAD50 WILD-TYPE 91 73 120 74

Figure S877.  Get High-res Image Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RAD50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0373 (Fisher's exact test), Q value = 0.12

Table S1837.  Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RAD50 MUTATED 4 4 3 1 0 0
RAD50 WILD-TYPE 48 60 69 103 40 59

Figure S878.  Get High-res Image Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RAD50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S1838.  Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RAD50 MUTATED 10 1 1
RAD50 WILD-TYPE 207 74 98
'RAD50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.55

Table S1839.  Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RAD50 MUTATED 3 1 3
RAD50 WILD-TYPE 118 107 69
'RAD50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.029 (Fisher's exact test), Q value = 0.11

Table S1840.  Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RAD50 MUTATED 2 0 1 0 4
RAD50 WILD-TYPE 86 66 44 55 43

Figure S879.  Get High-res Image Gene #184: 'RAD50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'JAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00359 (Fisher's exact test), Q value = 0.032

Table S1841.  Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
JAK1 MUTATED 2 12 2 0
JAK1 WILD-TYPE 202 125 45 3

Figure S880.  Get High-res Image Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'JAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00602 (Fisher's exact test), Q value = 0.043

Table S1842.  Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
JAK1 MUTATED 2 9 1 1 0
JAK1 WILD-TYPE 37 87 43 87 80

Figure S881.  Get High-res Image Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S1843.  Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
JAK1 MUTATED 1 5 3 1 4
JAK1 WILD-TYPE 25 74 70 81 54
'JAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0584 (Fisher's exact test), Q value = 0.16

Table S1844.  Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
JAK1 MUTATED 4 6 3 1
JAK1 WILD-TYPE 123 45 68 68
'JAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00057 (Fisher's exact test), Q value = 0.011

Table S1845.  Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
JAK1 MUTATED 1 1 11 3 0
JAK1 WILD-TYPE 83 84 74 66 47

Figure S882.  Get High-res Image Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'JAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00379 (Fisher's exact test), Q value = 0.033

Table S1846.  Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
JAK1 MUTATED 6 3 0 7
JAK1 WILD-TYPE 89 71 121 73

Figure S883.  Get High-res Image Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'JAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S1847.  Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
JAK1 MUTATED 5 4 4 3 0 1
JAK1 WILD-TYPE 47 60 68 101 40 58
'JAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S1848.  Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
JAK1 MUTATED 14 1 2
JAK1 WILD-TYPE 203 74 97
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S1849.  Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
JAK1 MUTATED 7 1 3
JAK1 WILD-TYPE 114 107 69
'JAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0315 (Fisher's exact test), Q value = 0.11

Table S1850.  Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
JAK1 MUTATED 2 1 1 1 6
JAK1 WILD-TYPE 86 65 44 54 41

Figure S884.  Get High-res Image Gene #185: 'JAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM155B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S1851.  Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM155B MUTATED 4 7 2 0
FAM155B WILD-TYPE 200 130 45 3
'FAM155B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00217 (Fisher's exact test), Q value = 0.024

Table S1852.  Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM155B MUTATED 2 9 0 1 0
FAM155B WILD-TYPE 37 87 44 87 80

Figure S885.  Get High-res Image Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM155B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.71

Table S1853.  Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM155B MUTATED 0 3 2 1 3
FAM155B WILD-TYPE 26 76 71 81 55
'FAM155B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.26

Table S1854.  Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM155B MUTATED 2 4 2 1
FAM155B WILD-TYPE 125 47 69 68
'FAM155B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S1855.  Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM155B MUTATED 2 1 7 2 1
FAM155B WILD-TYPE 82 84 78 67 46
'FAM155B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0766 (Fisher's exact test), Q value = 0.18

Table S1856.  Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM155B MUTATED 2 1 3 7
FAM155B WILD-TYPE 93 73 118 73
'FAM155B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S1857.  Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM155B MUTATED 2 1 6 3 0 1
FAM155B WILD-TYPE 50 63 66 101 40 58
'FAM155B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0907 (Fisher's exact test), Q value = 0.2

Table S1858.  Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM155B MUTATED 11 0 2
FAM155B WILD-TYPE 206 75 97
'FAM155B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 0.084

Table S1859.  Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM155B MUTATED 9 1 1
FAM155B WILD-TYPE 112 107 71

Figure S886.  Get High-res Image Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FAM155B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00363 (Fisher's exact test), Q value = 0.033

Table S1860.  Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM155B MUTATED 7 0 0 0 4
FAM155B WILD-TYPE 81 66 45 55 43

Figure S887.  Get High-res Image Gene #186: 'FAM155B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DIDO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 0.047

Table S1861.  Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DIDO1 MUTATED 10 21 6 0
DIDO1 WILD-TYPE 194 116 41 3

Figure S888.  Get High-res Image Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DIDO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00324 (Fisher's exact test), Q value = 0.031

Table S1862.  Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DIDO1 MUTATED 4 18 3 5 2
DIDO1 WILD-TYPE 35 78 41 83 78

Figure S889.  Get High-res Image Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DIDO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.56

Table S1863.  Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DIDO1 MUTATED 2 7 8 4 8
DIDO1 WILD-TYPE 24 72 65 78 50
'DIDO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1864.  Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DIDO1 MUTATED 7 15 4 3
DIDO1 WILD-TYPE 120 36 67 66

Figure S890.  Get High-res Image Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DIDO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0612 (Fisher's exact test), Q value = 0.16

Table S1865.  Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DIDO1 MUTATED 6 5 15 4 6
DIDO1 WILD-TYPE 78 80 70 65 41
'DIDO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00077 (Fisher's exact test), Q value = 0.013

Table S1866.  Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DIDO1 MUTATED 7 3 8 18
DIDO1 WILD-TYPE 88 71 113 62

Figure S891.  Get High-res Image Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00155 (Fisher's exact test), Q value = 0.02

Table S1867.  Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DIDO1 MUTATED 9 10 11 2 2 4
DIDO1 WILD-TYPE 43 54 61 102 38 55

Figure S892.  Get High-res Image Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00272 (Fisher's exact test), Q value = 0.028

Table S1868.  Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DIDO1 MUTATED 31 3 4
DIDO1 WILD-TYPE 186 72 95

Figure S893.  Get High-res Image Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00433 (Fisher's exact test), Q value = 0.035

Table S1869.  Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DIDO1 MUTATED 18 3 6
DIDO1 WILD-TYPE 103 105 66

Figure S894.  Get High-res Image Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DIDO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0011 (Fisher's exact test), Q value = 0.017

Table S1870.  Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DIDO1 MUTATED 10 1 3 2 11
DIDO1 WILD-TYPE 78 65 42 53 36

Figure S895.  Get High-res Image Gene #187: 'DIDO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CASP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.012

Table S1871.  Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CASP8 MUTATED 2 14 2 0
CASP8 WILD-TYPE 202 123 45 3

Figure S896.  Get High-res Image Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CASP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.088

Table S1872.  Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CASP8 MUTATED 1 7 3 1 0
CASP8 WILD-TYPE 38 89 41 87 80

Figure S897.  Get High-res Image Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CASP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.58

Table S1873.  Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CASP8 MUTATED 0 3 5 3 5
CASP8 WILD-TYPE 26 76 68 79 53
'CASP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S1874.  Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CASP8 MUTATED 4 6 2 4
CASP8 WILD-TYPE 123 45 69 65
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.16

Table S1875.  Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CASP8 MUTATED 0 3 6 5 3
CASP8 WILD-TYPE 84 82 79 64 44
'CASP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0538 (Fisher's exact test), Q value = 0.15

Table S1876.  Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CASP8 MUTATED 7 4 1 5
CASP8 WILD-TYPE 88 70 120 75
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S1877.  Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CASP8 MUTATED 3 6 4 3 2 0
CASP8 WILD-TYPE 49 58 68 101 38 59
'CASP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 0.57

Table S1878.  Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CASP8 MUTATED 13 2 3
CASP8 WILD-TYPE 204 73 96
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S1879.  Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CASP8 MUTATED 3 3 4
CASP8 WILD-TYPE 118 105 68
'CASP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.65 (Fisher's exact test), Q value = 0.73

Table S1880.  Gene #188: 'CASP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CASP8 MUTATED 3 1 2 1 3
CASP8 WILD-TYPE 85 65 43 54 44
'NWD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.6

Table S1881.  Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NWD1 MUTATED 13 15 3 0
NWD1 WILD-TYPE 191 122 44 3
'NWD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00728 (Fisher's exact test), Q value = 0.047

Table S1882.  Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NWD1 MUTATED 3 15 6 2 4
NWD1 WILD-TYPE 36 81 38 86 76

Figure S898.  Get High-res Image Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NWD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.74

Table S1883.  Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NWD1 MUTATED 1 7 7 7 2
NWD1 WILD-TYPE 25 72 66 75 56
'NWD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.41

Table S1884.  Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NWD1 MUTATED 7 7 6 4
NWD1 WILD-TYPE 120 44 65 65
'NWD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.1

Table S1885.  Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NWD1 MUTATED 4 6 15 3 3
NWD1 WILD-TYPE 80 79 70 66 44

Figure S899.  Get High-res Image Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NWD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S1886.  Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NWD1 MUTATED 6 5 8 12
NWD1 WILD-TYPE 89 69 113 68
'NWD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S1887.  Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NWD1 MUTATED 7 7 7 8 1 2
NWD1 WILD-TYPE 45 57 65 96 39 57
'NWD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S1888.  Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NWD1 MUTATED 22 5 5
NWD1 WILD-TYPE 195 70 94
'NWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.8

Table S1889.  Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NWD1 MUTATED 9 11 6
NWD1 WILD-TYPE 112 97 66
'NWD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S1890.  Gene #189: 'NWD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NWD1 MUTATED 7 4 4 5 6
NWD1 WILD-TYPE 81 62 41 50 41
'RBM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1891.  Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RBM6 MUTATED 2 19 2 0
RBM6 WILD-TYPE 202 118 45 3

Figure S900.  Get High-res Image Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RBM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S1892.  Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RBM6 MUTATED 1 10 3 1 1
RBM6 WILD-TYPE 38 86 41 87 79

Figure S901.  Get High-res Image Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RBM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S1893.  Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RBM6 MUTATED 0 8 6 3 5
RBM6 WILD-TYPE 26 71 67 79 53
'RBM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00097 (Fisher's exact test), Q value = 0.015

Table S1894.  Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RBM6 MUTATED 3 10 6 3
RBM6 WILD-TYPE 124 41 65 66

Figure S902.  Get High-res Image Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00739 (Fisher's exact test), Q value = 0.048

Table S1895.  Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RBM6 MUTATED 1 5 11 1 3
RBM6 WILD-TYPE 83 80 74 68 44

Figure S903.  Get High-res Image Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RBM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00526 (Fisher's exact test), Q value = 0.04

Table S1896.  Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RBM6 MUTATED 5 6 1 9
RBM6 WILD-TYPE 90 68 120 71

Figure S904.  Get High-res Image Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.072

Table S1897.  Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RBM6 MUTATED 5 9 2 6 0 1
RBM6 WILD-TYPE 47 55 70 98 40 58

Figure S905.  Get High-res Image Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.062

Table S1898.  Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RBM6 MUTATED 19 3 1
RBM6 WILD-TYPE 198 72 98

Figure S906.  Get High-res Image Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RBM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.21

Table S1899.  Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RBM6 MUTATED 4 3 7
RBM6 WILD-TYPE 117 105 65
'RBM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.47

Table S1900.  Gene #190: 'RBM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RBM6 MUTATED 4 2 2 1 5
RBM6 WILD-TYPE 84 64 43 54 42
'PBRM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.015

Table S1901.  Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PBRM1 MUTATED 4 17 4 0
PBRM1 WILD-TYPE 200 120 43 3

Figure S907.  Get High-res Image Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PBRM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.012

Table S1902.  Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PBRM1 MUTATED 3 12 6 1 1
PBRM1 WILD-TYPE 36 84 38 87 79

Figure S908.  Get High-res Image Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PBRM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.085

Table S1903.  Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PBRM1 MUTATED 1 10 10 2 2
PBRM1 WILD-TYPE 25 69 63 80 56

Figure S909.  Get High-res Image Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PBRM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.005

Table S1904.  Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PBRM1 MUTATED 5 11 8 1
PBRM1 WILD-TYPE 122 40 63 68

Figure S910.  Get High-res Image Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PBRM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0068

Table S1905.  Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PBRM1 MUTATED 0 4 14 3 2
PBRM1 WILD-TYPE 84 81 71 66 45

Figure S911.  Get High-res Image Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PBRM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S1906.  Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PBRM1 MUTATED 7 4 4 8
PBRM1 WILD-TYPE 88 70 117 72
'PBRM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0456 (Fisher's exact test), Q value = 0.14

Table S1907.  Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PBRM1 MUTATED 6 8 6 3 2 1
PBRM1 WILD-TYPE 46 56 66 101 38 58

Figure S912.  Get High-res Image Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PBRM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0017 (Fisher's exact test), Q value = 0.021

Table S1908.  Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PBRM1 MUTATED 23 1 2
PBRM1 WILD-TYPE 194 74 97

Figure S913.  Get High-res Image Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PBRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00642 (Fisher's exact test), Q value = 0.044

Table S1909.  Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PBRM1 MUTATED 8 2 10
PBRM1 WILD-TYPE 113 106 62

Figure S914.  Get High-res Image Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PBRM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00226 (Fisher's exact test), Q value = 0.025

Table S1910.  Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PBRM1 MUTATED 6 1 6 0 7
PBRM1 WILD-TYPE 82 65 39 55 40

Figure S915.  Get High-res Image Gene #191: 'PBRM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TOP2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.47

Table S1911.  Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TOP2A MUTATED 5 6 3 0
TOP2A WILD-TYPE 199 131 44 3
'TOP2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.6

Table S1912.  Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TOP2A MUTATED 0 2 2 4 1
TOP2A WILD-TYPE 39 94 42 84 79
'TOP2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.53

Table S1913.  Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TOP2A MUTATED 2 4 1 2 3
TOP2A WILD-TYPE 24 75 72 80 55
'TOP2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.74

Table S1914.  Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TOP2A MUTATED 5 2 4 1
TOP2A WILD-TYPE 122 49 67 68
'TOP2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.58

Table S1915.  Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TOP2A MUTATED 2 1 5 3 1
TOP2A WILD-TYPE 82 84 80 66 46
'TOP2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 0.84

Table S1916.  Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TOP2A MUTATED 4 1 4 3
TOP2A WILD-TYPE 91 73 117 77
'TOP2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.12

Table S1917.  Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TOP2A MUTATED 1 7 3 1 1 1
TOP2A WILD-TYPE 51 57 69 103 39 58

Figure S916.  Get High-res Image Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TOP2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.91

Table S1918.  Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TOP2A MUTATED 9 2 3
TOP2A WILD-TYPE 208 73 96
'TOP2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.16

Table S1919.  Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TOP2A MUTATED 2 1 5
TOP2A WILD-TYPE 119 107 67
'TOP2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S1920.  Gene #192: 'TOP2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TOP2A MUTATED 1 0 3 2 2
TOP2A WILD-TYPE 87 66 42 53 45
'KIF21A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00151 (Fisher's exact test), Q value = 0.02

Table S1921.  Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIF21A MUTATED 2 13 3 0
KIF21A WILD-TYPE 202 124 44 3

Figure S917.  Get High-res Image Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIF21A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S1922.  Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIF21A MUTATED 2 9 4 0 0
KIF21A WILD-TYPE 37 87 40 88 80

Figure S918.  Get High-res Image Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIF21A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.074

Table S1923.  Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIF21A MUTATED 0 3 5 0 6
KIF21A WILD-TYPE 26 76 68 82 52

Figure S919.  Get High-res Image Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIF21A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00222 (Fisher's exact test), Q value = 0.024

Table S1924.  Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIF21A MUTATED 3 8 2 1
KIF21A WILD-TYPE 124 43 69 68

Figure S920.  Get High-res Image Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIF21A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0414 (Fisher's exact test), Q value = 0.13

Table S1925.  Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIF21A MUTATED 0 7 6 2 2
KIF21A WILD-TYPE 84 78 79 67 45

Figure S921.  Get High-res Image Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIF21A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0375 (Fisher's exact test), Q value = 0.12

Table S1926.  Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIF21A MUTATED 7 3 1 6
KIF21A WILD-TYPE 88 71 120 74

Figure S922.  Get High-res Image Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIF21A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S1927.  Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIF21A MUTATED 3 6 3 3 3 0
KIF21A WILD-TYPE 49 58 69 101 37 59
'KIF21A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.044 (Fisher's exact test), Q value = 0.13

Table S1928.  Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIF21A MUTATED 15 2 1
KIF21A WILD-TYPE 202 73 98

Figure S923.  Get High-res Image Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIF21A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S1929.  Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIF21A MUTATED 7 4 4
KIF21A WILD-TYPE 114 104 68
'KIF21A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0513 (Fisher's exact test), Q value = 0.15

Table S1930.  Gene #193: 'KIF21A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIF21A MUTATED 7 2 1 0 5
KIF21A WILD-TYPE 81 64 44 55 42
'LTBP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S1931.  Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LTBP3 MUTATED 0 15 2 0
LTBP3 WILD-TYPE 204 122 45 3

Figure S924.  Get High-res Image Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LTBP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.072

Table S1932.  Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LTBP3 MUTATED 1 9 2 0 2
LTBP3 WILD-TYPE 38 87 42 88 78

Figure S925.  Get High-res Image Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LTBP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.42

Table S1933.  Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LTBP3 MUTATED 1 3 6 1 3
LTBP3 WILD-TYPE 25 76 67 81 55
'LTBP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.67

Table S1934.  Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LTBP3 MUTATED 4 4 3 3
LTBP3 WILD-TYPE 123 47 68 66
'LTBP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0523 (Fisher's exact test), Q value = 0.15

Table S1935.  Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LTBP3 MUTATED 0 5 7 4 1
LTBP3 WILD-TYPE 84 80 78 65 46
'LTBP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0257 (Fisher's exact test), Q value = 0.098

Table S1936.  Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LTBP3 MUTATED 4 5 1 7
LTBP3 WILD-TYPE 91 69 120 73

Figure S926.  Get High-res Image Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LTBP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0093 (Fisher's exact test), Q value = 0.055

Table S1937.  Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LTBP3 MUTATED 3 7 3 1 3 0
LTBP3 WILD-TYPE 49 57 69 103 37 59

Figure S927.  Get High-res Image Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LTBP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.53

Table S1938.  Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LTBP3 MUTATED 12 3 2
LTBP3 WILD-TYPE 205 72 97
'LTBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S1939.  Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LTBP3 MUTATED 6 1 4
LTBP3 WILD-TYPE 115 107 68
'LTBP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S1940.  Gene #194: 'LTBP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LTBP3 MUTATED 5 1 2 0 3
LTBP3 WILD-TYPE 83 65 43 55 44
'ZC3H4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00867 (Fisher's exact test), Q value = 0.052

Table S1941.  Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZC3H4 MUTATED 4 14 2 0
ZC3H4 WILD-TYPE 200 123 45 3

Figure S928.  Get High-res Image Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00241 (Fisher's exact test), Q value = 0.026

Table S1942.  Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZC3H4 MUTATED 2 10 3 1 0
ZC3H4 WILD-TYPE 37 86 41 87 80

Figure S929.  Get High-res Image Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 0.8

Table S1943.  Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZC3H4 MUTATED 2 4 4 3 5
ZC3H4 WILD-TYPE 24 75 69 79 53
'ZC3H4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S1944.  Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZC3H4 MUTATED 5 6 4 3
ZC3H4 WILD-TYPE 122 45 67 66
'ZC3H4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S1945.  Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZC3H4 MUTATED 2 3 7 2 5
ZC3H4 WILD-TYPE 82 82 78 67 42
'ZC3H4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.14

Table S1946.  Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZC3H4 MUTATED 5 2 3 9
ZC3H4 WILD-TYPE 90 72 118 71

Figure S930.  Get High-res Image Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.29

Table S1947.  Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZC3H4 MUTATED 6 5 4 3 1 1
ZC3H4 WILD-TYPE 46 59 68 101 39 58
'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.32

Table S1948.  Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZC3H4 MUTATED 15 3 2
ZC3H4 WILD-TYPE 202 72 97
'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00706 (Fisher's exact test), Q value = 0.046

Table S1949.  Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZC3H4 MUTATED 6 1 8
ZC3H4 WILD-TYPE 115 107 64

Figure S931.  Get High-res Image Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZC3H4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.065

Table S1950.  Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZC3H4 MUTATED 4 1 4 0 6
ZC3H4 WILD-TYPE 84 65 41 55 41

Figure S932.  Get High-res Image Gene #195: 'ZC3H4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TATDN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S1951.  Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TATDN1 MUTATED 0 6 0 0
TATDN1 WILD-TYPE 204 131 47 3

Figure S933.  Get High-res Image Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TATDN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.37

Table S1952.  Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TATDN1 MUTATED 0 4 1 0 1
TATDN1 WILD-TYPE 39 92 43 88 79
'TATDN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.39

Table S1953.  Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TATDN1 MUTATED 1 0 2 1 0
TATDN1 WILD-TYPE 25 79 71 81 58
'TATDN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 0.83

Table S1954.  Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TATDN1 MUTATED 2 1 0 1
TATDN1 WILD-TYPE 125 50 71 68
'TATDN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S1955.  Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TATDN1 MUTATED 0 1 4 1 0
TATDN1 WILD-TYPE 84 84 81 68 47
'TATDN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.73

Table S1956.  Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TATDN1 MUTATED 1 2 1 2
TATDN1 WILD-TYPE 94 72 120 78
'TATDN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.79

Table S1957.  Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TATDN1 MUTATED 1 2 1 1 1 0
TATDN1 WILD-TYPE 51 62 71 103 39 59
'TATDN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S1958.  Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TATDN1 MUTATED 4 2 0
TATDN1 WILD-TYPE 213 73 99
'TATDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.66

Table S1959.  Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TATDN1 MUTATED 1 1 2
TATDN1 WILD-TYPE 120 107 70
'TATDN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.8 (Fisher's exact test), Q value = 0.86

Table S1960.  Gene #196: 'TATDN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TATDN1 MUTATED 2 1 1 0 0
TATDN1 WILD-TYPE 86 65 44 55 47
'PPIP5K2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.17

Table S1961.  Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PPIP5K2 MUTATED 3 9 2 0
PPIP5K2 WILD-TYPE 201 128 45 3
'PPIP5K2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.74

Table S1962.  Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PPIP5K2 MUTATED 0 2 2 1 2
PPIP5K2 WILD-TYPE 39 94 42 87 78
'PPIP5K2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.875 (Fisher's exact test), Q value = 0.92

Table S1963.  Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PPIP5K2 MUTATED 1 4 4 2 3
PPIP5K2 WILD-TYPE 25 75 69 80 55
'PPIP5K2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S1964.  Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PPIP5K2 MUTATED 6 6 0 2
PPIP5K2 WILD-TYPE 121 45 71 67

Figure S934.  Get High-res Image Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPIP5K2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.48

Table S1965.  Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PPIP5K2 MUTATED 2 4 4 0 2
PPIP5K2 WILD-TYPE 82 81 81 69 45
'PPIP5K2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 0.55

Table S1966.  Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PPIP5K2 MUTATED 1 3 4 4
PPIP5K2 WILD-TYPE 94 71 117 76
'PPIP5K2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.019

Table S1967.  Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PPIP5K2 MUTATED 2 8 1 0 1 2
PPIP5K2 WILD-TYPE 50 56 71 104 39 57

Figure S935.  Get High-res Image Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPIP5K2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.15

Table S1968.  Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PPIP5K2 MUTATED 12 0 2
PPIP5K2 WILD-TYPE 205 75 97
'PPIP5K2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S1969.  Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PPIP5K2 MUTATED 2 1 4
PPIP5K2 WILD-TYPE 119 107 68
'PPIP5K2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.68

Table S1970.  Gene #197: 'PPIP5K2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PPIP5K2 MUTATED 1 1 2 1 2
PPIP5K2 WILD-TYPE 87 65 43 54 45
'C5ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.007

Table S1971.  Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C5ORF42 MUTATED 6 20 3 1
C5ORF42 WILD-TYPE 198 117 44 2

Figure S936.  Get High-res Image Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C5ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S1972.  Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C5ORF42 MUTATED 2 20 2 2 1
C5ORF42 WILD-TYPE 37 76 42 86 79

Figure S937.  Get High-res Image Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.087

Table S1973.  Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C5ORF42 MUTATED 0 12 5 2 4
C5ORF42 WILD-TYPE 26 67 68 80 54

Figure S938.  Get High-res Image Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C5ORF42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1974.  Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C5ORF42 MUTATED 1 14 6 2
C5ORF42 WILD-TYPE 126 37 65 67

Figure S939.  Get High-res Image Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S1975.  Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C5ORF42 MUTATED 2 2 19 2 5
C5ORF42 WILD-TYPE 82 83 66 67 42

Figure S940.  Get High-res Image Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00187 (Fisher's exact test), Q value = 0.022

Table S1976.  Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C5ORF42 MUTATED 7 2 6 15
C5ORF42 WILD-TYPE 88 72 115 65

Figure S941.  Get High-res Image Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00706 (Fisher's exact test), Q value = 0.046

Table S1977.  Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C5ORF42 MUTATED 9 7 8 3 3 1
C5ORF42 WILD-TYPE 43 57 64 101 37 58

Figure S942.  Get High-res Image Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.012

Table S1978.  Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C5ORF42 MUTATED 27 1 3
C5ORF42 WILD-TYPE 190 74 96

Figure S943.  Get High-res Image Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.68

Table S1979.  Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C5ORF42 MUTATED 11 6 5
C5ORF42 WILD-TYPE 110 102 67
'C5ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0045 (Fisher's exact test), Q value = 0.036

Table S1980.  Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C5ORF42 MUTATED 10 1 2 1 8
C5ORF42 WILD-TYPE 78 65 43 54 39

Figure S944.  Get High-res Image Gene #198: 'C5ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C13ORF33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S1981.  Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C13ORF33 MUTATED 1 5 1 0
C13ORF33 WILD-TYPE 203 132 46 3
'C13ORF33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.063

Table S1982.  Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C13ORF33 MUTATED 0 6 1 0 0
C13ORF33 WILD-TYPE 39 90 43 88 80

Figure S945.  Get High-res Image Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C13ORF33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.57

Table S1983.  Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C13ORF33 MUTATED 0 3 2 0 1
C13ORF33 WILD-TYPE 26 76 71 82 57
'C13ORF33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00192 (Fisher's exact test), Q value = 0.023

Table S1984.  Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C13ORF33 MUTATED 0 4 2 0
C13ORF33 WILD-TYPE 127 47 69 69

Figure S946.  Get High-res Image Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C13ORF33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.11

Table S1985.  Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C13ORF33 MUTATED 0 1 5 0 1
C13ORF33 WILD-TYPE 84 84 80 69 46

Figure S947.  Get High-res Image Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C13ORF33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00051 (Fisher's exact test), Q value = 0.011

Table S1986.  Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C13ORF33 MUTATED 0 1 0 6
C13ORF33 WILD-TYPE 95 73 121 74

Figure S948.  Get High-res Image Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.88

Table S1987.  Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C13ORF33 MUTATED 1 1 2 3 0 0
C13ORF33 WILD-TYPE 51 63 70 101 40 59
'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S1988.  Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C13ORF33 MUTATED 6 1 0
C13ORF33 WILD-TYPE 211 74 99
'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S1989.  Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C13ORF33 MUTATED 4 2 0
C13ORF33 WILD-TYPE 117 106 72
'C13ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.54

Table S1990.  Gene #199: 'C13ORF33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C13ORF33 MUTATED 3 1 0 0 2
C13ORF33 WILD-TYPE 85 65 45 55 45
'COIL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.094

Table S1991.  Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
COIL MUTATED 1 7 2 0
COIL WILD-TYPE 203 130 45 3

Figure S949.  Get High-res Image Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'COIL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.067

Table S1992.  Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
COIL MUTATED 2 4 3 0 0
COIL WILD-TYPE 37 92 41 88 80

Figure S950.  Get High-res Image Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COIL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.46

Table S1993.  Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
COIL MUTATED 0 3 3 0 2
COIL WILD-TYPE 26 76 70 82 56
'COIL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S1994.  Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
COIL MUTATED 0 6 0 2
COIL WILD-TYPE 127 45 71 67

Figure S951.  Get High-res Image Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'COIL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.17

Table S1995.  Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
COIL MUTATED 0 2 6 1 1
COIL WILD-TYPE 84 83 79 68 46
'COIL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.09

Table S1996.  Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
COIL MUTATED 2 3 0 5
COIL WILD-TYPE 93 71 121 75

Figure S952.  Get High-res Image Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'COIL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.016

Table S1997.  Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
COIL MUTATED 4 4 0 0 2 0
COIL WILD-TYPE 48 60 72 104 38 59

Figure S953.  Get High-res Image Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'COIL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0905 (Fisher's exact test), Q value = 0.2

Table S1998.  Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
COIL MUTATED 9 0 1
COIL WILD-TYPE 208 75 98
'COIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.14

Table S1999.  Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
COIL MUTATED 6 0 2
COIL WILD-TYPE 115 108 70

Figure S954.  Get High-res Image Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'COIL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.22

Table S2000.  Gene #200: 'COIL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
COIL MUTATED 4 0 1 0 3
COIL WILD-TYPE 84 66 44 55 44
'TP53BP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.1

Table S2001.  Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TP53BP2 MUTATED 2 9 2 0
TP53BP2 WILD-TYPE 202 128 45 3

Figure S955.  Get High-res Image Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53BP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.11

Table S2002.  Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TP53BP2 MUTATED 2 7 2 1 0
TP53BP2 WILD-TYPE 37 89 42 87 80

Figure S956.  Get High-res Image Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53BP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S2003.  Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TP53BP2 MUTATED 0 3 5 2 3
TP53BP2 WILD-TYPE 26 76 68 80 55
'TP53BP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0343 (Fisher's exact test), Q value = 0.11

Table S2004.  Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TP53BP2 MUTATED 3 6 3 1
TP53BP2 WILD-TYPE 124 45 68 68

Figure S957.  Get High-res Image Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TP53BP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.093

Table S2005.  Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TP53BP2 MUTATED 1 1 8 1 2
TP53BP2 WILD-TYPE 83 84 77 68 45

Figure S958.  Get High-res Image Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53BP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0542 (Fisher's exact test), Q value = 0.15

Table S2006.  Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TP53BP2 MUTATED 3 1 2 7
TP53BP2 WILD-TYPE 92 73 119 73
'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.083

Table S2007.  Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TP53BP2 MUTATED 6 3 1 2 2 0
TP53BP2 WILD-TYPE 46 61 71 102 38 59

Figure S959.  Get High-res Image Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S2008.  Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TP53BP2 MUTATED 11 2 1
TP53BP2 WILD-TYPE 206 73 98
'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S2009.  Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TP53BP2 MUTATED 4 2 3
TP53BP2 WILD-TYPE 117 106 69
'TP53BP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.56

Table S2010.  Gene #201: 'TP53BP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TP53BP2 MUTATED 3 2 1 0 3
TP53BP2 WILD-TYPE 85 64 44 55 44
'TGFBR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S2011.  Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TGFBR2 MUTATED 4 12 0 0
TGFBR2 WILD-TYPE 200 125 47 3

Figure S960.  Get High-res Image Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TGFBR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.53

Table S2012.  Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TGFBR2 MUTATED 1 5 1 1 5
TGFBR2 WILD-TYPE 38 91 43 87 75
'TGFBR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0547 (Fisher's exact test), Q value = 0.15

Table S2013.  Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TGFBR2 MUTATED 3 0 3 3 3
TGFBR2 WILD-TYPE 23 79 70 79 55
'TGFBR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S2014.  Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TGFBR2 MUTATED 8 2 0 2
TGFBR2 WILD-TYPE 119 49 71 67
'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.5

Table S2015.  Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TGFBR2 MUTATED 2 7 3 2 1
TGFBR2 WILD-TYPE 82 78 82 67 46
'TGFBR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.73

Table S2016.  Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TGFBR2 MUTATED 5 4 3 3
TGFBR2 WILD-TYPE 90 70 118 77
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 0.75

Table S2017.  Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TGFBR2 MUTATED 2 5 2 5 1 1
TGFBR2 WILD-TYPE 50 59 70 99 39 58
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S2018.  Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TGFBR2 MUTATED 9 5 2
TGFBR2 WILD-TYPE 208 70 97
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.7

Table S2019.  Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TGFBR2 MUTATED 4 6 2
TGFBR2 WILD-TYPE 117 102 70
'TGFBR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.49

Table S2020.  Gene #202: 'TGFBR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TGFBR2 MUTATED 5 4 2 0 1
TGFBR2 WILD-TYPE 83 62 43 55 46
'FBXO21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.088

Table S2021.  Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FBXO21 MUTATED 4 11 0 0
FBXO21 WILD-TYPE 200 126 47 3

Figure S961.  Get High-res Image Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXO21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.74

Table S2022.  Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FBXO21 MUTATED 0 4 0 2 2
FBXO21 WILD-TYPE 39 92 44 86 78
'FBXO21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.9

Table S2023.  Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FBXO21 MUTATED 1 5 2 3 2
FBXO21 WILD-TYPE 25 74 71 79 56
'FBXO21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0245 (Fisher's exact test), Q value = 0.095

Table S2024.  Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FBXO21 MUTATED 2 6 2 3
FBXO21 WILD-TYPE 125 45 69 66

Figure S962.  Get High-res Image Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S2025.  Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FBXO21 MUTATED 1 4 8 1 0
FBXO21 WILD-TYPE 83 81 77 68 47

Figure S963.  Get High-res Image Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBXO21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0106 (Fisher's exact test), Q value = 0.059

Table S2026.  Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FBXO21 MUTATED 4 5 0 5
FBXO21 WILD-TYPE 91 69 121 75

Figure S964.  Get High-res Image Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.19

Table S2027.  Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FBXO21 MUTATED 0 6 1 6 1 1
FBXO21 WILD-TYPE 52 58 71 98 39 58
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 0.87

Table S2028.  Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FBXO21 MUTATED 10 2 3
FBXO21 WILD-TYPE 207 73 96
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.8

Table S2029.  Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FBXO21 MUTATED 3 4 1
FBXO21 WILD-TYPE 118 104 71
'FBXO21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S2030.  Gene #203: 'FBXO21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FBXO21 MUTATED 2 2 1 1 2
FBXO21 WILD-TYPE 86 64 44 54 45
'CASP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S2031.  Gene #204: 'CASP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CASP7 MUTATED 1 3 0 0
CASP7 WILD-TYPE 203 134 47 3
'CASP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S2032.  Gene #204: 'CASP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CASP7 MUTATED 0 3 1 0 0
CASP7 WILD-TYPE 39 93 43 88 80
'CASP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.53

Table S2033.  Gene #204: 'CASP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CASP7 MUTATED 1 1 1 0 1
CASP7 WILD-TYPE 25 78 72 82 57
'CASP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.38

Table S2034.  Gene #204: 'CASP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CASP7 MUTATED 1 2 0 1
CASP7 WILD-TYPE 126 49 71 68
'CASP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S2035.  Gene #204: 'CASP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CASP7 MUTATED 0 1 2 1 0
CASP7 WILD-TYPE 84 84 83 68 47
'CASP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S2036.  Gene #204: 'CASP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CASP7 MUTATED 1 1 0 2
CASP7 WILD-TYPE 94 73 121 78
'CASP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S2037.  Gene #204: 'CASP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CASP7 MUTATED 1 2 1 0 0 0
CASP7 WILD-TYPE 51 62 71 104 40 59
'CASP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S2038.  Gene #204: 'CASP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CASP7 MUTATED 4 0 0
CASP7 WILD-TYPE 213 75 99
'CASP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S2039.  Gene #204: 'CASP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CASP7 MUTATED 2 0 2
CASP7 WILD-TYPE 119 108 70
'CASP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.37

Table S2040.  Gene #204: 'CASP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CASP7 MUTATED 1 0 1 0 2
CASP7 WILD-TYPE 87 66 44 55 45
'TMEM41B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.11

Table S2041.  Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMEM41B MUTATED 0 5 0 0
TMEM41B WILD-TYPE 204 132 47 3

Figure S965.  Get High-res Image Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM41B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S2042.  Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TMEM41B MUTATED 0 3 0 0 0
TMEM41B WILD-TYPE 39 93 44 88 80
'TMEM41B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.77

Table S2043.  Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMEM41B MUTATED 0 2 1 0 1
TMEM41B WILD-TYPE 26 77 72 82 57
'TMEM41B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.062

Table S2044.  Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMEM41B MUTATED 0 3 1 0
TMEM41B WILD-TYPE 127 48 70 69

Figure S966.  Get High-res Image Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TMEM41B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S2045.  Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMEM41B MUTATED 0 1 1 0 2
TMEM41B WILD-TYPE 84 84 84 69 45
'TMEM41B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.41

Table S2046.  Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMEM41B MUTATED 1 1 0 2
TMEM41B WILD-TYPE 94 73 121 78
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S2047.  Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMEM41B MUTATED 2 2 0 0 1 0
TMEM41B WILD-TYPE 50 62 72 104 39 59
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.88

Table S2048.  Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMEM41B MUTATED 4 0 1
TMEM41B WILD-TYPE 213 75 98
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2049.  Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TMEM41B MUTATED 1 1 1
TMEM41B WILD-TYPE 120 107 71
'TMEM41B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S2050.  Gene #205: 'TMEM41B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TMEM41B MUTATED 1 0 0 0 2
TMEM41B WILD-TYPE 87 66 45 55 45
'ORC3L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.13

Table S2051.  Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ORC3L MUTATED 3 9 0 0
ORC3L WILD-TYPE 201 128 47 3

Figure S967.  Get High-res Image Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ORC3L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.1

Table S2052.  Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ORC3L MUTATED 0 6 0 0 1
ORC3L WILD-TYPE 39 90 44 88 79

Figure S968.  Get High-res Image Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ORC3L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S2053.  Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ORC3L MUTATED 0 4 2 1 3
ORC3L WILD-TYPE 26 75 71 81 55
'ORC3L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S2054.  Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ORC3L MUTATED 0 7 1 2
ORC3L WILD-TYPE 127 44 70 67

Figure S969.  Get High-res Image Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ORC3L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.21

Table S2055.  Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ORC3L MUTATED 0 1 5 3 1
ORC3L WILD-TYPE 84 84 80 66 46
'ORC3L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.085

Table S2056.  Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ORC3L MUTATED 5 1 0 4
ORC3L WILD-TYPE 90 73 121 76

Figure S970.  Get High-res Image Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ORC3L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.29

Table S2057.  Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ORC3L MUTATED 1 5 1 3 2 0
ORC3L WILD-TYPE 51 59 71 101 38 59
'ORC3L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0268 (Fisher's exact test), Q value = 0.1

Table S2058.  Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ORC3L MUTATED 11 1 0
ORC3L WILD-TYPE 206 74 99

Figure S971.  Get High-res Image Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ORC3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S2059.  Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ORC3L MUTATED 2 2 2
ORC3L WILD-TYPE 119 106 70
'ORC3L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S2060.  Gene #206: 'ORC3L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ORC3L MUTATED 3 0 1 0 2
ORC3L WILD-TYPE 85 66 44 55 45
'CBWD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.065

Table S2061.  Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CBWD6 MUTATED 0 6 1 0
CBWD6 WILD-TYPE 204 131 46 3

Figure S972.  Get High-res Image Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CBWD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.096

Table S2062.  Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CBWD6 MUTATED 1 5 0 0 0
CBWD6 WILD-TYPE 38 91 44 88 80

Figure S973.  Get High-res Image Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CBWD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S2063.  Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CBWD6 MUTATED 0 1 1 0 3
CBWD6 WILD-TYPE 26 78 72 82 55
'CBWD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0044

Table S2064.  Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CBWD6 MUTATED 0 5 0 0
CBWD6 WILD-TYPE 127 46 71 69

Figure S974.  Get High-res Image Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CBWD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.19

Table S2065.  Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CBWD6 MUTATED 0 0 3 3 1
CBWD6 WILD-TYPE 84 85 82 66 46
'CBWD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.076

Table S2066.  Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CBWD6 MUTATED 3 0 0 4
CBWD6 WILD-TYPE 92 74 121 76

Figure S975.  Get High-res Image Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CBWD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.021

Table S2067.  Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CBWD6 MUTATED 5 1 1 0 0 0
CBWD6 WILD-TYPE 47 63 71 104 40 59

Figure S976.  Get High-res Image Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CBWD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S2068.  Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CBWD6 MUTATED 6 0 1
CBWD6 WILD-TYPE 211 75 98
'CBWD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S2069.  Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CBWD6 MUTATED 4 0 1
CBWD6 WILD-TYPE 117 108 71
'CBWD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00644 (Fisher's exact test), Q value = 0.044

Table S2070.  Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CBWD6 MUTATED 1 0 0 0 4
CBWD6 WILD-TYPE 87 66 45 55 43

Figure S977.  Get High-res Image Gene #207: 'CBWD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRKAB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S2071.  Gene #208: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRKAB1 MUTATED 4 6 0 0
PRKAB1 WILD-TYPE 200 131 47 3
'PRKAB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.78

Table S2072.  Gene #208: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PRKAB1 MUTATED 0 4 1 3 1
PRKAB1 WILD-TYPE 39 92 43 85 79
'PRKAB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 0.92

Table S2073.  Gene #208: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRKAB1 MUTATED 0 3 3 2 1
PRKAB1 WILD-TYPE 26 76 70 80 57
'PRKAB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.628 (Fisher's exact test), Q value = 0.71

Table S2074.  Gene #208: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRKAB1 MUTATED 2 2 3 2
PRKAB1 WILD-TYPE 125 49 68 67
'PRKAB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 0.83

Table S2075.  Gene #208: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRKAB1 MUTATED 3 2 3 1 0
PRKAB1 WILD-TYPE 81 83 82 68 47
'PRKAB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 0.83

Table S2076.  Gene #208: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRKAB1 MUTATED 1 2 4 2
PRKAB1 WILD-TYPE 94 72 117 78
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.65

Table S2077.  Gene #208: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRKAB1 MUTATED 1 2 0 3 2 2
PRKAB1 WILD-TYPE 51 62 72 101 38 57
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 0.88

Table S2078.  Gene #208: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRKAB1 MUTATED 6 1 3
PRKAB1 WILD-TYPE 211 74 96
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S2079.  Gene #208: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PRKAB1 MUTATED 5 3 1
PRKAB1 WILD-TYPE 116 105 71
'PRKAB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.87

Table S2080.  Gene #208: 'PRKAB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PRKAB1 MUTATED 3 1 1 3 1
PRKAB1 WILD-TYPE 85 65 44 52 46
'RABGAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S2081.  Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RABGAP1 MUTATED 2 17 2 0
RABGAP1 WILD-TYPE 202 120 45 3

Figure S978.  Get High-res Image Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RABGAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S2082.  Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RABGAP1 MUTATED 2 14 3 0 0
RABGAP1 WILD-TYPE 37 82 41 88 80

Figure S979.  Get High-res Image Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RABGAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00779 (Fisher's exact test), Q value = 0.049

Table S2083.  Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RABGAP1 MUTATED 0 9 5 0 4
RABGAP1 WILD-TYPE 26 70 68 82 54

Figure S980.  Get High-res Image Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RABGAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S2084.  Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RABGAP1 MUTATED 4 10 4 0
RABGAP1 WILD-TYPE 123 41 67 69

Figure S981.  Get High-res Image Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S2085.  Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RABGAP1 MUTATED 0 2 12 0 5
RABGAP1 WILD-TYPE 84 83 73 69 42

Figure S982.  Get High-res Image Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S2086.  Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RABGAP1 MUTATED 4 1 0 14
RABGAP1 WILD-TYPE 91 73 121 66

Figure S983.  Get High-res Image Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00766 (Fisher's exact test), Q value = 0.049

Table S2087.  Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RABGAP1 MUTATED 7 6 5 4 0 0
RABGAP1 WILD-TYPE 45 58 67 100 40 59

Figure S984.  Get High-res Image Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.013

Table S2088.  Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RABGAP1 MUTATED 20 2 0
RABGAP1 WILD-TYPE 197 73 99

Figure S985.  Get High-res Image Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 0.17

Table S2089.  Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RABGAP1 MUTATED 10 2 5
RABGAP1 WILD-TYPE 111 106 67
'RABGAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00571 (Fisher's exact test), Q value = 0.042

Table S2090.  Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RABGAP1 MUTATED 5 2 2 0 8
RABGAP1 WILD-TYPE 83 64 43 55 39

Figure S986.  Get High-res Image Gene #209: 'RABGAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SRCIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S2091.  Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SRCIN1 MUTATED 4 8 2 0
SRCIN1 WILD-TYPE 200 129 45 3
'SRCIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 0.69

Table S2092.  Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SRCIN1 MUTATED 0 5 2 2 2
SRCIN1 WILD-TYPE 39 91 42 86 78
'SRCIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0833 (Fisher's exact test), Q value = 0.19

Table S2093.  Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SRCIN1 MUTATED 1 6 2 0 2
SRCIN1 WILD-TYPE 25 73 71 82 56
'SRCIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.13

Table S2094.  Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SRCIN1 MUTATED 2 5 3 1
SRCIN1 WILD-TYPE 125 46 68 68

Figure S987.  Get High-res Image Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SRCIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 0.82

Table S2095.  Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SRCIN1 MUTATED 2 2 5 2 2
SRCIN1 WILD-TYPE 82 83 80 67 45
'SRCIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S2096.  Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SRCIN1 MUTATED 3 2 2 6
SRCIN1 WILD-TYPE 92 72 119 74
'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.51

Table S2097.  Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SRCIN1 MUTATED 2 5 3 2 0 2
SRCIN1 WILD-TYPE 50 59 69 102 40 57
'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 0.92

Table S2098.  Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SRCIN1 MUTATED 9 2 3
SRCIN1 WILD-TYPE 208 73 96
'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.35

Table S2099.  Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SRCIN1 MUTATED 4 2 5
SRCIN1 WILD-TYPE 117 106 67
'SRCIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.5

Table S2100.  Gene #210: 'SRCIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SRCIN1 MUTATED 3 1 2 1 4
SRCIN1 WILD-TYPE 85 65 43 54 43
'NIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S2101.  Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NIN MUTATED 7 13 3 0
NIN WILD-TYPE 197 124 44 3
'NIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0896 (Fisher's exact test), Q value = 0.2

Table S2102.  Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NIN MUTATED 3 10 2 2 2
NIN WILD-TYPE 36 86 42 86 78
'NIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 0.14

Table S2103.  Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NIN MUTATED 0 9 5 1 3
NIN WILD-TYPE 26 70 68 81 55

Figure S988.  Get High-res Image Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 0.2

Table S2104.  Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NIN MUTATED 6 7 3 2
NIN WILD-TYPE 121 44 68 67
'NIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.2

Table S2105.  Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NIN MUTATED 3 3 11 3 2
NIN WILD-TYPE 81 82 74 66 45
'NIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0666 (Fisher's exact test), Q value = 0.17

Table S2106.  Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NIN MUTATED 8 1 5 8
NIN WILD-TYPE 87 73 116 72
'NIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00564 (Fisher's exact test), Q value = 0.041

Table S2107.  Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NIN MUTATED 7 6 6 2 2 0
NIN WILD-TYPE 45 58 66 102 38 59

Figure S989.  Get High-res Image Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00521 (Fisher's exact test), Q value = 0.04

Table S2108.  Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NIN MUTATED 20 2 1
NIN WILD-TYPE 197 73 98

Figure S990.  Get High-res Image Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S2109.  Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NIN MUTATED 11 3 3
NIN WILD-TYPE 110 105 69
'NIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00909 (Fisher's exact test), Q value = 0.054

Table S2110.  Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NIN MUTATED 7 2 1 0 7
NIN WILD-TYPE 81 64 44 55 40

Figure S991.  Get High-res Image Gene #211: 'NIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PET112L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00461 (Fisher's exact test), Q value = 0.037

Table S2111.  Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PET112L MUTATED 0 7 1 0
PET112L WILD-TYPE 204 130 46 3

Figure S992.  Get High-res Image Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PET112L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.53

Table S2112.  Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PET112L MUTATED 1 3 1 0 1
PET112L WILD-TYPE 38 93 43 88 79
'PET112L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.48

Table S2113.  Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PET112L MUTATED 1 3 2 0 1
PET112L WILD-TYPE 25 76 71 82 57
'PET112L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 0.8

Table S2114.  Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PET112L MUTATED 2 2 2 1
PET112L WILD-TYPE 125 49 69 68
'PET112L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.18

Table S2115.  Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PET112L MUTATED 1 1 5 0 0
PET112L WILD-TYPE 83 84 80 69 47
'PET112L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 0.76

Table S2116.  Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PET112L MUTATED 1 1 2 3
PET112L WILD-TYPE 94 73 119 77
'PET112L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S2117.  Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PET112L MUTATED 2 3 1 0 1 1
PET112L WILD-TYPE 50 61 71 104 39 58
'PET112L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2118.  Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PET112L MUTATED 5 1 2
PET112L WILD-TYPE 212 74 97
'PET112L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.46

Table S2119.  Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PET112L MUTATED 2 1 3
PET112L WILD-TYPE 119 107 69
'PET112L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S2120.  Gene #212: 'PET112L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PET112L MUTATED 3 0 2 0 1
PET112L WILD-TYPE 85 66 43 55 46
'ZKSCAN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.15

Table S2121.  Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZKSCAN5 MUTATED 2 8 1 0
ZKSCAN5 WILD-TYPE 202 129 46 3
'ZKSCAN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S2122.  Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZKSCAN5 MUTATED 2 3 3 0 2
ZKSCAN5 WILD-TYPE 37 93 41 88 78
'ZKSCAN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.044 (Fisher's exact test), Q value = 0.13

Table S2123.  Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZKSCAN5 MUTATED 1 5 3 0 0
ZKSCAN5 WILD-TYPE 25 74 70 82 58

Figure S993.  Get High-res Image Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 0.19

Table S2124.  Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZKSCAN5 MUTATED 3 4 2 0
ZKSCAN5 WILD-TYPE 124 47 69 69
'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.13

Table S2125.  Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZKSCAN5 MUTATED 0 1 6 3 1
ZKSCAN5 WILD-TYPE 84 84 79 66 46

Figure S994.  Get High-res Image Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S2126.  Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZKSCAN5 MUTATED 5 1 1 4
ZKSCAN5 WILD-TYPE 90 73 120 76
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S2127.  Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZKSCAN5 MUTATED 2 6 0 2 1 0
ZKSCAN5 WILD-TYPE 50 58 72 102 39 59

Figure S995.  Get High-res Image Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0606 (Fisher's exact test), Q value = 0.16

Table S2128.  Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZKSCAN5 MUTATED 10 0 1
ZKSCAN5 WILD-TYPE 207 75 98
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S2129.  Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZKSCAN5 MUTATED 4 2 4
ZKSCAN5 WILD-TYPE 117 106 68
'ZKSCAN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0555 (Fisher's exact test), Q value = 0.15

Table S2130.  Gene #213: 'ZKSCAN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZKSCAN5 MUTATED 2 0 3 1 4
ZKSCAN5 WILD-TYPE 86 66 42 54 43
'CTSC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0041

Table S2131.  Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CTSC MUTATED 0 11 0 0
CTSC WILD-TYPE 204 126 47 3

Figure S996.  Get High-res Image Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTSC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S2132.  Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CTSC MUTATED 0 6 1 0 0
CTSC WILD-TYPE 39 90 43 88 80

Figure S997.  Get High-res Image Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTSC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.68

Table S2133.  Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CTSC MUTATED 0 1 2 1 3
CTSC WILD-TYPE 26 78 71 81 55
'CTSC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0522 (Fisher's exact test), Q value = 0.15

Table S2134.  Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CTSC MUTATED 1 4 1 1
CTSC WILD-TYPE 126 47 70 68
'CTSC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S2135.  Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CTSC MUTATED 0 4 5 1 1
CTSC WILD-TYPE 84 81 80 68 46
'CTSC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00875 (Fisher's exact test), Q value = 0.053

Table S2136.  Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CTSC MUTATED 2 3 0 6
CTSC WILD-TYPE 93 71 121 74

Figure S998.  Get High-res Image Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTSC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S2137.  Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CTSC MUTATED 2 4 1 3 1 0
CTSC WILD-TYPE 50 60 71 101 39 59
'CTSC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S2138.  Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CTSC MUTATED 8 2 1
CTSC WILD-TYPE 209 73 98
'CTSC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S2139.  Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CTSC MUTATED 5 2 0
CTSC WILD-TYPE 116 106 72
'CTSC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.44

Table S2140.  Gene #214: 'CTSC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CTSC MUTATED 4 1 0 0 2
CTSC WILD-TYPE 84 65 45 55 45
'AQP8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.095

Table S2141.  Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AQP8 MUTATED 3 7 2 1
AQP8 WILD-TYPE 201 130 45 2

Figure S999.  Get High-res Image Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AQP8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.13

Table S2142.  Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AQP8 MUTATED 3 5 2 0 1
AQP8 WILD-TYPE 36 91 42 88 79

Figure S1000.  Get High-res Image Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AQP8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.52

Table S2143.  Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AQP8 MUTATED 0 5 1 2 3
AQP8 WILD-TYPE 26 74 72 80 55
'AQP8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.43

Table S2144.  Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AQP8 MUTATED 2 3 4 2
AQP8 WILD-TYPE 125 48 67 67
'AQP8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S2145.  Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AQP8 MUTATED 0 3 5 2 2
AQP8 WILD-TYPE 84 82 80 67 45
'AQP8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.012

Table S2146.  Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AQP8 MUTATED 3 1 0 8
AQP8 WILD-TYPE 92 73 121 72

Figure S1001.  Get High-res Image Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AQP8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S2147.  Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AQP8 MUTATED 8 2 0 3 0 0
AQP8 WILD-TYPE 44 62 72 101 40 59

Figure S1002.  Get High-res Image Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AQP8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S2148.  Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AQP8 MUTATED 10 2 1
AQP8 WILD-TYPE 207 73 98
'AQP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.67

Table S2149.  Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AQP8 MUTATED 5 3 1
AQP8 WILD-TYPE 116 105 71
'AQP8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S2150.  Gene #215: 'AQP8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AQP8 MUTATED 6 1 1 0 1
AQP8 WILD-TYPE 82 65 44 55 46
'KANK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.19

Table S2151.  Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KANK4 MUTATED 4 10 1 0
KANK4 WILD-TYPE 200 127 46 3
'KANK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.012

Table S2152.  Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KANK4 MUTATED 2 10 0 1 0
KANK4 WILD-TYPE 37 86 44 87 80

Figure S1003.  Get High-res Image Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KANK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 0.91

Table S2153.  Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KANK4 MUTATED 1 4 4 2 2
KANK4 WILD-TYPE 25 75 69 80 56
'KANK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S2154.  Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KANK4 MUTATED 3 5 3 2
KANK4 WILD-TYPE 124 46 68 67
'KANK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00741 (Fisher's exact test), Q value = 0.048

Table S2155.  Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KANK4 MUTATED 2 0 9 2 2
KANK4 WILD-TYPE 82 85 76 67 45

Figure S1004.  Get High-res Image Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KANK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S2156.  Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KANK4 MUTATED 4 1 3 7
KANK4 WILD-TYPE 91 73 118 73
'KANK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.6

Table S2157.  Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KANK4 MUTATED 4 3 3 2 2 1
KANK4 WILD-TYPE 48 61 69 102 38 58
'KANK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S2158.  Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KANK4 MUTATED 12 1 2
KANK4 WILD-TYPE 205 74 97
'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.65

Table S2159.  Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KANK4 MUTATED 7 3 3
KANK4 WILD-TYPE 114 105 69
'KANK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.33

Table S2160.  Gene #216: 'KANK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KANK4 MUTATED 6 0 2 2 3
KANK4 WILD-TYPE 82 66 43 53 44
'ACVR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.17

Table S2161.  Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ACVR1B MUTATED 3 6 4 0
ACVR1B WILD-TYPE 201 131 43 3
'ACVR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S2162.  Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ACVR1B MUTATED 1 6 0 2 1
ACVR1B WILD-TYPE 38 90 44 86 79
'ACVR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S2163.  Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ACVR1B MUTATED 0 4 4 1 4
ACVR1B WILD-TYPE 26 75 69 81 54
'ACVR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0336 (Fisher's exact test), Q value = 0.11

Table S2164.  Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ACVR1B MUTATED 3 6 3 1
ACVR1B WILD-TYPE 124 45 68 68

Figure S1005.  Get High-res Image Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0054

Table S2165.  Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ACVR1B MUTATED 0 1 2 1 7
ACVR1B WILD-TYPE 84 84 83 68 40

Figure S1006.  Get High-res Image Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ACVR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00354 (Fisher's exact test), Q value = 0.032

Table S2166.  Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ACVR1B MUTATED 3 0 1 7
ACVR1B WILD-TYPE 92 74 120 73

Figure S1007.  Get High-res Image Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.21

Table S2167.  Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ACVR1B MUTATED 3 5 3 2 0 0
ACVR1B WILD-TYPE 49 59 69 102 40 59
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S2168.  Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ACVR1B MUTATED 11 1 1
ACVR1B WILD-TYPE 206 74 98
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S2169.  Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ACVR1B MUTATED 4 2 4
ACVR1B WILD-TYPE 117 106 68
'ACVR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S2170.  Gene #217: 'ACVR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ACVR1B MUTATED 3 1 2 0 4
ACVR1B WILD-TYPE 85 65 43 55 43
'STAT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S2171.  Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
STAT6 MUTATED 0 6 0 0
STAT6 WILD-TYPE 204 131 47 3

Figure S1008.  Get High-res Image Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'STAT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.17

Table S2172.  Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
STAT6 MUTATED 0 4 0 0 0
STAT6 WILD-TYPE 39 92 44 88 80
'STAT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.93

Table S2173.  Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
STAT6 MUTATED 0 2 1 1 2
STAT6 WILD-TYPE 26 77 72 81 56
'STAT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.069

Table S2174.  Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
STAT6 MUTATED 1 4 0 1
STAT6 WILD-TYPE 126 47 71 68

Figure S1009.  Get High-res Image Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STAT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S2175.  Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
STAT6 MUTATED 0 1 3 0 1
STAT6 WILD-TYPE 84 84 82 69 46
'STAT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.34

Table S2176.  Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
STAT6 MUTATED 1 2 0 2
STAT6 WILD-TYPE 94 72 121 78
'STAT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S2177.  Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
STAT6 MUTATED 2 2 0 1 1 0
STAT6 WILD-TYPE 50 62 72 103 39 59
'STAT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S2178.  Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
STAT6 MUTATED 4 2 0
STAT6 WILD-TYPE 213 73 99
'STAT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2179.  Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
STAT6 MUTATED 2 1 1
STAT6 WILD-TYPE 119 107 71
'STAT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.59

Table S2180.  Gene #218: 'STAT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
STAT6 MUTATED 1 1 0 0 2
STAT6 WILD-TYPE 87 65 45 55 45
'PUS7L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 0.21

Table S2181.  Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PUS7L MUTATED 2 7 0 0
PUS7L WILD-TYPE 202 130 47 3
'PUS7L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.29

Table S2182.  Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PUS7L MUTATED 0 4 0 0 1
PUS7L WILD-TYPE 39 92 44 88 79
'PUS7L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S2183.  Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PUS7L MUTATED 2 4 1 1 0
PUS7L WILD-TYPE 24 75 72 81 58
'PUS7L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.52

Table S2184.  Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PUS7L MUTATED 2 3 2 1
PUS7L WILD-TYPE 125 48 69 68
'PUS7L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S2185.  Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PUS7L MUTATED 1 1 4 0 1
PUS7L WILD-TYPE 83 84 81 69 46
'PUS7L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 0.89

Table S2186.  Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PUS7L MUTATED 3 1 2 1
PUS7L WILD-TYPE 92 73 119 79
'PUS7L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00295 (Fisher's exact test), Q value = 0.029

Table S2187.  Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PUS7L MUTATED 0 6 2 0 0 1
PUS7L WILD-TYPE 52 58 70 104 40 58

Figure S1010.  Get High-res Image Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PUS7L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S2188.  Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PUS7L MUTATED 8 0 1
PUS7L WILD-TYPE 209 75 98
'PUS7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.013

Table S2189.  Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PUS7L MUTATED 0 0 5
PUS7L WILD-TYPE 121 108 67

Figure S1011.  Get High-res Image Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PUS7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00504 (Fisher's exact test), Q value = 0.039

Table S2190.  Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PUS7L MUTATED 0 0 3 0 2
PUS7L WILD-TYPE 88 66 42 55 45

Figure S1012.  Get High-res Image Gene #219: 'PUS7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.013

Table S2191.  Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARID2 MUTATED 6 20 2 0
ARID2 WILD-TYPE 198 117 45 3

Figure S1013.  Get High-res Image Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 0.098

Table S2192.  Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARID2 MUTATED 2 13 4 2 3
ARID2 WILD-TYPE 37 83 40 86 77

Figure S1014.  Get High-res Image Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S2193.  Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARID2 MUTATED 1 8 7 3 6
ARID2 WILD-TYPE 25 71 66 79 52
'ARID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00155 (Fisher's exact test), Q value = 0.02

Table S2194.  Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARID2 MUTATED 4 11 5 5
ARID2 WILD-TYPE 123 40 66 64

Figure S1015.  Get High-res Image Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00785 (Fisher's exact test), Q value = 0.049

Table S2195.  Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARID2 MUTATED 1 5 13 6 2
ARID2 WILD-TYPE 83 80 72 63 45

Figure S1016.  Get High-res Image Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.48

Table S2196.  Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARID2 MUTATED 10 3 7 7
ARID2 WILD-TYPE 85 71 114 73
'ARID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0052

Table S2197.  Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARID2 MUTATED 4 13 7 3 2 0
ARID2 WILD-TYPE 48 51 65 101 38 59

Figure S1017.  Get High-res Image Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.001 (Fisher's exact test), Q value = 0.016

Table S2198.  Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARID2 MUTATED 25 3 1
ARID2 WILD-TYPE 192 72 98

Figure S1018.  Get High-res Image Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S2199.  Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARID2 MUTATED 10 5 8
ARID2 WILD-TYPE 111 103 64
'ARID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0057 (Fisher's exact test), Q value = 0.042

Table S2200.  Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARID2 MUTATED 8 2 7 0 6
ARID2 WILD-TYPE 80 64 38 55 41

Figure S1019.  Get High-res Image Gene #220: 'ARID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZMYM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00144 (Fisher's exact test), Q value = 0.019

Table S2201.  Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZMYM3 MUTATED 2 12 0 0
ZMYM3 WILD-TYPE 202 125 47 3

Figure S1020.  Get High-res Image Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZMYM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00182 (Fisher's exact test), Q value = 0.022

Table S2202.  Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZMYM3 MUTATED 0 9 3 0 1
ZMYM3 WILD-TYPE 39 87 41 88 79

Figure S1021.  Get High-res Image Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZMYM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.427 (Fisher's exact test), Q value = 0.54

Table S2203.  Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZMYM3 MUTATED 2 3 4 1 2
ZMYM3 WILD-TYPE 24 76 69 81 56
'ZMYM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S2204.  Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZMYM3 MUTATED 6 4 1 1
ZMYM3 WILD-TYPE 121 47 70 68
'ZMYM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.53

Table S2205.  Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZMYM3 MUTATED 1 3 6 3 2
ZMYM3 WILD-TYPE 83 82 79 66 45
'ZMYM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.44

Table S2206.  Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZMYM3 MUTATED 5 3 2 5
ZMYM3 WILD-TYPE 90 71 119 75
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0097 (Fisher's exact test), Q value = 0.056

Table S2207.  Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZMYM3 MUTATED 6 5 1 1 1 1
ZMYM3 WILD-TYPE 46 59 71 103 39 58

Figure S1022.  Get High-res Image Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S2208.  Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZMYM3 MUTATED 12 2 1
ZMYM3 WILD-TYPE 205 73 98
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.16

Table S2209.  Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZMYM3 MUTATED 7 1 5
ZMYM3 WILD-TYPE 114 107 67
'ZMYM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00376 (Fisher's exact test), Q value = 0.033

Table S2210.  Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZMYM3 MUTATED 2 1 4 0 6
ZMYM3 WILD-TYPE 86 65 41 55 41

Figure S1023.  Get High-res Image Gene #221: 'ZMYM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EOMES MUTATION STATUS' versus 'CN_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.37

Table S2211.  Gene #222: 'EOMES MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EOMES MUTATED 3 6 0 0
EOMES WILD-TYPE 201 131 47 3
'EOMES MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.45

Table S2212.  Gene #222: 'EOMES MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EOMES MUTATED 1 4 1 1 0
EOMES WILD-TYPE 38 92 43 87 80
'EOMES MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.63

Table S2213.  Gene #222: 'EOMES MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EOMES MUTATED 0 4 1 1 2
EOMES WILD-TYPE 26 75 72 81 56
'EOMES MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.52

Table S2214.  Gene #222: 'EOMES MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EOMES MUTATED 2 3 2 1
EOMES WILD-TYPE 125 48 69 68
'EOMES MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 0.97

Table S2215.  Gene #222: 'EOMES MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EOMES MUTATED 1 2 3 2 1
EOMES WILD-TYPE 83 83 82 67 46
'EOMES MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.498 (Fisher's exact test), Q value = 0.61

Table S2216.  Gene #222: 'EOMES MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EOMES MUTATED 3 2 1 3
EOMES WILD-TYPE 92 72 120 77
'EOMES MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S2217.  Gene #222: 'EOMES MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EOMES MUTATED 4 2 1 2 0 0
EOMES WILD-TYPE 48 62 71 102 40 59
'EOMES MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 0.74

Table S2218.  Gene #222: 'EOMES MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EOMES MUTATED 6 2 1
EOMES WILD-TYPE 211 73 98
'EOMES MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.17

Table S2219.  Gene #222: 'EOMES MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EOMES MUTATED 6 1 0
EOMES WILD-TYPE 115 107 72
'EOMES MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S2220.  Gene #222: 'EOMES MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EOMES MUTATED 3 1 0 0 3
EOMES WILD-TYPE 85 65 45 55 44
'BPTF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.016

Table S2221.  Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BPTF MUTATED 8 21 1 0
BPTF WILD-TYPE 196 116 46 3

Figure S1024.  Get High-res Image Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BPTF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00208 (Fisher's exact test), Q value = 0.024

Table S2222.  Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BPTF MUTATED 1 13 4 5 0
BPTF WILD-TYPE 38 83 40 83 80

Figure S1025.  Get High-res Image Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BPTF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S2223.  Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BPTF MUTATED 2 9 7 3 8
BPTF WILD-TYPE 24 70 66 79 50
'BPTF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0041

Table S2224.  Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BPTF MUTATED 5 14 6 4
BPTF WILD-TYPE 122 37 65 65

Figure S1026.  Get High-res Image Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BPTF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00998 (Fisher's exact test), Q value = 0.057

Table S2225.  Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BPTF MUTATED 3 7 11 1 7
BPTF WILD-TYPE 81 78 74 68 40

Figure S1027.  Get High-res Image Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BPTF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0058

Table S2226.  Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BPTF MUTATED 7 5 2 15
BPTF WILD-TYPE 88 69 119 65

Figure S1028.  Get High-res Image Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BPTF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0319 (Fisher's exact test), Q value = 0.11

Table S2227.  Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BPTF MUTATED 8 8 6 3 1 3
BPTF WILD-TYPE 44 56 66 101 39 56

Figure S1029.  Get High-res Image Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BPTF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00235 (Fisher's exact test), Q value = 0.025

Table S2228.  Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BPTF MUTATED 23 0 6
BPTF WILD-TYPE 194 75 93

Figure S1030.  Get High-res Image Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BPTF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S2229.  Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BPTF MUTATED 10 3 6
BPTF WILD-TYPE 111 105 66
'BPTF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.012

Table S2230.  Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BPTF MUTATED 7 0 1 2 9
BPTF WILD-TYPE 81 66 44 53 38

Figure S1031.  Get High-res Image Gene #223: 'BPTF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MTIF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S2231.  Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MTIF2 MUTATED 1 15 2 0
MTIF2 WILD-TYPE 203 122 45 3

Figure S1032.  Get High-res Image Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTIF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00483 (Fisher's exact test), Q value = 0.038

Table S2232.  Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MTIF2 MUTATED 0 8 5 1 1
MTIF2 WILD-TYPE 39 88 39 87 79

Figure S1033.  Get High-res Image Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTIF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.17

Table S2233.  Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MTIF2 MUTATED 1 5 4 0 5
MTIF2 WILD-TYPE 25 74 69 82 53
'MTIF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 0.2

Table S2234.  Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MTIF2 MUTATED 5 6 3 1
MTIF2 WILD-TYPE 122 45 68 68
'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S2235.  Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MTIF2 MUTATED 1 3 8 3 1
MTIF2 WILD-TYPE 83 82 77 66 46
'MTIF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.59

Table S2236.  Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MTIF2 MUTATED 4 2 4 6
MTIF2 WILD-TYPE 91 72 117 74
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.16

Table S2237.  Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MTIF2 MUTATED 4 6 5 2 0 1
MTIF2 WILD-TYPE 48 58 67 102 40 58
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.57

Table S2238.  Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MTIF2 MUTATED 13 2 3
MTIF2 WILD-TYPE 204 73 96
'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0437 (Fisher's exact test), Q value = 0.13

Table S2239.  Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MTIF2 MUTATED 5 1 6
MTIF2 WILD-TYPE 116 107 66

Figure S1034.  Get High-res Image Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MTIF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.65

Table S2240.  Gene #224: 'MTIF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MTIF2 MUTATED 3 2 2 1 4
MTIF2 WILD-TYPE 85 64 43 54 43
'ARHGAP18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.59

Table S2241.  Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARHGAP18 MUTATED 4 5 0 0
ARHGAP18 WILD-TYPE 200 132 47 3
'ARHGAP18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S2242.  Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARHGAP18 MUTATED 0 4 1 2 0
ARHGAP18 WILD-TYPE 39 92 43 86 80
'ARHGAP18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.45

Table S2243.  Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARHGAP18 MUTATED 0 3 3 0 2
ARHGAP18 WILD-TYPE 26 76 70 82 56
'ARHGAP18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S2244.  Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARHGAP18 MUTATED 2 4 1 1
ARHGAP18 WILD-TYPE 125 47 70 68
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.2

Table S2245.  Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARHGAP18 MUTATED 1 1 4 0 3
ARHGAP18 WILD-TYPE 83 84 81 69 44
'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.62

Table S2246.  Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARHGAP18 MUTATED 2 1 2 4
ARHGAP18 WILD-TYPE 93 73 119 76
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S2247.  Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARHGAP18 MUTATED 4 3 2 0 0 0
ARHGAP18 WILD-TYPE 48 61 70 104 40 59

Figure S1035.  Get High-res Image Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S2248.  Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARHGAP18 MUTATED 8 0 1
ARHGAP18 WILD-TYPE 209 75 98
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.55

Table S2249.  Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARHGAP18 MUTATED 3 1 3
ARHGAP18 WILD-TYPE 118 107 69
'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S2250.  Gene #225: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARHGAP18 MUTATED 3 0 1 0 3
ARHGAP18 WILD-TYPE 85 66 44 55 44
'EFNB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S2251.  Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EFNB3 MUTATED 4 8 1 0
EFNB3 WILD-TYPE 200 129 46 3
'EFNB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00443 (Fisher's exact test), Q value = 0.036

Table S2252.  Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EFNB3 MUTATED 0 8 3 1 0
EFNB3 WILD-TYPE 39 88 41 87 80

Figure S1036.  Get High-res Image Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EFNB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.75

Table S2253.  Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EFNB3 MUTATED 0 5 2 2 2
EFNB3 WILD-TYPE 26 74 71 80 56
'EFNB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00496 (Fisher's exact test), Q value = 0.038

Table S2254.  Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EFNB3 MUTATED 0 4 4 3
EFNB3 WILD-TYPE 127 47 67 66

Figure S1037.  Get High-res Image Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EFNB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.13

Table S2255.  Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EFNB3 MUTATED 1 3 7 0 2
EFNB3 WILD-TYPE 83 82 78 69 45

Figure S1038.  Get High-res Image Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EFNB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0799 (Fisher's exact test), Q value = 0.19

Table S2256.  Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EFNB3 MUTATED 3 3 1 6
EFNB3 WILD-TYPE 92 71 120 74
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S2257.  Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EFNB3 MUTATED 1 5 3 2 2 0
EFNB3 WILD-TYPE 51 59 69 102 38 59
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S2258.  Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EFNB3 MUTATED 10 1 2
EFNB3 WILD-TYPE 207 74 97
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.2

Table S2259.  Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EFNB3 MUTATED 3 2 6
EFNB3 WILD-TYPE 118 106 66
'EFNB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 0.12

Table S2260.  Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EFNB3 MUTATED 6 0 3 0 2
EFNB3 WILD-TYPE 82 66 42 55 45

Figure S1039.  Get High-res Image Gene #226: 'EFNB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NDST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.15

Table S2261.  Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NDST2 MUTATED 2 8 1 0
NDST2 WILD-TYPE 202 129 46 3
'NDST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S2262.  Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NDST2 MUTATED 0 5 1 0 1
NDST2 WILD-TYPE 39 91 43 88 79
'NDST2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S2263.  Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NDST2 MUTATED 1 4 3 0 2
NDST2 WILD-TYPE 25 75 70 82 56
'NDST2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.086

Table S2264.  Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NDST2 MUTATED 4 5 1 0
NDST2 WILD-TYPE 123 46 70 69

Figure S1040.  Get High-res Image Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NDST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.011

Table S2265.  Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NDST2 MUTATED 0 0 8 1 2
NDST2 WILD-TYPE 84 85 77 68 45

Figure S1041.  Get High-res Image Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NDST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S2266.  Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NDST2 MUTATED 4 1 2 4
NDST2 WILD-TYPE 91 73 119 76
'NDST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S2267.  Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NDST2 MUTATED 2 5 2 1 0 1
NDST2 WILD-TYPE 50 59 70 103 40 58
'NDST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 0.16

Table S2268.  Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NDST2 MUTATED 10 0 1
NDST2 WILD-TYPE 207 75 98
'NDST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.12

Table S2269.  Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NDST2 MUTATED 4 0 4
NDST2 WILD-TYPE 117 108 68

Figure S1042.  Get High-res Image Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NDST2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S2270.  Gene #227: 'NDST2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NDST2 MUTATED 2 0 2 1 3
NDST2 WILD-TYPE 86 66 43 54 44
'MICALCL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S2271.  Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MICALCL MUTATED 5 9 1 0
MICALCL WILD-TYPE 199 128 46 3
'MICALCL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 0.89

Table S2272.  Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MICALCL MUTATED 2 2 2 3 3
MICALCL WILD-TYPE 37 94 42 85 77
'MICALCL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.12

Table S2273.  Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MICALCL MUTATED 0 5 1 1 6
MICALCL WILD-TYPE 26 74 72 81 52

Figure S1043.  Get High-res Image Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MICALCL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0815 (Fisher's exact test), Q value = 0.19

Table S2274.  Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MICALCL MUTATED 3 5 4 1
MICALCL WILD-TYPE 124 46 67 68
'MICALCL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.89

Table S2275.  Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MICALCL MUTATED 4 3 4 1 2
MICALCL WILD-TYPE 80 82 81 68 45
'MICALCL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S2276.  Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MICALCL MUTATED 3 2 5 4
MICALCL WILD-TYPE 92 72 116 76
'MICALCL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S2277.  Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MICALCL MUTATED 2 4 3 4 0 2
MICALCL WILD-TYPE 50 60 69 100 40 57
'MICALCL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S2278.  Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MICALCL MUTATED 11 2 2
MICALCL WILD-TYPE 206 73 97
'MICALCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 0.84

Table S2279.  Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MICALCL MUTATED 3 4 3
MICALCL WILD-TYPE 118 104 69
'MICALCL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.93

Table S2280.  Gene #228: 'MICALCL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MICALCL MUTATED 2 3 1 2 2
MICALCL WILD-TYPE 86 63 44 53 45
'MMP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.015

Table S2281.  Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MMP3 MUTATED 1 11 0 0
MMP3 WILD-TYPE 203 126 47 3

Figure S1044.  Get High-res Image Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MMP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.42

Table S2282.  Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MMP3 MUTATED 0 6 1 1 3
MMP3 WILD-TYPE 39 90 43 87 77
'MMP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.4

Table S2283.  Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MMP3 MUTATED 1 1 5 1 2
MMP3 WILD-TYPE 25 78 68 81 56
'MMP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00362 (Fisher's exact test), Q value = 0.033

Table S2284.  Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MMP3 MUTATED 1 6 1 2
MMP3 WILD-TYPE 126 45 70 67

Figure S1045.  Get High-res Image Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MMP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S2285.  Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MMP3 MUTATED 0 0 9 3 0
MMP3 WILD-TYPE 84 85 76 66 47

Figure S1046.  Get High-res Image Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MMP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S2286.  Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MMP3 MUTATED 4 1 2 5
MMP3 WILD-TYPE 91 73 119 75
'MMP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00964 (Fisher's exact test), Q value = 0.056

Table S2287.  Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MMP3 MUTATED 3 5 2 0 2 0
MMP3 WILD-TYPE 49 59 70 104 38 59

Figure S1047.  Get High-res Image Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MMP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.45

Table S2288.  Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MMP3 MUTATED 9 2 1
MMP3 WILD-TYPE 208 73 98
'MMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S2289.  Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MMP3 MUTATED 5 0 5
MMP3 WILD-TYPE 116 108 67

Figure S1048.  Get High-res Image Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S2290.  Gene #229: 'MMP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MMP3 MUTATED 4 0 3 0 3
MMP3 WILD-TYPE 84 66 42 55 44
'OPTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.13

Table S2291.  Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OPTN MUTATED 3 9 0 0
OPTN WILD-TYPE 201 128 47 3

Figure S1049.  Get High-res Image Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OPTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.57

Table S2292.  Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OPTN MUTATED 0 5 1 1 2
OPTN WILD-TYPE 39 91 43 87 78
'OPTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.18

Table S2293.  Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OPTN MUTATED 1 6 3 0 1
OPTN WILD-TYPE 25 73 70 82 57
'OPTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00971 (Fisher's exact test), Q value = 0.056

Table S2294.  Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OPTN MUTATED 2 5 4 0
OPTN WILD-TYPE 125 46 67 69

Figure S1050.  Get High-res Image Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OPTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S2295.  Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OPTN MUTATED 0 3 6 2 1
OPTN WILD-TYPE 84 82 79 67 46
'OPTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.27

Table S2296.  Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OPTN MUTATED 3 1 2 6
OPTN WILD-TYPE 92 73 119 74
'OPTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.076

Table S2297.  Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OPTN MUTATED 3 6 0 2 0 1
OPTN WILD-TYPE 49 58 72 102 40 58

Figure S1051.  Get High-res Image Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OPTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.63

Table S2298.  Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OPTN MUTATED 9 1 2
OPTN WILD-TYPE 208 74 97
'OPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S2299.  Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OPTN MUTATED 2 2 4
OPTN WILD-TYPE 119 106 68
'OPTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S2300.  Gene #230: 'OPTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OPTN MUTATED 1 0 3 2 2
OPTN WILD-TYPE 87 66 42 53 45
'ZFHX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00049 (Fisher's exact test), Q value = 0.011

Table S2301.  Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZFHX3 MUTATED 9 25 4 0
ZFHX3 WILD-TYPE 195 112 43 3

Figure S1052.  Get High-res Image Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFHX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.013

Table S2302.  Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZFHX3 MUTATED 2 19 3 3 3
ZFHX3 WILD-TYPE 37 77 41 85 77

Figure S1053.  Get High-res Image Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.12

Table S2303.  Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZFHX3 MUTATED 3 11 7 2 9
ZFHX3 WILD-TYPE 23 68 66 80 49

Figure S1054.  Get High-res Image Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZFHX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S2304.  Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZFHX3 MUTATED 8 15 7 2
ZFHX3 WILD-TYPE 119 36 64 67

Figure S1055.  Get High-res Image Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S2305.  Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZFHX3 MUTATED 3 4 20 4 4
ZFHX3 WILD-TYPE 81 81 65 65 43

Figure S1056.  Get High-res Image Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZFHX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00166 (Fisher's exact test), Q value = 0.021

Table S2306.  Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZFHX3 MUTATED 9 6 4 16
ZFHX3 WILD-TYPE 86 68 117 64

Figure S1057.  Get High-res Image Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.0087

Table S2307.  Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZFHX3 MUTATED 9 15 6 4 1 3
ZFHX3 WILD-TYPE 43 49 66 100 39 56

Figure S1058.  Get High-res Image Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S2308.  Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZFHX3 MUTATED 27 4 7
ZFHX3 WILD-TYPE 190 71 92
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.38

Table S2309.  Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZFHX3 MUTATED 12 7 10
ZFHX3 WILD-TYPE 109 101 62
'ZFHX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S2310.  Gene #231: 'ZFHX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZFHX3 MUTATED 7 3 7 4 8
ZFHX3 WILD-TYPE 81 63 38 51 39
'ACP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.013

Table S2311.  Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ACP1 MUTATED 0 9 0 0
ACP1 WILD-TYPE 204 128 47 3

Figure S1059.  Get High-res Image Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00574 (Fisher's exact test), Q value = 0.042

Table S2312.  Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ACP1 MUTATED 0 6 0 0 0
ACP1 WILD-TYPE 39 90 44 88 80

Figure S1060.  Get High-res Image Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.61

Table S2313.  Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ACP1 MUTATED 0 2 2 0 2
ACP1 WILD-TYPE 26 77 71 82 56
'ACP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00027 (Fisher's exact test), Q value = 0.0073

Table S2314.  Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ACP1 MUTATED 0 5 0 1
ACP1 WILD-TYPE 127 46 71 68

Figure S1061.  Get High-res Image Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S2315.  Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ACP1 MUTATED 0 3 4 1 0
ACP1 WILD-TYPE 84 82 81 68 47
'ACP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0474 (Fisher's exact test), Q value = 0.14

Table S2316.  Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ACP1 MUTATED 3 1 0 4
ACP1 WILD-TYPE 92 73 121 76

Figure S1062.  Get High-res Image Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.094

Table S2317.  Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ACP1 MUTATED 3 3 1 0 2 0
ACP1 WILD-TYPE 49 61 71 104 38 59

Figure S1063.  Get High-res Image Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ACP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.5

Table S2318.  Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ACP1 MUTATED 6 0 3
ACP1 WILD-TYPE 211 75 96
'ACP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.89

Table S2319.  Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ACP1 MUTATED 3 1 1
ACP1 WILD-TYPE 118 107 71
'ACP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.063 (Fisher's exact test), Q value = 0.16

Table S2320.  Gene #232: 'ACP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ACP1 MUTATED 2 0 0 0 3
ACP1 WILD-TYPE 86 66 45 55 44
'YY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.091

Table S2321.  Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
YY1 MUTATED 1 7 0 0
YY1 WILD-TYPE 203 130 47 3

Figure S1064.  Get High-res Image Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'YY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S2322.  Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
YY1 MUTATED 0 3 2 1 0
YY1 WILD-TYPE 39 93 42 87 80
'YY1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2323.  Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
YY1 MUTATED 0 2 2 2 1
YY1 WILD-TYPE 26 77 71 80 57
'YY1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 0.8

Table S2324.  Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
YY1 MUTATED 2 2 2 1
YY1 WILD-TYPE 125 49 69 68
'YY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.51

Table S2325.  Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
YY1 MUTATED 1 2 4 0 1
YY1 WILD-TYPE 83 83 81 69 46
'YY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S2326.  Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
YY1 MUTATED 1 1 2 4
YY1 WILD-TYPE 94 73 119 76
'YY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.67

Table S2327.  Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
YY1 MUTATED 1 3 2 2 0 0
YY1 WILD-TYPE 51 61 70 102 40 59
'YY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.11

Table S2328.  Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
YY1 MUTATED 8 0 0
YY1 WILD-TYPE 209 75 99

Figure S1065.  Get High-res Image Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'YY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S2329.  Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
YY1 MUTATED 4 2 0
YY1 WILD-TYPE 117 106 72
'YY1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S2330.  Gene #233: 'YY1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
YY1 MUTATED 4 1 0 0 1
YY1 WILD-TYPE 84 65 45 55 46
'CUL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.11

Table S2331.  Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CUL2 MUTATED 1 7 1 0
CUL2 WILD-TYPE 203 130 46 3

Figure S1066.  Get High-res Image Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CUL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.1

Table S2332.  Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CUL2 MUTATED 1 5 2 0 0
CUL2 WILD-TYPE 38 91 42 88 80

Figure S1067.  Get High-res Image Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CUL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.66

Table S2333.  Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CUL2 MUTATED 0 4 3 1 1
CUL2 WILD-TYPE 26 75 70 81 57
'CUL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00432 (Fisher's exact test), Q value = 0.035

Table S2334.  Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CUL2 MUTATED 1 5 3 0
CUL2 WILD-TYPE 126 46 68 69

Figure S1068.  Get High-res Image Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CUL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S2335.  Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CUL2 MUTATED 0 3 4 1 0
CUL2 WILD-TYPE 84 82 81 68 47
'CUL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.079

Table S2336.  Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CUL2 MUTATED 2 1 0 5
CUL2 WILD-TYPE 93 73 121 75

Figure S1069.  Get High-res Image Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CUL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.53

Table S2337.  Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CUL2 MUTATED 0 3 3 1 1 1
CUL2 WILD-TYPE 52 61 69 103 39 58
'CUL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.097 (Fisher's exact test), Q value = 0.21

Table S2338.  Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CUL2 MUTATED 8 1 0
CUL2 WILD-TYPE 209 74 99
'CUL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2339.  Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CUL2 MUTATED 3 2 2
CUL2 WILD-TYPE 118 106 70
'CUL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.68

Table S2340.  Gene #234: 'CUL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CUL2 MUTATED 1 1 2 1 2
CUL2 WILD-TYPE 87 65 43 54 45
'DAO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S2341.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DAO MUTATED 3 10 1 0
DAO WILD-TYPE 201 127 46 3

Figure S1070.  Get High-res Image Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DAO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.15

Table S2342.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DAO MUTATED 2 6 2 0 1
DAO WILD-TYPE 37 90 42 88 79
'DAO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S2343.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DAO MUTATED 2 4 3 0 2
DAO WILD-TYPE 24 75 70 82 56
'DAO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S2344.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DAO MUTATED 4 4 3 0
DAO WILD-TYPE 123 47 68 69
'DAO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 0.97

Table S2345.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DAO MUTATED 2 3 4 3 2
DAO WILD-TYPE 82 82 81 66 45
'DAO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S2346.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DAO MUTATED 6 1 2 5
DAO WILD-TYPE 89 73 119 75
'DAO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S2347.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DAO MUTATED 4 1 2 3 2 2
DAO WILD-TYPE 48 63 70 101 38 57
'DAO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.67

Table S2348.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DAO MUTATED 10 2 2
DAO WILD-TYPE 207 73 97
'DAO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 0.88

Table S2349.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DAO MUTATED 3 3 3
DAO WILD-TYPE 118 105 69
'DAO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S2350.  Gene #235: 'DAO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DAO MUTATED 4 2 0 0 3
DAO WILD-TYPE 84 64 45 55 44
'TRUB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00685 (Fisher's exact test), Q value = 0.046

Table S2351.  Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TRUB1 MUTATED 1 9 1 0
TRUB1 WILD-TYPE 203 128 46 3

Figure S1071.  Get High-res Image Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRUB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.36

Table S2352.  Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TRUB1 MUTATED 2 4 1 0 2
TRUB1 WILD-TYPE 37 92 43 88 78
'TRUB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.51

Table S2353.  Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TRUB1 MUTATED 1 5 2 1 1
TRUB1 WILD-TYPE 25 74 71 81 57
'TRUB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S2354.  Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TRUB1 MUTATED 2 4 3 1
TRUB1 WILD-TYPE 125 47 68 68
'TRUB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.11

Table S2355.  Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TRUB1 MUTATED 1 2 7 0 1
TRUB1 WILD-TYPE 83 83 78 69 46

Figure S1072.  Get High-res Image Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRUB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S2356.  Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TRUB1 MUTATED 2 2 2 5
TRUB1 WILD-TYPE 93 72 119 75
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S2357.  Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TRUB1 MUTATED 4 3 0 3 0 1
TRUB1 WILD-TYPE 48 61 72 101 40 58
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S2358.  Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TRUB1 MUTATED 9 1 1
TRUB1 WILD-TYPE 208 74 98
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S2359.  Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TRUB1 MUTATED 5 1 3
TRUB1 WILD-TYPE 116 107 69
'TRUB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.2

Table S2360.  Gene #236: 'TRUB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TRUB1 MUTATED 4 0 2 0 3
TRUB1 WILD-TYPE 84 66 43 55 44
'PKN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.019

Table S2361.  Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PKN2 MUTATED 2 13 1 0
PKN2 WILD-TYPE 202 124 46 3

Figure S1073.  Get High-res Image Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PKN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.56

Table S2362.  Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PKN2 MUTATED 1 6 2 1 3
PKN2 WILD-TYPE 38 90 42 87 77
'PKN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.54

Table S2363.  Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PKN2 MUTATED 0 6 2 2 3
PKN2 WILD-TYPE 26 73 71 80 55
'PKN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0995 (Fisher's exact test), Q value = 0.22

Table S2364.  Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PKN2 MUTATED 2 4 5 2
PKN2 WILD-TYPE 125 47 66 67
'PKN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.22

Table S2365.  Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PKN2 MUTATED 0 4 4 3 4
PKN2 WILD-TYPE 84 81 81 66 43
'PKN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.1

Table S2366.  Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PKN2 MUTATED 5 2 1 7
PKN2 WILD-TYPE 90 72 120 73

Figure S1074.  Get High-res Image Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PKN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.089

Table S2367.  Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PKN2 MUTATED 7 3 3 2 0 1
PKN2 WILD-TYPE 45 61 69 102 40 58

Figure S1075.  Get High-res Image Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PKN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.3

Table S2368.  Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PKN2 MUTATED 12 3 1
PKN2 WILD-TYPE 205 72 98
'PKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.19

Table S2369.  Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PKN2 MUTATED 8 1 2
PKN2 WILD-TYPE 113 107 70
'PKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 0.18

Table S2370.  Gene #237: 'PKN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PKN2 MUTATED 2 3 0 1 5
PKN2 WILD-TYPE 86 63 45 54 42
'KLHDC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S2371.  Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KLHDC5 MUTATED 1 8 1 0
KLHDC5 WILD-TYPE 203 129 46 3

Figure S1076.  Get High-res Image Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLHDC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S2372.  Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KLHDC5 MUTATED 0 4 2 1 1
KLHDC5 WILD-TYPE 39 92 42 87 79
'KLHDC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.31

Table S2373.  Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KLHDC5 MUTATED 0 3 4 0 1
KLHDC5 WILD-TYPE 26 76 69 82 57
'KLHDC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00629 (Fisher's exact test), Q value = 0.044

Table S2374.  Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KLHDC5 MUTATED 0 4 3 1
KLHDC5 WILD-TYPE 127 47 68 68

Figure S1077.  Get High-res Image Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KLHDC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00605 (Fisher's exact test), Q value = 0.043

Table S2375.  Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KLHDC5 MUTATED 0 0 6 1 2
KLHDC5 WILD-TYPE 84 85 79 68 45

Figure S1078.  Get High-res Image Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KLHDC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S2376.  Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KLHDC5 MUTATED 2 1 1 5
KLHDC5 WILD-TYPE 93 73 120 75
'KLHDC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S2377.  Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KLHDC5 MUTATED 2 4 2 1 1 0
KLHDC5 WILD-TYPE 50 60 70 103 39 59
'KLHDC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.71

Table S2378.  Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KLHDC5 MUTATED 7 2 1
KLHDC5 WILD-TYPE 210 73 98
'KLHDC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.14

Table S2379.  Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KLHDC5 MUTATED 3 0 4
KLHDC5 WILD-TYPE 118 108 68

Figure S1079.  Get High-res Image Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KLHDC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 0.7

Table S2380.  Gene #238: 'KLHDC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KLHDC5 MUTATED 3 1 1 0 2
KLHDC5 WILD-TYPE 85 65 44 55 45
'TFE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.29

Table S2381.  Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TFE3 MUTATED 2 5 2 0
TFE3 WILD-TYPE 202 132 45 3
'TFE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00407 (Fisher's exact test), Q value = 0.034

Table S2382.  Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TFE3 MUTATED 0 7 1 0 0
TFE3 WILD-TYPE 39 89 43 88 80

Figure S1080.  Get High-res Image Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TFE3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.68

Table S2383.  Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TFE3 MUTATED 0 1 2 1 3
TFE3 WILD-TYPE 26 78 71 81 55
'TFE3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00114 (Fisher's exact test), Q value = 0.017

Table S2384.  Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TFE3 MUTATED 0 5 1 1
TFE3 WILD-TYPE 127 46 70 68

Figure S1081.  Get High-res Image Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.17

Table S2385.  Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TFE3 MUTATED 1 0 4 1 3
TFE3 WILD-TYPE 83 85 81 68 44
'TFE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00997 (Fisher's exact test), Q value = 0.057

Table S2386.  Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TFE3 MUTATED 2 0 1 6
TFE3 WILD-TYPE 93 74 120 74

Figure S1082.  Get High-res Image Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.061

Table S2387.  Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TFE3 MUTATED 4 3 2 0 0 0
TFE3 WILD-TYPE 48 61 70 104 40 59

Figure S1083.  Get High-res Image Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 0.11

Table S2388.  Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TFE3 MUTATED 9 0 0
TFE3 WILD-TYPE 208 75 99

Figure S1084.  Get High-res Image Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.19

Table S2389.  Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TFE3 MUTATED 4 0 3
TFE3 WILD-TYPE 117 108 69
'TFE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S2390.  Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TFE3 MUTATED 1 0 2 0 4
TFE3 WILD-TYPE 87 66 43 55 43

Figure S1085.  Get High-res Image Gene #239: 'TFE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0082 (Fisher's exact test), Q value = 0.05

Table S2391.  Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GCC2 MUTATED 2 11 1 0
GCC2 WILD-TYPE 202 126 46 3

Figure S1086.  Get High-res Image Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S2392.  Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GCC2 MUTATED 1 4 3 1 1
GCC2 WILD-TYPE 38 92 41 87 79
'GCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.082

Table S2393.  Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GCC2 MUTATED 1 8 2 0 3
GCC2 WILD-TYPE 25 71 71 82 55

Figure S1087.  Get High-res Image Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00455 (Fisher's exact test), Q value = 0.036

Table S2394.  Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GCC2 MUTATED 3 6 5 0
GCC2 WILD-TYPE 124 45 66 69

Figure S1088.  Get High-res Image Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S2395.  Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GCC2 MUTATED 1 0 11 1 0
GCC2 WILD-TYPE 83 85 74 68 47

Figure S1089.  Get High-res Image Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.63

Table S2396.  Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GCC2 MUTATED 2 2 4 5
GCC2 WILD-TYPE 93 72 117 75
'GCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00295 (Fisher's exact test), Q value = 0.029

Table S2397.  Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GCC2 MUTATED 3 7 3 0 0 1
GCC2 WILD-TYPE 49 57 69 104 40 58

Figure S1090.  Get High-res Image Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.067

Table S2398.  Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GCC2 MUTATED 13 0 1
GCC2 WILD-TYPE 204 75 98

Figure S1091.  Get High-res Image Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S2399.  Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GCC2 MUTATED 3 1 4
GCC2 WILD-TYPE 118 107 68
'GCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S2400.  Gene #240: 'GCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GCC2 MUTATED 2 0 3 1 2
GCC2 WILD-TYPE 86 66 42 54 45
'ARAF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00786 (Fisher's exact test), Q value = 0.049

Table S2401.  Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARAF MUTATED 1 9 2 0
ARAF WILD-TYPE 203 128 45 3

Figure S1092.  Get High-res Image Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 0.19

Table S2402.  Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARAF MUTATED 1 7 0 1 1
ARAF WILD-TYPE 38 89 44 87 79
'ARAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.38

Table S2403.  Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARAF MUTATED 1 3 2 0 3
ARAF WILD-TYPE 25 76 71 82 55
'ARAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.074

Table S2404.  Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARAF MUTATED 1 5 2 1
ARAF WILD-TYPE 126 46 69 68

Figure S1093.  Get High-res Image Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.1

Table S2405.  Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARAF MUTATED 2 2 7 0 0
ARAF WILD-TYPE 82 83 78 69 47

Figure S1094.  Get High-res Image Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S2406.  Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARAF MUTATED 3 1 2 5
ARAF WILD-TYPE 92 73 119 75
'ARAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.12

Table S2407.  Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARAF MUTATED 1 5 3 0 2 1
ARAF WILD-TYPE 51 59 69 104 38 58

Figure S1095.  Get High-res Image Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 0.34

Table S2408.  Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARAF MUTATED 9 0 3
ARAF WILD-TYPE 208 75 96
'ARAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.17

Table S2409.  Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARAF MUTATED 4 1 5
ARAF WILD-TYPE 117 107 67
'ARAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S2410.  Gene #241: 'ARAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARAF MUTATED 3 0 3 1 3
ARAF WILD-TYPE 85 66 42 54 44
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 0.98

Table S2411.  Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDKN2A MUTATED 9 5 2 0
CDKN2A WILD-TYPE 195 132 45 3
'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.38

Table S2412.  Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDKN2A MUTATED 3 6 0 2 3
CDKN2A WILD-TYPE 36 90 44 86 77
'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S2413.  Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDKN2A MUTATED 0 4 5 1 0
CDKN2A WILD-TYPE 26 75 68 81 58
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.64

Table S2414.  Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDKN2A MUTATED 6 2 1 1
CDKN2A WILD-TYPE 121 49 70 68
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S2415.  Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDKN2A MUTATED 6 2 2 5 1
CDKN2A WILD-TYPE 78 83 83 64 46
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 0.92

Table S2416.  Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDKN2A MUTATED 5 2 6 3
CDKN2A WILD-TYPE 90 72 115 77
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 0.17

Table S2417.  Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDKN2A MUTATED 5 2 1 2 4 2
CDKN2A WILD-TYPE 47 62 71 102 36 57
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.45

Table S2418.  Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDKN2A MUTATED 9 1 6
CDKN2A WILD-TYPE 208 74 93
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S2419.  Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDKN2A MUTATED 11 2 1
CDKN2A WILD-TYPE 110 106 71

Figure S1096.  Get High-res Image Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0371 (Fisher's exact test), Q value = 0.12

Table S2420.  Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDKN2A MUTATED 2 1 1 4 6
CDKN2A WILD-TYPE 86 65 44 51 41

Figure S1097.  Get High-res Image Gene #242: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MDM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S2421.  Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MDM2 MUTATED 1 4 2 0
MDM2 WILD-TYPE 203 133 45 3
'MDM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S2422.  Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MDM2 MUTATED 1 3 0 0 1
MDM2 WILD-TYPE 38 93 44 88 79
'MDM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.71

Table S2423.  Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MDM2 MUTATED 1 1 3 1 1
MDM2 WILD-TYPE 25 78 70 81 57
'MDM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0375 (Fisher's exact test), Q value = 0.12

Table S2424.  Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MDM2 MUTATED 2 4 0 1
MDM2 WILD-TYPE 125 47 71 68

Figure S1098.  Get High-res Image Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MDM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S2425.  Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MDM2 MUTATED 1 1 4 0 0
MDM2 WILD-TYPE 83 84 81 69 47
'MDM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S2426.  Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MDM2 MUTATED 2 1 0 3
MDM2 WILD-TYPE 93 73 121 77
'MDM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.66

Table S2427.  Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MDM2 MUTATED 2 2 0 2 0 1
MDM2 WILD-TYPE 50 62 72 102 40 58
'MDM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 0.92

Table S2428.  Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MDM2 MUTATED 5 1 1
MDM2 WILD-TYPE 212 74 98
'MDM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2429.  Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MDM2 MUTATED 1 1 1
MDM2 WILD-TYPE 120 107 71
'MDM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.5

Table S2430.  Gene #243: 'MDM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MDM2 MUTATED 0 1 1 0 1
MDM2 WILD-TYPE 88 65 44 55 46
'C4ORF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0044

Table S2431.  Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C4ORF6 MUTATED 0 11 0 0
C4ORF6 WILD-TYPE 204 126 47 3

Figure S1099.  Get High-res Image Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C4ORF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0586 (Fisher's exact test), Q value = 0.16

Table S2432.  Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C4ORF6 MUTATED 1 5 3 0 1
C4ORF6 WILD-TYPE 38 91 41 88 79
'C4ORF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S2433.  Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C4ORF6 MUTATED 1 4 3 0 1
C4ORF6 WILD-TYPE 25 75 70 82 57
'C4ORF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S2434.  Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C4ORF6 MUTATED 2 5 2 0
C4ORF6 WILD-TYPE 125 46 69 69

Figure S1100.  Get High-res Image Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C4ORF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.079

Table S2435.  Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C4ORF6 MUTATED 0 2 6 0 2
C4ORF6 WILD-TYPE 84 83 79 69 45

Figure S1101.  Get High-res Image Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C4ORF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S2436.  Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C4ORF6 MUTATED 1 0 1 8
C4ORF6 WILD-TYPE 94 74 120 72

Figure S1102.  Get High-res Image Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C4ORF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00949 (Fisher's exact test), Q value = 0.055

Table S2437.  Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C4ORF6 MUTATED 5 4 0 2 1 0
C4ORF6 WILD-TYPE 47 60 72 102 39 59

Figure S1103.  Get High-res Image Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C4ORF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S2438.  Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C4ORF6 MUTATED 10 1 1
C4ORF6 WILD-TYPE 207 74 98
'C4ORF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.7

Table S2439.  Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C4ORF6 MUTATED 5 2 3
C4ORF6 WILD-TYPE 116 106 69
'C4ORF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S2440.  Gene #244: 'C4ORF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C4ORF6 MUTATED 4 1 1 0 4
C4ORF6 WILD-TYPE 84 65 44 55 43
'CASC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S2441.  Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CASC3 MUTATED 3 7 1 0
CASC3 WILD-TYPE 201 130 46 3
'CASC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.56

Table S2442.  Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CASC3 MUTATED 1 6 1 2 1
CASC3 WILD-TYPE 38 90 43 86 79
'CASC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S2443.  Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CASC3 MUTATED 0 5 2 0 3
CASC3 WILD-TYPE 26 74 71 82 55
'CASC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0891 (Fisher's exact test), Q value = 0.2

Table S2444.  Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CASC3 MUTATED 3 2 5 0
CASC3 WILD-TYPE 124 49 66 69
'CASC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S2445.  Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CASC3 MUTATED 1 2 5 1 2
CASC3 WILD-TYPE 83 83 80 68 45
'CASC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.1

Table S2446.  Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CASC3 MUTATED 1 3 1 6
CASC3 WILD-TYPE 94 71 120 74

Figure S1104.  Get High-res Image Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CASC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.51

Table S2447.  Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CASC3 MUTATED 3 0 2 4 0 2
CASC3 WILD-TYPE 49 64 70 100 40 57
'CASC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S2448.  Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CASC3 MUTATED 8 1 2
CASC3 WILD-TYPE 209 74 97
'CASC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.74

Table S2449.  Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CASC3 MUTATED 5 4 1
CASC3 WILD-TYPE 116 104 71
'CASC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 0.58

Table S2450.  Gene #245: 'CASC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CASC3 MUTATED 5 1 0 2 2
CASC3 WILD-TYPE 83 65 45 53 45
'CCDC153 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.15

Table S2451.  Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCDC153 MUTATED 1 6 0 0
CCDC153 WILD-TYPE 203 131 47 3
'CCDC153 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.61

Table S2452.  Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCDC153 MUTATED 1 4 0 1 1
CCDC153 WILD-TYPE 38 92 44 87 79
'CCDC153 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.58

Table S2453.  Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCDC153 MUTATED 1 3 1 1 0
CCDC153 WILD-TYPE 25 76 72 81 58
'CCDC153 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 0.97

Table S2454.  Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCDC153 MUTATED 2 1 2 1
CCDC153 WILD-TYPE 125 50 69 68
'CCDC153 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S2455.  Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCDC153 MUTATED 0 1 3 0 2
CCDC153 WILD-TYPE 84 84 82 69 45
'CCDC153 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S2456.  Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCDC153 MUTATED 0 2 1 3
CCDC153 WILD-TYPE 95 72 120 77
'CCDC153 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.76

Table S2457.  Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCDC153 MUTATED 1 2 2 1 1 0
CCDC153 WILD-TYPE 51 62 70 103 39 59
'CCDC153 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 0.83

Table S2458.  Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCDC153 MUTATED 4 2 1
CCDC153 WILD-TYPE 213 73 98
'CCDC153 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00037 (Fisher's exact test), Q value = 0.0087

Table S2459.  Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCDC153 MUTATED 0 1 6
CCDC153 WILD-TYPE 121 107 66

Figure S1105.  Get High-res Image Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC153 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S2460.  Gene #246: 'CCDC153 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCDC153 MUTATED 1 1 2 0 3
CCDC153 WILD-TYPE 87 65 43 55 44
'SF3B3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.7

Table S2461.  Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SF3B3 MUTATED 10 9 1 0
SF3B3 WILD-TYPE 194 128 46 3
'SF3B3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S2462.  Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SF3B3 MUTATED 4 7 1 5 0
SF3B3 WILD-TYPE 35 89 43 83 80

Figure S1106.  Get High-res Image Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SF3B3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S2463.  Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SF3B3 MUTATED 1 6 6 1 3
SF3B3 WILD-TYPE 25 73 67 81 55
'SF3B3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S2464.  Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SF3B3 MUTATED 7 6 2 2
SF3B3 WILD-TYPE 120 45 69 67
'SF3B3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 0.94

Table S2465.  Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SF3B3 MUTATED 5 5 5 2 3
SF3B3 WILD-TYPE 79 80 80 67 44
'SF3B3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.517 (Fisher's exact test), Q value = 0.62

Table S2466.  Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SF3B3 MUTATED 5 3 5 7
SF3B3 WILD-TYPE 90 71 116 73
'SF3B3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.51

Table S2467.  Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SF3B3 MUTATED 5 2 4 5 0 4
SF3B3 WILD-TYPE 47 62 68 99 40 55
'SF3B3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S2468.  Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SF3B3 MUTATED 13 1 6
SF3B3 WILD-TYPE 204 74 93
'SF3B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S2469.  Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SF3B3 MUTATED 8 3 2
SF3B3 WILD-TYPE 113 105 70
'SF3B3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S2470.  Gene #247: 'SF3B3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SF3B3 MUTATED 5 0 1 3 4
SF3B3 WILD-TYPE 83 66 44 52 43
'MLL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00131 (Fisher's exact test), Q value = 0.018

Table S2471.  Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MLL3 MUTATED 18 30 3 1
MLL3 WILD-TYPE 186 107 44 2

Figure S1107.  Get High-res Image Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S2472.  Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MLL3 MUTATED 4 25 4 1 4
MLL3 WILD-TYPE 35 71 40 87 76

Figure S1108.  Get High-res Image Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MLL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0633 (Fisher's exact test), Q value = 0.17

Table S2473.  Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MLL3 MUTATED 5 14 11 4 9
MLL3 WILD-TYPE 21 65 62 78 49
'MLL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.1

Table S2474.  Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MLL3 MUTATED 15 14 8 6
MLL3 WILD-TYPE 112 37 63 63

Figure S1109.  Get High-res Image Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00942 (Fisher's exact test), Q value = 0.055

Table S2475.  Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MLL3 MUTATED 5 7 19 12 8
MLL3 WILD-TYPE 79 78 66 57 39

Figure S1110.  Get High-res Image Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.063

Table S2476.  Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MLL3 MUTATED 18 6 10 17
MLL3 WILD-TYPE 77 68 111 63

Figure S1111.  Get High-res Image Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00662 (Fisher's exact test), Q value = 0.045

Table S2477.  Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MLL3 MUTATED 12 12 14 8 3 3
MLL3 WILD-TYPE 40 52 58 96 37 56

Figure S1112.  Get High-res Image Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S2478.  Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MLL3 MUTATED 42 4 6
MLL3 WILD-TYPE 175 71 93

Figure S1113.  Get High-res Image Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.092

Table S2479.  Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MLL3 MUTATED 20 6 6
MLL3 WILD-TYPE 101 102 66

Figure S1114.  Get High-res Image Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MLL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.006

Table S2480.  Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MLL3 MUTATED 15 1 2 3 11
MLL3 WILD-TYPE 73 65 43 52 36

Figure S1115.  Get High-res Image Gene #248: 'MLL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S2481.  Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CA2 MUTATED 1 4 2 0
CA2 WILD-TYPE 203 133 45 3
'CA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00968 (Fisher's exact test), Q value = 0.056

Table S2482.  Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CA2 MUTATED 1 6 0 0 0
CA2 WILD-TYPE 38 90 44 88 80

Figure S1116.  Get High-res Image Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.09

Table S2483.  Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CA2 MUTATED 0 0 4 0 3
CA2 WILD-TYPE 26 79 69 82 55

Figure S1117.  Get High-res Image Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00428 (Fisher's exact test), Q value = 0.035

Table S2484.  Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CA2 MUTATED 1 5 0 1
CA2 WILD-TYPE 126 46 71 68

Figure S1118.  Get High-res Image Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.4

Table S2485.  Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CA2 MUTATED 0 1 3 1 2
CA2 WILD-TYPE 84 84 82 68 45
'CA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.057

Table S2486.  Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CA2 MUTATED 1 1 0 5
CA2 WILD-TYPE 94 73 121 75

Figure S1119.  Get High-res Image Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.6

Table S2487.  Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CA2 MUTATED 2 0 2 2 1 0
CA2 WILD-TYPE 50 64 70 102 39 59
'CA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S2488.  Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CA2 MUTATED 6 1 0
CA2 WILD-TYPE 211 74 99
'CA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S2489.  Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CA2 MUTATED 4 1 2
CA2 WILD-TYPE 117 107 70
'CA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00468 (Fisher's exact test), Q value = 0.037

Table S2490.  Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CA2 MUTATED 1 1 0 0 5
CA2 WILD-TYPE 87 65 45 55 42

Figure S1120.  Get High-res Image Gene #249: 'CA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CNBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.39

Table S2491.  Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CNBD1 MUTATED 13 5 0 0
CNBD1 WILD-TYPE 191 132 47 3
'CNBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0108 (Fisher's exact test), Q value = 0.059

Table S2492.  Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CNBD1 MUTATED 1 9 0 5 0
CNBD1 WILD-TYPE 38 87 44 83 80

Figure S1121.  Get High-res Image Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S2493.  Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CNBD1 MUTATED 2 2 5 2 5
CNBD1 WILD-TYPE 24 77 68 80 53
'CNBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.69

Table S2494.  Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CNBD1 MUTATED 7 4 2 3
CNBD1 WILD-TYPE 120 47 69 66
'CNBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S2495.  Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CNBD1 MUTATED 8 1 6 0 3
CNBD1 WILD-TYPE 76 84 79 69 44

Figure S1122.  Get High-res Image Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CNBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.31

Table S2496.  Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CNBD1 MUTATED 2 2 10 4
CNBD1 WILD-TYPE 93 72 111 76
'CNBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00774 (Fisher's exact test), Q value = 0.049

Table S2497.  Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CNBD1 MUTATED 5 1 2 1 2 7
CNBD1 WILD-TYPE 47 63 70 103 38 52

Figure S1123.  Get High-res Image Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S2498.  Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CNBD1 MUTATED 8 2 8
CNBD1 WILD-TYPE 209 73 91
'CNBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S2499.  Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CNBD1 MUTATED 8 2 4
CNBD1 WILD-TYPE 113 106 68
'CNBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 0.11

Table S2500.  Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CNBD1 MUTATED 4 0 2 2 6
CNBD1 WILD-TYPE 84 66 43 53 41

Figure S1124.  Get High-res Image Gene #250: 'CNBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DNAH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S2501.  Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DNAH7 MUTATED 17 26 9 0
DNAH7 WILD-TYPE 187 111 38 3

Figure S1125.  Get High-res Image Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S2502.  Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DNAH7 MUTATED 4 19 5 8 6
DNAH7 WILD-TYPE 35 77 39 80 74
'DNAH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.62

Table S2503.  Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DNAH7 MUTATED 6 12 10 8 8
DNAH7 WILD-TYPE 20 67 63 74 50
'DNAH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S2504.  Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DNAH7 MUTATED 18 12 8 6
DNAH7 WILD-TYPE 109 39 63 63
'DNAH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00399 (Fisher's exact test), Q value = 0.034

Table S2505.  Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DNAH7 MUTATED 7 6 20 6 10
DNAH7 WILD-TYPE 77 79 65 63 37

Figure S1126.  Get High-res Image Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DNAH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00267 (Fisher's exact test), Q value = 0.027

Table S2506.  Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DNAH7 MUTATED 12 6 10 21
DNAH7 WILD-TYPE 83 68 111 59

Figure S1127.  Get High-res Image Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0018 (Fisher's exact test), Q value = 0.022

Table S2507.  Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DNAH7 MUTATED 13 16 8 9 2 4
DNAH7 WILD-TYPE 39 48 64 95 38 55

Figure S1128.  Get High-res Image Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00644 (Fisher's exact test), Q value = 0.044

Table S2508.  Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DNAH7 MUTATED 39 4 9
DNAH7 WILD-TYPE 178 71 90

Figure S1129.  Get High-res Image Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DNAH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S2509.  Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DNAH7 MUTATED 18 8 11
DNAH7 WILD-TYPE 103 100 61
'DNAH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.005

Table S2510.  Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DNAH7 MUTATED 12 2 7 2 14
DNAH7 WILD-TYPE 76 64 38 53 33

Figure S1130.  Get High-res Image Gene #251: 'DNAH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ASB11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00093 (Fisher's exact test), Q value = 0.015

Table S2511.  Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ASB11 MUTATED 0 9 0 0
ASB11 WILD-TYPE 204 128 47 3

Figure S1131.  Get High-res Image Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ASB11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.16

Table S2512.  Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ASB11 MUTATED 3 4 1 0 1
ASB11 WILD-TYPE 36 92 43 88 79
'ASB11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.74

Table S2513.  Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ASB11 MUTATED 1 3 2 1 3
ASB11 WILD-TYPE 25 76 71 81 55
'ASB11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.066

Table S2514.  Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ASB11 MUTATED 2 5 3 0
ASB11 WILD-TYPE 125 46 68 69

Figure S1132.  Get High-res Image Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ASB11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 0.12

Table S2515.  Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ASB11 MUTATED 0 1 5 1 3
ASB11 WILD-TYPE 84 84 80 68 44

Figure S1133.  Get High-res Image Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ASB11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.13

Table S2516.  Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ASB11 MUTATED 2 1 1 6
ASB11 WILD-TYPE 93 73 120 74

Figure S1134.  Get High-res Image Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ASB11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00161 (Fisher's exact test), Q value = 0.02

Table S2517.  Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ASB11 MUTATED 3 6 0 1 0 0
ASB11 WILD-TYPE 49 58 72 103 40 59

Figure S1135.  Get High-res Image Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ASB11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0867 (Fisher's exact test), Q value = 0.2

Table S2518.  Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ASB11 MUTATED 9 0 1
ASB11 WILD-TYPE 208 75 98
'ASB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.083

Table S2519.  Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ASB11 MUTATED 4 0 5
ASB11 WILD-TYPE 117 108 67

Figure S1136.  Get High-res Image Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ASB11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S2520.  Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ASB11 MUTATED 2 0 4 0 3
ASB11 WILD-TYPE 86 66 41 55 44

Figure S1137.  Get High-res Image Gene #252: 'ASB11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00319 (Fisher's exact test), Q value = 0.03

Table S2521.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDC14A MUTATED 2 12 1 0
CDC14A WILD-TYPE 202 125 46 3

Figure S1138.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDC14A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00674 (Fisher's exact test), Q value = 0.045

Table S2522.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDC14A MUTATED 0 8 2 0 1
CDC14A WILD-TYPE 39 88 42 88 79

Figure S1139.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDC14A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.15

Table S2523.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDC14A MUTATED 1 2 6 0 3
CDC14A WILD-TYPE 25 77 67 82 55
'CDC14A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0014 (Fisher's exact test), Q value = 0.019

Table S2524.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDC14A MUTATED 4 7 1 0
CDC14A WILD-TYPE 123 44 70 69

Figure S1140.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00344 (Fisher's exact test), Q value = 0.032

Table S2525.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDC14A MUTATED 0 2 7 1 5
CDC14A WILD-TYPE 84 83 78 68 42

Figure S1141.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDC14A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0046

Table S2526.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDC14A MUTATED 1 1 2 11
CDC14A WILD-TYPE 94 73 119 69

Figure S1142.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S2527.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDC14A MUTATED 7 7 1 0 0 0
CDC14A WILD-TYPE 45 57 71 104 40 59

Figure S1143.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00074 (Fisher's exact test), Q value = 0.013

Table S2528.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDC14A MUTATED 15 0 0
CDC14A WILD-TYPE 202 75 99

Figure S1144.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.083

Table S2529.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDC14A MUTATED 7 0 3
CDC14A WILD-TYPE 114 108 69

Figure S1145.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDC14A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.066

Table S2530.  Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDC14A MUTATED 3 0 2 0 5
CDC14A WILD-TYPE 85 66 43 55 42

Figure S1146.  Get High-res Image Gene #253: 'CDC14A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NHLRC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00493 (Fisher's exact test), Q value = 0.038

Table S2531.  Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NHLRC1 MUTATED 1 10 1 0
NHLRC1 WILD-TYPE 203 127 46 3

Figure S1147.  Get High-res Image Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NHLRC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S2532.  Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NHLRC1 MUTATED 1 5 1 1 0
NHLRC1 WILD-TYPE 38 91 43 87 80
'NHLRC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.5

Table S2533.  Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NHLRC1 MUTATED 0 3 5 1 2
NHLRC1 WILD-TYPE 26 76 68 81 56
'NHLRC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S2534.  Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NHLRC1 MUTATED 4 4 2 1
NHLRC1 WILD-TYPE 123 47 69 68
'NHLRC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.15

Table S2535.  Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NHLRC1 MUTATED 1 2 7 1 0
NHLRC1 WILD-TYPE 83 83 78 68 47
'NHLRC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S2536.  Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NHLRC1 MUTATED 2 3 1 5
NHLRC1 WILD-TYPE 93 71 120 75
'NHLRC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.12

Table S2537.  Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NHLRC1 MUTATED 2 6 0 3 0 1
NHLRC1 WILD-TYPE 50 58 72 101 40 58

Figure S1148.  Get High-res Image Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NHLRC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 0.95

Table S2538.  Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NHLRC1 MUTATED 8 2 2
NHLRC1 WILD-TYPE 209 73 97
'NHLRC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.55

Table S2539.  Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NHLRC1 MUTATED 3 1 3
NHLRC1 WILD-TYPE 118 107 69
'NHLRC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 0.95

Table S2540.  Gene #254: 'NHLRC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NHLRC1 MUTATED 2 1 2 1 1
NHLRC1 WILD-TYPE 86 65 43 54 46
'ZC3H18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.096

Table S2541.  Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZC3H18 MUTATED 4 12 3 0
ZC3H18 WILD-TYPE 200 125 44 3

Figure S1149.  Get High-res Image Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.35

Table S2542.  Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZC3H18 MUTATED 1 8 2 3 1
ZC3H18 WILD-TYPE 38 88 42 85 79
'ZC3H18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00943 (Fisher's exact test), Q value = 0.055

Table S2543.  Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZC3H18 MUTATED 0 8 2 0 4
ZC3H18 WILD-TYPE 26 71 71 82 54

Figure S1150.  Get High-res Image Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZC3H18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 0.17

Table S2544.  Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZC3H18 MUTATED 3 4 6 1
ZC3H18 WILD-TYPE 124 47 65 68
'ZC3H18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 0.68

Table S2545.  Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZC3H18 MUTATED 2 3 6 4 3
ZC3H18 WILD-TYPE 82 82 79 65 44
'ZC3H18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S2546.  Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZC3H18 MUTATED 6 3 2 7
ZC3H18 WILD-TYPE 89 71 119 73
'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.068

Table S2547.  Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZC3H18 MUTATED 4 8 4 2 2 0
ZC3H18 WILD-TYPE 48 56 68 102 38 59

Figure S1151.  Get High-res Image Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S2548.  Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZC3H18 MUTATED 15 1 4
ZC3H18 WILD-TYPE 202 74 95
'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.051 (Fisher's exact test), Q value = 0.15

Table S2549.  Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZC3H18 MUTATED 5 2 7
ZC3H18 WILD-TYPE 116 106 65
'ZC3H18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0541 (Fisher's exact test), Q value = 0.15

Table S2550.  Gene #255: 'ZC3H18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZC3H18 MUTATED 3 1 3 1 6
ZC3H18 WILD-TYPE 85 65 42 54 41
'RGS9BP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S2551.  Gene #256: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RGS9BP MUTATED 2 6 0 0
RGS9BP WILD-TYPE 202 131 47 3
'RGS9BP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S2552.  Gene #256: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RGS9BP MUTATED 0 5 0 2 0
RGS9BP WILD-TYPE 39 91 44 86 80
'RGS9BP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.68

Table S2553.  Gene #256: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RGS9BP MUTATED 0 1 3 2 0
RGS9BP WILD-TYPE 26 78 70 80 58
'RGS9BP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 0.93

Table S2554.  Gene #256: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RGS9BP MUTATED 2 1 1 2
RGS9BP WILD-TYPE 125 50 70 67
'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 0.96

Table S2555.  Gene #256: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RGS9BP MUTATED 1 2 3 1 1
RGS9BP WILD-TYPE 83 83 82 68 46
'RGS9BP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S2556.  Gene #256: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RGS9BP MUTATED 1 4 1 2
RGS9BP WILD-TYPE 94 70 120 78
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.49

Table S2557.  Gene #256: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RGS9BP MUTATED 3 1 0 2 1 1
RGS9BP WILD-TYPE 49 63 72 102 39 58
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.892 (Fisher's exact test), Q value = 0.93

Table S2558.  Gene #256: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RGS9BP MUTATED 4 2 2
RGS9BP WILD-TYPE 213 73 97
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2559.  Gene #256: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RGS9BP MUTATED 3 2 1
RGS9BP WILD-TYPE 118 106 71
'RGS9BP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S2560.  Gene #256: 'RGS9BP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RGS9BP MUTATED 1 1 0 1 3
RGS9BP WILD-TYPE 87 65 45 54 44
'GLYR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0052 (Fisher's exact test), Q value = 0.039

Table S2561.  Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GLYR1 MUTATED 3 12 0 0
GLYR1 WILD-TYPE 201 125 47 3

Figure S1152.  Get High-res Image Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLYR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S2562.  Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GLYR1 MUTATED 2 7 1 1 1
GLYR1 WILD-TYPE 37 89 43 87 79
'GLYR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.12

Table S2563.  Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GLYR1 MUTATED 0 7 3 0 3
GLYR1 WILD-TYPE 26 72 70 82 55

Figure S1153.  Get High-res Image Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GLYR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00221 (Fisher's exact test), Q value = 0.024

Table S2564.  Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GLYR1 MUTATED 1 6 5 1
GLYR1 WILD-TYPE 126 45 66 68

Figure S1154.  Get High-res Image Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GLYR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S2565.  Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GLYR1 MUTATED 0 3 6 3 2
GLYR1 WILD-TYPE 84 82 79 66 45
'GLYR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00485 (Fisher's exact test), Q value = 0.038

Table S2566.  Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GLYR1 MUTATED 4 3 0 7
GLYR1 WILD-TYPE 91 71 121 73

Figure S1155.  Get High-res Image Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GLYR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S2567.  Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GLYR1 MUTATED 4 5 3 1 1 1
GLYR1 WILD-TYPE 48 59 69 103 39 58
'GLYR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0772 (Fisher's exact test), Q value = 0.19

Table S2568.  Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GLYR1 MUTATED 12 0 3
GLYR1 WILD-TYPE 205 75 96
'GLYR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 0.58

Table S2569.  Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GLYR1 MUTATED 6 2 2
GLYR1 WILD-TYPE 115 106 70
'GLYR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.13

Table S2570.  Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GLYR1 MUTATED 3 0 1 1 5
GLYR1 WILD-TYPE 85 66 44 54 42

Figure S1156.  Get High-res Image Gene #257: 'GLYR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FILIP1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.086

Table S2571.  Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FILIP1L MUTATED 5 14 2 0
FILIP1L WILD-TYPE 199 123 45 3

Figure S1157.  Get High-res Image Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FILIP1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S2572.  Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FILIP1L MUTATED 3 9 2 2 0
FILIP1L WILD-TYPE 36 87 42 86 80

Figure S1158.  Get High-res Image Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FILIP1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S2573.  Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FILIP1L MUTATED 2 6 6 0 5
FILIP1L WILD-TYPE 24 73 67 82 53

Figure S1159.  Get High-res Image Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FILIP1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0044

Table S2574.  Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FILIP1L MUTATED 4 11 3 1
FILIP1L WILD-TYPE 123 40 68 68

Figure S1160.  Get High-res Image Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FILIP1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 0.18

Table S2575.  Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FILIP1L MUTATED 3 4 10 1 2
FILIP1L WILD-TYPE 81 81 75 68 45
'FILIP1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.18

Table S2576.  Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FILIP1L MUTATED 7 2 3 8
FILIP1L WILD-TYPE 88 72 118 72
'FILIP1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S2577.  Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FILIP1L MUTATED 1 8 3 4 2 3
FILIP1L WILD-TYPE 51 56 69 100 38 56
'FILIP1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S2578.  Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FILIP1L MUTATED 16 1 4
FILIP1L WILD-TYPE 201 74 95
'FILIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.7

Table S2579.  Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FILIP1L MUTATED 7 4 5
FILIP1L WILD-TYPE 114 104 67
'FILIP1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S2580.  Gene #258: 'FILIP1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FILIP1L MUTATED 8 1 2 1 4
FILIP1L WILD-TYPE 80 65 43 54 43
'USP26 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S2581.  Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
USP26 MUTATED 4 18 0 0
USP26 WILD-TYPE 200 119 47 3

Figure S1161.  Get High-res Image Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'USP26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.16

Table S2582.  Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
USP26 MUTATED 1 10 3 3 1
USP26 WILD-TYPE 38 86 41 85 79
'USP26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.59

Table S2583.  Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
USP26 MUTATED 0 7 4 3 4
USP26 WILD-TYPE 26 72 69 79 54
'USP26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S2584.  Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
USP26 MUTATED 5 5 6 2
USP26 WILD-TYPE 122 46 65 67
'USP26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.074

Table S2585.  Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
USP26 MUTATED 3 6 10 1 0
USP26 WILD-TYPE 81 79 75 68 47

Figure S1162.  Get High-res Image Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0725 (Fisher's exact test), Q value = 0.18

Table S2586.  Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
USP26 MUTATED 4 4 3 9
USP26 WILD-TYPE 91 70 118 71
'USP26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.6

Table S2587.  Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
USP26 MUTATED 4 5 3 8 1 1
USP26 WILD-TYPE 48 59 69 96 39 58
'USP26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.695 (Fisher's exact test), Q value = 0.77

Table S2588.  Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
USP26 MUTATED 13 5 4
USP26 WILD-TYPE 204 70 95
'USP26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S2589.  Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
USP26 MUTATED 5 6 6
USP26 WILD-TYPE 116 102 66
'USP26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 0.75

Table S2590.  Gene #259: 'USP26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
USP26 MUTATED 5 5 3 1 3
USP26 WILD-TYPE 83 61 42 54 44
'VPS13B MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S2591.  Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
VPS13B MUTATED 13 32 4 0
VPS13B WILD-TYPE 191 105 43 3

Figure S1163.  Get High-res Image Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPS13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00645 (Fisher's exact test), Q value = 0.044

Table S2592.  Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
VPS13B MUTATED 4 21 5 5 5
VPS13B WILD-TYPE 35 75 39 83 75

Figure S1164.  Get High-res Image Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'VPS13B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S2593.  Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
VPS13B MUTATED 3 14 7 5 10
VPS13B WILD-TYPE 23 65 66 77 48
'VPS13B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00953 (Fisher's exact test), Q value = 0.055

Table S2594.  Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
VPS13B MUTATED 11 14 8 6
VPS13B WILD-TYPE 116 37 63 63

Figure S1165.  Get High-res Image Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'VPS13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.0092

Table S2595.  Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
VPS13B MUTATED 6 5 23 9 4
VPS13B WILD-TYPE 78 80 62 60 43

Figure S1166.  Get High-res Image Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'VPS13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 0.1

Table S2596.  Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
VPS13B MUTATED 14 7 9 17
VPS13B WILD-TYPE 81 67 112 63

Figure S1167.  Get High-res Image Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VPS13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 0.032

Table S2597.  Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
VPS13B MUTATED 10 16 7 7 6 3
VPS13B WILD-TYPE 42 48 65 97 34 56

Figure S1168.  Get High-res Image Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VPS13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 0.15

Table S2598.  Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
VPS13B MUTATED 35 5 9
VPS13B WILD-TYPE 182 70 90
'VPS13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S2599.  Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
VPS13B MUTATED 16 7 11
VPS13B WILD-TYPE 105 101 61
'VPS13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00643 (Fisher's exact test), Q value = 0.044

Table S2600.  Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
VPS13B MUTATED 13 1 7 4 9
VPS13B WILD-TYPE 75 65 38 51 38

Figure S1169.  Get High-res Image Gene #260: 'VPS13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0072

Table S2601.  Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RCOR3 MUTATED 1 12 0 0
RCOR3 WILD-TYPE 203 125 47 3

Figure S1170.  Get High-res Image Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RCOR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00259 (Fisher's exact test), Q value = 0.027

Table S2602.  Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RCOR3 MUTATED 2 8 2 0 0
RCOR3 WILD-TYPE 37 88 42 88 80

Figure S1171.  Get High-res Image Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RCOR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0783 (Fisher's exact test), Q value = 0.19

Table S2603.  Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RCOR3 MUTATED 1 4 3 0 5
RCOR3 WILD-TYPE 25 75 70 82 53
'RCOR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S2604.  Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RCOR3 MUTATED 1 9 2 1
RCOR3 WILD-TYPE 126 42 69 68

Figure S1172.  Get High-res Image Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S2605.  Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RCOR3 MUTATED 1 2 7 1 1
RCOR3 WILD-TYPE 83 83 78 68 46
'RCOR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0225 (Fisher's exact test), Q value = 0.09

Table S2606.  Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RCOR3 MUTATED 2 2 1 7
RCOR3 WILD-TYPE 93 72 120 73

Figure S1173.  Get High-res Image Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.2

Table S2607.  Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RCOR3 MUTATED 4 5 1 3 1 0
RCOR3 WILD-TYPE 48 59 71 101 39 59
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 0.11

Table S2608.  Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RCOR3 MUTATED 12 2 0
RCOR3 WILD-TYPE 205 73 99

Figure S1174.  Get High-res Image Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.46

Table S2609.  Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RCOR3 MUTATED 6 2 4
RCOR3 WILD-TYPE 115 106 68
'RCOR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S2610.  Gene #261: 'RCOR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RCOR3 MUTATED 4 2 2 0 4
RCOR3 WILD-TYPE 84 64 43 55 43
'CASD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00752 (Fisher's exact test), Q value = 0.048

Table S2611.  Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CASD1 MUTATED 1 8 3 0
CASD1 WILD-TYPE 203 129 44 3

Figure S1175.  Get High-res Image Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CASD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0062

Table S2612.  Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CASD1 MUTATED 0 9 0 0 0
CASD1 WILD-TYPE 39 87 44 88 80

Figure S1176.  Get High-res Image Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CASD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S2613.  Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CASD1 MUTATED 0 4 4 0 3
CASD1 WILD-TYPE 26 75 69 82 55
'CASD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.013

Table S2614.  Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CASD1 MUTATED 1 6 4 0
CASD1 WILD-TYPE 126 45 67 69

Figure S1177.  Get High-res Image Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CASD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.016

Table S2615.  Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CASD1 MUTATED 0 0 6 1 4
CASD1 WILD-TYPE 84 85 79 68 43

Figure S1178.  Get High-res Image Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CASD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00605 (Fisher's exact test), Q value = 0.043

Table S2616.  Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CASD1 MUTATED 4 1 0 6
CASD1 WILD-TYPE 91 73 121 74

Figure S1179.  Get High-res Image Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.11

Table S2617.  Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CASD1 MUTATED 3 4 4 0 0 1
CASD1 WILD-TYPE 49 60 68 104 40 58

Figure S1180.  Get High-res Image Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S2618.  Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CASD1 MUTATED 10 0 2
CASD1 WILD-TYPE 207 75 97
'CASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00775 (Fisher's exact test), Q value = 0.049

Table S2619.  Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CASD1 MUTATED 2 0 5
CASD1 WILD-TYPE 119 108 67

Figure S1181.  Get High-res Image Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CASD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S2620.  Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CASD1 MUTATED 1 0 2 0 4
CASD1 WILD-TYPE 87 66 43 55 43

Figure S1182.  Get High-res Image Gene #262: 'CASD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CDC25C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.15

Table S2621.  Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDC25C MUTATED 2 8 1 0
CDC25C WILD-TYPE 202 129 46 3
'CDC25C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0087 (Fisher's exact test), Q value = 0.052

Table S2622.  Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDC25C MUTATED 3 5 2 0 0
CDC25C WILD-TYPE 36 91 42 88 80

Figure S1183.  Get High-res Image Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDC25C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S2623.  Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDC25C MUTATED 0 4 3 0 2
CDC25C WILD-TYPE 26 75 70 82 56
'CDC25C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.12

Table S2624.  Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDC25C MUTATED 2 4 3 0
CDC25C WILD-TYPE 125 47 68 69

Figure S1184.  Get High-res Image Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDC25C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.48

Table S2625.  Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDC25C MUTATED 1 4 4 1 0
CDC25C WILD-TYPE 83 81 81 68 47
'CDC25C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.11

Table S2626.  Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDC25C MUTATED 3 2 0 5
CDC25C WILD-TYPE 92 72 121 75

Figure S1185.  Get High-res Image Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC25C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.62

Table S2627.  Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDC25C MUTATED 2 2 2 5 0 0
CDC25C WILD-TYPE 50 62 70 99 40 59
'CDC25C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.6

Table S2628.  Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDC25C MUTATED 8 2 1
CDC25C WILD-TYPE 209 73 98
'CDC25C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.94

Table S2629.  Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDC25C MUTATED 4 2 2
CDC25C WILD-TYPE 117 106 70
'CDC25C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.907 (Fisher's exact test), Q value = 0.94

Table S2630.  Gene #263: 'CDC25C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDC25C MUTATED 3 1 1 1 2
CDC25C WILD-TYPE 85 65 44 54 45
'BCL9L MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S2631.  Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BCL9L MUTATED 5 19 1 1
BCL9L WILD-TYPE 199 118 46 2

Figure S1186.  Get High-res Image Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCL9L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00202 (Fisher's exact test), Q value = 0.023

Table S2632.  Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BCL9L MUTATED 3 14 2 2 1
BCL9L WILD-TYPE 36 82 42 86 79

Figure S1187.  Get High-res Image Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BCL9L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00155 (Fisher's exact test), Q value = 0.02

Table S2633.  Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BCL9L MUTATED 4 11 5 0 4
BCL9L WILD-TYPE 22 68 68 82 54

Figure S1188.  Get High-res Image Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCL9L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S2634.  Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BCL9L MUTATED 7 12 5 0
BCL9L WILD-TYPE 120 39 66 69

Figure S1189.  Get High-res Image Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00603 (Fisher's exact test), Q value = 0.043

Table S2635.  Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BCL9L MUTATED 1 4 12 2 4
BCL9L WILD-TYPE 83 81 73 67 43

Figure S1190.  Get High-res Image Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BCL9L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00044 (Fisher's exact test), Q value = 0.0097

Table S2636.  Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BCL9L MUTATED 3 2 4 14
BCL9L WILD-TYPE 92 72 117 66

Figure S1191.  Get High-res Image Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.16

Table S2637.  Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BCL9L MUTATED 6 8 6 4 1 1
BCL9L WILD-TYPE 46 56 66 100 39 58
'BCL9L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00817 (Fisher's exact test), Q value = 0.05

Table S2638.  Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BCL9L MUTATED 22 2 2
BCL9L WILD-TYPE 195 73 97

Figure S1192.  Get High-res Image Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0883 (Fisher's exact test), Q value = 0.2

Table S2639.  Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BCL9L MUTATED 5 6 9
BCL9L WILD-TYPE 116 102 63
'BCL9L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S2640.  Gene #264: 'BCL9L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BCL9L MUTATED 9 2 3 1 5
BCL9L WILD-TYPE 79 64 42 54 42
'TNFSF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S2641.  Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TNFSF10 MUTATED 2 4 2 0
TNFSF10 WILD-TYPE 202 133 45 3
'TNFSF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.61

Table S2642.  Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TNFSF10 MUTATED 0 3 1 1 0
TNFSF10 WILD-TYPE 39 93 43 87 80
'TNFSF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.32

Table S2643.  Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TNFSF10 MUTATED 0 4 1 0 2
TNFSF10 WILD-TYPE 26 75 72 82 56
'TNFSF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.073

Table S2644.  Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TNFSF10 MUTATED 1 4 2 0
TNFSF10 WILD-TYPE 126 47 69 69

Figure S1193.  Get High-res Image Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TNFSF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.058

Table S2645.  Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TNFSF10 MUTATED 0 0 4 0 2
TNFSF10 WILD-TYPE 84 85 81 69 45

Figure S1194.  Get High-res Image Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNFSF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.075

Table S2646.  Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TNFSF10 MUTATED 2 0 0 4
TNFSF10 WILD-TYPE 93 74 121 76

Figure S1195.  Get High-res Image Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNFSF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.11

Table S2647.  Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TNFSF10 MUTATED 2 4 2 0 0 0
TNFSF10 WILD-TYPE 50 60 70 104 40 59

Figure S1196.  Get High-res Image Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TNFSF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S2648.  Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TNFSF10 MUTATED 6 0 2
TNFSF10 WILD-TYPE 211 75 97
'TNFSF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S2649.  Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TNFSF10 MUTATED 2 0 2
TNFSF10 WILD-TYPE 119 108 70
'TNFSF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00791 (Fisher's exact test), Q value = 0.05

Table S2650.  Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TNFSF10 MUTATED 0 0 1 0 3
TNFSF10 WILD-TYPE 88 66 44 55 44

Figure S1197.  Get High-res Image Gene #265: 'TNFSF10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PIK3R3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S2651.  Gene #266: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PIK3R3 MUTATED 2 4 2 0
PIK3R3 WILD-TYPE 202 133 45 3
'PIK3R3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.17

Table S2652.  Gene #266: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PIK3R3 MUTATED 2 3 1 0 0
PIK3R3 WILD-TYPE 37 93 43 88 80
'PIK3R3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S2653.  Gene #266: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PIK3R3 MUTATED 0 2 1 2 2
PIK3R3 WILD-TYPE 26 77 72 80 56
'PIK3R3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2654.  Gene #266: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PIK3R3 MUTATED 3 1 2 1
PIK3R3 WILD-TYPE 124 50 69 68
'PIK3R3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 0.19

Table S2655.  Gene #266: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PIK3R3 MUTATED 0 2 5 1 0
PIK3R3 WILD-TYPE 84 83 80 68 47
'PIK3R3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.48

Table S2656.  Gene #266: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PIK3R3 MUTATED 1 1 2 4
PIK3R3 WILD-TYPE 94 73 119 76
'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.66

Table S2657.  Gene #266: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PIK3R3 MUTATED 2 2 0 3 0 1
PIK3R3 WILD-TYPE 50 62 72 101 40 58
'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S2658.  Gene #266: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PIK3R3 MUTATED 7 1 0
PIK3R3 WILD-TYPE 210 74 99
'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2659.  Gene #266: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PIK3R3 MUTATED 2 2 1
PIK3R3 WILD-TYPE 119 106 71
'PIK3R3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 0.86

Table S2660.  Gene #266: 'PIK3R3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PIK3R3 MUTATED 2 0 1 1 1
PIK3R3 WILD-TYPE 86 66 44 54 46
'ZNF124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S2661.  Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF124 MUTATED 2 7 1 0
ZNF124 WILD-TYPE 202 130 46 3
'ZNF124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.6

Table S2662.  Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF124 MUTATED 1 4 0 1 1
ZNF124 WILD-TYPE 38 92 44 87 79
'ZNF124 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S2663.  Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF124 MUTATED 2 4 1 1 1
ZNF124 WILD-TYPE 24 75 72 81 57
'ZNF124 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S2664.  Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF124 MUTATED 2 4 2 1
ZNF124 WILD-TYPE 125 47 69 68
'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 0.017

Table S2665.  Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF124 MUTATED 0 0 7 2 0
ZNF124 WILD-TYPE 84 85 78 67 47

Figure S1198.  Get High-res Image Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S2666.  Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF124 MUTATED 2 1 1 5
ZNF124 WILD-TYPE 93 73 120 75
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0987 (Fisher's exact test), Q value = 0.21

Table S2667.  Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF124 MUTATED 0 5 2 2 1 0
ZNF124 WILD-TYPE 52 59 70 102 39 59
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 0.2

Table S2668.  Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF124 MUTATED 9 0 1
ZNF124 WILD-TYPE 208 75 98
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S2669.  Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF124 MUTATED 2 2 2
ZNF124 WILD-TYPE 119 106 70
'ZNF124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.64

Table S2670.  Gene #267: 'ZNF124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF124 MUTATED 2 0 2 1 1
ZNF124 WILD-TYPE 86 66 43 54 46
'KNTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.59

Table S2671.  Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KNTC1 MUTATED 8 10 2 0
KNTC1 WILD-TYPE 196 127 45 3
'KNTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.56

Table S2672.  Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KNTC1 MUTATED 1 7 1 2 2
KNTC1 WILD-TYPE 38 89 43 86 78
'KNTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0432 (Fisher's exact test), Q value = 0.13

Table S2673.  Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KNTC1 MUTATED 3 8 1 2 4
KNTC1 WILD-TYPE 23 71 72 80 54

Figure S1199.  Get High-res Image Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KNTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.076

Table S2674.  Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KNTC1 MUTATED 4 8 4 2
KNTC1 WILD-TYPE 123 43 67 67

Figure S1200.  Get High-res Image Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KNTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S2675.  Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KNTC1 MUTATED 1 1 14 3 1
KNTC1 WILD-TYPE 83 84 71 66 46

Figure S1201.  Get High-res Image Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KNTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.11

Table S2676.  Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KNTC1 MUTATED 5 4 2 9
KNTC1 WILD-TYPE 90 70 119 71

Figure S1202.  Get High-res Image Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KNTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.15

Table S2677.  Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KNTC1 MUTATED 2 8 5 2 2 1
KNTC1 WILD-TYPE 50 56 67 102 38 58
'KNTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0945 (Fisher's exact test), Q value = 0.21

Table S2678.  Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KNTC1 MUTATED 16 2 2
KNTC1 WILD-TYPE 201 73 97
'KNTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S2679.  Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KNTC1 MUTATED 6 1 4
KNTC1 WILD-TYPE 115 107 68
'KNTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.33

Table S2680.  Gene #268: 'KNTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KNTC1 MUTATED 3 0 3 2 3
KNTC1 WILD-TYPE 85 66 42 53 44
'GAS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00377 (Fisher's exact test), Q value = 0.033

Table S2681.  Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GAS6 MUTATED 2 12 2 0
GAS6 WILD-TYPE 202 125 45 3

Figure S1203.  Get High-res Image Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GAS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00566 (Fisher's exact test), Q value = 0.041

Table S2682.  Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GAS6 MUTATED 1 9 1 0 1
GAS6 WILD-TYPE 38 87 43 88 79

Figure S1204.  Get High-res Image Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GAS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.8

Table S2683.  Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GAS6 MUTATED 2 4 4 2 3
GAS6 WILD-TYPE 24 75 69 80 55
'GAS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S2684.  Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GAS6 MUTATED 5 6 2 2
GAS6 WILD-TYPE 122 45 69 67
'GAS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.17

Table S2685.  Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GAS6 MUTATED 0 2 6 4 1
GAS6 WILD-TYPE 84 83 79 65 46
'GAS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S2686.  Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GAS6 MUTATED 6 2 1 4
GAS6 WILD-TYPE 89 72 120 76
'GAS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00954 (Fisher's exact test), Q value = 0.055

Table S2687.  Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GAS6 MUTATED 4 7 1 2 2 0
GAS6 WILD-TYPE 48 57 71 102 38 59

Figure S1205.  Get High-res Image Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GAS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S2688.  Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GAS6 MUTATED 13 1 2
GAS6 WILD-TYPE 204 74 97
'GAS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S2689.  Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GAS6 MUTATED 5 2 5
GAS6 WILD-TYPE 116 106 67
'GAS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.13

Table S2690.  Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GAS6 MUTATED 3 1 3 0 5
GAS6 WILD-TYPE 85 65 42 55 42

Figure S1206.  Get High-res Image Gene #269: 'GAS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HCFC1R1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S2691.  Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HCFC1R1 MUTATED 0 6 0 0
HCFC1R1 WILD-TYPE 204 131 47 3

Figure S1207.  Get High-res Image Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HCFC1R1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.17

Table S2692.  Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HCFC1R1 MUTATED 0 3 2 0 0
HCFC1R1 WILD-TYPE 39 93 42 88 80
'HCFC1R1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.062

Table S2693.  Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HCFC1R1 MUTATED 0 0 5 1 0
HCFC1R1 WILD-TYPE 84 85 80 68 47

Figure S1208.  Get High-res Image Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HCFC1R1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S2694.  Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HCFC1R1 MUTATED 1 1 0 4
HCFC1R1 WILD-TYPE 94 73 121 76

Figure S1209.  Get High-res Image Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S2695.  Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HCFC1R1 MUTATED 2 2 2 0 0 0
HCFC1R1 WILD-TYPE 50 62 70 104 40 59
'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.65

Table S2696.  Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HCFC1R1 MUTATED 5 0 1
HCFC1R1 WILD-TYPE 212 75 98
'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.57

Table S2697.  Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HCFC1R1 MUTATED 2 0 1
HCFC1R1 WILD-TYPE 119 108 71
'HCFC1R1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S2698.  Gene #270: 'HCFC1R1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HCFC1R1 MUTATED 1 0 0 0 2
HCFC1R1 WILD-TYPE 87 66 45 55 45
'NCAPD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0094 (Fisher's exact test), Q value = 0.055

Table S2699.  Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NCAPD3 MUTATED 3 12 3 0
NCAPD3 WILD-TYPE 201 125 44 3

Figure S1210.  Get High-res Image Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NCAPD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.095

Table S2700.  Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NCAPD3 MUTATED 4 7 2 0 3
NCAPD3 WILD-TYPE 35 89 42 88 77

Figure S1211.  Get High-res Image Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NCAPD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 0.83

Table S2701.  Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NCAPD3 MUTATED 1 4 4 2 4
NCAPD3 WILD-TYPE 25 75 69 80 54
'NCAPD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.08

Table S2702.  Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NCAPD3 MUTATED 4 7 3 1
NCAPD3 WILD-TYPE 123 44 68 68

Figure S1212.  Get High-res Image Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NCAPD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S2703.  Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NCAPD3 MUTATED 1 3 8 4 3
NCAPD3 WILD-TYPE 83 82 77 65 44
'NCAPD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00523 (Fisher's exact test), Q value = 0.04

Table S2704.  Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NCAPD3 MUTATED 8 2 1 8
NCAPD3 WILD-TYPE 87 72 120 72

Figure S1213.  Get High-res Image Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.097

Table S2705.  Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NCAPD3 MUTATED 4 6 6 3 0 0
NCAPD3 WILD-TYPE 48 58 66 101 40 59

Figure S1214.  Get High-res Image Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00651 (Fisher's exact test), Q value = 0.045

Table S2706.  Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NCAPD3 MUTATED 16 3 0
NCAPD3 WILD-TYPE 201 72 99

Figure S1215.  Get High-res Image Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.61

Table S2707.  Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NCAPD3 MUTATED 7 3 4
NCAPD3 WILD-TYPE 114 105 68
'NCAPD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.14

Table S2708.  Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NCAPD3 MUTATED 3 3 2 0 6
NCAPD3 WILD-TYPE 85 63 43 55 41

Figure S1216.  Get High-res Image Gene #271: 'NCAPD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TAF1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.17

Table S2709.  Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TAF1L MUTATED 10 14 7 0
TAF1L WILD-TYPE 194 123 40 3
'TAF1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S2710.  Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TAF1L MUTATED 3 12 3 5 4
TAF1L WILD-TYPE 36 84 41 83 76
'TAF1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S2711.  Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TAF1L MUTATED 1 8 9 2 4
TAF1L WILD-TYPE 25 71 64 80 54
'TAF1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0949 (Fisher's exact test), Q value = 0.21

Table S2712.  Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TAF1L MUTATED 6 6 9 3
TAF1L WILD-TYPE 121 45 62 66
'TAF1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S2713.  Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TAF1L MUTATED 4 4 12 5 6
TAF1L WILD-TYPE 80 81 73 64 41
'TAF1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.74

Table S2714.  Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TAF1L MUTATED 10 5 8 8
TAF1L WILD-TYPE 85 69 113 72
'TAF1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.72

Table S2715.  Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TAF1L MUTATED 7 6 6 7 2 3
TAF1L WILD-TYPE 45 58 66 97 38 56
'TAF1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.063

Table S2716.  Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TAF1L MUTATED 25 2 4
TAF1L WILD-TYPE 192 73 95

Figure S1217.  Get High-res Image Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TAF1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.75

Table S2717.  Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TAF1L MUTATED 12 7 6
TAF1L WILD-TYPE 109 101 66
'TAF1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.33

Table S2718.  Gene #272: 'TAF1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TAF1L MUTATED 10 5 3 1 6
TAF1L WILD-TYPE 78 61 42 54 41
'LRRN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.42

Table S2719.  Gene #273: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LRRN2 MUTATED 18 15 1 0
LRRN2 WILD-TYPE 186 122 46 3
'LRRN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.57

Table S2720.  Gene #273: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LRRN2 MUTATED 6 10 5 5 7
LRRN2 WILD-TYPE 33 86 39 83 73
'LRRN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.537 (Fisher's exact test), Q value = 0.64

Table S2721.  Gene #273: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LRRN2 MUTATED 2 8 4 6 8
LRRN2 WILD-TYPE 24 71 69 76 50
'LRRN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 0.8

Table S2722.  Gene #273: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LRRN2 MUTATED 9 4 8 7
LRRN2 WILD-TYPE 118 47 63 62
'LRRN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.62

Table S2723.  Gene #273: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LRRN2 MUTATED 5 11 9 5 3
LRRN2 WILD-TYPE 79 74 76 64 44
'LRRN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.49

Table S2724.  Gene #273: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LRRN2 MUTATED 8 9 7 9
LRRN2 WILD-TYPE 87 65 114 71
'LRRN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S2725.  Gene #273: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LRRN2 MUTATED 5 3 7 15 1 3
LRRN2 WILD-TYPE 47 61 65 89 39 56
'LRRN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S2726.  Gene #273: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LRRN2 MUTATED 20 7 7
LRRN2 WILD-TYPE 197 68 92
'LRRN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.46

Table S2727.  Gene #273: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LRRN2 MUTATED 10 13 4
LRRN2 WILD-TYPE 111 95 68
'LRRN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.64

Table S2728.  Gene #273: 'LRRN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LRRN2 MUTATED 10 4 2 5 6
LRRN2 WILD-TYPE 78 62 43 50 41
'C17ORF57 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.1

Table S2729.  Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C17ORF57 MUTATED 2 9 1 0
C17ORF57 WILD-TYPE 202 128 46 3

Figure S1218.  Get High-res Image Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C17ORF57 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.1

Table S2730.  Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C17ORF57 MUTATED 2 6 0 0 1
C17ORF57 WILD-TYPE 37 90 44 88 79

Figure S1219.  Get High-res Image Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C17ORF57 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S2731.  Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C17ORF57 MUTATED 1 4 4 0 2
C17ORF57 WILD-TYPE 25 75 69 82 56
'C17ORF57 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00093 (Fisher's exact test), Q value = 0.015

Table S2732.  Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C17ORF57 MUTATED 3 7 1 0
C17ORF57 WILD-TYPE 124 44 70 69

Figure S1220.  Get High-res Image Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C17ORF57 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00369 (Fisher's exact test), Q value = 0.033

Table S2733.  Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C17ORF57 MUTATED 0 1 8 1 1
C17ORF57 WILD-TYPE 84 84 77 68 46

Figure S1221.  Get High-res Image Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C17ORF57 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00125 (Fisher's exact test), Q value = 0.018

Table S2734.  Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C17ORF57 MUTATED 1 1 1 8
C17ORF57 WILD-TYPE 94 73 120 72

Figure S1222.  Get High-res Image Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C17ORF57 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.011

Table S2735.  Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C17ORF57 MUTATED 6 4 2 0 0 0
C17ORF57 WILD-TYPE 46 60 70 104 40 59

Figure S1223.  Get High-res Image Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C17ORF57 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.12

Table S2736.  Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C17ORF57 MUTATED 11 0 1
C17ORF57 WILD-TYPE 206 75 98

Figure S1224.  Get High-res Image Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C17ORF57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S2737.  Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C17ORF57 MUTATED 6 0 1
C17ORF57 WILD-TYPE 115 108 71

Figure S1225.  Get High-res Image Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C17ORF57 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0298 (Fisher's exact test), Q value = 0.11

Table S2738.  Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C17ORF57 MUTATED 2 0 1 0 4
C17ORF57 WILD-TYPE 86 66 44 55 43

Figure S1226.  Get High-res Image Gene #274: 'C17ORF57 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BEND3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00887 (Fisher's exact test), Q value = 0.053

Table S2739.  Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BEND3 MUTATED 2 10 0 0
BEND3 WILD-TYPE 202 127 47 3

Figure S1227.  Get High-res Image Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BEND3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.081

Table S2740.  Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BEND3 MUTATED 0 7 1 0 1
BEND3 WILD-TYPE 39 89 43 88 79

Figure S1228.  Get High-res Image Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BEND3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.13

Table S2741.  Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BEND3 MUTATED 0 6 1 0 2
BEND3 WILD-TYPE 26 73 72 82 56

Figure S1229.  Get High-res Image Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BEND3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.43

Table S2742.  Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BEND3 MUTATED 2 3 3 1
BEND3 WILD-TYPE 125 48 68 68
'BEND3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S2743.  Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BEND3 MUTATED 0 4 5 1 1
BEND3 WILD-TYPE 84 81 80 68 46
'BEND3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.46

Table S2744.  Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BEND3 MUTATED 4 3 1 3
BEND3 WILD-TYPE 91 71 120 77
'BEND3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00102 (Fisher's exact test), Q value = 0.016

Table S2745.  Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BEND3 MUTATED 3 7 0 1 1 0
BEND3 WILD-TYPE 49 57 72 103 39 59

Figure S1230.  Get High-res Image Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BEND3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S2746.  Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BEND3 MUTATED 9 2 1
BEND3 WILD-TYPE 208 73 98
'BEND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S2747.  Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BEND3 MUTATED 3 2 4
BEND3 WILD-TYPE 118 106 68
'BEND3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S2748.  Gene #275: 'BEND3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BEND3 MUTATED 2 1 2 0 4
BEND3 WILD-TYPE 86 65 43 55 43
'FAM98C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00496 (Fisher's exact test), Q value = 0.038

Table S2749.  Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM98C MUTATED 0 7 1 0
FAM98C WILD-TYPE 204 130 46 3

Figure S1231.  Get High-res Image Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM98C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.21

Table S2750.  Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM98C MUTATED 1 2 2 0 0
FAM98C WILD-TYPE 38 94 42 88 80
'FAM98C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S2751.  Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM98C MUTATED 0 4 0 1 2
FAM98C WILD-TYPE 26 75 73 81 56
'FAM98C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.29

Table S2752.  Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM98C MUTATED 1 3 2 1
FAM98C WILD-TYPE 126 48 69 68
'FAM98C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.088

Table S2753.  Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM98C MUTATED 0 1 5 0 2
FAM98C WILD-TYPE 84 84 80 69 45

Figure S1232.  Get High-res Image Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM98C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00281 (Fisher's exact test), Q value = 0.028

Table S2754.  Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM98C MUTATED 1 1 0 6
FAM98C WILD-TYPE 94 73 121 74

Figure S1233.  Get High-res Image Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM98C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S2755.  Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM98C MUTATED 2 5 0 1 0 0
FAM98C WILD-TYPE 50 59 72 103 40 59

Figure S1234.  Get High-res Image Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM98C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0322 (Fisher's exact test), Q value = 0.11

Table S2756.  Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM98C MUTATED 8 0 0
FAM98C WILD-TYPE 209 75 99

Figure S1235.  Get High-res Image Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM98C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.89

Table S2757.  Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM98C MUTATED 3 1 1
FAM98C WILD-TYPE 118 107 71
'FAM98C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S2758.  Gene #276: 'FAM98C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM98C MUTATED 3 0 1 0 1
FAM98C WILD-TYPE 85 66 44 55 46
'KIAA0100 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S2759.  Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA0100 MUTATED 5 19 1 1
KIAA0100 WILD-TYPE 199 118 46 2

Figure S1236.  Get High-res Image Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0100 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0022 (Fisher's exact test), Q value = 0.024

Table S2760.  Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA0100 MUTATED 2 12 1 1 1
KIAA0100 WILD-TYPE 37 84 43 87 79

Figure S1237.  Get High-res Image Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0100 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S2761.  Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA0100 MUTATED 2 7 5 3 4
KIAA0100 WILD-TYPE 24 72 68 79 54
'KIAA0100 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00901 (Fisher's exact test), Q value = 0.054

Table S2762.  Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA0100 MUTATED 4 9 5 3
KIAA0100 WILD-TYPE 123 42 66 66

Figure S1238.  Get High-res Image Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0100 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.38

Table S2763.  Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA0100 MUTATED 2 7 9 4 4
KIAA0100 WILD-TYPE 82 78 76 65 43
'KIAA0100 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0962 (Fisher's exact test), Q value = 0.21

Table S2764.  Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA0100 MUTATED 7 5 4 10
KIAA0100 WILD-TYPE 88 69 117 70
'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00311 (Fisher's exact test), Q value = 0.03

Table S2765.  Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA0100 MUTATED 4 12 4 3 2 1
KIAA0100 WILD-TYPE 48 52 68 101 38 58

Figure S1239.  Get High-res Image Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S2766.  Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA0100 MUTATED 19 4 3
KIAA0100 WILD-TYPE 198 71 96
'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.78

Table S2767.  Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA0100 MUTATED 5 5 5
KIAA0100 WILD-TYPE 116 103 67
'KIAA0100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S2768.  Gene #277: 'KIAA0100 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA0100 MUTATED 6 2 3 0 4
KIAA0100 WILD-TYPE 82 64 42 55 43
'MYLK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.38

Table S2769.  Gene #278: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MYLK3 MUTATED 3 6 0 0
MYLK3 WILD-TYPE 201 131 47 3
'MYLK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.7

Table S2770.  Gene #278: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MYLK3 MUTATED 2 2 1 1 3
MYLK3 WILD-TYPE 37 94 43 87 77
'MYLK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.931 (Fisher's exact test), Q value = 0.96

Table S2771.  Gene #278: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MYLK3 MUTATED 0 2 3 2 2
MYLK3 WILD-TYPE 26 77 70 80 56
'MYLK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.63

Table S2772.  Gene #278: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MYLK3 MUTATED 3 3 1 2
MYLK3 WILD-TYPE 124 48 70 67
'MYLK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.59

Table S2773.  Gene #278: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MYLK3 MUTATED 1 4 3 1 0
MYLK3 WILD-TYPE 83 81 82 68 47
'MYLK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 0.79

Table S2774.  Gene #278: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MYLK3 MUTATED 2 3 2 2
MYLK3 WILD-TYPE 93 71 119 78
'MYLK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.48

Table S2775.  Gene #278: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MYLK3 MUTATED 2 0 1 5 0 1
MYLK3 WILD-TYPE 50 64 71 99 40 58
'MYLK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2776.  Gene #278: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MYLK3 MUTATED 5 2 2
MYLK3 WILD-TYPE 212 73 97
'MYLK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.8

Table S2777.  Gene #278: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MYLK3 MUTATED 3 4 1
MYLK3 WILD-TYPE 118 104 71
'MYLK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S2778.  Gene #278: 'MYLK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MYLK3 MUTATED 4 1 0 2 1
MYLK3 WILD-TYPE 84 65 45 53 46
'PLOD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.081

Table S2779.  Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLOD3 MUTATED 3 11 2 0
PLOD3 WILD-TYPE 201 126 45 3

Figure S1240.  Get High-res Image Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLOD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.11

Table S2780.  Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLOD3 MUTATED 1 9 0 2 1
PLOD3 WILD-TYPE 38 87 44 86 79

Figure S1241.  Get High-res Image Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLOD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 0.19

Table S2781.  Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLOD3 MUTATED 1 4 7 2 0
PLOD3 WILD-TYPE 25 75 66 80 58
'PLOD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S2782.  Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLOD3 MUTATED 4 5 3 2
PLOD3 WILD-TYPE 123 46 68 67
'PLOD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.36

Table S2783.  Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLOD3 MUTATED 2 3 7 1 3
PLOD3 WILD-TYPE 82 82 78 68 44
'PLOD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 0.19

Table S2784.  Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLOD3 MUTATED 3 2 3 8
PLOD3 WILD-TYPE 92 72 118 72
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.71

Table S2785.  Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLOD3 MUTATED 3 4 2 2 2 3
PLOD3 WILD-TYPE 49 60 70 102 38 56
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.73

Table S2786.  Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLOD3 MUTATED 11 2 3
PLOD3 WILD-TYPE 206 73 96
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S2787.  Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLOD3 MUTATED 6 2 4
PLOD3 WILD-TYPE 115 106 68
'PLOD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00701 (Fisher's exact test), Q value = 0.046

Table S2788.  Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLOD3 MUTATED 2 1 3 0 6
PLOD3 WILD-TYPE 86 65 42 55 41

Figure S1242.  Get High-res Image Gene #279: 'PLOD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RAD51AP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.061

Table S2789.  Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RAD51AP2 MUTATED 3 12 1 0
RAD51AP2 WILD-TYPE 201 125 46 3

Figure S1243.  Get High-res Image Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S2790.  Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RAD51AP2 MUTATED 1 8 1 2 1
RAD51AP2 WILD-TYPE 38 88 43 86 79
'RAD51AP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S2791.  Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RAD51AP2 MUTATED 1 4 5 0 3
RAD51AP2 WILD-TYPE 25 75 68 82 55
'RAD51AP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.072

Table S2792.  Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RAD51AP2 MUTATED 5 6 2 0
RAD51AP2 WILD-TYPE 122 45 69 69

Figure S1244.  Get High-res Image Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00838 (Fisher's exact test), Q value = 0.051

Table S2793.  Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RAD51AP2 MUTATED 2 1 10 1 2
RAD51AP2 WILD-TYPE 82 84 75 68 45

Figure S1245.  Get High-res Image Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00212 (Fisher's exact test), Q value = 0.024

Table S2794.  Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RAD51AP2 MUTATED 1 2 3 10
RAD51AP2 WILD-TYPE 94 72 118 70

Figure S1246.  Get High-res Image Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.19

Table S2795.  Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RAD51AP2 MUTATED 4 5 4 1 0 2
RAD51AP2 WILD-TYPE 48 59 68 103 40 57
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.2

Table S2796.  Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RAD51AP2 MUTATED 12 0 4
RAD51AP2 WILD-TYPE 205 75 95
'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00195 (Fisher's exact test), Q value = 0.023

Table S2797.  Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RAD51AP2 MUTATED 9 0 1
RAD51AP2 WILD-TYPE 112 108 71

Figure S1247.  Get High-res Image Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RAD51AP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.13

Table S2798.  Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RAD51AP2 MUTATED 3 0 1 1 5
RAD51AP2 WILD-TYPE 85 66 44 54 42

Figure S1248.  Get High-res Image Gene #280: 'RAD51AP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'U2AF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.019

Table S2799.  Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
U2AF2 MUTATED 1 11 1 0
U2AF2 WILD-TYPE 203 126 46 3

Figure S1249.  Get High-res Image Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'U2AF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00197 (Fisher's exact test), Q value = 0.023

Table S2800.  Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
U2AF2 MUTATED 0 10 0 1 1
U2AF2 WILD-TYPE 39 86 44 87 79

Figure S1250.  Get High-res Image Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'U2AF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.13

Table S2801.  Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
U2AF2 MUTATED 1 2 6 0 1
U2AF2 WILD-TYPE 25 77 67 82 57

Figure S1251.  Get High-res Image Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'U2AF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0488 (Fisher's exact test), Q value = 0.14

Table S2802.  Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
U2AF2 MUTATED 3 5 1 1
U2AF2 WILD-TYPE 124 46 70 68

Figure S1252.  Get High-res Image Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'U2AF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.64

Table S2803.  Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
U2AF2 MUTATED 1 4 5 2 2
U2AF2 WILD-TYPE 83 81 80 67 45
'U2AF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00866 (Fisher's exact test), Q value = 0.052

Table S2804.  Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
U2AF2 MUTATED 4 4 0 6
U2AF2 WILD-TYPE 91 70 121 74

Figure S1253.  Get High-res Image Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'U2AF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S2805.  Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
U2AF2 MUTATED 5 2 2 2 2 1
U2AF2 WILD-TYPE 47 62 70 102 38 58
'U2AF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.91

Table S2806.  Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
U2AF2 MUTATED 9 2 3
U2AF2 WILD-TYPE 208 73 96
'U2AF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.32

Table S2807.  Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
U2AF2 MUTATED 8 2 2
U2AF2 WILD-TYPE 113 106 70
'U2AF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.0087

Table S2808.  Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
U2AF2 MUTATED 1 2 1 0 8
U2AF2 WILD-TYPE 87 64 44 55 39

Figure S1254.  Get High-res Image Gene #281: 'U2AF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MFN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S2809.  Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MFN1 MUTATED 2 6 1 0
MFN1 WILD-TYPE 202 131 46 3
'MFN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 0.67

Table S2810.  Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MFN1 MUTATED 0 4 1 1 1
MFN1 WILD-TYPE 39 92 43 87 79
'MFN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S2811.  Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MFN1 MUTATED 1 3 1 0 2
MFN1 WILD-TYPE 25 76 72 82 56
'MFN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S2812.  Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MFN1 MUTATED 3 3 1 0
MFN1 WILD-TYPE 124 48 70 69
'MFN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S2813.  Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MFN1 MUTATED 1 0 3 3 1
MFN1 WILD-TYPE 83 85 82 66 46
'MFN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.072

Table S2814.  Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MFN1 MUTATED 6 1 1 0
MFN1 WILD-TYPE 89 73 120 80

Figure S1255.  Get High-res Image Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MFN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.11

Table S2815.  Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MFN1 MUTATED 1 5 2 0 0 1
MFN1 WILD-TYPE 51 59 70 104 40 58

Figure S1256.  Get High-res Image Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MFN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S2816.  Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MFN1 MUTATED 8 0 1
MFN1 WILD-TYPE 209 75 98
'MFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.14

Table S2817.  Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MFN1 MUTATED 3 0 4
MFN1 WILD-TYPE 118 108 68

Figure S1257.  Get High-res Image Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MFN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S2818.  Gene #282: 'MFN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MFN1 MUTATED 1 0 3 1 2
MFN1 WILD-TYPE 87 66 42 54 45
'ATP6V1C2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00071 (Fisher's exact test), Q value = 0.013

Table S2819.  Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ATP6V1C2 MUTATED 1 12 2 0
ATP6V1C2 WILD-TYPE 203 125 45 3

Figure S1258.  Get High-res Image Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.064

Table S2820.  Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ATP6V1C2 MUTATED 1 9 1 0 2
ATP6V1C2 WILD-TYPE 38 87 43 88 78

Figure S1259.  Get High-res Image Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S2821.  Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ATP6V1C2 MUTATED 1 3 5 0 3
ATP6V1C2 WILD-TYPE 25 76 68 82 55
'ATP6V1C2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00428 (Fisher's exact test), Q value = 0.035

Table S2822.  Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ATP6V1C2 MUTATED 3 7 1 1
ATP6V1C2 WILD-TYPE 124 44 70 68

Figure S1260.  Get High-res Image Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATP6V1C2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.13

Table S2823.  Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ATP6V1C2 MUTATED 0 2 7 2 2
ATP6V1C2 WILD-TYPE 84 83 78 67 45

Figure S1261.  Get High-res Image Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.29

Table S2824.  Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ATP6V1C2 MUTATED 2 3 2 6
ATP6V1C2 WILD-TYPE 93 71 119 74
'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.059 (Fisher's exact test), Q value = 0.16

Table S2825.  Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ATP6V1C2 MUTATED 4 4 4 1 2 0
ATP6V1C2 WILD-TYPE 48 60 68 103 38 59
'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S2826.  Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ATP6V1C2 MUTATED 13 2 0
ATP6V1C2 WILD-TYPE 204 73 99

Figure S1262.  Get High-res Image Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 0.13

Table S2827.  Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ATP6V1C2 MUTATED 4 2 7
ATP6V1C2 WILD-TYPE 117 106 65

Figure S1263.  Get High-res Image Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ATP6V1C2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00572 (Fisher's exact test), Q value = 0.042

Table S2828.  Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ATP6V1C2 MUTATED 2 2 2 0 7
ATP6V1C2 WILD-TYPE 86 64 43 55 40

Figure S1264.  Get High-res Image Gene #283: 'ATP6V1C2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NFE2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.2

Table S2829.  Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NFE2L1 MUTATED 3 8 0 0
NFE2L1 WILD-TYPE 201 129 47 3
'NFE2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.21

Table S2830.  Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NFE2L1 MUTATED 2 4 0 0 1
NFE2L1 WILD-TYPE 37 92 44 88 79
'NFE2L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S2831.  Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NFE2L1 MUTATED 1 3 3 1 1
NFE2L1 WILD-TYPE 25 76 70 81 57
'NFE2L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.94

Table S2832.  Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NFE2L1 MUTATED 4 2 2 1
NFE2L1 WILD-TYPE 123 49 69 68
'NFE2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.21

Table S2833.  Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NFE2L1 MUTATED 0 1 5 3 2
NFE2L1 WILD-TYPE 84 84 80 66 45
'NFE2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.13

Table S2834.  Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NFE2L1 MUTATED 4 3 0 4
NFE2L1 WILD-TYPE 91 71 121 76

Figure S1265.  Get High-res Image Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S2835.  Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NFE2L1 MUTATED 1 5 2 2 1 0
NFE2L1 WILD-TYPE 51 59 70 102 39 59
'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.6

Table S2836.  Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NFE2L1 MUTATED 8 2 1
NFE2L1 WILD-TYPE 209 73 98
'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S2837.  Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NFE2L1 MUTATED 1 2 3
NFE2L1 WILD-TYPE 120 106 69
'NFE2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S2838.  Gene #284: 'NFE2L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NFE2L1 MUTATED 1 1 0 1 3
NFE2L1 WILD-TYPE 87 65 45 54 44
'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.086

Table S2839.  Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ERF MUTATED 3 11 1 0
ERF WILD-TYPE 201 126 46 3

Figure S1266.  Get High-res Image Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.36

Table S2840.  Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ERF MUTATED 2 7 1 2 1
ERF WILD-TYPE 37 89 43 86 79
'ERF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.861 (Fisher's exact test), Q value = 0.91

Table S2841.  Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ERF MUTATED 1 5 5 3 2
ERF WILD-TYPE 25 74 68 79 56
'ERF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.33

Table S2842.  Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ERF MUTATED 4 5 5 2
ERF WILD-TYPE 123 46 66 67
'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0413 (Fisher's exact test), Q value = 0.13

Table S2843.  Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ERF MUTATED 2 2 9 1 1
ERF WILD-TYPE 82 83 76 68 46

Figure S1267.  Get High-res Image Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.49

Table S2844.  Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ERF MUTATED 3 3 3 6
ERF WILD-TYPE 92 71 118 74
'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.53

Table S2845.  Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ERF MUTATED 2 6 3 3 1 1
ERF WILD-TYPE 50 58 69 101 39 58
'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 0.93

Table S2846.  Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ERF MUTATED 10 2 4
ERF WILD-TYPE 207 73 95
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.099 (Fisher's exact test), Q value = 0.22

Table S2847.  Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ERF MUTATED 2 2 5
ERF WILD-TYPE 119 106 67
'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.72

Table S2848.  Gene #285: 'ERF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ERF MUTATED 3 1 3 1 1
ERF WILD-TYPE 85 65 42 54 46
'TAS2R10 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S2849.  Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TAS2R10 MUTATED 2 2 0 0
TAS2R10 WILD-TYPE 202 135 47 3
'TAS2R10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.57

Table S2850.  Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TAS2R10 MUTATED 0 3 0 1 0
TAS2R10 WILD-TYPE 39 93 44 87 80
'TAS2R10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.15

Table S2851.  Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TAS2R10 MUTATED 1 0 2 0 0
TAS2R10 WILD-TYPE 25 79 71 82 58
'TAS2R10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S2852.  Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TAS2R10 MUTATED 1 2 0 0
TAS2R10 WILD-TYPE 126 49 71 69
'TAS2R10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 0.84

Table S2853.  Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TAS2R10 MUTATED 1 0 1 1 1
TAS2R10 WILD-TYPE 83 85 84 68 46
'TAS2R10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S2854.  Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TAS2R10 MUTATED 2 0 0 2
TAS2R10 WILD-TYPE 93 74 121 78
'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.06

Table S2855.  Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TAS2R10 MUTATED 3 0 0 0 0 1
TAS2R10 WILD-TYPE 49 64 72 104 40 58

Figure S1268.  Get High-res Image Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.87

Table S2856.  Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TAS2R10 MUTATED 3 0 1
TAS2R10 WILD-TYPE 214 75 98
'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.57

Table S2857.  Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TAS2R10 MUTATED 2 0 1
TAS2R10 WILD-TYPE 119 108 71
'TAS2R10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00659 (Fisher's exact test), Q value = 0.045

Table S2858.  Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TAS2R10 MUTATED 0 0 0 0 3
TAS2R10 WILD-TYPE 88 66 45 55 44

Figure S1269.  Get High-res Image Gene #286: 'TAS2R10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM82A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.11

Table S2859.  Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM82A1 MUTATED 0 5 0 0
FAM82A1 WILD-TYPE 204 132 47 3

Figure S1270.  Get High-res Image Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM82A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.8

Table S2860.  Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM82A1 MUTATED 0 2 0 0 1
FAM82A1 WILD-TYPE 39 94 44 88 79
'FAM82A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.085

Table S2861.  Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM82A1 MUTATED 2 1 0 0 2
FAM82A1 WILD-TYPE 24 78 73 82 56

Figure S1271.  Get High-res Image Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FAM82A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 0.82

Table S2862.  Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM82A1 MUTATED 3 1 1 0
FAM82A1 WILD-TYPE 124 50 70 69
'FAM82A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.41

Table S2863.  Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM82A1 MUTATED 0 0 2 2 1
FAM82A1 WILD-TYPE 84 85 83 67 46
'FAM82A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.52

Table S2864.  Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM82A1 MUTATED 3 0 1 1
FAM82A1 WILD-TYPE 92 74 120 79
'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S2865.  Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM82A1 MUTATED 0 4 1 0 0 0
FAM82A1 WILD-TYPE 52 60 71 104 40 59

Figure S1272.  Get High-res Image Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S2866.  Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM82A1 MUTATED 4 0 1
FAM82A1 WILD-TYPE 213 75 98
'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.067

Table S2867.  Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM82A1 MUTATED 0 0 3
FAM82A1 WILD-TYPE 121 108 69

Figure S1273.  Get High-res Image Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FAM82A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S2868.  Gene #287: 'FAM82A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM82A1 MUTATED 1 0 2 0 0
FAM82A1 WILD-TYPE 87 66 43 55 47
'DYRK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0733 (Fisher's exact test), Q value = 0.18

Table S2869.  Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DYRK4 MUTATED 1 6 1 0
DYRK4 WILD-TYPE 203 131 46 3
'DYRK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 0.21

Table S2870.  Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DYRK4 MUTATED 1 4 1 0 0
DYRK4 WILD-TYPE 38 92 43 88 80
'DYRK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 0.92

Table S2871.  Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DYRK4 MUTATED 0 2 2 1 2
DYRK4 WILD-TYPE 26 77 71 81 56
'DYRK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S2872.  Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DYRK4 MUTATED 1 3 1 2
DYRK4 WILD-TYPE 126 48 70 67
'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.45

Table S2873.  Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DYRK4 MUTATED 0 2 4 1 1
DYRK4 WILD-TYPE 84 83 81 68 46
'DYRK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0652 (Fisher's exact test), Q value = 0.17

Table S2874.  Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DYRK4 MUTATED 2 2 0 4
DYRK4 WILD-TYPE 93 72 121 76
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.65

Table S2875.  Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DYRK4 MUTATED 2 2 2 1 1 0
DYRK4 WILD-TYPE 50 62 70 103 39 59
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S2876.  Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DYRK4 MUTATED 6 1 1
DYRK4 WILD-TYPE 211 74 98
'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.1

Table S2877.  Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DYRK4 MUTATED 5 0 0
DYRK4 WILD-TYPE 116 108 72

Figure S1274.  Get High-res Image Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DYRK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S2878.  Gene #288: 'DYRK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DYRK4 MUTATED 4 0 0 0 1
DYRK4 WILD-TYPE 84 66 45 55 46
'BTNL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S2879.  Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BTNL3 MUTATED 1 5 0 0
BTNL3 WILD-TYPE 203 132 47 3
'BTNL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.68

Table S2880.  Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BTNL3 MUTATED 0 1 2 1 1
BTNL3 WILD-TYPE 39 95 42 87 79
'BTNL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.077

Table S2881.  Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BTNL3 MUTATED 1 4 0 0 0
BTNL3 WILD-TYPE 25 75 73 82 58

Figure S1275.  Get High-res Image Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BTNL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S2882.  Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BTNL3 MUTATED 1 1 3 0
BTNL3 WILD-TYPE 126 50 68 69
'BTNL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 0.99

Table S2883.  Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BTNL3 MUTATED 1 2 1 1 0
BTNL3 WILD-TYPE 83 83 84 68 47
'BTNL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.73

Table S2884.  Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BTNL3 MUTATED 1 0 2 2
BTNL3 WILD-TYPE 94 74 119 78
'BTNL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.5

Table S2885.  Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BTNL3 MUTATED 0 3 1 2 0 0
BTNL3 WILD-TYPE 52 61 71 102 40 59
'BTNL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S2886.  Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BTNL3 MUTATED 4 1 1
BTNL3 WILD-TYPE 213 74 98
'BTNL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S2887.  Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BTNL3 MUTATED 0 2 2
BTNL3 WILD-TYPE 121 106 70
'BTNL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S2888.  Gene #289: 'BTNL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BTNL3 MUTATED 1 0 2 1 0
BTNL3 WILD-TYPE 87 66 43 54 47
'ADNP MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S2889.  Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ADNP MUTATED 1 17 0 0
ADNP WILD-TYPE 203 120 47 3

Figure S1276.  Get High-res Image Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADNP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0023 (Fisher's exact test), Q value = 0.025

Table S2890.  Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ADNP MUTATED 1 10 1 0 1
ADNP WILD-TYPE 38 86 43 88 79

Figure S1277.  Get High-res Image Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADNP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S2891.  Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ADNP MUTATED 3 7 5 2 1
ADNP WILD-TYPE 23 72 68 80 57
'ADNP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.095

Table S2892.  Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ADNP MUTATED 5 8 3 2
ADNP WILD-TYPE 122 43 68 67

Figure S1278.  Get High-res Image Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADNP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S2893.  Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ADNP MUTATED 1 3 7 2 4
ADNP WILD-TYPE 83 82 78 67 43
'ADNP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.037 (Fisher's exact test), Q value = 0.12

Table S2894.  Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ADNP MUTATED 7 3 1 6
ADNP WILD-TYPE 88 71 120 74

Figure S1279.  Get High-res Image Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADNP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.068

Table S2895.  Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ADNP MUTATED 4 8 1 2 2 1
ADNP WILD-TYPE 48 56 71 102 38 58

Figure S1280.  Get High-res Image Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADNP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S2896.  Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ADNP MUTATED 14 2 2
ADNP WILD-TYPE 203 73 97
'ADNP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S2897.  Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ADNP MUTATED 2 2 7
ADNP WILD-TYPE 119 106 65

Figure S1281.  Get High-res Image Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ADNP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S2898.  Gene #290: 'ADNP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ADNP MUTATED 4 1 3 0 3
ADNP WILD-TYPE 84 65 42 55 44
'ELF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00456 (Fisher's exact test), Q value = 0.036

Table S2899.  Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ELF3 MUTATED 1 10 1 0
ELF3 WILD-TYPE 203 127 46 3

Figure S1282.  Get High-res Image Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ELF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S2900.  Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ELF3 MUTATED 2 4 2 0 1
ELF3 WILD-TYPE 37 92 42 88 79
'ELF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.1

Table S2901.  Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ELF3 MUTATED 1 8 1 1 1
ELF3 WILD-TYPE 25 71 72 81 57

Figure S1283.  Get High-res Image Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ELF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.013

Table S2902.  Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ELF3 MUTATED 1 5 6 0
ELF3 WILD-TYPE 126 46 65 69

Figure S1284.  Get High-res Image Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S2903.  Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ELF3 MUTATED 0 2 5 1 4
ELF3 WILD-TYPE 84 83 80 68 43

Figure S1285.  Get High-res Image Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ELF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S2904.  Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ELF3 MUTATED 2 2 2 6
ELF3 WILD-TYPE 93 72 119 74
'ELF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S2905.  Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ELF3 MUTATED 2 10 1 0 0 0
ELF3 WILD-TYPE 50 54 71 104 40 59

Figure S1286.  Get High-res Image Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00273 (Fisher's exact test), Q value = 0.028

Table S2906.  Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ELF3 MUTATED 13 0 0
ELF3 WILD-TYPE 204 75 99

Figure S1287.  Get High-res Image Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S2907.  Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ELF3 MUTATED 1 0 8
ELF3 WILD-TYPE 120 108 64

Figure S1288.  Get High-res Image Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ELF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00626 (Fisher's exact test), Q value = 0.044

Table S2908.  Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ELF3 MUTATED 2 0 5 0 2
ELF3 WILD-TYPE 86 66 40 55 45

Figure S1289.  Get High-res Image Gene #291: 'ELF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0037

Table S2909.  Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NID2 MUTATED 1 14 4 0
NID2 WILD-TYPE 203 123 43 3

Figure S1290.  Get High-res Image Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NID2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.078

Table S2910.  Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NID2 MUTATED 3 8 1 0 2
NID2 WILD-TYPE 36 88 43 88 78

Figure S1291.  Get High-res Image Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NID2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S2911.  Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NID2 MUTATED 1 4 7 2 4
NID2 WILD-TYPE 25 75 66 80 54
'NID2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.087

Table S2912.  Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NID2 MUTATED 6 8 2 2
NID2 WILD-TYPE 121 43 69 67

Figure S1292.  Get High-res Image Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NID2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00423 (Fisher's exact test), Q value = 0.035

Table S2913.  Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NID2 MUTATED 0 2 10 3 2
NID2 WILD-TYPE 84 83 75 66 45

Figure S1293.  Get High-res Image Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NID2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S2914.  Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NID2 MUTATED 6 3 2 6
NID2 WILD-TYPE 89 71 119 74
'NID2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.1

Table S2915.  Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NID2 MUTATED 2 8 5 3 1 0
NID2 WILD-TYPE 50 56 67 101 39 59

Figure S1294.  Get High-res Image Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NID2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.18

Table S2916.  Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NID2 MUTATED 15 3 1
NID2 WILD-TYPE 202 72 98
'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S2917.  Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NID2 MUTATED 5 2 5
NID2 WILD-TYPE 116 106 67
'NID2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.29

Table S2918.  Gene #292: 'NID2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NID2 MUTATED 3 2 3 0 4
NID2 WILD-TYPE 85 64 42 55 43
'FBN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S2919.  Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FBN3 MUTATED 5 22 6 0
FBN3 WILD-TYPE 199 115 41 3

Figure S1295.  Get High-res Image Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00104 (Fisher's exact test), Q value = 0.016

Table S2920.  Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FBN3 MUTATED 1 17 4 3 2
FBN3 WILD-TYPE 38 79 40 85 78

Figure S1296.  Get High-res Image Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FBN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.14

Table S2921.  Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FBN3 MUTATED 5 9 7 2 6
FBN3 WILD-TYPE 21 70 66 80 52

Figure S1297.  Get High-res Image Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FBN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00483 (Fisher's exact test), Q value = 0.038

Table S2922.  Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FBN3 MUTATED 9 12 5 3
FBN3 WILD-TYPE 118 39 66 66

Figure S1298.  Get High-res Image Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00871 (Fisher's exact test), Q value = 0.053

Table S2923.  Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FBN3 MUTATED 3 5 14 3 7
FBN3 WILD-TYPE 81 80 71 66 40

Figure S1299.  Get High-res Image Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S2924.  Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FBN3 MUTATED 5 3 4 20
FBN3 WILD-TYPE 90 71 117 60

Figure S1300.  Get High-res Image Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 0.022

Table S2925.  Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FBN3 MUTATED 9 11 5 2 3 3
FBN3 WILD-TYPE 43 53 67 102 37 56

Figure S1301.  Get High-res Image Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00082 (Fisher's exact test), Q value = 0.014

Table S2926.  Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FBN3 MUTATED 28 1 4
FBN3 WILD-TYPE 189 74 95

Figure S1302.  Get High-res Image Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0422 (Fisher's exact test), Q value = 0.13

Table S2927.  Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FBN3 MUTATED 12 3 8
FBN3 WILD-TYPE 109 105 64

Figure S1303.  Get High-res Image Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FBN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 0.019

Table S2928.  Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FBN3 MUTATED 9 1 6 0 7
FBN3 WILD-TYPE 79 65 39 55 40

Figure S1304.  Get High-res Image Gene #293: 'FBN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ABCA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00138 (Fisher's exact test), Q value = 0.019

Table S2929.  Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABCA6 MUTATED 2 12 0 0
ABCA6 WILD-TYPE 202 125 47 3

Figure S1305.  Get High-res Image Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S2930.  Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABCA6 MUTATED 1 6 2 1 1
ABCA6 WILD-TYPE 38 90 42 87 79
'ABCA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S2931.  Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABCA6 MUTATED 0 3 4 1 5
ABCA6 WILD-TYPE 26 76 69 81 53
'ABCA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00664 (Fisher's exact test), Q value = 0.045

Table S2932.  Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABCA6 MUTATED 3 7 1 2
ABCA6 WILD-TYPE 124 44 70 67

Figure S1306.  Get High-res Image Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABCA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.33

Table S2933.  Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABCA6 MUTATED 1 5 6 1 1
ABCA6 WILD-TYPE 83 80 79 68 46
'ABCA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.095

Table S2934.  Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABCA6 MUTATED 2 2 2 8
ABCA6 WILD-TYPE 93 72 119 72

Figure S1307.  Get High-res Image Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.13

Table S2935.  Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABCA6 MUTATED 5 5 1 3 1 0
ABCA6 WILD-TYPE 47 59 71 101 39 59

Figure S1308.  Get High-res Image Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S2936.  Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABCA6 MUTATED 12 2 1
ABCA6 WILD-TYPE 205 73 98
'ABCA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.46

Table S2937.  Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABCA6 MUTATED 7 2 2
ABCA6 WILD-TYPE 114 106 70
'ABCA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.45

Table S2938.  Gene #294: 'ABCA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABCA6 MUTATED 5 2 1 0 3
ABCA6 WILD-TYPE 83 64 44 55 44
'IDE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S2939.  Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IDE MUTATED 1 8 2 0
IDE WILD-TYPE 203 129 45 3

Figure S1309.  Get High-res Image Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IDE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.11

Table S2940.  Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IDE MUTATED 2 6 0 1 0
IDE WILD-TYPE 37 90 44 87 80

Figure S1310.  Get High-res Image Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IDE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00714 (Fisher's exact test), Q value = 0.047

Table S2941.  Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IDE MUTATED 0 1 3 0 6
IDE WILD-TYPE 26 78 70 82 52

Figure S1311.  Get High-res Image Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IDE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S2942.  Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IDE MUTATED 3 7 0 0
IDE WILD-TYPE 124 44 71 69

Figure S1312.  Get High-res Image Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IDE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.59

Table S2943.  Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IDE MUTATED 1 3 3 1 3
IDE WILD-TYPE 83 82 82 68 44
'IDE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00945 (Fisher's exact test), Q value = 0.055

Table S2944.  Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IDE MUTATED 1 2 1 7
IDE WILD-TYPE 94 72 120 73

Figure S1313.  Get High-res Image Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IDE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 0.83

Table S2945.  Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IDE MUTATED 3 2 2 3 0 1
IDE WILD-TYPE 49 62 70 101 40 58
'IDE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 0.95

Table S2946.  Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IDE MUTATED 7 2 2
IDE WILD-TYPE 210 73 97
'IDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.59

Table S2947.  Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IDE MUTATED 5 2 1
IDE WILD-TYPE 116 106 71
'IDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.18

Table S2948.  Gene #295: 'IDE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IDE MUTATED 2 2 0 0 4
IDE WILD-TYPE 86 64 45 55 43
'BCLAF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.13

Table S2949.  Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BCLAF1 MUTATED 10 18 2 0
BCLAF1 WILD-TYPE 194 119 45 3

Figure S1314.  Get High-res Image Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCLAF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S2950.  Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BCLAF1 MUTATED 5 11 3 4 3
BCLAF1 WILD-TYPE 34 85 41 84 77
'BCLAF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00268 (Fisher's exact test), Q value = 0.027

Table S2951.  Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BCLAF1 MUTATED 4 7 6 0 8
BCLAF1 WILD-TYPE 22 72 67 82 50

Figure S1315.  Get High-res Image Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BCLAF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S2952.  Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BCLAF1 MUTATED 10 7 5 3
BCLAF1 WILD-TYPE 117 44 66 66
'BCLAF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.4

Table S2953.  Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BCLAF1 MUTATED 5 3 10 5 5
BCLAF1 WILD-TYPE 79 82 75 64 42
'BCLAF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0371 (Fisher's exact test), Q value = 0.12

Table S2954.  Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BCLAF1 MUTATED 9 2 6 11
BCLAF1 WILD-TYPE 86 72 115 69

Figure S1316.  Get High-res Image Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.46

Table S2955.  Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BCLAF1 MUTATED 4 9 7 5 2 3
BCLAF1 WILD-TYPE 48 55 65 99 38 56
'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.085

Table S2956.  Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BCLAF1 MUTATED 24 2 4
BCLAF1 WILD-TYPE 193 73 95

Figure S1317.  Get High-res Image Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.013

Table S2957.  Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BCLAF1 MUTATED 12 1 10
BCLAF1 WILD-TYPE 109 107 62

Figure S1318.  Get High-res Image Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BCLAF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0164 (Fisher's exact test), Q value = 0.075

Table S2958.  Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BCLAF1 MUTATED 9 0 5 3 6
BCLAF1 WILD-TYPE 79 66 40 52 41

Figure S1319.  Get High-res Image Gene #296: 'BCLAF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DLGAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.474 (Fisher's exact test), Q value = 0.59

Table S2959.  Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DLGAP3 MUTATED 8 10 2 0
DLGAP3 WILD-TYPE 196 127 45 3
'DLGAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.12

Table S2960.  Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DLGAP3 MUTATED 2 11 2 1 3
DLGAP3 WILD-TYPE 37 85 42 87 77

Figure S1320.  Get High-res Image Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DLGAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S2961.  Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DLGAP3 MUTATED 1 6 3 3 4
DLGAP3 WILD-TYPE 25 73 70 79 54
'DLGAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.096 (Fisher's exact test), Q value = 0.21

Table S2962.  Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DLGAP3 MUTATED 4 6 5 2
DLGAP3 WILD-TYPE 123 45 66 67
'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.13

Table S2963.  Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DLGAP3 MUTATED 2 2 10 2 3
DLGAP3 WILD-TYPE 82 83 75 67 44

Figure S1321.  Get High-res Image Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DLGAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 0.19

Table S2964.  Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DLGAP3 MUTATED 3 3 4 9
DLGAP3 WILD-TYPE 92 71 117 71
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.21

Table S2965.  Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DLGAP3 MUTATED 7 4 4 3 1 1
DLGAP3 WILD-TYPE 45 60 68 101 39 58
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 0.082

Table S2966.  Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DLGAP3 MUTATED 17 2 1
DLGAP3 WILD-TYPE 200 73 98

Figure S1322.  Get High-res Image Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.34

Table S2967.  Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DLGAP3 MUTATED 8 3 6
DLGAP3 WILD-TYPE 113 105 66
'DLGAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S2968.  Gene #297: 'DLGAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DLGAP3 MUTATED 5 3 2 1 6
DLGAP3 WILD-TYPE 83 63 43 54 41
'ZC3H13 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S2969.  Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZC3H13 MUTATED 5 24 1 0
ZC3H13 WILD-TYPE 199 113 46 3

Figure S1323.  Get High-res Image Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZC3H13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S2970.  Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZC3H13 MUTATED 2 16 3 0 2
ZC3H13 WILD-TYPE 37 80 41 88 78

Figure S1324.  Get High-res Image Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0042 (Fisher's exact test), Q value = 0.035

Table S2971.  Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZC3H13 MUTATED 2 11 6 0 5
ZC3H13 WILD-TYPE 24 68 67 82 53

Figure S1325.  Get High-res Image Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZC3H13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S2972.  Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZC3H13 MUTATED 4 11 8 1
ZC3H13 WILD-TYPE 123 40 63 68

Figure S1326.  Get High-res Image Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00535 (Fisher's exact test), Q value = 0.04

Table S2973.  Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZC3H13 MUTATED 3 5 16 4 2
ZC3H13 WILD-TYPE 81 80 69 65 45

Figure S1327.  Get High-res Image Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00993 (Fisher's exact test), Q value = 0.056

Table S2974.  Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZC3H13 MUTATED 9 4 4 13
ZC3H13 WILD-TYPE 86 70 117 67

Figure S1328.  Get High-res Image Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00404 (Fisher's exact test), Q value = 0.034

Table S2975.  Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZC3H13 MUTATED 8 10 6 2 3 2
ZC3H13 WILD-TYPE 44 54 66 102 37 57

Figure S1329.  Get High-res Image Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0648 (Fisher's exact test), Q value = 0.17

Table S2976.  Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZC3H13 MUTATED 23 2 6
ZC3H13 WILD-TYPE 194 73 93
'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S2977.  Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZC3H13 MUTATED 8 5 7
ZC3H13 WILD-TYPE 113 103 65
'ZC3H13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S2978.  Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZC3H13 MUTATED 8 2 4 0 6
ZC3H13 WILD-TYPE 80 64 41 55 41

Figure S1330.  Get High-res Image Gene #298: 'ZC3H13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RTN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00754 (Fisher's exact test), Q value = 0.048

Table S2979.  Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RTN2 MUTATED 2 11 2 0
RTN2 WILD-TYPE 202 126 45 3

Figure S1331.  Get High-res Image Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RTN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S2980.  Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RTN2 MUTATED 0 7 2 2 1
RTN2 WILD-TYPE 39 89 42 86 79
'RTN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.48

Table S2981.  Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RTN2 MUTATED 2 5 3 1 3
RTN2 WILD-TYPE 24 74 70 81 55
'RTN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0544 (Fisher's exact test), Q value = 0.15

Table S2982.  Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RTN2 MUTATED 3 5 5 1
RTN2 WILD-TYPE 124 46 66 68
'RTN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.74

Table S2983.  Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RTN2 MUTATED 2 5 3 1 2
RTN2 WILD-TYPE 82 80 82 68 45
'RTN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S2984.  Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RTN2 MUTATED 3 2 2 6
RTN2 WILD-TYPE 92 72 119 74
'RTN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0541 (Fisher's exact test), Q value = 0.15

Table S2985.  Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RTN2 MUTATED 1 7 3 1 1 2
RTN2 WILD-TYPE 51 57 69 103 39 57
'RTN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0761 (Fisher's exact test), Q value = 0.18

Table S2986.  Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RTN2 MUTATED 12 0 3
RTN2 WILD-TYPE 205 75 96
'RTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.02

Table S2987.  Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RTN2 MUTATED 2 1 8
RTN2 WILD-TYPE 119 107 64

Figure S1332.  Get High-res Image Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RTN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.077

Table S2988.  Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RTN2 MUTATED 2 0 5 1 3
RTN2 WILD-TYPE 86 66 40 54 44

Figure S1333.  Get High-res Image Gene #299: 'RTN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RAI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.01

Table S2989.  Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RAI1 MUTATED 6 21 2 0
RAI1 WILD-TYPE 198 116 45 3

Figure S1334.  Get High-res Image Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAI1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.093

Table S2990.  Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RAI1 MUTATED 2 14 2 4 2
RAI1 WILD-TYPE 37 82 42 84 78

Figure S1335.  Get High-res Image Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RAI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S2991.  Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RAI1 MUTATED 2 7 6 2 8
RAI1 WILD-TYPE 24 72 67 80 50
'RAI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.085

Table S2992.  Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RAI1 MUTATED 7 9 7 2
RAI1 WILD-TYPE 120 42 64 67

Figure S1336.  Get High-res Image Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RAI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.41

Table S2993.  Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RAI1 MUTATED 5 5 12 4 3
RAI1 WILD-TYPE 79 80 73 65 44
'RAI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00269 (Fisher's exact test), Q value = 0.028

Table S2994.  Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RAI1 MUTATED 5 3 6 15
RAI1 WILD-TYPE 90 71 115 65

Figure S1337.  Get High-res Image Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RAI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00568 (Fisher's exact test), Q value = 0.041

Table S2995.  Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RAI1 MUTATED 9 8 5 6 0 1
RAI1 WILD-TYPE 43 56 67 98 40 58

Figure S1338.  Get High-res Image Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RAI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.11

Table S2996.  Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RAI1 MUTATED 23 3 3
RAI1 WILD-TYPE 194 72 96

Figure S1339.  Get High-res Image Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RAI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.52

Table S2997.  Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RAI1 MUTATED 11 5 4
RAI1 WILD-TYPE 110 103 68
'RAI1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.31

Table S2998.  Gene #300: 'RAI1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RAI1 MUTATED 7 1 3 3 6
RAI1 WILD-TYPE 81 65 42 52 41
'C6ORF165 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00582 (Fisher's exact test), Q value = 0.042

Table S2999.  Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C6ORF165 MUTATED 2 11 3 0
C6ORF165 WILD-TYPE 202 126 44 3

Figure S1340.  Get High-res Image Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C6ORF165 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S3000.  Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C6ORF165 MUTATED 2 7 2 1 2
C6ORF165 WILD-TYPE 37 89 42 87 78
'C6ORF165 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.15

Table S3001.  Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C6ORF165 MUTATED 1 7 3 0 3
C6ORF165 WILD-TYPE 25 72 70 82 55
'C6ORF165 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00695 (Fisher's exact test), Q value = 0.046

Table S3002.  Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C6ORF165 MUTATED 3 5 6 0
C6ORF165 WILD-TYPE 124 46 65 69

Figure S1341.  Get High-res Image Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S3003.  Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C6ORF165 MUTATED 1 2 7 3 2
C6ORF165 WILD-TYPE 83 83 78 66 45
'C6ORF165 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0362 (Fisher's exact test), Q value = 0.12

Table S3004.  Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C6ORF165 MUTATED 6 0 3 6
C6ORF165 WILD-TYPE 89 74 118 74

Figure S1342.  Get High-res Image Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S3005.  Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C6ORF165 MUTATED 4 3 5 1 1 1
C6ORF165 WILD-TYPE 48 61 67 103 39 58
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S3006.  Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C6ORF165 MUTATED 12 1 2
C6ORF165 WILD-TYPE 205 74 97
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S3007.  Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C6ORF165 MUTATED 6 1 4
C6ORF165 WILD-TYPE 115 107 68
'C6ORF165 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0428 (Fisher's exact test), Q value = 0.13

Table S3008.  Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C6ORF165 MUTATED 4 0 1 1 5
C6ORF165 WILD-TYPE 84 66 44 54 42

Figure S1343.  Get High-res Image Gene #301: 'C6ORF165 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HIAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0508 (Fisher's exact test), Q value = 0.14

Table S3009.  Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HIAT1 MUTATED 1 6 2 0
HIAT1 WILD-TYPE 203 131 45 3
'HIAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S3010.  Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HIAT1 MUTATED 2 3 0 1 0
HIAT1 WILD-TYPE 37 93 44 87 80
'HIAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S3011.  Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HIAT1 MUTATED 0 2 3 1 3
HIAT1 WILD-TYPE 26 77 70 81 55
'HIAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00231 (Fisher's exact test), Q value = 0.025

Table S3012.  Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HIAT1 MUTATED 1 6 1 1
HIAT1 WILD-TYPE 126 45 70 68

Figure S1344.  Get High-res Image Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HIAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.63

Table S3013.  Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HIAT1 MUTATED 0 2 3 1 1
HIAT1 WILD-TYPE 84 83 82 68 46
'HIAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.058

Table S3014.  Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HIAT1 MUTATED 1 1 0 5
HIAT1 WILD-TYPE 94 73 121 75

Figure S1345.  Get High-res Image Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HIAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.6

Table S3015.  Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HIAT1 MUTATED 2 3 2 2 0 0
HIAT1 WILD-TYPE 50 61 70 102 40 59
'HIAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0994 (Fisher's exact test), Q value = 0.22

Table S3016.  Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HIAT1 MUTATED 8 1 0
HIAT1 WILD-TYPE 209 74 99
'HIAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 0.22

Table S3017.  Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HIAT1 MUTATED 5 0 1
HIAT1 WILD-TYPE 116 108 71
'HIAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S3018.  Gene #302: 'HIAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HIAT1 MUTATED 4 0 1 0 1
HIAT1 WILD-TYPE 84 66 44 55 46
'HSPG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00395 (Fisher's exact test), Q value = 0.034

Table S3019.  Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HSPG2 MUTATED 23 34 4 0
HSPG2 WILD-TYPE 181 103 43 3

Figure S1346.  Get High-res Image Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HSPG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.089

Table S3020.  Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HSPG2 MUTATED 3 23 10 10 8
HSPG2 WILD-TYPE 36 73 34 78 72

Figure S1347.  Get High-res Image Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HSPG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.15

Table S3021.  Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HSPG2 MUTATED 4 16 8 5 11
HSPG2 WILD-TYPE 22 63 65 77 47
'HSPG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S3022.  Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HSPG2 MUTATED 14 14 11 5
HSPG2 WILD-TYPE 113 37 60 64

Figure S1348.  Get High-res Image Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HSPG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S3023.  Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HSPG2 MUTATED 10 13 22 9 6
HSPG2 WILD-TYPE 74 72 63 60 41
'HSPG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S3024.  Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HSPG2 MUTATED 15 9 17 19
HSPG2 WILD-TYPE 80 65 104 61
'HSPG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.48

Table S3025.  Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HSPG2 MUTATED 11 12 15 12 4 8
HSPG2 WILD-TYPE 41 52 57 92 36 51
'HSPG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S3026.  Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HSPG2 MUTATED 42 5 15
HSPG2 WILD-TYPE 175 70 84

Figure S1349.  Get High-res Image Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HSPG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 0.84

Table S3027.  Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HSPG2 MUTATED 17 14 12
HSPG2 WILD-TYPE 104 94 60
'HSPG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S3028.  Gene #303: 'HSPG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HSPG2 MUTATED 12 5 5 10 11
HSPG2 WILD-TYPE 76 61 40 45 36
'NBN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.13

Table S3029.  Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NBN MUTATED 3 9 3 0
NBN WILD-TYPE 201 128 44 3

Figure S1350.  Get High-res Image Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NBN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.21

Table S3030.  Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NBN MUTATED 2 7 1 3 0
NBN WILD-TYPE 37 89 43 85 80
'NBN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.51

Table S3031.  Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NBN MUTATED 0 3 6 3 1
NBN WILD-TYPE 26 76 67 79 57
'NBN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0463 (Fisher's exact test), Q value = 0.14

Table S3032.  Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NBN MUTATED 5 5 0 3
NBN WILD-TYPE 122 46 71 66

Figure S1351.  Get High-res Image Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NBN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.72

Table S3033.  Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NBN MUTATED 2 3 4 5 1
NBN WILD-TYPE 82 82 81 64 46
'NBN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0059 (Fisher's exact test), Q value = 0.042

Table S3034.  Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NBN MUTATED 8 5 2 0
NBN WILD-TYPE 87 69 119 80

Figure S1352.  Get High-res Image Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NBN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.45

Table S3035.  Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NBN MUTATED 5 2 1 3 2 2
NBN WILD-TYPE 47 62 71 101 38 57
'NBN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 0.65

Table S3036.  Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NBN MUTATED 9 4 2
NBN WILD-TYPE 208 71 97
'NBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.65

Table S3037.  Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NBN MUTATED 7 3 3
NBN WILD-TYPE 114 105 69
'NBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S3038.  Gene #304: 'NBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NBN MUTATED 4 2 1 1 5
NBN WILD-TYPE 84 64 44 54 42
'ERBB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.0091

Table S3039.  Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ERBB3 MUTATED 10 24 1 0
ERBB3 WILD-TYPE 194 113 46 3

Figure S1353.  Get High-res Image Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERBB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.074

Table S3040.  Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ERBB3 MUTATED 3 15 4 4 2
ERBB3 WILD-TYPE 36 81 40 84 78

Figure S1354.  Get High-res Image Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ERBB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.18

Table S3041.  Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ERBB3 MUTATED 2 9 5 3 10
ERBB3 WILD-TYPE 24 70 68 79 48
'ERBB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00955 (Fisher's exact test), Q value = 0.055

Table S3042.  Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ERBB3 MUTATED 6 11 7 5
ERBB3 WILD-TYPE 121 40 64 64

Figure S1355.  Get High-res Image Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0443 (Fisher's exact test), Q value = 0.13

Table S3043.  Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ERBB3 MUTATED 4 8 15 5 2
ERBB3 WILD-TYPE 80 77 70 64 45

Figure S1356.  Get High-res Image Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ERBB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S3044.  Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ERBB3 MUTATED 9 8 4 13
ERBB3 WILD-TYPE 86 66 117 67

Figure S1357.  Get High-res Image Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0056 (Fisher's exact test), Q value = 0.041

Table S3045.  Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ERBB3 MUTATED 9 12 4 5 3 2
ERBB3 WILD-TYPE 43 52 68 99 37 57

Figure S1358.  Get High-res Image Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ERBB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.56

Table S3046.  Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ERBB3 MUTATED 23 6 6
ERBB3 WILD-TYPE 194 69 93
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.49

Table S3047.  Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ERBB3 MUTATED 13 6 7
ERBB3 WILD-TYPE 108 102 65
'ERBB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S3048.  Gene #305: 'ERBB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ERBB3 MUTATED 11 3 4 3 5
ERBB3 WILD-TYPE 77 63 41 52 42
'IPO5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0891 (Fisher's exact test), Q value = 0.2

Table S3049.  Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IPO5 MUTATED 9 12 0 0
IPO5 WILD-TYPE 195 125 47 3
'IPO5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S3050.  Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IPO5 MUTATED 4 9 1 3 0
IPO5 WILD-TYPE 35 87 43 85 80

Figure S1359.  Get High-res Image Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IPO5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 0.71

Table S3051.  Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IPO5 MUTATED 0 7 5 4 3
IPO5 WILD-TYPE 26 72 68 78 55
'IPO5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S3052.  Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IPO5 MUTATED 5 5 5 4
IPO5 WILD-TYPE 122 46 66 65
'IPO5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.4

Table S3053.  Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IPO5 MUTATED 4 9 3 2 3
IPO5 WILD-TYPE 80 76 82 67 44
'IPO5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.41

Table S3054.  Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IPO5 MUTATED 3 6 5 7
IPO5 WILD-TYPE 92 68 116 73
'IPO5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 0.89

Table S3055.  Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IPO5 MUTATED 2 5 4 7 1 2
IPO5 WILD-TYPE 50 59 68 97 39 57
'IPO5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.653 (Fisher's exact test), Q value = 0.73

Table S3056.  Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IPO5 MUTATED 14 3 4
IPO5 WILD-TYPE 203 72 95
'IPO5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.936 (Fisher's exact test), Q value = 0.97

Table S3057.  Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IPO5 MUTATED 6 4 3
IPO5 WILD-TYPE 115 104 69
'IPO5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 0.61

Table S3058.  Gene #306: 'IPO5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IPO5 MUTATED 4 1 1 4 3
IPO5 WILD-TYPE 84 65 44 51 44
'MARVELD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S3059.  Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MARVELD3 MUTATED 4 7 0 0
MARVELD3 WILD-TYPE 200 130 47 3
'MARVELD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00817 (Fisher's exact test), Q value = 0.05

Table S3060.  Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MARVELD3 MUTATED 0 8 0 2 0
MARVELD3 WILD-TYPE 39 88 44 86 80

Figure S1360.  Get High-res Image Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MARVELD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.777 (Fisher's exact test), Q value = 0.84

Table S3061.  Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MARVELD3 MUTATED 0 4 3 2 1
MARVELD3 WILD-TYPE 26 75 70 80 57
'MARVELD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 0.11

Table S3062.  Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MARVELD3 MUTATED 1 4 4 1
MARVELD3 WILD-TYPE 126 47 67 68

Figure S1361.  Get High-res Image Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MARVELD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.18

Table S3063.  Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MARVELD3 MUTATED 2 1 6 0 2
MARVELD3 WILD-TYPE 82 84 79 69 45
'MARVELD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.44

Table S3064.  Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MARVELD3 MUTATED 3 1 2 5
MARVELD3 WILD-TYPE 92 73 119 75
'MARVELD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.14

Table S3065.  Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MARVELD3 MUTATED 5 3 1 1 0 2
MARVELD3 WILD-TYPE 47 61 71 103 40 57
'MARVELD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.75

Table S3066.  Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MARVELD3 MUTATED 8 1 3
MARVELD3 WILD-TYPE 209 74 96
'MARVELD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.11

Table S3067.  Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MARVELD3 MUTATED 5 0 4
MARVELD3 WILD-TYPE 116 108 68

Figure S1362.  Get High-res Image Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MARVELD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.0081

Table S3068.  Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MARVELD3 MUTATED 0 0 2 1 6
MARVELD3 WILD-TYPE 88 66 43 54 41

Figure S1363.  Get High-res Image Gene #307: 'MARVELD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.19

Table S3069.  Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NOS3 MUTATED 4 10 1 0
NOS3 WILD-TYPE 200 127 46 3
'NOS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.26

Table S3070.  Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NOS3 MUTATED 1 6 1 0 3
NOS3 WILD-TYPE 38 90 43 88 77
'NOS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.13

Table S3071.  Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NOS3 MUTATED 2 6 3 0 1
NOS3 WILD-TYPE 24 73 70 82 57

Figure S1364.  Get High-res Image Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NOS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.13

Table S3072.  Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NOS3 MUTATED 4 5 3 0
NOS3 WILD-TYPE 123 46 68 69

Figure S1365.  Get High-res Image Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0467 (Fisher's exact test), Q value = 0.14

Table S3073.  Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NOS3 MUTATED 2 1 7 1 4
NOS3 WILD-TYPE 82 84 78 68 43

Figure S1366.  Get High-res Image Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00746 (Fisher's exact test), Q value = 0.048

Table S3074.  Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NOS3 MUTATED 3 1 2 9
NOS3 WILD-TYPE 92 73 119 71

Figure S1367.  Get High-res Image Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.12

Table S3075.  Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NOS3 MUTATED 4 6 2 1 0 2
NOS3 WILD-TYPE 48 58 70 103 40 57

Figure S1368.  Get High-res Image Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.5

Table S3076.  Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NOS3 MUTATED 11 1 3
NOS3 WILD-TYPE 206 74 96
'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.31

Table S3077.  Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NOS3 MUTATED 4 1 4
NOS3 WILD-TYPE 117 107 68
'NOS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S3078.  Gene #308: 'NOS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NOS3 MUTATED 3 0 1 1 4
NOS3 WILD-TYPE 85 66 44 54 43
'TAS2R42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.8

Table S3079.  Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TAS2R42 MUTATED 3 3 0 0
TAS2R42 WILD-TYPE 201 134 47 3
'TAS2R42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S3080.  Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TAS2R42 MUTATED 0 1 2 3 0
TAS2R42 WILD-TYPE 39 95 42 85 80
'TAS2R42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 0.83

Table S3081.  Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TAS2R42 MUTATED 0 2 0 1 1
TAS2R42 WILD-TYPE 26 77 73 81 57
'TAS2R42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.531 (Fisher's exact test), Q value = 0.63

Table S3082.  Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TAS2R42 MUTATED 1 0 1 2
TAS2R42 WILD-TYPE 126 51 70 67
'TAS2R42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 0.94

Table S3083.  Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TAS2R42 MUTATED 2 2 1 1 0
TAS2R42 WILD-TYPE 82 83 84 68 47
'TAS2R42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.73

Table S3084.  Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TAS2R42 MUTATED 1 2 1 2
TAS2R42 WILD-TYPE 94 72 120 78
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.39

Table S3085.  Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TAS2R42 MUTATED 0 1 2 0 1 2
TAS2R42 WILD-TYPE 52 63 70 104 39 57
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S3086.  Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TAS2R42 MUTATED 2 1 3
TAS2R42 WILD-TYPE 215 74 96
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S3087.  Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TAS2R42 MUTATED 3 0 2
TAS2R42 WILD-TYPE 118 108 70
'TAS2R42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.52

Table S3088.  Gene #309: 'TAS2R42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TAS2R42 MUTATED 2 0 0 1 2
TAS2R42 WILD-TYPE 86 66 45 54 45
'ANKRD20A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.5

Table S3089.  Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ANKRD20A4 MUTATED 2 4 1 0
ANKRD20A4 WILD-TYPE 202 133 46 3
'ANKRD20A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.11

Table S3090.  Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ANKRD20A4 MUTATED 0 6 0 1 0
ANKRD20A4 WILD-TYPE 39 90 44 87 80

Figure S1369.  Get High-res Image Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.57

Table S3091.  Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ANKRD20A4 MUTATED 0 3 2 0 1
ANKRD20A4 WILD-TYPE 26 76 71 82 57
'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.11

Table S3092.  Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ANKRD20A4 MUTATED 0 3 2 1
ANKRD20A4 WILD-TYPE 127 48 69 68

Figure S1370.  Get High-res Image Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0092 (Fisher's exact test), Q value = 0.054

Table S3093.  Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ANKRD20A4 MUTATED 0 1 2 0 4
ANKRD20A4 WILD-TYPE 84 84 83 69 43

Figure S1371.  Get High-res Image Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S3094.  Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ANKRD20A4 MUTATED 1 1 0 5
ANKRD20A4 WILD-TYPE 94 73 121 75

Figure S1372.  Get High-res Image Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S3095.  Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ANKRD20A4 MUTATED 3 0 2 2 0 0
ANKRD20A4 WILD-TYPE 49 64 70 102 40 59
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S3096.  Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ANKRD20A4 MUTATED 6 1 0
ANKRD20A4 WILD-TYPE 211 74 99
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S3097.  Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ANKRD20A4 MUTATED 4 1 1
ANKRD20A4 WILD-TYPE 117 107 71
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S3098.  Gene #310: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ANKRD20A4 MUTATED 3 1 0 0 2
ANKRD20A4 WILD-TYPE 85 65 45 55 45
'UGP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.014

Table S3099.  Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UGP2 MUTATED 0 9 0 0
UGP2 WILD-TYPE 204 128 47 3

Figure S1373.  Get High-res Image Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UGP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.14

Table S3100.  Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UGP2 MUTATED 0 6 1 0 1
UGP2 WILD-TYPE 39 90 43 88 79

Figure S1374.  Get High-res Image Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'UGP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S3101.  Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UGP2 MUTATED 0 4 2 0 2
UGP2 WILD-TYPE 26 75 71 82 56
'UGP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.072

Table S3102.  Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UGP2 MUTATED 1 4 3 0
UGP2 WILD-TYPE 126 47 68 69

Figure S1375.  Get High-res Image Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UGP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.021

Table S3103.  Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UGP2 MUTATED 0 0 6 0 2
UGP2 WILD-TYPE 84 85 79 69 45

Figure S1376.  Get High-res Image Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UGP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00495 (Fisher's exact test), Q value = 0.038

Table S3104.  Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UGP2 MUTATED 1 0 1 6
UGP2 WILD-TYPE 94 74 120 74

Figure S1377.  Get High-res Image Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UGP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S3105.  Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UGP2 MUTATED 4 2 1 2 0 0
UGP2 WILD-TYPE 48 62 71 102 40 59
'UGP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S3106.  Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UGP2 MUTATED 7 2 0
UGP2 WILD-TYPE 210 73 99
'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.51

Table S3107.  Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
UGP2 MUTATED 5 1 2
UGP2 WILD-TYPE 116 107 70
'UGP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.344 (Fisher's exact test), Q value = 0.47

Table S3108.  Gene #311: 'UGP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
UGP2 MUTATED 3 1 1 0 3
UGP2 WILD-TYPE 85 65 44 55 44
'KLHDC8B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S3109.  Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KLHDC8B MUTATED 2 6 2 0
KLHDC8B WILD-TYPE 202 131 45 3
'KLHDC8B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 0.068

Table S3110.  Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KLHDC8B MUTATED 2 4 3 0 0
KLHDC8B WILD-TYPE 37 92 41 88 80

Figure S1378.  Get High-res Image Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLHDC8B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S3111.  Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KLHDC8B MUTATED 1 3 4 0 2
KLHDC8B WILD-TYPE 25 76 69 82 56
'KLHDC8B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.72

Table S3112.  Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KLHDC8B MUTATED 4 3 2 1
KLHDC8B WILD-TYPE 123 48 69 68
'KLHDC8B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.59

Table S3113.  Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KLHDC8B MUTATED 1 3 4 1 0
KLHDC8B WILD-TYPE 83 82 81 68 47
'KLHDC8B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.43

Table S3114.  Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KLHDC8B MUTATED 2 2 1 4
KLHDC8B WILD-TYPE 93 72 120 76
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.8

Table S3115.  Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KLHDC8B MUTATED 3 1 2 3 0 1
KLHDC8B WILD-TYPE 49 63 70 101 40 58
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3116.  Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KLHDC8B MUTATED 6 2 2
KLHDC8B WILD-TYPE 211 73 97
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.8

Table S3117.  Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KLHDC8B MUTATED 2 1 2
KLHDC8B WILD-TYPE 119 107 70
'KLHDC8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.78

Table S3118.  Gene #312: 'KLHDC8B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KLHDC8B MUTATED 2 2 0 0 1
KLHDC8B WILD-TYPE 86 64 45 55 46
'ABCB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0068

Table S3119.  Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABCB6 MUTATED 0 11 1 0
ABCB6 WILD-TYPE 204 126 46 3

Figure S1379.  Get High-res Image Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.31

Table S3120.  Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABCB6 MUTATED 1 5 2 0 2
ABCB6 WILD-TYPE 38 91 42 88 78
'ABCB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S3121.  Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABCB6 MUTATED 1 5 2 0 2
ABCB6 WILD-TYPE 25 74 71 82 56
'ABCB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.6

Table S3122.  Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABCB6 MUTATED 3 2 4 1
ABCB6 WILD-TYPE 124 49 67 68
'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S3123.  Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABCB6 MUTATED 0 1 5 2 2
ABCB6 WILD-TYPE 84 84 80 67 45
'ABCB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.854 (Fisher's exact test), Q value = 0.9

Table S3124.  Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABCB6 MUTATED 3 1 3 3
ABCB6 WILD-TYPE 92 73 118 77
'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.015

Table S3125.  Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABCB6 MUTATED 1 6 5 0 0 0
ABCB6 WILD-TYPE 51 58 67 104 40 59

Figure S1380.  Get High-res Image Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.12

Table S3126.  Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABCB6 MUTATED 11 0 1
ABCB6 WILD-TYPE 206 75 98

Figure S1381.  Get High-res Image Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.071

Table S3127.  Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABCB6 MUTATED 5 0 5
ABCB6 WILD-TYPE 116 108 67

Figure S1382.  Get High-res Image Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ABCB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00502 (Fisher's exact test), Q value = 0.039

Table S3128.  Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABCB6 MUTATED 2 0 3 0 5
ABCB6 WILD-TYPE 86 66 42 55 42

Figure S1383.  Get High-res Image Gene #313: 'ABCB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.19

Table S3129.  Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMC4 MUTATED 4 10 1 0
TMC4 WILD-TYPE 200 127 46 3
'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 0.97

Table S3130.  Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TMC4 MUTATED 2 4 1 3 4
TMC4 WILD-TYPE 37 92 43 85 76
'TMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 0.83

Table S3131.  Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMC4 MUTATED 0 4 2 5 2
TMC4 WILD-TYPE 26 75 71 77 56
'TMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00152 (Fisher's exact test), Q value = 0.02

Table S3132.  Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMC4 MUTATED 0 4 3 6
TMC4 WILD-TYPE 127 47 68 63

Figure S1384.  Get High-res Image Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S3133.  Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMC4 MUTATED 1 4 5 2 0
TMC4 WILD-TYPE 83 81 80 67 47
'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.73 (Fisher's exact test), Q value = 0.8

Table S3134.  Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMC4 MUTATED 3 4 3 2
TMC4 WILD-TYPE 92 70 118 78
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.74

Table S3135.  Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMC4 MUTATED 2 4 3 5 0 1
TMC4 WILD-TYPE 50 60 69 99 40 58
'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.722 (Fisher's exact test), Q value = 0.79

Table S3136.  Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMC4 MUTATED 8 4 3
TMC4 WILD-TYPE 209 71 96
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.75

Table S3137.  Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TMC4 MUTATED 4 6 3
TMC4 WILD-TYPE 117 102 69
'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.992 (Fisher's exact test), Q value = 1

Table S3138.  Gene #314: 'TMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TMC4 MUTATED 3 3 2 3 2
TMC4 WILD-TYPE 85 63 43 52 45
'TM6SF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00214 (Fisher's exact test), Q value = 0.024

Table S3139.  Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TM6SF1 MUTATED 0 8 0 0
TM6SF1 WILD-TYPE 204 129 47 3

Figure S1385.  Get High-res Image Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TM6SF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.13

Table S3140.  Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TM6SF1 MUTATED 0 4 2 0 0
TM6SF1 WILD-TYPE 39 92 42 88 80

Figure S1386.  Get High-res Image Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TM6SF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S3141.  Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TM6SF1 MUTATED 0 3 4 1 0
TM6SF1 WILD-TYPE 26 76 69 81 58
'TM6SF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0545 (Fisher's exact test), Q value = 0.15

Table S3142.  Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TM6SF1 MUTATED 1 4 2 1
TM6SF1 WILD-TYPE 126 47 69 68
'TM6SF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0038 (Fisher's exact test), Q value = 0.033

Table S3143.  Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TM6SF1 MUTATED 0 0 5 0 2
TM6SF1 WILD-TYPE 84 85 80 69 45

Figure S1387.  Get High-res Image Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TM6SF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S3144.  Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TM6SF1 MUTATED 2 2 0 3
TM6SF1 WILD-TYPE 93 72 121 77
'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S3145.  Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TM6SF1 MUTATED 0 4 1 2 1 0
TM6SF1 WILD-TYPE 52 60 71 102 39 59
'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S3146.  Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TM6SF1 MUTATED 6 2 0
TM6SF1 WILD-TYPE 211 73 99
'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00644 (Fisher's exact test), Q value = 0.044

Table S3147.  Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TM6SF1 MUTATED 0 1 4
TM6SF1 WILD-TYPE 121 107 68

Figure S1388.  Get High-res Image Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TM6SF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.57

Table S3148.  Gene #315: 'TM6SF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TM6SF1 MUTATED 2 1 2 0 0
TM6SF1 WILD-TYPE 86 65 43 55 47
'ARID1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0073

Table S3149.  Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARID1B MUTATED 4 19 2 0
ARID1B WILD-TYPE 200 118 45 3

Figure S1389.  Get High-res Image Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARID1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.11

Table S3150.  Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARID1B MUTATED 1 10 3 1 2
ARID1B WILD-TYPE 38 86 41 87 78

Figure S1390.  Get High-res Image Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARID1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S3151.  Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARID1B MUTATED 1 10 6 2 4
ARID1B WILD-TYPE 25 69 67 80 54
'ARID1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.065

Table S3152.  Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARID1B MUTATED 5 8 8 2
ARID1B WILD-TYPE 122 43 63 67

Figure S1391.  Get High-res Image Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARID1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.11

Table S3153.  Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARID1B MUTATED 1 5 11 4 2
ARID1B WILD-TYPE 83 80 74 65 45

Figure S1392.  Get High-res Image Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARID1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S3154.  Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARID1B MUTATED 5 5 4 9
ARID1B WILD-TYPE 90 69 117 71
'ARID1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.057

Table S3155.  Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARID1B MUTATED 4 10 6 4 2 0
ARID1B WILD-TYPE 48 54 66 100 38 59

Figure S1393.  Get High-res Image Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00327 (Fisher's exact test), Q value = 0.031

Table S3156.  Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARID1B MUTATED 22 3 1
ARID1B WILD-TYPE 195 72 98

Figure S1394.  Get High-res Image Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.14

Table S3157.  Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARID1B MUTATED 8 1 5
ARID1B WILD-TYPE 113 107 67

Figure S1395.  Get High-res Image Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ARID1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00424 (Fisher's exact test), Q value = 0.035

Table S3158.  Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARID1B MUTATED 3 1 3 0 7
ARID1B WILD-TYPE 85 65 42 55 40

Figure S1396.  Get High-res Image Gene #316: 'ARID1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TNKS1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.066

Table S3159.  Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TNKS1BP1 MUTATED 7 17 2 0
TNKS1BP1 WILD-TYPE 197 120 45 3

Figure S1397.  Get High-res Image Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0096 (Fisher's exact test), Q value = 0.056

Table S3160.  Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TNKS1BP1 MUTATED 4 10 3 0 5
TNKS1BP1 WILD-TYPE 35 86 41 88 75

Figure S1398.  Get High-res Image Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S3161.  Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TNKS1BP1 MUTATED 2 8 4 2 7
TNKS1BP1 WILD-TYPE 24 71 69 80 51
'TNKS1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0041 (Fisher's exact test), Q value = 0.034

Table S3162.  Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TNKS1BP1 MUTATED 6 9 7 1
TNKS1BP1 WILD-TYPE 121 42 64 68

Figure S1399.  Get High-res Image Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TNKS1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.1

Table S3163.  Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TNKS1BP1 MUTATED 3 3 12 6 1
TNKS1BP1 WILD-TYPE 81 82 73 63 46

Figure S1400.  Get High-res Image Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNKS1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S3164.  Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TNKS1BP1 MUTATED 9 2 6 8
TNKS1BP1 WILD-TYPE 86 72 115 72
'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0581 (Fisher's exact test), Q value = 0.16

Table S3165.  Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TNKS1BP1 MUTATED 7 8 4 5 0 3
TNKS1BP1 WILD-TYPE 45 56 68 99 40 56
'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S3166.  Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TNKS1BP1 MUTATED 20 2 5
TNKS1BP1 WILD-TYPE 197 73 94
'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S3167.  Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TNKS1BP1 MUTATED 11 4 6
TNKS1BP1 WILD-TYPE 110 104 66
'TNKS1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S3168.  Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TNKS1BP1 MUTATED 7 0 4 3 7
TNKS1BP1 WILD-TYPE 81 66 41 52 40

Figure S1401.  Get High-res Image Gene #317: 'TNKS1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ERBB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00464 (Fisher's exact test), Q value = 0.037

Table S3169.  Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ERBB2 MUTATED 3 11 5 0
ERBB2 WILD-TYPE 201 126 42 3

Figure S1402.  Get High-res Image Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ERBB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00246 (Fisher's exact test), Q value = 0.026

Table S3170.  Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ERBB2 MUTATED 0 9 5 1 1
ERBB2 WILD-TYPE 39 87 39 87 79

Figure S1403.  Get High-res Image Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ERBB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.76

Table S3171.  Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ERBB2 MUTATED 1 5 3 2 4
ERBB2 WILD-TYPE 25 74 70 80 54
'ERBB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 0.67

Table S3172.  Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ERBB2 MUTATED 5 4 4 2
ERBB2 WILD-TYPE 122 47 67 67
'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.073

Table S3173.  Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ERBB2 MUTATED 0 3 9 4 2
ERBB2 WILD-TYPE 84 82 76 65 45

Figure S1404.  Get High-res Image Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ERBB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 0.74

Table S3174.  Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ERBB2 MUTATED 6 3 4 5
ERBB2 WILD-TYPE 89 71 117 75
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0052 (Fisher's exact test), Q value = 0.039

Table S3175.  Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ERBB2 MUTATED 5 7 4 1 2 0
ERBB2 WILD-TYPE 47 57 68 103 38 59

Figure S1405.  Get High-res Image Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ERBB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S3176.  Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ERBB2 MUTATED 15 2 2
ERBB2 WILD-TYPE 202 73 97
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 0.21

Table S3177.  Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ERBB2 MUTATED 4 3 7
ERBB2 WILD-TYPE 117 105 65
'ERBB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00792 (Fisher's exact test), Q value = 0.05

Table S3178.  Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ERBB2 MUTATED 6 0 5 0 3
ERBB2 WILD-TYPE 82 66 40 55 44

Figure S1406.  Get High-res Image Gene #318: 'ERBB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.022

Table S3179.  Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM70B MUTATED 1 11 1 0
FAM70B WILD-TYPE 203 126 46 3

Figure S1407.  Get High-res Image Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM70B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.073

Table S3180.  Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM70B MUTATED 1 7 0 0 1
FAM70B WILD-TYPE 38 89 44 88 79

Figure S1408.  Get High-res Image Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM70B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.66

Table S3181.  Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM70B MUTATED 1 4 2 1 3
FAM70B WILD-TYPE 25 75 71 81 55
'FAM70B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0988 (Fisher's exact test), Q value = 0.21

Table S3182.  Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM70B MUTATED 3 5 2 1
FAM70B WILD-TYPE 124 46 69 68
'FAM70B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0375 (Fisher's exact test), Q value = 0.12

Table S3183.  Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM70B MUTATED 0 2 6 1 3
FAM70B WILD-TYPE 84 83 79 68 44

Figure S1409.  Get High-res Image Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM70B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S3184.  Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM70B MUTATED 2 2 1 7
FAM70B WILD-TYPE 93 72 120 73

Figure S1410.  Get High-res Image Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S3185.  Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM70B MUTATED 3 4 4 2 0 0
FAM70B WILD-TYPE 49 60 68 102 40 59
'FAM70B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.13

Table S3186.  Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM70B MUTATED 11 2 0
FAM70B WILD-TYPE 206 73 99

Figure S1411.  Get High-res Image Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FAM70B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S3187.  Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM70B MUTATED 2 1 4
FAM70B WILD-TYPE 119 107 68
'FAM70B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S3188.  Gene #319: 'FAM70B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM70B MUTATED 2 1 1 0 3
FAM70B WILD-TYPE 86 65 44 55 44
'MYEOV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 0.029

Table S3189.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MYEOV MUTATED 0 8 1 0
MYEOV WILD-TYPE 204 129 46 3

Figure S1412.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYEOV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.079

Table S3190.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MYEOV MUTATED 1 6 1 0 0
MYEOV WILD-TYPE 38 90 43 88 80

Figure S1413.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYEOV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S3191.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MYEOV MUTATED 0 3 2 0 2
MYEOV WILD-TYPE 26 76 71 82 56
'MYEOV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.0079

Table S3192.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MYEOV MUTATED 0 5 2 0
MYEOV WILD-TYPE 127 46 69 69

Figure S1414.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0061 (Fisher's exact test), Q value = 0.043

Table S3193.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MYEOV MUTATED 0 0 6 1 2
MYEOV WILD-TYPE 84 85 79 68 45

Figure S1415.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MYEOV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00145 (Fisher's exact test), Q value = 0.019

Table S3194.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MYEOV MUTATED 3 0 0 6
MYEOV WILD-TYPE 92 74 121 74

Figure S1416.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.075

Table S3195.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MYEOV MUTATED 5 2 1 1 0 0
MYEOV WILD-TYPE 47 62 71 103 40 59

Figure S1417.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.1

Table S3196.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MYEOV MUTATED 9 0 0
MYEOV WILD-TYPE 208 75 99

Figure S1418.  Get High-res Image Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MYEOV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3197.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MYEOV MUTATED 3 2 2
MYEOV WILD-TYPE 118 106 70
'MYEOV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.14

Table S3198.  Gene #320: 'MYEOV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MYEOV MUTATED 4 0 0 0 3
MYEOV WILD-TYPE 84 66 45 55 44
'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S3199.  Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IRS1 MUTATED 0 18 3 0
IRS1 WILD-TYPE 204 119 44 3

Figure S1419.  Get High-res Image Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S3200.  Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IRS1 MUTATED 2 10 3 0 3
IRS1 WILD-TYPE 37 86 41 88 77

Figure S1420.  Get High-res Image Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.11

Table S3201.  Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IRS1 MUTATED 2 4 3 1 8
IRS1 WILD-TYPE 24 75 70 81 50

Figure S1421.  Get High-res Image Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0241 (Fisher's exact test), Q value = 0.094

Table S3202.  Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IRS1 MUTATED 5 8 3 2
IRS1 WILD-TYPE 122 43 68 67

Figure S1422.  Get High-res Image Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00661 (Fisher's exact test), Q value = 0.045

Table S3203.  Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IRS1 MUTATED 1 4 12 2 2
IRS1 WILD-TYPE 83 81 73 67 45

Figure S1423.  Get High-res Image Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.011

Table S3204.  Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IRS1 MUTATED 3 2 3 13
IRS1 WILD-TYPE 92 72 118 67

Figure S1424.  Get High-res Image Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00124 (Fisher's exact test), Q value = 0.018

Table S3205.  Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IRS1 MUTATED 7 8 2 4 0 0
IRS1 WILD-TYPE 45 56 70 100 40 59

Figure S1425.  Get High-res Image Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 0.025

Table S3206.  Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IRS1 MUTATED 18 3 0
IRS1 WILD-TYPE 199 72 99

Figure S1426.  Get High-res Image Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.16

Table S3207.  Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IRS1 MUTATED 7 2 7
IRS1 WILD-TYPE 114 106 65
'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0293 (Fisher's exact test), Q value = 0.11

Table S3208.  Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IRS1 MUTATED 6 1 4 0 5
IRS1 WILD-TYPE 82 65 41 55 42

Figure S1427.  Get High-res Image Gene #321: 'IRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WDR5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0712 (Fisher's exact test), Q value = 0.18

Table S3209.  Gene #322: 'WDR5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WDR5 MUTATED 0 4 1 0
WDR5 WILD-TYPE 204 133 46 3
'WDR5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3210.  Gene #322: 'WDR5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WDR5 MUTATED 0 1 1 2 1
WDR5 WILD-TYPE 26 78 72 80 57
'WDR5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0873 (Fisher's exact test), Q value = 0.2

Table S3211.  Gene #322: 'WDR5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WDR5 MUTATED 0 2 1 2
WDR5 WILD-TYPE 127 49 70 67
'WDR5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S3212.  Gene #322: 'WDR5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WDR5 MUTATED 1 2 0 1 1
WDR5 WILD-TYPE 83 83 85 68 46
'WDR5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.41

Table S3213.  Gene #322: 'WDR5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WDR5 MUTATED 2 2 0 1
WDR5 WILD-TYPE 93 72 121 79
'WDR5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.41

Table S3214.  Gene #322: 'WDR5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WDR5 MUTATED 0 3 1 1 0 0
WDR5 WILD-TYPE 52 61 71 103 40 59
'WDR5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3215.  Gene #322: 'WDR5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WDR5 MUTATED 3 1 1
WDR5 WILD-TYPE 214 74 98
'RPL22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.061

Table S3216.  Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RPL22 MUTATED 1 8 0 0
RPL22 WILD-TYPE 203 129 47 3

Figure S1428.  Get High-res Image Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RPL22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.69

Table S3217.  Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RPL22 MUTATED 1 3 2 1 1
RPL22 WILD-TYPE 38 93 42 87 79
'RPL22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.73

Table S3218.  Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RPL22 MUTATED 0 2 2 1 3
RPL22 WILD-TYPE 26 77 71 81 55
'RPL22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0058 (Fisher's exact test), Q value = 0.042

Table S3219.  Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RPL22 MUTATED 0 4 3 1
RPL22 WILD-TYPE 127 47 68 68

Figure S1429.  Get High-res Image Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RPL22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S3220.  Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RPL22 MUTATED 1 1 5 1 0
RPL22 WILD-TYPE 83 84 80 68 47
'RPL22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00251 (Fisher's exact test), Q value = 0.026

Table S3221.  Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RPL22 MUTATED 1 1 0 6
RPL22 WILD-TYPE 94 73 121 74

Figure S1430.  Get High-res Image Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RPL22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S3222.  Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RPL22 MUTATED 4 2 0 2 0 1
RPL22 WILD-TYPE 48 62 72 102 40 58
'RPL22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3223.  Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RPL22 MUTATED 5 2 2
RPL22 WILD-TYPE 212 73 97
'RPL22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3224.  Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RPL22 MUTATED 3 2 2
RPL22 WILD-TYPE 118 106 70
'RPL22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 0.88

Table S3225.  Gene #323: 'RPL22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RPL22 MUTATED 1 2 1 1 2
RPL22 WILD-TYPE 87 64 44 54 45
'DDX26B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S3226.  Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DDX26B MUTATED 5 7 0 0
DDX26B WILD-TYPE 199 130 47 3
'DDX26B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S3227.  Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DDX26B MUTATED 1 6 2 2 0
DDX26B WILD-TYPE 38 90 42 86 80
'DDX26B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.034 (Fisher's exact test), Q value = 0.11

Table S3228.  Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DDX26B MUTATED 0 6 1 0 1
DDX26B WILD-TYPE 26 73 72 82 57

Figure S1431.  Get High-res Image Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DDX26B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S3229.  Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DDX26B MUTATED 1 3 3 1
DDX26B WILD-TYPE 126 48 68 68
'DDX26B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.99 (Fisher's exact test), Q value = 1

Table S3230.  Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DDX26B MUTATED 3 2 3 2 1
DDX26B WILD-TYPE 81 83 82 67 46
'DDX26B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.79

Table S3231.  Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DDX26B MUTATED 2 2 3 4
DDX26B WILD-TYPE 93 72 118 76
'DDX26B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.62

Table S3232.  Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DDX26B MUTATED 3 2 2 1 2 2
DDX26B WILD-TYPE 49 62 70 103 38 57
'DDX26B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.63

Table S3233.  Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DDX26B MUTATED 9 1 2
DDX26B WILD-TYPE 208 74 97
'DDX26B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S3234.  Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DDX26B MUTATED 6 1 3
DDX26B WILD-TYPE 115 107 69
'DDX26B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0649 (Fisher's exact test), Q value = 0.17

Table S3235.  Gene #324: 'DDX26B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DDX26B MUTATED 3 1 0 1 5
DDX26B WILD-TYPE 85 65 45 54 42
'EPHX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.067

Table S3236.  Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EPHX1 MUTATED 1 8 1 0
EPHX1 WILD-TYPE 203 129 46 3

Figure S1432.  Get High-res Image Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S3237.  Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EPHX1 MUTATED 1 4 0 0 2
EPHX1 WILD-TYPE 38 92 44 88 78
'EPHX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S3238.  Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EPHX1 MUTATED 0 5 2 0 1
EPHX1 WILD-TYPE 26 74 71 82 57
'EPHX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00346 (Fisher's exact test), Q value = 0.032

Table S3239.  Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EPHX1 MUTATED 1 5 2 0
EPHX1 WILD-TYPE 126 46 69 69

Figure S1433.  Get High-res Image Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.14

Table S3240.  Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EPHX1 MUTATED 0 0 4 2 2
EPHX1 WILD-TYPE 84 85 81 67 45

Figure S1434.  Get High-res Image Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.18

Table S3241.  Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EPHX1 MUTATED 5 0 1 2
EPHX1 WILD-TYPE 90 74 120 78
'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00236 (Fisher's exact test), Q value = 0.025

Table S3242.  Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EPHX1 MUTATED 1 6 3 0 0 0
EPHX1 WILD-TYPE 51 58 69 104 40 59

Figure S1435.  Get High-res Image Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 0.19

Table S3243.  Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EPHX1 MUTATED 9 1 0
EPHX1 WILD-TYPE 208 74 99
'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00715 (Fisher's exact test), Q value = 0.047

Table S3244.  Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EPHX1 MUTATED 2 0 5
EPHX1 WILD-TYPE 119 108 67

Figure S1436.  Get High-res Image Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.006

Table S3245.  Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EPHX1 MUTATED 0 0 2 0 5
EPHX1 WILD-TYPE 88 66 43 55 42

Figure S1437.  Get High-res Image Gene #325: 'EPHX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CLMN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.023

Table S3246.  Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CLMN MUTATED 1 10 3 0
CLMN WILD-TYPE 203 127 44 3

Figure S1438.  Get High-res Image Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CLMN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.064

Table S3247.  Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CLMN MUTATED 2 6 1 0 0
CLMN WILD-TYPE 37 90 43 88 80

Figure S1439.  Get High-res Image Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLMN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.36

Table S3248.  Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CLMN MUTATED 0 6 2 1 3
CLMN WILD-TYPE 26 73 71 81 55
'CLMN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00775 (Fisher's exact test), Q value = 0.049

Table S3249.  Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CLMN MUTATED 1 6 3 2
CLMN WILD-TYPE 126 45 68 67

Figure S1440.  Get High-res Image Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CLMN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S3250.  Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CLMN MUTATED 0 4 6 2 1
CLMN WILD-TYPE 84 81 79 67 46
'CLMN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00424 (Fisher's exact test), Q value = 0.035

Table S3251.  Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CLMN MUTATED 3 3 0 7
CLMN WILD-TYPE 92 71 121 73

Figure S1441.  Get High-res Image Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLMN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S3252.  Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CLMN MUTATED 3 5 2 2 2 0
CLMN WILD-TYPE 49 59 70 102 38 59
'CLMN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0954 (Fisher's exact test), Q value = 0.21

Table S3253.  Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CLMN MUTATED 12 1 1
CLMN WILD-TYPE 205 74 98
'CLMN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.77

Table S3254.  Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CLMN MUTATED 5 2 2
CLMN WILD-TYPE 116 106 70
'CLMN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0638 (Fisher's exact test), Q value = 0.17

Table S3255.  Gene #326: 'CLMN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CLMN MUTATED 5 0 1 0 3
CLMN WILD-TYPE 83 66 44 55 44
'TRAM1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.084

Table S3256.  Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TRAM1L1 MUTATED 3 11 1 0
TRAM1L1 WILD-TYPE 201 126 46 3

Figure S1442.  Get High-res Image Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRAM1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00287 (Fisher's exact test), Q value = 0.029

Table S3257.  Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TRAM1L1 MUTATED 0 9 2 0 1
TRAM1L1 WILD-TYPE 39 87 42 88 79

Figure S1443.  Get High-res Image Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRAM1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.68

Table S3258.  Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TRAM1L1 MUTATED 0 3 5 3 1
TRAM1L1 WILD-TYPE 26 76 68 79 57
'TRAM1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.085

Table S3259.  Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TRAM1L1 MUTATED 2 6 2 2
TRAM1L1 WILD-TYPE 125 45 69 67

Figure S1444.  Get High-res Image Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S3260.  Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TRAM1L1 MUTATED 1 6 5 2 1
TRAM1L1 WILD-TYPE 83 79 80 67 46
'TRAM1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0692 (Fisher's exact test), Q value = 0.17

Table S3261.  Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TRAM1L1 MUTATED 4 4 1 6
TRAM1L1 WILD-TYPE 91 70 120 74
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.79

Table S3262.  Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TRAM1L1 MUTATED 2 5 2 3 1 2
TRAM1L1 WILD-TYPE 50 59 70 101 39 57
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.459 (Fisher's exact test), Q value = 0.57

Table S3263.  Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TRAM1L1 MUTATED 11 2 2
TRAM1L1 WILD-TYPE 206 73 97
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S3264.  Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TRAM1L1 MUTATED 3 3 6
TRAM1L1 WILD-TYPE 118 105 66
'TRAM1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.59

Table S3265.  Gene #327: 'TRAM1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TRAM1L1 MUTATED 3 1 2 2 4
TRAM1L1 WILD-TYPE 85 65 43 53 43
'EHMT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.54

Table S3266.  Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EHMT2 MUTATED 7 9 3 0
EHMT2 WILD-TYPE 197 128 44 3
'EHMT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.61

Table S3267.  Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EHMT2 MUTATED 1 8 1 3 3
EHMT2 WILD-TYPE 38 88 43 85 77
'EHMT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00357 (Fisher's exact test), Q value = 0.032

Table S3268.  Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EHMT2 MUTATED 3 6 4 0 0
EHMT2 WILD-TYPE 23 73 69 82 58

Figure S1445.  Get High-res Image Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EHMT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 0.14

Table S3269.  Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EHMT2 MUTATED 6 5 2 0
EHMT2 WILD-TYPE 121 46 69 69

Figure S1446.  Get High-res Image Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EHMT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.12

Table S3270.  Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EHMT2 MUTATED 5 0 6 6 1
EHMT2 WILD-TYPE 79 85 79 63 46

Figure S1447.  Get High-res Image Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EHMT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S3271.  Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EHMT2 MUTATED 8 1 4 5
EHMT2 WILD-TYPE 87 73 117 75
'EHMT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.67

Table S3272.  Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EHMT2 MUTATED 3 4 4 2 3 3
EHMT2 WILD-TYPE 49 60 68 102 37 56
'EHMT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.13

Table S3273.  Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EHMT2 MUTATED 12 0 7
EHMT2 WILD-TYPE 205 75 92

Figure S1448.  Get High-res Image Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EHMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S3274.  Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EHMT2 MUTATED 9 3 1
EHMT2 WILD-TYPE 112 105 71
'EHMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.078

Table S3275.  Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EHMT2 MUTATED 3 0 1 3 6
EHMT2 WILD-TYPE 85 66 44 52 41

Figure S1449.  Get High-res Image Gene #328: 'EHMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GALNTL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S3276.  Gene #329: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GALNTL1 MUTATED 2 7 1 0
GALNTL1 WILD-TYPE 202 130 46 3
'GALNTL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 0.88

Table S3277.  Gene #329: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GALNTL1 MUTATED 1 3 2 2 1
GALNTL1 WILD-TYPE 38 93 42 86 79
'GALNTL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 0.86

Table S3278.  Gene #329: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GALNTL1 MUTATED 0 2 3 2 3
GALNTL1 WILD-TYPE 26 77 70 80 55
'GALNTL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S3279.  Gene #329: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GALNTL1 MUTATED 2 4 1 3
GALNTL1 WILD-TYPE 125 47 70 66
'GALNTL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.63

Table S3280.  Gene #329: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GALNTL1 MUTATED 1 3 3 0 1
GALNTL1 WILD-TYPE 83 82 82 69 46
'GALNTL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S3281.  Gene #329: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GALNTL1 MUTATED 1 4 1 2
GALNTL1 WILD-TYPE 94 70 120 78
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S3282.  Gene #329: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GALNTL1 MUTATED 2 3 0 5 0 0
GALNTL1 WILD-TYPE 50 61 72 99 40 59
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.54

Table S3283.  Gene #329: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GALNTL1 MUTATED 6 3 1
GALNTL1 WILD-TYPE 211 72 98
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.64

Table S3284.  Gene #329: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GALNTL1 MUTATED 2 3 3
GALNTL1 WILD-TYPE 119 105 69
'GALNTL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 0.95

Table S3285.  Gene #329: 'GALNTL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GALNTL1 MUTATED 2 3 1 1 1
GALNTL1 WILD-TYPE 86 63 44 54 46
'DMXL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S3286.  Gene #330: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DMXL2 MUTATED 21 19 1 0
DMXL2 WILD-TYPE 183 118 46 3
'DMXL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.68

Table S3287.  Gene #330: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DMXL2 MUTATED 4 13 6 7 6
DMXL2 WILD-TYPE 35 83 38 81 74
'DMXL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.6

Table S3288.  Gene #330: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DMXL2 MUTATED 2 8 7 5 9
DMXL2 WILD-TYPE 24 71 66 77 49
'DMXL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0808 (Fisher's exact test), Q value = 0.19

Table S3289.  Gene #330: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DMXL2 MUTATED 12 10 4 5
DMXL2 WILD-TYPE 115 41 67 64
'DMXL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.57

Table S3290.  Gene #330: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DMXL2 MUTATED 8 12 11 7 2
DMXL2 WILD-TYPE 76 73 74 62 45
'DMXL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.85 (Fisher's exact test), Q value = 0.9

Table S3291.  Gene #330: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DMXL2 MUTATED 10 9 11 10
DMXL2 WILD-TYPE 85 65 110 70
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 0.74

Table S3292.  Gene #330: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DMXL2 MUTATED 6 7 11 10 2 5
DMXL2 WILD-TYPE 46 57 61 94 38 54
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.61

Table S3293.  Gene #330: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DMXL2 MUTATED 25 5 11
DMXL2 WILD-TYPE 192 70 88
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.68

Table S3294.  Gene #330: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DMXL2 MUTATED 14 12 5
DMXL2 WILD-TYPE 107 96 67
'DMXL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S3295.  Gene #330: 'DMXL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DMXL2 MUTATED 10 6 1 8 6
DMXL2 WILD-TYPE 78 60 44 47 41
'MIA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S3296.  Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MIA2 MUTATED 2 5 3 0
MIA2 WILD-TYPE 202 132 44 3
'MIA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.12

Table S3297.  Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MIA2 MUTATED 3 4 0 1 0
MIA2 WILD-TYPE 36 92 44 87 80

Figure S1450.  Get High-res Image Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MIA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.095

Table S3298.  Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MIA2 MUTATED 0 0 5 1 4
MIA2 WILD-TYPE 26 79 68 81 54

Figure S1451.  Get High-res Image Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MIA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S3299.  Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MIA2 MUTATED 1 8 1 0
MIA2 WILD-TYPE 126 43 70 69

Figure S1452.  Get High-res Image Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MIA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S3300.  Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MIA2 MUTATED 2 0 5 1 2
MIA2 WILD-TYPE 82 85 80 68 45
'MIA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.11

Table S3301.  Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MIA2 MUTATED 2 0 2 6
MIA2 WILD-TYPE 93 74 119 74

Figure S1453.  Get High-res Image Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MIA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S3302.  Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MIA2 MUTATED 3 3 1 0 1 2
MIA2 WILD-TYPE 49 61 71 104 39 57
'MIA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.46

Table S3303.  Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MIA2 MUTATED 7 0 3
MIA2 WILD-TYPE 210 75 96
'MIA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 0.2

Table S3304.  Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MIA2 MUTATED 5 0 2
MIA2 WILD-TYPE 116 108 70
'MIA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S3305.  Gene #331: 'MIA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MIA2 MUTATED 1 0 1 2 3
MIA2 WILD-TYPE 87 66 44 53 44
'NT5DC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00506 (Fisher's exact test), Q value = 0.039

Table S3306.  Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NT5DC1 MUTATED 0 7 1 0
NT5DC1 WILD-TYPE 204 130 46 3

Figure S1454.  Get High-res Image Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NT5DC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00409 (Fisher's exact test), Q value = 0.034

Table S3307.  Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NT5DC1 MUTATED 0 7 1 0 0
NT5DC1 WILD-TYPE 39 89 43 88 80

Figure S1455.  Get High-res Image Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NT5DC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.42

Table S3308.  Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NT5DC1 MUTATED 0 1 3 0 2
NT5DC1 WILD-TYPE 26 78 70 82 56
'NT5DC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00132 (Fisher's exact test), Q value = 0.018

Table S3309.  Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NT5DC1 MUTATED 0 4 0 2
NT5DC1 WILD-TYPE 127 47 71 67

Figure S1456.  Get High-res Image Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NT5DC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.098

Table S3310.  Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NT5DC1 MUTATED 0 3 5 0 0
NT5DC1 WILD-TYPE 84 82 80 69 47

Figure S1457.  Get High-res Image Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NT5DC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S3311.  Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NT5DC1 MUTATED 3 2 0 3
NT5DC1 WILD-TYPE 92 72 121 77
'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.12

Table S3312.  Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NT5DC1 MUTATED 3 2 1 0 2 0
NT5DC1 WILD-TYPE 49 62 71 104 38 59

Figure S1458.  Get High-res Image Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.6

Table S3313.  Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NT5DC1 MUTATED 6 0 2
NT5DC1 WILD-TYPE 211 75 97
'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.47

Table S3314.  Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NT5DC1 MUTATED 4 1 3
NT5DC1 WILD-TYPE 117 107 69
'NT5DC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.13

Table S3315.  Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NT5DC1 MUTATED 3 0 1 0 4
NT5DC1 WILD-TYPE 85 66 44 55 43

Figure S1459.  Get High-res Image Gene #332: 'NT5DC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SYCP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 0.18

Table S3316.  Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SYCP1 MUTATED 8 14 1 0
SYCP1 WILD-TYPE 196 123 46 3
'SYCP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S3317.  Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SYCP1 MUTATED 2 10 3 2 3
SYCP1 WILD-TYPE 37 86 41 86 77
'SYCP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.17

Table S3318.  Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SYCP1 MUTATED 1 9 5 1 2
SYCP1 WILD-TYPE 25 70 68 81 56
'SYCP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.062

Table S3319.  Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SYCP1 MUTATED 4 7 6 1
SYCP1 WILD-TYPE 123 44 65 68

Figure S1460.  Get High-res Image Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SYCP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S3320.  Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SYCP1 MUTATED 5 3 14 0 0
SYCP1 WILD-TYPE 79 82 71 69 47

Figure S1461.  Get High-res Image Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SYCP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S3321.  Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SYCP1 MUTATED 3 3 7 9
SYCP1 WILD-TYPE 92 71 114 71
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.22

Table S3322.  Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SYCP1 MUTATED 6 6 5 3 0 3
SYCP1 WILD-TYPE 46 58 67 101 40 56
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 0.99

Table S3323.  Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SYCP1 MUTATED 14 4 5
SYCP1 WILD-TYPE 203 71 94
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S3324.  Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SYCP1 MUTATED 5 6 7
SYCP1 WILD-TYPE 116 102 65
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S3325.  Gene #333: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SYCP1 MUTATED 6 3 5 1 3
SYCP1 WILD-TYPE 82 63 40 54 44
'ZNF878 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00403 (Fisher's exact test), Q value = 0.034

Table S3326.  Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF878 MUTATED 2 11 0 0
ZNF878 WILD-TYPE 202 126 47 3

Figure S1462.  Get High-res Image Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF878 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S3327.  Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF878 MUTATED 1 8 2 0 1
ZNF878 WILD-TYPE 38 88 42 88 79

Figure S1463.  Get High-res Image Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF878 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0724 (Fisher's exact test), Q value = 0.18

Table S3328.  Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF878 MUTATED 0 4 5 0 1
ZNF878 WILD-TYPE 26 75 68 82 57
'ZNF878 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.005

Table S3329.  Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF878 MUTATED 1 7 2 0
ZNF878 WILD-TYPE 126 44 69 69

Figure S1464.  Get High-res Image Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S3330.  Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF878 MUTATED 0 0 10 1 0
ZNF878 WILD-TYPE 84 85 75 68 47

Figure S1465.  Get High-res Image Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF878 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00107 (Fisher's exact test), Q value = 0.016

Table S3331.  Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF878 MUTATED 2 0 1 8
ZNF878 WILD-TYPE 93 74 120 72

Figure S1466.  Get High-res Image Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00224 (Fisher's exact test), Q value = 0.025

Table S3332.  Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF878 MUTATED 7 3 1 2 0 0
ZNF878 WILD-TYPE 45 61 71 102 40 59

Figure S1467.  Get High-res Image Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S3333.  Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF878 MUTATED 10 2 1
ZNF878 WILD-TYPE 207 73 98
'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.098

Table S3334.  Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF878 MUTATED 6 0 4
ZNF878 WILD-TYPE 115 108 68

Figure S1468.  Get High-res Image Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF878 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.26

Table S3335.  Gene #334: 'ZNF878 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF878 MUTATED 4 1 1 0 4
ZNF878 WILD-TYPE 84 65 44 55 43
'KIAA1009 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.1

Table S3336.  Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1009 MUTATED 3 10 3 0
KIAA1009 WILD-TYPE 201 127 44 3

Figure S1469.  Get High-res Image Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1009 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.12

Table S3337.  Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1009 MUTATED 1 10 1 2 1
KIAA1009 WILD-TYPE 38 86 43 86 79

Figure S1470.  Get High-res Image Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1009 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0918 (Fisher's exact test), Q value = 0.21

Table S3338.  Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1009 MUTATED 1 6 4 0 2
KIAA1009 WILD-TYPE 25 73 69 82 56
'KIAA1009 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00246 (Fisher's exact test), Q value = 0.026

Table S3339.  Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1009 MUTATED 1 6 5 1
KIAA1009 WILD-TYPE 126 45 66 68

Figure S1471.  Get High-res Image Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1009 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00786 (Fisher's exact test), Q value = 0.049

Table S3340.  Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1009 MUTATED 1 2 10 1 2
KIAA1009 WILD-TYPE 83 83 75 68 45

Figure S1472.  Get High-res Image Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1009 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00928 (Fisher's exact test), Q value = 0.055

Table S3341.  Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1009 MUTATED 4 1 2 9
KIAA1009 WILD-TYPE 91 73 119 71

Figure S1473.  Get High-res Image Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S3342.  Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1009 MUTATED 4 4 4 1 2 1
KIAA1009 WILD-TYPE 48 60 68 103 38 58
'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.41

Table S3343.  Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1009 MUTATED 12 1 3
KIAA1009 WILD-TYPE 205 74 96
'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S3344.  Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1009 MUTATED 4 3 6
KIAA1009 WILD-TYPE 117 105 66
'KIAA1009 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.13

Table S3345.  Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1009 MUTATED 4 0 3 1 5
KIAA1009 WILD-TYPE 84 66 42 54 42

Figure S1474.  Get High-res Image Gene #335: 'KIAA1009 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SENP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00177 (Fisher's exact test), Q value = 0.022

Table S3346.  Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SENP3 MUTATED 1 11 1 0
SENP3 WILD-TYPE 203 126 46 3

Figure S1475.  Get High-res Image Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SENP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.26

Table S3347.  Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SENP3 MUTATED 1 6 1 0 3
SENP3 WILD-TYPE 38 90 43 88 77
'SENP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.32

Table S3348.  Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SENP3 MUTATED 3 3 1 2 1
SENP3 WILD-TYPE 23 76 72 80 57
'SENP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.6

Table S3349.  Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SENP3 MUTATED 3 2 4 1
SENP3 WILD-TYPE 124 49 67 68
'SENP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.43

Table S3350.  Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SENP3 MUTATED 2 2 6 2 0
SENP3 WILD-TYPE 82 83 79 67 47
'SENP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.48

Table S3351.  Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SENP3 MUTATED 3 2 2 5
SENP3 WILD-TYPE 92 72 119 75
'SENP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S3352.  Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SENP3 MUTATED 4 3 2 3 0 1
SENP3 WILD-TYPE 48 61 70 101 40 58
'SENP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0893 (Fisher's exact test), Q value = 0.2

Table S3353.  Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SENP3 MUTATED 11 0 2
SENP3 WILD-TYPE 206 75 97
'SENP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.89

Table S3354.  Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SENP3 MUTATED 4 3 3
SENP3 WILD-TYPE 117 105 69
'SENP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S3355.  Gene #336: 'SENP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SENP3 MUTATED 3 1 2 0 4
SENP3 WILD-TYPE 85 65 43 55 43
'ERBB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S3356.  Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ERBB4 MUTATED 18 22 8 0
ERBB4 WILD-TYPE 186 115 39 3
'ERBB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00461 (Fisher's exact test), Q value = 0.037

Table S3357.  Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ERBB4 MUTATED 7 20 4 8 3
ERBB4 WILD-TYPE 32 76 40 80 77

Figure S1476.  Get High-res Image Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ERBB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 0.9

Table S3358.  Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ERBB4 MUTATED 3 12 13 10 7
ERBB4 WILD-TYPE 23 67 60 72 51
'ERBB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0019 (Fisher's exact test), Q value = 0.022

Table S3359.  Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ERBB4 MUTATED 14 15 4 12
ERBB4 WILD-TYPE 113 36 67 57

Figure S1477.  Get High-res Image Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.2

Table S3360.  Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ERBB4 MUTATED 8 10 14 5 11
ERBB4 WILD-TYPE 76 75 71 64 36
'ERBB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S3361.  Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ERBB4 MUTATED 14 8 11 15
ERBB4 WILD-TYPE 81 66 110 65
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.33

Table S3362.  Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ERBB4 MUTATED 11 11 6 9 5 7
ERBB4 WILD-TYPE 41 53 66 95 35 52
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.31

Table S3363.  Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ERBB4 MUTATED 32 5 12
ERBB4 WILD-TYPE 185 70 87
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.6

Table S3364.  Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ERBB4 MUTATED 20 12 9
ERBB4 WILD-TYPE 101 96 63
'ERBB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.096

Table S3365.  Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ERBB4 MUTATED 14 3 5 7 12
ERBB4 WILD-TYPE 74 63 40 48 35

Figure S1478.  Get High-res Image Gene #337: 'ERBB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00273 (Fisher's exact test), Q value = 0.028

Table S3366.  Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
COL12A1 MUTATED 16 30 6 0
COL12A1 WILD-TYPE 188 107 41 3

Figure S1479.  Get High-res Image Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'COL12A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 0.022

Table S3367.  Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
COL12A1 MUTATED 3 24 5 7 5
COL12A1 WILD-TYPE 36 72 39 81 75

Figure S1480.  Get High-res Image Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL12A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S3368.  Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
COL12A1 MUTATED 4 15 5 6 13
COL12A1 WILD-TYPE 22 64 68 76 45

Figure S1481.  Get High-res Image Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'COL12A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 0.12

Table S3369.  Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
COL12A1 MUTATED 13 13 11 6
COL12A1 WILD-TYPE 114 38 60 63

Figure S1482.  Get High-res Image Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 0.17

Table S3370.  Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
COL12A1 MUTATED 6 8 18 9 8
COL12A1 WILD-TYPE 78 77 67 60 39
'COL12A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S3371.  Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
COL12A1 MUTATED 13 5 15 16
COL12A1 WILD-TYPE 82 69 106 64
'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00282 (Fisher's exact test), Q value = 0.028

Table S3372.  Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
COL12A1 MUTATED 11 17 8 7 6 4
COL12A1 WILD-TYPE 41 47 64 97 34 55

Figure S1483.  Get High-res Image Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0866 (Fisher's exact test), Q value = 0.2

Table S3373.  Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
COL12A1 MUTATED 36 5 12
COL12A1 WILD-TYPE 181 70 87
'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.082

Table S3374.  Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
COL12A1 MUTATED 13 12 18
COL12A1 WILD-TYPE 108 96 54

Figure S1484.  Get High-res Image Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'COL12A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0062 (Fisher's exact test), Q value = 0.043

Table S3375.  Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
COL12A1 MUTATED 10 4 9 6 14
COL12A1 WILD-TYPE 78 62 36 49 33

Figure S1485.  Get High-res Image Gene #338: 'COL12A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S3376.  Gene #339: 'PANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PANK1 MUTATED 2 7 1 0
PANK1 WILD-TYPE 202 130 46 3
'PANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S3377.  Gene #339: 'PANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PANK1 MUTATED 1 3 3 0 1
PANK1 WILD-TYPE 38 93 41 88 79
'PANK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.62

Table S3378.  Gene #339: 'PANK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PANK1 MUTATED 0 3 1 1 3
PANK1 WILD-TYPE 26 76 72 81 55
'PANK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S3379.  Gene #339: 'PANK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PANK1 MUTATED 1 3 2 2
PANK1 WILD-TYPE 126 48 69 67
'PANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.37

Table S3380.  Gene #339: 'PANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PANK1 MUTATED 0 3 4 1 2
PANK1 WILD-TYPE 84 82 81 68 45
'PANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.6

Table S3381.  Gene #339: 'PANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PANK1 MUTATED 3 1 2 4
PANK1 WILD-TYPE 92 73 119 76
'PANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.54

Table S3382.  Gene #339: 'PANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PANK1 MUTATED 1 4 2 2 1 0
PANK1 WILD-TYPE 51 60 70 102 39 59
'PANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.71

Table S3383.  Gene #339: 'PANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PANK1 MUTATED 7 2 1
PANK1 WILD-TYPE 210 73 98
'PANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.69

Table S3384.  Gene #339: 'PANK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PANK1 MUTATED 3 2 3
PANK1 WILD-TYPE 118 106 69
'PANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 0.61

Table S3385.  Gene #339: 'PANK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PANK1 MUTATED 4 1 1 0 2
PANK1 WILD-TYPE 84 65 44 55 45
'SNRNP35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.092

Table S3386.  Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SNRNP35 MUTATED 0 4 2 0
SNRNP35 WILD-TYPE 204 133 45 3

Figure S1486.  Get High-res Image Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SNRNP35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.17

Table S3387.  Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SNRNP35 MUTATED 0 4 0 0 0
SNRNP35 WILD-TYPE 39 92 44 88 80
'SNRNP35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.21

Table S3388.  Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SNRNP35 MUTATED 1 1 0 0 2
SNRNP35 WILD-TYPE 25 78 73 82 56
'SNRNP35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S3389.  Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SNRNP35 MUTATED 2 2 0 0
SNRNP35 WILD-TYPE 125 49 71 69
'SNRNP35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.47

Table S3390.  Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SNRNP35 MUTATED 1 0 2 1 2
SNRNP35 WILD-TYPE 83 85 83 68 45
'SNRNP35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.13

Table S3391.  Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SNRNP35 MUTATED 3 0 0 3
SNRNP35 WILD-TYPE 92 74 121 77

Figure S1487.  Get High-res Image Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S3392.  Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SNRNP35 MUTATED 3 1 1 0 0 1
SNRNP35 WILD-TYPE 49 63 71 104 40 58
'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.65

Table S3393.  Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SNRNP35 MUTATED 5 0 1
SNRNP35 WILD-TYPE 212 75 98
'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.57

Table S3394.  Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SNRNP35 MUTATED 2 0 1
SNRNP35 WILD-TYPE 119 108 71
'SNRNP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00675 (Fisher's exact test), Q value = 0.045

Table S3395.  Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SNRNP35 MUTATED 0 0 0 0 3
SNRNP35 WILD-TYPE 88 66 45 55 44

Figure S1488.  Get High-res Image Gene #340: 'SNRNP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTPN4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.075

Table S3396.  Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTPN4 MUTATED 2 9 0 0
PTPN4 WILD-TYPE 202 128 47 3

Figure S1489.  Get High-res Image Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPN4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.4

Table S3397.  Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTPN4 MUTATED 1 3 2 0 1
PTPN4 WILD-TYPE 38 93 42 88 79
'PTPN4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S3398.  Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTPN4 MUTATED 1 3 0 2 3
PTPN4 WILD-TYPE 25 76 73 80 55
'PTPN4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S3399.  Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTPN4 MUTATED 2 4 1 2
PTPN4 WILD-TYPE 125 47 70 67
'PTPN4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.44

Table S3400.  Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTPN4 MUTATED 2 3 5 0 1
PTPN4 WILD-TYPE 82 82 80 69 46
'PTPN4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S3401.  Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTPN4 MUTATED 3 2 0 6
PTPN4 WILD-TYPE 92 72 121 74

Figure S1490.  Get High-res Image Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPN4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.1

Table S3402.  Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTPN4 MUTATED 3 5 0 1 2 1
PTPN4 WILD-TYPE 49 59 72 103 38 58

Figure S1491.  Get High-res Image Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTPN4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S3403.  Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTPN4 MUTATED 10 1 1
PTPN4 WILD-TYPE 207 74 98
'PTPN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.6

Table S3404.  Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTPN4 MUTATED 4 1 2
PTPN4 WILD-TYPE 117 107 70
'PTPN4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0557 (Fisher's exact test), Q value = 0.15

Table S3405.  Gene #341: 'PTPN4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTPN4 MUTATED 5 0 0 0 2
PTPN4 WILD-TYPE 83 66 45 55 45
'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S3406.  Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TNFRSF9 MUTATED 2 7 1 0
TNFRSF9 WILD-TYPE 202 130 46 3
'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.57

Table S3407.  Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TNFRSF9 MUTATED 1 5 1 1 1
TNFRSF9 WILD-TYPE 38 91 43 87 79
'TNFRSF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S3408.  Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TNFRSF9 MUTATED 1 4 0 2 1
TNFRSF9 WILD-TYPE 25 75 73 80 57
'TNFRSF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S3409.  Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TNFRSF9 MUTATED 1 2 3 2
TNFRSF9 WILD-TYPE 126 49 68 67
'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00048 (Fisher's exact test), Q value = 0.01

Table S3410.  Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TNFRSF9 MUTATED 0 0 7 0 2
TNFRSF9 WILD-TYPE 84 85 78 69 45

Figure S1492.  Get High-res Image Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0218 (Fisher's exact test), Q value = 0.089

Table S3411.  Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TNFRSF9 MUTATED 1 1 1 6
TNFRSF9 WILD-TYPE 94 73 120 74

Figure S1493.  Get High-res Image Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.53

Table S3412.  Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TNFRSF9 MUTATED 1 4 2 2 1 0
TNFRSF9 WILD-TYPE 51 60 70 102 39 59
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S3413.  Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TNFRSF9 MUTATED 8 2 0
TNFRSF9 WILD-TYPE 209 73 99
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.41

Table S3414.  Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TNFRSF9 MUTATED 2 2 4
TNFRSF9 WILD-TYPE 119 106 68
'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.086

Table S3415.  Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TNFRSF9 MUTATED 5 0 3 0 0
TNFRSF9 WILD-TYPE 83 66 42 55 47

Figure S1494.  Get High-res Image Gene #342: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SIGLEC10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S3416.  Gene #343: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SIGLEC10 MUTATED 3 8 2 0
SIGLEC10 WILD-TYPE 201 129 45 3
'SIGLEC10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.294 (Fisher's exact test), Q value = 0.42

Table S3417.  Gene #343: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SIGLEC10 MUTATED 3 5 1 1 2
SIGLEC10 WILD-TYPE 36 91 43 87 78
'SIGLEC10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S3418.  Gene #343: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SIGLEC10 MUTATED 1 0 2 4 3
SIGLEC10 WILD-TYPE 25 79 71 78 55
'SIGLEC10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S3419.  Gene #343: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SIGLEC10 MUTATED 2 3 1 4
SIGLEC10 WILD-TYPE 125 48 70 65
'SIGLEC10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S3420.  Gene #343: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SIGLEC10 MUTATED 2 2 6 3 0
SIGLEC10 WILD-TYPE 82 83 79 66 47
'SIGLEC10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 0.93

Table S3421.  Gene #343: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SIGLEC10 MUTATED 3 2 4 4
SIGLEC10 WILD-TYPE 92 72 117 76
'SIGLEC10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.82

Table S3422.  Gene #343: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SIGLEC10 MUTATED 2 2 4 4 0 1
SIGLEC10 WILD-TYPE 50 62 68 100 40 58
'SIGLEC10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S3423.  Gene #343: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SIGLEC10 MUTATED 9 3 1
SIGLEC10 WILD-TYPE 208 72 98
'SIGLEC10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.89

Table S3424.  Gene #343: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SIGLEC10 MUTATED 4 3 3
SIGLEC10 WILD-TYPE 117 105 69
'SIGLEC10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.72

Table S3425.  Gene #343: 'SIGLEC10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SIGLEC10 MUTATED 4 1 1 1 3
SIGLEC10 WILD-TYPE 84 65 44 54 44
'HTR7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S3426.  Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HTR7 MUTATED 3 10 1 0
HTR7 WILD-TYPE 201 127 46 3

Figure S1495.  Get High-res Image Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HTR7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.043 (Fisher's exact test), Q value = 0.13

Table S3427.  Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HTR7 MUTATED 0 7 2 2 0
HTR7 WILD-TYPE 39 89 42 86 80

Figure S1496.  Get High-res Image Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HTR7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S3428.  Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HTR7 MUTATED 0 5 3 0 3
HTR7 WILD-TYPE 26 74 70 82 55
'HTR7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00812 (Fisher's exact test), Q value = 0.05

Table S3429.  Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HTR7 MUTATED 3 6 2 0
HTR7 WILD-TYPE 124 45 69 69

Figure S1497.  Get High-res Image Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HTR7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0463 (Fisher's exact test), Q value = 0.14

Table S3430.  Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HTR7 MUTATED 0 2 7 2 2
HTR7 WILD-TYPE 84 83 78 67 45

Figure S1498.  Get High-res Image Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HTR7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 0.15

Table S3431.  Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HTR7 MUTATED 3 1 2 7
HTR7 WILD-TYPE 92 73 119 73
'HTR7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.58

Table S3432.  Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HTR7 MUTATED 1 3 5 2 2 1
HTR7 WILD-TYPE 51 61 67 102 38 58
'HTR7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.45

Table S3433.  Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HTR7 MUTATED 11 1 2
HTR7 WILD-TYPE 206 74 97
'HTR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.72

Table S3434.  Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HTR7 MUTATED 4 2 3
HTR7 WILD-TYPE 117 106 69
'HTR7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S3435.  Gene #344: 'HTR7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HTR7 MUTATED 3 1 1 1 3
HTR7 WILD-TYPE 85 65 44 54 44
'OBSCN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.0086

Table S3436.  Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OBSCN MUTATED 31 47 11 0
OBSCN WILD-TYPE 173 90 36 3

Figure S1499.  Get High-res Image Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OBSCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00697 (Fisher's exact test), Q value = 0.046

Table S3437.  Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OBSCN MUTATED 8 35 11 13 14
OBSCN WILD-TYPE 31 61 33 75 66

Figure S1500.  Get High-res Image Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OBSCN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.17

Table S3438.  Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OBSCN MUTATED 3 22 12 13 18
OBSCN WILD-TYPE 23 57 61 69 40
'OBSCN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00187 (Fisher's exact test), Q value = 0.022

Table S3439.  Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OBSCN MUTATED 20 21 17 10
OBSCN WILD-TYPE 107 30 54 59

Figure S1501.  Get High-res Image Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OBSCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S3440.  Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OBSCN MUTATED 15 19 27 15 8
OBSCN WILD-TYPE 69 66 58 54 39
'OBSCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0741 (Fisher's exact test), Q value = 0.18

Table S3441.  Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OBSCN MUTATED 20 15 22 27
OBSCN WILD-TYPE 75 59 99 53
'OBSCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S3442.  Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OBSCN MUTATED 15 17 21 17 10 10
OBSCN WILD-TYPE 37 47 51 87 30 49
'OBSCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0559 (Fisher's exact test), Q value = 0.15

Table S3443.  Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OBSCN MUTATED 58 10 22
OBSCN WILD-TYPE 159 65 77
'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.49

Table S3444.  Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OBSCN MUTATED 32 20 16
OBSCN WILD-TYPE 89 88 56
'OBSCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00361 (Fisher's exact test), Q value = 0.033

Table S3445.  Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OBSCN MUTATED 22 8 7 11 20
OBSCN WILD-TYPE 66 58 38 44 27

Figure S1502.  Get High-res Image Gene #345: 'OBSCN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GAB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S3446.  Gene #346: 'GAB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GAB2 MUTATED 5 6 0 0
GAB2 WILD-TYPE 199 131 47 3
'GAB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.3

Table S3447.  Gene #346: 'GAB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GAB2 MUTATED 0 5 2 3 0
GAB2 WILD-TYPE 39 91 42 85 80
'GAB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S3448.  Gene #346: 'GAB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GAB2 MUTATED 1 4 1 2 0
GAB2 WILD-TYPE 25 75 72 80 58
'GAB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S3449.  Gene #346: 'GAB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GAB2 MUTATED 1 3 3 1
GAB2 WILD-TYPE 126 48 68 68
'GAB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.63

Table S3450.  Gene #346: 'GAB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GAB2 MUTATED 4 1 4 1 1
GAB2 WILD-TYPE 80 84 81 68 46
'GAB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S3451.  Gene #346: 'GAB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GAB2 MUTATED 2 2 2 5
GAB2 WILD-TYPE 93 72 119 75
'GAB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S3452.  Gene #346: 'GAB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GAB2 MUTATED 4 1 3 1 0 2
GAB2 WILD-TYPE 48 63 69 103 40 57
'GAB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S3453.  Gene #346: 'GAB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GAB2 MUTATED 8 1 2
GAB2 WILD-TYPE 209 74 97
'GAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.67

Table S3454.  Gene #346: 'GAB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GAB2 MUTATED 5 3 1
GAB2 WILD-TYPE 116 105 71
'GAB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S3455.  Gene #346: 'GAB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GAB2 MUTATED 3 0 1 2 3
GAB2 WILD-TYPE 85 66 44 53 44
'SLC12A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.0092

Table S3456.  Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC12A7 MUTATED 3 17 3 0
SLC12A7 WILD-TYPE 201 120 44 3

Figure S1503.  Get High-res Image Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC12A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00533 (Fisher's exact test), Q value = 0.04

Table S3457.  Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC12A7 MUTATED 1 14 1 2 3
SLC12A7 WILD-TYPE 38 82 43 86 77

Figure S1504.  Get High-res Image Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC12A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S3458.  Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC12A7 MUTATED 2 7 3 0 4
SLC12A7 WILD-TYPE 24 72 70 82 54

Figure S1505.  Get High-res Image Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SLC12A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00657 (Fisher's exact test), Q value = 0.045

Table S3459.  Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC12A7 MUTATED 3 8 3 2
SLC12A7 WILD-TYPE 124 43 68 67

Figure S1506.  Get High-res Image Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC12A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0946 (Fisher's exact test), Q value = 0.21

Table S3460.  Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC12A7 MUTATED 3 4 11 4 1
SLC12A7 WILD-TYPE 81 81 74 65 46
'SLC12A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.051 (Fisher's exact test), Q value = 0.15

Table S3461.  Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC12A7 MUTATED 8 3 3 9
SLC12A7 WILD-TYPE 87 71 118 71
'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S3462.  Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC12A7 MUTATED 7 6 3 4 2 2
SLC12A7 WILD-TYPE 45 58 69 100 38 57
'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S3463.  Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC12A7 MUTATED 16 2 6
SLC12A7 WILD-TYPE 201 73 93
'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.49

Table S3464.  Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC12A7 MUTATED 8 4 6
SLC12A7 WILD-TYPE 113 104 66
'SLC12A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00256 (Fisher's exact test), Q value = 0.027

Table S3465.  Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC12A7 MUTATED 4 1 3 1 9
SLC12A7 WILD-TYPE 84 65 42 54 38

Figure S1507.  Get High-res Image Gene #347: 'SLC12A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA1522 MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.011

Table S3466.  Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1522 MUTATED 0 9 3 0
KIAA1522 WILD-TYPE 204 128 44 3

Figure S1508.  Get High-res Image Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1522 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.12

Table S3467.  Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1522 MUTATED 1 6 3 0 1
KIAA1522 WILD-TYPE 38 90 41 88 79

Figure S1509.  Get High-res Image Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1522 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00973 (Fisher's exact test), Q value = 0.056

Table S3468.  Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1522 MUTATED 2 3 0 0 4
KIAA1522 WILD-TYPE 24 76 73 82 54

Figure S1510.  Get High-res Image Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIAA1522 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S3469.  Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1522 MUTATED 2 5 2 0
KIAA1522 WILD-TYPE 125 46 69 69

Figure S1511.  Get High-res Image Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1522 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.18

Table S3470.  Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1522 MUTATED 1 2 6 0 2
KIAA1522 WILD-TYPE 83 83 79 69 45
'KIAA1522 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S3471.  Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1522 MUTATED 2 1 2 6
KIAA1522 WILD-TYPE 93 73 119 74
'KIAA1522 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.79

Table S3472.  Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1522 MUTATED 1 3 4 2 1 1
KIAA1522 WILD-TYPE 51 61 68 102 39 58
'KIAA1522 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.63

Table S3473.  Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1522 MUTATED 9 1 2
KIAA1522 WILD-TYPE 208 74 97
'KIAA1522 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.2

Table S3474.  Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1522 MUTATED 3 2 6
KIAA1522 WILD-TYPE 118 106 66
'KIAA1522 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 0.21

Table S3475.  Gene #348: 'KIAA1522 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1522 MUTATED 3 1 3 0 4
KIAA1522 WILD-TYPE 85 65 42 55 43
'FERMT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S3476.  Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FERMT2 MUTATED 4 8 0 0
FERMT2 WILD-TYPE 200 129 47 3
'FERMT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0071 (Fisher's exact test), Q value = 0.047

Table S3477.  Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FERMT2 MUTATED 1 8 0 1 0
FERMT2 WILD-TYPE 38 88 44 87 80

Figure S1512.  Get High-res Image Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FERMT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S3478.  Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FERMT2 MUTATED 0 3 2 0 4
FERMT2 WILD-TYPE 26 76 71 82 54
'FERMT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S3479.  Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FERMT2 MUTATED 0 8 1 0
FERMT2 WILD-TYPE 127 43 70 69

Figure S1513.  Get High-res Image Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FERMT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.16

Table S3480.  Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FERMT2 MUTATED 1 1 7 1 2
FERMT2 WILD-TYPE 83 84 78 68 45
'FERMT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.069

Table S3481.  Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FERMT2 MUTATED 3 0 2 7
FERMT2 WILD-TYPE 92 74 119 73

Figure S1514.  Get High-res Image Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S3482.  Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FERMT2 MUTATED 3 3 4 1 1 0
FERMT2 WILD-TYPE 49 61 68 103 39 59
'FERMT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00492 (Fisher's exact test), Q value = 0.038

Table S3483.  Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FERMT2 MUTATED 12 0 0
FERMT2 WILD-TYPE 205 75 99

Figure S1515.  Get High-res Image Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.13

Table S3484.  Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FERMT2 MUTATED 8 1 1
FERMT2 WILD-TYPE 113 107 71

Figure S1516.  Get High-res Image Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FERMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.063

Table S3485.  Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FERMT2 MUTATED 4 0 1 0 5
FERMT2 WILD-TYPE 84 66 44 55 42

Figure S1517.  Get High-res Image Gene #349: 'FERMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPP1R13B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0354 (Fisher's exact test), Q value = 0.12

Table S3486.  Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PPP1R13B MUTATED 4 10 0 0
PPP1R13B WILD-TYPE 200 127 47 3

Figure S1518.  Get High-res Image Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPP1R13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.545 (Fisher's exact test), Q value = 0.65

Table S3487.  Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PPP1R13B MUTATED 1 5 2 1 2
PPP1R13B WILD-TYPE 38 91 42 87 78
'PPP1R13B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S3488.  Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PPP1R13B MUTATED 2 5 1 1 1
PPP1R13B WILD-TYPE 24 74 72 81 57
'PPP1R13B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S3489.  Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PPP1R13B MUTATED 4 0 5 1
PPP1R13B WILD-TYPE 123 51 66 68
'PPP1R13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S3490.  Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PPP1R13B MUTATED 1 2 6 4 1
PPP1R13B WILD-TYPE 83 83 79 65 46
'PPP1R13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S3491.  Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PPP1R13B MUTATED 6 2 3 3
PPP1R13B WILD-TYPE 89 72 118 77
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.2

Table S3492.  Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PPP1R13B MUTATED 3 6 2 1 1 1
PPP1R13B WILD-TYPE 49 58 70 103 39 58
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.45

Table S3493.  Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PPP1R13B MUTATED 11 1 2
PPP1R13B WILD-TYPE 206 74 97
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 0.17

Table S3494.  Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PPP1R13B MUTATED 4 1 5
PPP1R13B WILD-TYPE 117 107 67
'PPP1R13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S3495.  Gene #350: 'PPP1R13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PPP1R13B MUTATED 3 0 4 1 2
PPP1R13B WILD-TYPE 85 66 41 54 45
'KIAA0240 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.091

Table S3496.  Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA0240 MUTATED 3 10 0 0
KIAA0240 WILD-TYPE 201 127 47 3

Figure S1519.  Get High-res Image Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0240 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 0.87

Table S3497.  Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA0240 MUTATED 0 4 1 2 3
KIAA0240 WILD-TYPE 39 92 43 86 77
'KIAA0240 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.39

Table S3498.  Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA0240 MUTATED 1 4 2 0 2
KIAA0240 WILD-TYPE 25 75 71 82 56
'KIAA0240 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0381 (Fisher's exact test), Q value = 0.12

Table S3499.  Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA0240 MUTATED 2 4 3 0
KIAA0240 WILD-TYPE 125 47 68 69

Figure S1520.  Get High-res Image Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 0.86

Table S3500.  Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA0240 MUTATED 2 3 5 2 1
KIAA0240 WILD-TYPE 82 82 80 67 46
'KIAA0240 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.59

Table S3501.  Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA0240 MUTATED 3 1 4 5
KIAA0240 WILD-TYPE 92 73 117 75
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S3502.  Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA0240 MUTATED 3 5 1 3 0 1
KIAA0240 WILD-TYPE 49 59 71 101 40 58
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S3503.  Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA0240 MUTATED 8 2 3
KIAA0240 WILD-TYPE 209 73 96
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 0.95

Table S3504.  Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA0240 MUTATED 3 4 2
KIAA0240 WILD-TYPE 118 104 70
'KIAA0240 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.552 (Fisher's exact test), Q value = 0.65

Table S3505.  Gene #351: 'KIAA0240 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA0240 MUTATED 2 1 2 1 3
KIAA0240 WILD-TYPE 86 65 43 54 44
'TP53BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0204 (Fisher's exact test), Q value = 0.085

Table S3506.  Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TP53BP1 MUTATED 5 14 3 0
TP53BP1 WILD-TYPE 199 123 44 3

Figure S1521.  Get High-res Image Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TP53BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 0.72

Table S3507.  Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TP53BP1 MUTATED 2 8 2 3 3
TP53BP1 WILD-TYPE 37 88 42 85 77
'TP53BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S3508.  Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TP53BP1 MUTATED 1 8 4 3 2
TP53BP1 WILD-TYPE 25 71 69 79 56
'TP53BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 0.067

Table S3509.  Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TP53BP1 MUTATED 3 7 6 2
TP53BP1 WILD-TYPE 124 44 65 67

Figure S1522.  Get High-res Image Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TP53BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00685 (Fisher's exact test), Q value = 0.046

Table S3510.  Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TP53BP1 MUTATED 1 1 9 4 5
TP53BP1 WILD-TYPE 83 84 76 65 42

Figure S1523.  Get High-res Image Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TP53BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.53

Table S3511.  Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TP53BP1 MUTATED 7 2 5 6
TP53BP1 WILD-TYPE 88 72 116 74
'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S3512.  Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TP53BP1 MUTATED 7 8 5 0 2 0
TP53BP1 WILD-TYPE 45 56 67 104 38 59

Figure S1524.  Get High-res Image Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.053 (Fisher's exact test), Q value = 0.15

Table S3513.  Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TP53BP1 MUTATED 18 2 2
TP53BP1 WILD-TYPE 199 73 97
'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00236 (Fisher's exact test), Q value = 0.025

Table S3514.  Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TP53BP1 MUTATED 9 0 6
TP53BP1 WILD-TYPE 112 108 66

Figure S1525.  Get High-res Image Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TP53BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S3515.  Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TP53BP1 MUTATED 2 0 5 0 8
TP53BP1 WILD-TYPE 86 66 40 55 39

Figure S1526.  Get High-res Image Gene #352: 'TP53BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CHPF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.081

Table S3516.  Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CHPF2 MUTATED 3 11 2 0
CHPF2 WILD-TYPE 201 126 45 3

Figure S1527.  Get High-res Image Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CHPF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0037

Table S3517.  Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CHPF2 MUTATED 0 10 3 0 0
CHPF2 WILD-TYPE 39 86 41 88 80

Figure S1528.  Get High-res Image Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CHPF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 0.77

Table S3518.  Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CHPF2 MUTATED 1 5 3 2 4
CHPF2 WILD-TYPE 25 74 70 80 54
'CHPF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00253 (Fisher's exact test), Q value = 0.026

Table S3519.  Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CHPF2 MUTATED 2 7 5 1
CHPF2 WILD-TYPE 125 44 66 68

Figure S1529.  Get High-res Image Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHPF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S3520.  Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CHPF2 MUTATED 0 3 9 3 1
CHPF2 WILD-TYPE 84 82 76 66 46

Figure S1530.  Get High-res Image Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CHPF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 0.17

Table S3521.  Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CHPF2 MUTATED 5 4 1 6
CHPF2 WILD-TYPE 90 70 120 74
'CHPF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S3522.  Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CHPF2 MUTATED 2 7 5 2 0 0
CHPF2 WILD-TYPE 50 57 67 102 40 59

Figure S1531.  Get High-res Image Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CHPF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.42

Table S3523.  Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CHPF2 MUTATED 12 1 3
CHPF2 WILD-TYPE 205 74 96
'CHPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S3524.  Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CHPF2 MUTATED 4 3 6
CHPF2 WILD-TYPE 117 105 66
'CHPF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S3525.  Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CHPF2 MUTATED 2 2 4 0 5
CHPF2 WILD-TYPE 86 64 41 55 42

Figure S1532.  Get High-res Image Gene #353: 'CHPF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.079

Table S3526.  Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPR141 MUTATED 2 9 0 0
GPR141 WILD-TYPE 202 128 47 3

Figure S1533.  Get High-res Image Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.074

Table S3527.  Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPR141 MUTATED 0 7 2 0 1
GPR141 WILD-TYPE 39 89 42 88 79

Figure S1534.  Get High-res Image Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.5

Table S3528.  Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPR141 MUTATED 0 3 5 1 2
GPR141 WILD-TYPE 26 76 68 81 56
'GPR141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00092 (Fisher's exact test), Q value = 0.015

Table S3529.  Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPR141 MUTATED 1 7 1 2
GPR141 WILD-TYPE 126 44 70 67

Figure S1535.  Get High-res Image Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0656 (Fisher's exact test), Q value = 0.17

Table S3530.  Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPR141 MUTATED 0 2 6 1 1
GPR141 WILD-TYPE 84 83 79 68 46
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.38

Table S3531.  Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPR141 MUTATED 2 3 1 4
GPR141 WILD-TYPE 93 71 120 76
'GPR141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S3532.  Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPR141 MUTATED 3 4 1 2 1 0
GPR141 WILD-TYPE 49 60 71 102 39 59
'GPR141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.44

Table S3533.  Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPR141 MUTATED 9 1 1
GPR141 WILD-TYPE 208 74 98
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.15

Table S3534.  Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPR141 MUTATED 2 1 5
GPR141 WILD-TYPE 119 107 67
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.58

Table S3535.  Gene #354: 'GPR141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPR141 MUTATED 4 1 2 0 1
GPR141 WILD-TYPE 84 65 43 55 46
'PPP1R15A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.11

Table S3536.  Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PPP1R15A MUTATED 0 5 0 0
PPP1R15A WILD-TYPE 204 132 47 3

Figure S1536.  Get High-res Image Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPP1R15A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.37

Table S3537.  Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PPP1R15A MUTATED 1 2 1 0 0
PPP1R15A WILD-TYPE 38 94 43 88 80
'PPP1R15A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 0.83

Table S3538.  Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PPP1R15A MUTATED 0 2 0 1 1
PPP1R15A WILD-TYPE 26 77 73 81 57
'PPP1R15A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0937 (Fisher's exact test), Q value = 0.21

Table S3539.  Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PPP1R15A MUTATED 0 2 1 1
PPP1R15A WILD-TYPE 127 49 70 68
'PPP1R15A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S3540.  Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PPP1R15A MUTATED 0 2 1 0 2
PPP1R15A WILD-TYPE 84 83 84 69 45
'PPP1R15A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.34

Table S3541.  Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PPP1R15A MUTATED 1 2 0 2
PPP1R15A WILD-TYPE 94 72 121 78
'PPP1R15A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.12

Table S3542.  Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PPP1R15A MUTATED 1 3 0 0 1 0
PPP1R15A WILD-TYPE 51 61 72 104 39 59

Figure S1537.  Get High-res Image Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPP1R15A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.88

Table S3543.  Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PPP1R15A MUTATED 4 0 1
PPP1R15A WILD-TYPE 213 75 98
'PPP1R15A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.66

Table S3544.  Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PPP1R15A MUTATED 1 1 2
PPP1R15A WILD-TYPE 120 107 70
'PPP1R15A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S3545.  Gene #355: 'PPP1R15A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PPP1R15A MUTATED 1 0 1 0 2
PPP1R15A WILD-TYPE 87 66 44 55 45
'KYNU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.1

Table S3546.  Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KYNU MUTATED 2 9 1 0
KYNU WILD-TYPE 202 128 46 3

Figure S1538.  Get High-res Image Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KYNU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 0.83

Table S3547.  Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KYNU MUTATED 1 3 2 1 2
KYNU WILD-TYPE 38 93 42 87 78
'KYNU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S3548.  Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KYNU MUTATED 1 4 4 0 3
KYNU WILD-TYPE 25 75 69 82 55
'KYNU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S3549.  Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KYNU MUTATED 4 4 3 1
KYNU WILD-TYPE 123 47 68 68
'KYNU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0341 (Fisher's exact test), Q value = 0.11

Table S3550.  Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KYNU MUTATED 1 2 7 0 2
KYNU WILD-TYPE 83 83 78 69 45

Figure S1539.  Get High-res Image Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KYNU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.058

Table S3551.  Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KYNU MUTATED 1 0 4 7
KYNU WILD-TYPE 94 74 117 73

Figure S1540.  Get High-res Image Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KYNU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00682 (Fisher's exact test), Q value = 0.046

Table S3552.  Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KYNU MUTATED 3 6 2 0 0 1
KYNU WILD-TYPE 49 58 70 104 40 58

Figure S1541.  Get High-res Image Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KYNU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S3553.  Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KYNU MUTATED 9 1 2
KYNU WILD-TYPE 208 74 97
'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.14

Table S3554.  Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KYNU MUTATED 3 0 4
KYNU WILD-TYPE 118 108 68

Figure S1542.  Get High-res Image Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KYNU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0808 (Fisher's exact test), Q value = 0.19

Table S3555.  Gene #356: 'KYNU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KYNU MUTATED 2 0 3 0 2
KYNU WILD-TYPE 86 66 42 55 45
'RIF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S3556.  Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RIF1 MUTATED 3 19 1 1
RIF1 WILD-TYPE 201 118 46 2

Figure S1543.  Get High-res Image Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RIF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.1

Table S3557.  Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RIF1 MUTATED 1 11 3 1 3
RIF1 WILD-TYPE 38 85 41 87 77

Figure S1544.  Get High-res Image Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RIF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.16

Table S3558.  Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RIF1 MUTATED 2 8 3 1 6
RIF1 WILD-TYPE 24 71 70 81 52
'RIF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00134 (Fisher's exact test), Q value = 0.018

Table S3559.  Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RIF1 MUTATED 6 10 3 1
RIF1 WILD-TYPE 121 41 68 68

Figure S1545.  Get High-res Image Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RIF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.079

Table S3560.  Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RIF1 MUTATED 1 3 11 5 4
RIF1 WILD-TYPE 83 82 74 64 43

Figure S1546.  Get High-res Image Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RIF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.013

Table S3561.  Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RIF1 MUTATED 9 3 1 11
RIF1 WILD-TYPE 86 71 120 69

Figure S1547.  Get High-res Image Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RIF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.0094

Table S3562.  Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RIF1 MUTATED 8 9 2 3 2 0
RIF1 WILD-TYPE 44 55 70 101 38 59

Figure S1548.  Get High-res Image Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RIF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00422 (Fisher's exact test), Q value = 0.035

Table S3563.  Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RIF1 MUTATED 21 1 2
RIF1 WILD-TYPE 196 74 97

Figure S1549.  Get High-res Image Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RIF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.056 (Fisher's exact test), Q value = 0.15

Table S3564.  Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RIF1 MUTATED 10 2 6
RIF1 WILD-TYPE 111 106 66
'RIF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S3565.  Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RIF1 MUTATED 7 0 4 1 6
RIF1 WILD-TYPE 81 66 41 54 41

Figure S1550.  Get High-res Image Gene #357: 'RIF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TBC1D10C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00296 (Fisher's exact test), Q value = 0.029

Table S3566.  Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TBC1D10C MUTATED 0 8 1 0
TBC1D10C WILD-TYPE 204 129 46 3

Figure S1551.  Get High-res Image Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TBC1D10C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00821 (Fisher's exact test), Q value = 0.05

Table S3567.  Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TBC1D10C MUTATED 0 6 2 0 0
TBC1D10C WILD-TYPE 39 90 42 88 80

Figure S1552.  Get High-res Image Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TBC1D10C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S3568.  Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TBC1D10C MUTATED 0 3 1 0 3
TBC1D10C WILD-TYPE 26 76 72 82 55
'TBC1D10C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00175 (Fisher's exact test), Q value = 0.022

Table S3569.  Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TBC1D10C MUTATED 0 4 3 0
TBC1D10C WILD-TYPE 127 47 68 69

Figure S1553.  Get High-res Image Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TBC1D10C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00446 (Fisher's exact test), Q value = 0.036

Table S3570.  Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TBC1D10C MUTATED 0 1 7 1 0
TBC1D10C WILD-TYPE 84 84 78 68 47

Figure S1554.  Get High-res Image Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TBC1D10C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S3571.  Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TBC1D10C MUTATED 1 0 0 8
TBC1D10C WILD-TYPE 94 74 121 72

Figure S1555.  Get High-res Image Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.53

Table S3572.  Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TBC1D10C MUTATED 3 2 2 2 0 0
TBC1D10C WILD-TYPE 49 62 70 102 40 59
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.1

Table S3573.  Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TBC1D10C MUTATED 9 0 0
TBC1D10C WILD-TYPE 208 75 99

Figure S1556.  Get High-res Image Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3574.  Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TBC1D10C MUTATED 3 2 2
TBC1D10C WILD-TYPE 118 106 70
'TBC1D10C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.11

Table S3575.  Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TBC1D10C MUTATED 2 0 1 0 4
TBC1D10C WILD-TYPE 86 66 44 55 43

Figure S1557.  Get High-res Image Gene #358: 'TBC1D10C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S3576.  Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UHRF1BP1 MUTATED 1 16 2 0
UHRF1BP1 WILD-TYPE 203 121 45 3

Figure S1558.  Get High-res Image Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.079

Table S3577.  Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UHRF1BP1 MUTATED 1 9 3 0 3
UHRF1BP1 WILD-TYPE 38 87 41 88 77

Figure S1559.  Get High-res Image Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.36

Table S3578.  Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UHRF1BP1 MUTATED 1 7 3 1 3
UHRF1BP1 WILD-TYPE 25 72 70 81 55
'UHRF1BP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.099

Table S3579.  Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UHRF1BP1 MUTATED 2 4 7 2
UHRF1BP1 WILD-TYPE 125 47 64 67

Figure S1560.  Get High-res Image Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S3580.  Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UHRF1BP1 MUTATED 1 2 7 4 3
UHRF1BP1 WILD-TYPE 83 83 78 65 44
'UHRF1BP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S3581.  Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UHRF1BP1 MUTATED 8 3 3 3
UHRF1BP1 WILD-TYPE 87 71 118 77
'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S3582.  Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UHRF1BP1 MUTATED 2 8 4 3 1 1
UHRF1BP1 WILD-TYPE 50 56 68 101 39 58
'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0696 (Fisher's exact test), Q value = 0.17

Table S3583.  Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UHRF1BP1 MUTATED 15 3 1
UHRF1BP1 WILD-TYPE 202 72 98
'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00051 (Fisher's exact test), Q value = 0.011

Table S3584.  Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
UHRF1BP1 MUTATED 4 1 10
UHRF1BP1 WILD-TYPE 117 107 62

Figure S1561.  Get High-res Image Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UHRF1BP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S3585.  Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
UHRF1BP1 MUTATED 3 2 6 0 4
UHRF1BP1 WILD-TYPE 85 64 39 55 43

Figure S1562.  Get High-res Image Gene #359: 'UHRF1BP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DLAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00209 (Fisher's exact test), Q value = 0.024

Table S3586.  Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DLAT MUTATED 0 8 0 0
DLAT WILD-TYPE 204 129 47 3

Figure S1563.  Get High-res Image Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DLAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.11

Table S3587.  Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DLAT MUTATED 0 5 1 0 0
DLAT WILD-TYPE 39 91 43 88 80

Figure S1564.  Get High-res Image Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DLAT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.57

Table S3588.  Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DLAT MUTATED 0 3 2 0 1
DLAT WILD-TYPE 26 76 71 82 57
'DLAT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00047 (Fisher's exact test), Q value = 0.01

Table S3589.  Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DLAT MUTATED 0 5 1 0
DLAT WILD-TYPE 127 46 70 69

Figure S1565.  Get High-res Image Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DLAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S3590.  Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DLAT MUTATED 0 2 3 1 1
DLAT WILD-TYPE 84 83 82 68 46
'DLAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S3591.  Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DLAT MUTATED 2 2 0 3
DLAT WILD-TYPE 93 72 121 77
'DLAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.12

Table S3592.  Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DLAT MUTATED 3 3 1 0 1 0
DLAT WILD-TYPE 49 61 71 104 39 59

Figure S1566.  Get High-res Image Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DLAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.6

Table S3593.  Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DLAT MUTATED 6 0 2
DLAT WILD-TYPE 211 75 97
'DLAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.12

Table S3594.  Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DLAT MUTATED 0 1 3
DLAT WILD-TYPE 121 107 69

Figure S1567.  Get High-res Image Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DLAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.37

Table S3595.  Gene #360: 'DLAT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DLAT MUTATED 1 0 1 0 2
DLAT WILD-TYPE 87 66 44 55 45
'CD93 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0151 (Fisher's exact test), Q value = 0.071

Table S3596.  Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CD93 MUTATED 4 13 1 0
CD93 WILD-TYPE 200 124 46 3

Figure S1568.  Get High-res Image Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00568 (Fisher's exact test), Q value = 0.041

Table S3597.  Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CD93 MUTATED 0 10 1 1 1
CD93 WILD-TYPE 39 86 43 87 79

Figure S1569.  Get High-res Image Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD93 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S3598.  Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CD93 MUTATED 1 6 7 1 2
CD93 WILD-TYPE 25 73 66 81 56
'CD93 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S3599.  Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CD93 MUTATED 3 8 3 3
CD93 WILD-TYPE 124 43 68 66

Figure S1570.  Get High-res Image Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CD93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S3600.  Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CD93 MUTATED 3 4 7 0 2
CD93 WILD-TYPE 81 81 78 69 45
'CD93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S3601.  Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CD93 MUTATED 3 4 1 8
CD93 WILD-TYPE 92 70 120 72

Figure S1571.  Get High-res Image Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CD93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S3602.  Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CD93 MUTATED 5 5 3 1 2 2
CD93 WILD-TYPE 47 59 69 103 38 57
'CD93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.38

Table S3603.  Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CD93 MUTATED 13 1 4
CD93 WILD-TYPE 204 74 95
'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.31

Table S3604.  Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CD93 MUTATED 4 1 4
CD93 WILD-TYPE 117 107 68
'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S3605.  Gene #361: 'CD93 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CD93 MUTATED 5 0 1 1 2
CD93 WILD-TYPE 83 66 44 54 45
'SGOL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.006

Table S3606.  Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SGOL2 MUTATED 0 10 3 0
SGOL2 WILD-TYPE 204 127 44 3

Figure S1572.  Get High-res Image Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SGOL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.057

Table S3607.  Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SGOL2 MUTATED 2 5 3 0 0
SGOL2 WILD-TYPE 37 91 41 88 80

Figure S1573.  Get High-res Image Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SGOL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.092 (Fisher's exact test), Q value = 0.21

Table S3608.  Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SGOL2 MUTATED 0 4 4 0 4
SGOL2 WILD-TYPE 26 75 69 82 54
'SGOL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.065

Table S3609.  Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SGOL2 MUTATED 2 6 3 1
SGOL2 WILD-TYPE 125 45 68 68

Figure S1574.  Get High-res Image Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.13

Table S3610.  Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SGOL2 MUTATED 0 2 7 2 1
SGOL2 WILD-TYPE 84 83 78 67 46

Figure S1575.  Get High-res Image Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SGOL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.13

Table S3611.  Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SGOL2 MUTATED 4 1 1 6
SGOL2 WILD-TYPE 91 73 120 74

Figure S1576.  Get High-res Image Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.18

Table S3612.  Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SGOL2 MUTATED 1 6 2 2 2 0
SGOL2 WILD-TYPE 51 58 70 102 38 59
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S3613.  Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SGOL2 MUTATED 10 1 2
SGOL2 WILD-TYPE 207 74 97
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S3614.  Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SGOL2 MUTATED 3 2 4
SGOL2 WILD-TYPE 118 106 68
'SGOL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.45

Table S3615.  Gene #362: 'SGOL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SGOL2 MUTATED 5 1 2 0 1
SGOL2 WILD-TYPE 83 65 43 55 46
'ADNP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.012

Table S3616.  Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ADNP2 MUTATED 2 14 3 0
ADNP2 WILD-TYPE 202 123 44 3

Figure S1577.  Get High-res Image Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADNP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.018

Table S3617.  Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ADNP2 MUTATED 1 10 4 1 0
ADNP2 WILD-TYPE 38 86 40 87 80

Figure S1578.  Get High-res Image Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADNP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.14

Table S3618.  Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ADNP2 MUTATED 1 7 5 0 3
ADNP2 WILD-TYPE 25 72 68 82 55

Figure S1579.  Get High-res Image Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ADNP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S3619.  Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ADNP2 MUTATED 2 10 4 0
ADNP2 WILD-TYPE 125 41 67 69

Figure S1580.  Get High-res Image Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00819 (Fisher's exact test), Q value = 0.05

Table S3620.  Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ADNP2 MUTATED 1 1 9 2 4
ADNP2 WILD-TYPE 83 84 76 67 43

Figure S1581.  Get High-res Image Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.018

Table S3621.  Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ADNP2 MUTATED 6 0 2 9
ADNP2 WILD-TYPE 89 74 119 71

Figure S1582.  Get High-res Image Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.015

Table S3622.  Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ADNP2 MUTATED 5 8 4 0 1 1
ADNP2 WILD-TYPE 47 56 68 104 39 58

Figure S1583.  Get High-res Image Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00081 (Fisher's exact test), Q value = 0.014

Table S3623.  Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ADNP2 MUTATED 18 0 1
ADNP2 WILD-TYPE 199 75 98

Figure S1584.  Get High-res Image Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.077

Table S3624.  Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ADNP2 MUTATED 7 1 7
ADNP2 WILD-TYPE 114 107 65

Figure S1585.  Get High-res Image Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ADNP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00999 (Fisher's exact test), Q value = 0.057

Table S3625.  Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ADNP2 MUTATED 4 0 4 1 6
ADNP2 WILD-TYPE 84 66 41 54 41

Figure S1586.  Get High-res Image Gene #363: 'ADNP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.015

Table S3626.  Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DPP7 MUTATED 0 9 0 0
DPP7 WILD-TYPE 204 128 47 3

Figure S1587.  Get High-res Image Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S3627.  Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DPP7 MUTATED 0 6 1 0 0
DPP7 WILD-TYPE 39 90 43 88 80

Figure S1588.  Get High-res Image Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.89

Table S3628.  Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DPP7 MUTATED 1 1 2 2 1
DPP7 WILD-TYPE 25 78 71 80 57
'DPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.672 (Fisher's exact test), Q value = 0.75

Table S3629.  Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DPP7 MUTATED 2 2 1 2
DPP7 WILD-TYPE 125 49 70 67
'DPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.12

Table S3630.  Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DPP7 MUTATED 0 1 6 1 1
DPP7 WILD-TYPE 84 84 79 68 46

Figure S1589.  Get High-res Image Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00408 (Fisher's exact test), Q value = 0.034

Table S3631.  Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DPP7 MUTATED 1 2 0 6
DPP7 WILD-TYPE 94 72 121 74

Figure S1590.  Get High-res Image Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S3632.  Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DPP7 MUTATED 2 4 1 1 1 0
DPP7 WILD-TYPE 50 60 71 103 39 59
'DPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S3633.  Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DPP7 MUTATED 7 1 1
DPP7 WILD-TYPE 210 74 98
'DPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.74

Table S3634.  Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DPP7 MUTATED 3 1 2
DPP7 WILD-TYPE 118 107 70
'DPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S3635.  Gene #364: 'DPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DPP7 MUTATED 4 0 1 0 1
DPP7 WILD-TYPE 84 66 44 55 46
'CSGALNACT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.38

Table S3636.  Gene #365: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CSGALNACT1 MUTATED 6 10 3 0
CSGALNACT1 WILD-TYPE 198 127 44 3
'CSGALNACT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 0.86

Table S3637.  Gene #365: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CSGALNACT1 MUTATED 2 5 1 5 2
CSGALNACT1 WILD-TYPE 37 91 43 83 78
'CSGALNACT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.51

Table S3638.  Gene #365: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CSGALNACT1 MUTATED 1 7 5 3 1
CSGALNACT1 WILD-TYPE 25 72 68 79 57
'CSGALNACT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S3639.  Gene #365: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CSGALNACT1 MUTATED 5 6 3 3
CSGALNACT1 WILD-TYPE 122 45 68 66
'CSGALNACT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.46

Table S3640.  Gene #365: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CSGALNACT1 MUTATED 4 3 7 1 1
CSGALNACT1 WILD-TYPE 80 82 78 68 46
'CSGALNACT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S3641.  Gene #365: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CSGALNACT1 MUTATED 3 3 5 5
CSGALNACT1 WILD-TYPE 92 71 116 75
'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.74

Table S3642.  Gene #365: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CSGALNACT1 MUTATED 3 4 2 4 1 5
CSGALNACT1 WILD-TYPE 49 60 70 100 39 54
'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S3643.  Gene #365: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CSGALNACT1 MUTATED 8 5 6
CSGALNACT1 WILD-TYPE 209 70 93
'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.19

Table S3644.  Gene #365: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CSGALNACT1 MUTATED 10 2 3
CSGALNACT1 WILD-TYPE 111 106 69
'CSGALNACT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.64

Table S3645.  Gene #365: 'CSGALNACT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CSGALNACT1 MUTATED 4 2 1 5 3
CSGALNACT1 WILD-TYPE 84 64 44 50 44
'CNNM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00239 (Fisher's exact test), Q value = 0.025

Table S3646.  Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CNNM1 MUTATED 1 10 0 0
CNNM1 WILD-TYPE 203 127 47 3

Figure S1591.  Get High-res Image Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CNNM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.16

Table S3647.  Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CNNM1 MUTATED 1 5 3 0 1
CNNM1 WILD-TYPE 38 91 41 88 79
'CNNM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.54

Table S3648.  Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CNNM1 MUTATED 0 4 4 1 1
CNNM1 WILD-TYPE 26 75 69 81 57
'CNNM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00217 (Fisher's exact test), Q value = 0.024

Table S3649.  Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CNNM1 MUTATED 1 5 4 0
CNNM1 WILD-TYPE 126 46 67 69

Figure S1592.  Get High-res Image Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CNNM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.12

Table S3650.  Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CNNM1 MUTATED 0 2 6 1 3
CNNM1 WILD-TYPE 84 83 79 68 44

Figure S1593.  Get High-res Image Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CNNM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.08

Table S3651.  Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CNNM1 MUTATED 3 1 1 7
CNNM1 WILD-TYPE 92 73 120 73

Figure S1594.  Get High-res Image Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CNNM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00454 (Fisher's exact test), Q value = 0.036

Table S3652.  Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CNNM1 MUTATED 3 5 4 0 0 0
CNNM1 WILD-TYPE 49 59 68 104 40 59

Figure S1595.  Get High-res Image Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNNM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.12

Table S3653.  Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CNNM1 MUTATED 11 0 1
CNNM1 WILD-TYPE 206 75 98

Figure S1596.  Get High-res Image Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CNNM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0634 (Fisher's exact test), Q value = 0.17

Table S3654.  Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CNNM1 MUTATED 5 0 3
CNNM1 WILD-TYPE 116 108 69
'CNNM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00017 (Fisher's exact test), Q value = 0.0054

Table S3655.  Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CNNM1 MUTATED 0 0 3 0 5
CNNM1 WILD-TYPE 88 66 42 55 42

Figure S1597.  Get High-res Image Gene #366: 'CNNM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IFRD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.068

Table S3656.  Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IFRD1 MUTATED 1 8 1 0
IFRD1 WILD-TYPE 203 129 46 3

Figure S1598.  Get High-res Image Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IFRD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0181 (Fisher's exact test), Q value = 0.079

Table S3657.  Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IFRD1 MUTATED 0 2 4 1 0
IFRD1 WILD-TYPE 39 94 40 87 80

Figure S1599.  Get High-res Image Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IFRD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S3658.  Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IFRD1 MUTATED 0 3 2 0 4
IFRD1 WILD-TYPE 26 76 71 82 54
'IFRD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 0.17

Table S3659.  Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IFRD1 MUTATED 1 4 2 2
IFRD1 WILD-TYPE 126 47 69 67
'IFRD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S3660.  Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IFRD1 MUTATED 0 2 5 1 1
IFRD1 WILD-TYPE 84 83 80 68 46
'IFRD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 0.2

Table S3661.  Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IFRD1 MUTATED 1 2 1 5
IFRD1 WILD-TYPE 94 72 120 75
'IFRD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.013

Table S3662.  Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IFRD1 MUTATED 1 7 1 0 1 0
IFRD1 WILD-TYPE 51 57 71 104 39 59

Figure S1600.  Get High-res Image Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.066

Table S3663.  Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IFRD1 MUTATED 10 0 0
IFRD1 WILD-TYPE 207 75 99

Figure S1601.  Get High-res Image Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00742 (Fisher's exact test), Q value = 0.048

Table S3664.  Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IFRD1 MUTATED 2 0 5
IFRD1 WILD-TYPE 119 108 67

Figure S1602.  Get High-res Image Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IFRD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.33

Table S3665.  Gene #367: 'IFRD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IFRD1 MUTATED 3 0 2 0 2
IFRD1 WILD-TYPE 85 66 43 55 45
'IGFBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.064

Table S3666.  Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IGFBP1 MUTATED 1 8 2 0
IGFBP1 WILD-TYPE 203 129 45 3

Figure S1603.  Get High-res Image Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IGFBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S3667.  Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IGFBP1 MUTATED 1 6 2 1 1
IGFBP1 WILD-TYPE 38 90 42 87 79
'IGFBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.01 (Fisher's exact test), Q value = 0.057

Table S3668.  Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IGFBP1 MUTATED 1 5 0 0 4
IGFBP1 WILD-TYPE 25 74 73 82 54

Figure S1604.  Get High-res Image Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IGFBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00425 (Fisher's exact test), Q value = 0.035

Table S3669.  Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IGFBP1 MUTATED 1 6 2 1
IGFBP1 WILD-TYPE 126 45 69 68

Figure S1605.  Get High-res Image Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IGFBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0052 (Fisher's exact test), Q value = 0.039

Table S3670.  Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IGFBP1 MUTATED 1 1 8 0 1
IGFBP1 WILD-TYPE 83 84 77 69 46

Figure S1606.  Get High-res Image Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IGFBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S3671.  Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IGFBP1 MUTATED 3 2 1 5
IGFBP1 WILD-TYPE 92 72 120 75
'IGFBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00574 (Fisher's exact test), Q value = 0.042

Table S3672.  Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IGFBP1 MUTATED 4 4 3 0 0 0
IGFBP1 WILD-TYPE 48 60 69 104 40 59

Figure S1607.  Get High-res Image Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IGFBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.062 (Fisher's exact test), Q value = 0.16

Table S3673.  Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IGFBP1 MUTATED 10 0 1
IGFBP1 WILD-TYPE 207 75 98
'IGFBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 0.21

Table S3674.  Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IGFBP1 MUTATED 5 1 5
IGFBP1 WILD-TYPE 116 107 67
'IGFBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0441 (Fisher's exact test), Q value = 0.13

Table S3675.  Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IGFBP1 MUTATED 5 0 3 0 3
IGFBP1 WILD-TYPE 83 66 42 55 44

Figure S1608.  Get High-res Image Gene #368: 'IGFBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SH3KBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0789 (Fisher's exact test), Q value = 0.19

Table S3676.  Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SH3KBP1 MUTATED 4 10 1 0
SH3KBP1 WILD-TYPE 200 127 46 3
'SH3KBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.61

Table S3677.  Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SH3KBP1 MUTATED 2 5 1 1 2
SH3KBP1 WILD-TYPE 37 91 43 87 78
'SH3KBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.56

Table S3678.  Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SH3KBP1 MUTATED 1 4 5 1 2
SH3KBP1 WILD-TYPE 25 75 68 81 56
'SH3KBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00706 (Fisher's exact test), Q value = 0.046

Table S3679.  Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SH3KBP1 MUTATED 3 7 2 1
SH3KBP1 WILD-TYPE 124 44 69 68

Figure S1609.  Get High-res Image Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SH3KBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.5

Table S3680.  Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SH3KBP1 MUTATED 1 3 6 2 1
SH3KBP1 WILD-TYPE 83 82 79 67 46
'SH3KBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S3681.  Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SH3KBP1 MUTATED 2 2 3 6
SH3KBP1 WILD-TYPE 93 72 118 74
'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.13

Table S3682.  Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SH3KBP1 MUTATED 4 5 3 1 2 0
SH3KBP1 WILD-TYPE 48 59 69 103 38 59

Figure S1610.  Get High-res Image Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0655 (Fisher's exact test), Q value = 0.17

Table S3683.  Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SH3KBP1 MUTATED 13 1 1
SH3KBP1 WILD-TYPE 204 74 98
'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.18

Table S3684.  Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SH3KBP1 MUTATED 7 1 1
SH3KBP1 WILD-TYPE 114 107 71
'SH3KBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S3685.  Gene #369: 'SH3KBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SH3KBP1 MUTATED 3 1 1 0 4
SH3KBP1 WILD-TYPE 85 65 44 55 43
'HIST1H1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00444 (Fisher's exact test), Q value = 0.036

Table S3686.  Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HIST1H1A MUTATED 0 7 2 0
HIST1H1A WILD-TYPE 204 130 45 3

Figure S1611.  Get High-res Image Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIST1H1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S3687.  Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HIST1H1A MUTATED 0 3 0 0 2
HIST1H1A WILD-TYPE 39 93 44 88 78
'HIST1H1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.078

Table S3688.  Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HIST1H1A MUTATED 1 5 0 0 3
HIST1H1A WILD-TYPE 25 74 73 82 55

Figure S1612.  Get High-res Image Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HIST1H1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 0.13

Table S3689.  Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HIST1H1A MUTATED 1 4 3 1
HIST1H1A WILD-TYPE 126 47 68 68

Figure S1613.  Get High-res Image Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S3690.  Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HIST1H1A MUTATED 1 0 4 1 1
HIST1H1A WILD-TYPE 83 85 81 68 46
'HIST1H1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.66

Table S3691.  Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HIST1H1A MUTATED 2 1 1 3
HIST1H1A WILD-TYPE 93 73 120 77
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S3692.  Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HIST1H1A MUTATED 0 5 1 2 0 1
HIST1H1A WILD-TYPE 52 59 71 102 40 58
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S3693.  Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HIST1H1A MUTATED 7 1 1
HIST1H1A WILD-TYPE 210 74 98
'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 0.14

Table S3694.  Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HIST1H1A MUTATED 0 2 3
HIST1H1A WILD-TYPE 121 106 69

Figure S1614.  Get High-res Image Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HIST1H1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.6

Table S3695.  Gene #370: 'HIST1H1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HIST1H1A MUTATED 1 1 2 0 1
HIST1H1A WILD-TYPE 87 65 43 55 46
'TUBE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0928 (Fisher's exact test), Q value = 0.21

Table S3696.  Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TUBE1 MUTATED 2 7 0 0
TUBE1 WILD-TYPE 202 130 47 3
'TUBE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S3697.  Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TUBE1 MUTATED 1 4 1 1 0
TUBE1 WILD-TYPE 38 92 43 87 80
'TUBE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.17

Table S3698.  Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TUBE1 MUTATED 0 5 1 0 3
TUBE1 WILD-TYPE 26 74 72 82 55
'TUBE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.13

Table S3699.  Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TUBE1 MUTATED 1 4 3 1
TUBE1 WILD-TYPE 126 47 68 68

Figure S1615.  Get High-res Image Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S3700.  Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TUBE1 MUTATED 1 0 4 1 2
TUBE1 WILD-TYPE 83 85 81 68 45
'TUBE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S3701.  Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TUBE1 MUTATED 2 1 1 4
TUBE1 WILD-TYPE 93 73 120 76
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 0.88

Table S3702.  Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TUBE1 MUTATED 2 2 2 1 1 1
TUBE1 WILD-TYPE 50 62 70 103 39 58
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S3703.  Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TUBE1 MUTATED 8 0 1
TUBE1 WILD-TYPE 209 75 98
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.78

Table S3704.  Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TUBE1 MUTATED 4 2 1
TUBE1 WILD-TYPE 117 106 71
'TUBE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.37

Table S3705.  Gene #371: 'TUBE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TUBE1 MUTATED 4 0 0 1 2
TUBE1 WILD-TYPE 84 66 45 54 45
'IPO11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.12

Table S3706.  Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IPO11 MUTATED 2 8 0 0
IPO11 WILD-TYPE 202 129 47 3

Figure S1616.  Get High-res Image Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IPO11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.26

Table S3707.  Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IPO11 MUTATED 1 5 2 1 0
IPO11 WILD-TYPE 38 91 42 87 80
'IPO11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S3708.  Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IPO11 MUTATED 0 7 1 0 1
IPO11 WILD-TYPE 26 72 72 82 57

Figure S1617.  Get High-res Image Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IPO11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.079

Table S3709.  Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IPO11 MUTATED 3 5 1 0
IPO11 WILD-TYPE 124 46 70 69

Figure S1618.  Get High-res Image Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IPO11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S3710.  Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IPO11 MUTATED 1 3 5 0 1
IPO11 WILD-TYPE 83 82 80 69 46
'IPO11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.86

Table S3711.  Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IPO11 MUTATED 3 2 2 3
IPO11 WILD-TYPE 92 72 119 77
'IPO11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.56

Table S3712.  Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IPO11 MUTATED 2 4 2 1 1 1
IPO11 WILD-TYPE 50 60 70 103 39 58
'IPO11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S3713.  Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IPO11 MUTATED 8 1 2
IPO11 WILD-TYPE 209 74 97
'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S3714.  Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IPO11 MUTATED 2 2 4
IPO11 WILD-TYPE 119 106 68
'IPO11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S3715.  Gene #372: 'IPO11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IPO11 MUTATED 1 1 1 1 4
IPO11 WILD-TYPE 87 65 44 54 43
'IDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.19

Table S3716.  Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IDH2 MUTATED 0 3 1 0
IDH2 WILD-TYPE 204 134 46 3
'IDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.67 (Fisher's exact test), Q value = 0.75

Table S3717.  Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IDH2 MUTATED 0 2 1 0 1
IDH2 WILD-TYPE 39 94 43 88 79
'IDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S3718.  Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IDH2 MUTATED 0 2 0 1 0
IDH2 WILD-TYPE 26 77 73 81 58
'IDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S3719.  Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IDH2 MUTATED 0 1 1 1
IDH2 WILD-TYPE 127 50 70 68
'IDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.46

Table S3720.  Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IDH2 MUTATED 0 0 2 1 1
IDH2 WILD-TYPE 84 85 83 68 46
'IDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 0.95

Table S3721.  Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IDH2 MUTATED 1 0 2 1
IDH2 WILD-TYPE 94 74 119 79
'IDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S3722.  Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IDH2 MUTATED 2 1 1 0 0 0
IDH2 WILD-TYPE 50 63 71 104 40 59
'IDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.73

Table S3723.  Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IDH2 MUTATED 3 1 0
IDH2 WILD-TYPE 214 74 99
'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S3724.  Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IDH2 MUTATED 1 0 2
IDH2 WILD-TYPE 120 108 70
'IDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.11

Table S3725.  Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IDH2 MUTATED 0 0 2 0 1
IDH2 WILD-TYPE 88 66 43 55 46

Figure S1619.  Get High-res Image Gene #373: 'IDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZCCHC11 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S3726.  Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZCCHC11 MUTATED 1 15 2 0
ZCCHC11 WILD-TYPE 203 122 45 3

Figure S1620.  Get High-res Image Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZCCHC11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00595 (Fisher's exact test), Q value = 0.043

Table S3727.  Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZCCHC11 MUTATED 2 9 1 1 0
ZCCHC11 WILD-TYPE 37 87 43 87 80

Figure S1621.  Get High-res Image Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZCCHC11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.78

Table S3728.  Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZCCHC11 MUTATED 0 5 3 3 4
ZCCHC11 WILD-TYPE 26 74 70 79 54
'ZCCHC11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S3729.  Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZCCHC11 MUTATED 2 6 3 4
ZCCHC11 WILD-TYPE 125 45 68 65

Figure S1622.  Get High-res Image Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZCCHC11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.073

Table S3730.  Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZCCHC11 MUTATED 0 4 9 2 2
ZCCHC11 WILD-TYPE 84 81 76 67 45

Figure S1623.  Get High-res Image Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZCCHC11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00153 (Fisher's exact test), Q value = 0.02

Table S3731.  Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZCCHC11 MUTATED 3 3 1 10
ZCCHC11 WILD-TYPE 92 71 120 70

Figure S1624.  Get High-res Image Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S3732.  Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZCCHC11 MUTATED 5 4 4 4 1 0
ZCCHC11 WILD-TYPE 47 60 68 100 39 59
'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S3733.  Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZCCHC11 MUTATED 14 2 2
ZCCHC11 WILD-TYPE 203 73 97
'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.63

Table S3734.  Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZCCHC11 MUTATED 7 3 2
ZCCHC11 WILD-TYPE 114 105 70
'ZCCHC11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0127 (Fisher's exact test), Q value = 0.065

Table S3735.  Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZCCHC11 MUTATED 8 0 0 1 3
ZCCHC11 WILD-TYPE 80 66 45 54 44

Figure S1625.  Get High-res Image Gene #374: 'ZCCHC11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SYNCRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S3736.  Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SYNCRIP MUTATED 4 9 2 0
SYNCRIP WILD-TYPE 200 128 45 3
'SYNCRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S3737.  Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SYNCRIP MUTATED 2 6 2 3 0
SYNCRIP WILD-TYPE 37 90 42 85 80
'SYNCRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S3738.  Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SYNCRIP MUTATED 1 6 4 1 2
SYNCRIP WILD-TYPE 25 73 69 81 56
'SYNCRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00444 (Fisher's exact test), Q value = 0.036

Table S3739.  Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SYNCRIP MUTATED 5 7 2 0
SYNCRIP WILD-TYPE 122 44 69 69

Figure S1626.  Get High-res Image Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.1

Table S3740.  Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SYNCRIP MUTATED 4 0 7 1 1
SYNCRIP WILD-TYPE 80 85 78 68 46

Figure S1627.  Get High-res Image Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SYNCRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.58

Table S3741.  Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SYNCRIP MUTATED 3 1 4 5
SYNCRIP WILD-TYPE 92 73 117 75
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S3742.  Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SYNCRIP MUTATED 4 3 3 1 0 4
SYNCRIP WILD-TYPE 48 61 69 103 40 55
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 0.83

Table S3743.  Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SYNCRIP MUTATED 8 2 5
SYNCRIP WILD-TYPE 209 73 94
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S3744.  Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SYNCRIP MUTATED 6 2 4
SYNCRIP WILD-TYPE 115 106 68
'SYNCRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.78

Table S3745.  Gene #375: 'SYNCRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SYNCRIP MUTATED 2 2 2 3 3
SYNCRIP WILD-TYPE 86 64 43 52 44
'BAT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 0.19

Table S3746.  Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BAT3 MUTATED 4 9 0 0
BAT3 WILD-TYPE 200 128 47 3
'BAT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0722 (Fisher's exact test), Q value = 0.18

Table S3747.  Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BAT3 MUTATED 1 8 0 2 1
BAT3 WILD-TYPE 38 88 44 86 79
'BAT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S3748.  Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BAT3 MUTATED 2 0 4 2 2
BAT3 WILD-TYPE 24 79 69 80 56
'BAT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.091

Table S3749.  Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BAT3 MUTATED 3 5 0 2
BAT3 WILD-TYPE 124 46 71 67

Figure S1628.  Get High-res Image Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BAT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.44

Table S3750.  Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BAT3 MUTATED 1 2 6 3 1
BAT3 WILD-TYPE 83 83 79 66 46
'BAT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.52

Table S3751.  Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BAT3 MUTATED 5 2 2 4
BAT3 WILD-TYPE 90 72 119 76
'BAT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.864 (Fisher's exact test), Q value = 0.91

Table S3752.  Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BAT3 MUTATED 3 3 2 3 1 1
BAT3 WILD-TYPE 49 61 70 101 39 58
'BAT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.72

Table S3753.  Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BAT3 MUTATED 8 1 4
BAT3 WILD-TYPE 209 74 95
'BAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S3754.  Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BAT3 MUTATED 4 3 4
BAT3 WILD-TYPE 117 105 68
'BAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.77

Table S3755.  Gene #376: 'BAT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BAT3 MUTATED 3 1 3 2 2
BAT3 WILD-TYPE 85 65 42 53 45
'PRPF40B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0062

Table S3756.  Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRPF40B MUTATED 2 14 0 0
PRPF40B WILD-TYPE 202 123 47 3

Figure S1629.  Get High-res Image Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRPF40B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.073

Table S3757.  Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PRPF40B MUTATED 2 8 2 1 0
PRPF40B WILD-TYPE 37 88 42 87 80

Figure S1630.  Get High-res Image Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRPF40B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S3758.  Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRPF40B MUTATED 0 5 7 1 2
PRPF40B WILD-TYPE 26 74 66 81 56
'PRPF40B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S3759.  Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRPF40B MUTATED 3 7 4 1
PRPF40B WILD-TYPE 124 44 67 68

Figure S1631.  Get High-res Image Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PRPF40B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00187 (Fisher's exact test), Q value = 0.022

Table S3760.  Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRPF40B MUTATED 0 3 10 1 3
PRPF40B WILD-TYPE 84 82 75 68 44

Figure S1632.  Get High-res Image Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PRPF40B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00129 (Fisher's exact test), Q value = 0.018

Table S3761.  Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRPF40B MUTATED 4 5 0 8
PRPF40B WILD-TYPE 91 69 121 72

Figure S1633.  Get High-res Image Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00839 (Fisher's exact test), Q value = 0.051

Table S3762.  Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRPF40B MUTATED 5 7 2 3 0 0
PRPF40B WILD-TYPE 47 57 70 101 40 59

Figure S1634.  Get High-res Image Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRPF40B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S3763.  Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRPF40B MUTATED 12 3 2
PRPF40B WILD-TYPE 205 72 97
'PRPF40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.19

Table S3764.  Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PRPF40B MUTATED 3 2 6
PRPF40B WILD-TYPE 118 106 66
'PRPF40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 0.087

Table S3765.  Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PRPF40B MUTATED 1 2 4 0 4
PRPF40B WILD-TYPE 87 64 41 55 43

Figure S1635.  Get High-res Image Gene #377: 'PRPF40B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OXNAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S3766.  Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OXNAD1 MUTATED 1 4 1 0
OXNAD1 WILD-TYPE 203 133 46 3
'OXNAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0719 (Fisher's exact test), Q value = 0.18

Table S3767.  Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OXNAD1 MUTATED 0 5 0 0 1
OXNAD1 WILD-TYPE 39 91 44 88 79
'OXNAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S3768.  Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OXNAD1 MUTATED 1 0 1 1 1
OXNAD1 WILD-TYPE 25 79 72 81 57
'OXNAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.38

Table S3769.  Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OXNAD1 MUTATED 1 2 0 1
OXNAD1 WILD-TYPE 126 49 71 68
'OXNAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S3770.  Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OXNAD1 MUTATED 0 1 4 1 0
OXNAD1 WILD-TYPE 84 84 81 68 47
'OXNAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S3771.  Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OXNAD1 MUTATED 2 1 0 3
OXNAD1 WILD-TYPE 93 73 121 77
'OXNAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S3772.  Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OXNAD1 MUTATED 3 0 2 1 0 0
OXNAD1 WILD-TYPE 49 64 70 103 40 59
'OXNAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S3773.  Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OXNAD1 MUTATED 5 1 0
OXNAD1 WILD-TYPE 212 74 99
'OXNAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.89

Table S3774.  Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OXNAD1 MUTATED 3 1 1
OXNAD1 WILD-TYPE 118 107 71
'OXNAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0033 (Fisher's exact test), Q value = 0.031

Table S3775.  Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OXNAD1 MUTATED 0 1 0 0 4
OXNAD1 WILD-TYPE 88 65 45 55 43

Figure S1636.  Get High-res Image Gene #378: 'OXNAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S3776.  Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
YLPM1 MUTATED 1 21 2 0
YLPM1 WILD-TYPE 203 116 45 3

Figure S1637.  Get High-res Image Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'YLPM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00718 (Fisher's exact test), Q value = 0.047

Table S3777.  Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
YLPM1 MUTATED 2 9 5 0 3
YLPM1 WILD-TYPE 37 87 39 88 77

Figure S1638.  Get High-res Image Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'YLPM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 0.17

Table S3778.  Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
YLPM1 MUTATED 1 10 7 2 2
YLPM1 WILD-TYPE 25 69 66 80 56
'YLPM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.0099

Table S3779.  Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
YLPM1 MUTATED 3 10 7 2
YLPM1 WILD-TYPE 124 41 64 67

Figure S1639.  Get High-res Image Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.1

Table S3780.  Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
YLPM1 MUTATED 1 4 10 2 4
YLPM1 WILD-TYPE 83 81 75 67 43

Figure S1640.  Get High-res Image Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'YLPM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S3781.  Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
YLPM1 MUTATED 5 3 3 10
YLPM1 WILD-TYPE 90 71 118 70

Figure S1641.  Get High-res Image Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00551 (Fisher's exact test), Q value = 0.041

Table S3782.  Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
YLPM1 MUTATED 6 10 3 3 1 1
YLPM1 WILD-TYPE 46 54 69 101 39 58

Figure S1642.  Get High-res Image Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.13

Table S3783.  Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
YLPM1 MUTATED 19 3 2
YLPM1 WILD-TYPE 198 72 97

Figure S1643.  Get High-res Image Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.16

Table S3784.  Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
YLPM1 MUTATED 6 3 8
YLPM1 WILD-TYPE 115 105 64
'YLPM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00711 (Fisher's exact test), Q value = 0.047

Table S3785.  Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
YLPM1 MUTATED 5 0 5 1 6
YLPM1 WILD-TYPE 83 66 40 54 41

Figure S1644.  Get High-res Image Gene #379: 'YLPM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.0091

Table S3786.  Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLEKHA5 MUTATED 2 15 2 0
PLEKHA5 WILD-TYPE 202 122 45 3

Figure S1645.  Get High-res Image Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00283 (Fisher's exact test), Q value = 0.028

Table S3787.  Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLEKHA5 MUTATED 2 10 2 0 1
PLEKHA5 WILD-TYPE 37 86 42 88 79

Figure S1646.  Get High-res Image Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S3788.  Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLEKHA5 MUTATED 1 8 4 1 3
PLEKHA5 WILD-TYPE 25 71 69 81 55
'PLEKHA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.079

Table S3789.  Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLEKHA5 MUTATED 3 7 5 2
PLEKHA5 WILD-TYPE 124 44 66 67

Figure S1647.  Get High-res Image Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.0092

Table S3790.  Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLEKHA5 MUTATED 0 2 10 1 5
PLEKHA5 WILD-TYPE 84 83 75 68 42

Figure S1648.  Get High-res Image Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0269 (Fisher's exact test), Q value = 0.1

Table S3791.  Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLEKHA5 MUTATED 4 3 2 9
PLEKHA5 WILD-TYPE 91 71 119 71

Figure S1649.  Get High-res Image Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.071

Table S3792.  Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLEKHA5 MUTATED 5 7 4 2 1 0
PLEKHA5 WILD-TYPE 47 57 68 102 39 59

Figure S1650.  Get High-res Image Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00235 (Fisher's exact test), Q value = 0.025

Table S3793.  Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLEKHA5 MUTATED 17 2 0
PLEKHA5 WILD-TYPE 200 73 99

Figure S1651.  Get High-res Image Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S3794.  Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLEKHA5 MUTATED 5 1 7
PLEKHA5 WILD-TYPE 116 107 65

Figure S1652.  Get High-res Image Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PLEKHA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.013

Table S3795.  Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLEKHA5 MUTATED 5 0 1 0 7
PLEKHA5 WILD-TYPE 83 66 44 55 40

Figure S1653.  Get High-res Image Gene #380: 'PLEKHA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TM7SF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.16

Table S3796.  Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TM7SF4 MUTATED 5 12 2 0
TM7SF4 WILD-TYPE 199 125 45 3
'TM7SF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00465 (Fisher's exact test), Q value = 0.037

Table S3797.  Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TM7SF4 MUTATED 3 11 1 1 1
TM7SF4 WILD-TYPE 36 85 43 87 79

Figure S1654.  Get High-res Image Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TM7SF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S3798.  Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TM7SF4 MUTATED 0 4 8 3 3
TM7SF4 WILD-TYPE 26 75 65 79 55
'TM7SF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00438 (Fisher's exact test), Q value = 0.036

Table S3799.  Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TM7SF4 MUTATED 4 9 3 2
TM7SF4 WILD-TYPE 123 42 68 67

Figure S1655.  Get High-res Image Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TM7SF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S3800.  Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TM7SF4 MUTATED 2 2 7 3 5
TM7SF4 WILD-TYPE 82 83 78 66 42
'TM7SF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S3801.  Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TM7SF4 MUTATED 5 2 5 7
TM7SF4 WILD-TYPE 90 72 116 73
'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S3802.  Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TM7SF4 MUTATED 3 6 4 2 2 2
TM7SF4 WILD-TYPE 49 58 68 102 38 57
'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S3803.  Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TM7SF4 MUTATED 15 2 2
TM7SF4 WILD-TYPE 202 73 97
'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.33

Table S3804.  Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TM7SF4 MUTATED 10 3 4
TM7SF4 WILD-TYPE 111 105 68
'TM7SF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0593 (Fisher's exact test), Q value = 0.16

Table S3805.  Gene #381: 'TM7SF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TM7SF4 MUTATED 5 1 2 2 7
TM7SF4 WILD-TYPE 83 65 43 53 40
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.022

Table S3806.  Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CTNNB1 MUTATED 4 16 4 0
CTNNB1 WILD-TYPE 200 121 43 3

Figure S1656.  Get High-res Image Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0605 (Fisher's exact test), Q value = 0.16

Table S3807.  Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CTNNB1 MUTATED 2 7 7 2 4
CTNNB1 WILD-TYPE 37 89 37 86 76
'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 0.9

Table S3808.  Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CTNNB1 MUTATED 2 7 4 4 4
CTNNB1 WILD-TYPE 24 72 69 78 54
'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00471 (Fisher's exact test), Q value = 0.037

Table S3809.  Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CTNNB1 MUTATED 3 9 5 4
CTNNB1 WILD-TYPE 124 42 66 65

Figure S1657.  Get High-res Image Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0037

Table S3810.  Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CTNNB1 MUTATED 3 2 14 0 3
CTNNB1 WILD-TYPE 81 83 71 69 44

Figure S1658.  Get High-res Image Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S3811.  Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CTNNB1 MUTATED 2 3 10 7
CTNNB1 WILD-TYPE 93 71 111 73
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S3812.  Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CTNNB1 MUTATED 3 7 8 3 1 2
CTNNB1 WILD-TYPE 49 57 64 101 39 57
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.43

Table S3813.  Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CTNNB1 MUTATED 16 5 3
CTNNB1 WILD-TYPE 201 70 96
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0466 (Fisher's exact test), Q value = 0.14

Table S3814.  Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CTNNB1 MUTATED 9 2 7
CTNNB1 WILD-TYPE 112 106 65

Figure S1659.  Get High-res Image Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.185 (Fisher's exact test), Q value = 0.32

Table S3815.  Gene #382: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CTNNB1 MUTATED 4 3 5 1 5
CTNNB1 WILD-TYPE 84 63 40 54 42
'SNAPC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 0.21

Table S3816.  Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SNAPC2 MUTATED 2 7 0 0
SNAPC2 WILD-TYPE 202 130 47 3
'SNAPC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.082

Table S3817.  Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SNAPC2 MUTATED 0 7 1 0 1
SNAPC2 WILD-TYPE 39 89 43 88 79

Figure S1660.  Get High-res Image Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SNAPC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0188 (Fisher's exact test), Q value = 0.081

Table S3818.  Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SNAPC2 MUTATED 1 1 5 0 0
SNAPC2 WILD-TYPE 25 78 68 82 58

Figure S1661.  Get High-res Image Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SNAPC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S3819.  Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SNAPC2 MUTATED 1 6 0 0
SNAPC2 WILD-TYPE 126 45 71 69

Figure S1662.  Get High-res Image Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.12

Table S3820.  Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SNAPC2 MUTATED 0 1 6 1 1
SNAPC2 WILD-TYPE 84 84 79 68 46

Figure S1663.  Get High-res Image Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SNAPC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S3821.  Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SNAPC2 MUTATED 2 1 1 5
SNAPC2 WILD-TYPE 93 73 120 75
'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S3822.  Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SNAPC2 MUTATED 3 3 2 1 0 0
SNAPC2 WILD-TYPE 49 61 70 103 40 59
'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0969 (Fisher's exact test), Q value = 0.21

Table S3823.  Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SNAPC2 MUTATED 8 1 0
SNAPC2 WILD-TYPE 209 74 99
'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S3824.  Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SNAPC2 MUTATED 4 1 3
SNAPC2 WILD-TYPE 117 107 69
'SNAPC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.63

Table S3825.  Gene #383: 'SNAPC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SNAPC2 MUTATED 3 1 2 0 2
SNAPC2 WILD-TYPE 85 65 43 55 45
'MAP2K7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.068

Table S3826.  Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAP2K7 MUTATED 8 17 1 0
MAP2K7 WILD-TYPE 196 120 46 3

Figure S1664.  Get High-res Image Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP2K7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.012

Table S3827.  Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAP2K7 MUTATED 0 15 0 3 5
MAP2K7 WILD-TYPE 39 81 44 85 75

Figure S1665.  Get High-res Image Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP2K7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S3828.  Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAP2K7 MUTATED 0 8 7 6 1
MAP2K7 WILD-TYPE 26 71 66 76 57
'MAP2K7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S3829.  Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAP2K7 MUTATED 5 7 6 4
MAP2K7 WILD-TYPE 122 44 65 65
'MAP2K7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.2

Table S3830.  Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAP2K7 MUTATED 2 5 10 2 4
MAP2K7 WILD-TYPE 82 80 75 67 43
'MAP2K7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S3831.  Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAP2K7 MUTATED 7 5 3 8
MAP2K7 WILD-TYPE 88 69 118 72
'MAP2K7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S3832.  Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAP2K7 MUTATED 6 8 4 5 3 1
MAP2K7 WILD-TYPE 46 56 68 99 37 58
'MAP2K7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S3833.  Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAP2K7 MUTATED 20 3 4
MAP2K7 WILD-TYPE 197 72 95
'MAP2K7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S3834.  Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAP2K7 MUTATED 8 8 5
MAP2K7 WILD-TYPE 113 100 67
'MAP2K7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S3835.  Gene #384: 'MAP2K7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAP2K7 MUTATED 7 5 4 0 5
MAP2K7 WILD-TYPE 81 61 41 55 42
'CETN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00101 (Fisher's exact test), Q value = 0.016

Table S3836.  Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CETN3 MUTATED 0 9 0 0
CETN3 WILD-TYPE 204 128 47 3

Figure S1666.  Get High-res Image Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CETN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S3837.  Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CETN3 MUTATED 1 4 1 0 1
CETN3 WILD-TYPE 38 92 43 88 79
'CETN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 0.8

Table S3838.  Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CETN3 MUTATED 1 2 1 1 2
CETN3 WILD-TYPE 25 77 72 81 56
'CETN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.15

Table S3839.  Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CETN3 MUTATED 1 4 1 1
CETN3 WILD-TYPE 126 47 70 68
'CETN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.15

Table S3840.  Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CETN3 MUTATED 0 2 3 0 3
CETN3 WILD-TYPE 84 83 82 69 44
'CETN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S3841.  Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CETN3 MUTATED 2 1 1 4
CETN3 WILD-TYPE 93 73 120 76
'CETN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S3842.  Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CETN3 MUTATED 3 3 1 1 1 0
CETN3 WILD-TYPE 49 61 71 103 39 59
'CETN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S3843.  Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CETN3 MUTATED 7 1 1
CETN3 WILD-TYPE 210 74 98
'CETN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.55

Table S3844.  Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CETN3 MUTATED 3 1 3
CETN3 WILD-TYPE 118 107 69
'CETN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.46

Table S3845.  Gene #385: 'CETN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CETN3 MUTATED 2 1 1 0 3
CETN3 WILD-TYPE 86 65 44 55 44
'CUBN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00561 (Fisher's exact test), Q value = 0.041

Table S3846.  Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CUBN MUTATED 21 31 4 1
CUBN WILD-TYPE 183 106 43 2

Figure S1667.  Get High-res Image Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CUBN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00918 (Fisher's exact test), Q value = 0.054

Table S3847.  Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CUBN MUTATED 4 22 5 9 4
CUBN WILD-TYPE 35 74 39 79 76

Figure S1668.  Get High-res Image Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CUBN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.47

Table S3848.  Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CUBN MUTATED 4 17 13 8 10
CUBN WILD-TYPE 22 62 60 74 48
'CUBN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0706 (Fisher's exact test), Q value = 0.18

Table S3849.  Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CUBN MUTATED 19 15 9 9
CUBN WILD-TYPE 108 36 62 60
'CUBN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 0.21

Table S3850.  Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CUBN MUTATED 10 8 20 8 8
CUBN WILD-TYPE 74 77 65 61 39
'CUBN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.35

Table S3851.  Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CUBN MUTATED 14 7 16 17
CUBN WILD-TYPE 81 67 105 63
'CUBN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.078

Table S3852.  Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CUBN MUTATED 12 17 9 9 5 6
CUBN WILD-TYPE 40 47 63 95 35 53

Figure S1669.  Get High-res Image Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CUBN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S3853.  Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CUBN MUTATED 36 9 13
CUBN WILD-TYPE 181 66 86
'CUBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.78

Table S3854.  Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CUBN MUTATED 15 12 11
CUBN WILD-TYPE 106 96 61
'CUBN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0322 (Fisher's exact test), Q value = 0.11

Table S3855.  Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CUBN MUTATED 9 5 6 5 13
CUBN WILD-TYPE 79 61 39 50 34

Figure S1670.  Get High-res Image Gene #386: 'CUBN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRMT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.16

Table S3856.  Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TRMT6 MUTATED 1 6 0 0
TRMT6 WILD-TYPE 203 131 47 3
'TRMT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S3857.  Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TRMT6 MUTATED 0 3 1 1 1
TRMT6 WILD-TYPE 39 93 43 87 79
'TRMT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S3858.  Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TRMT6 MUTATED 1 3 2 0 1
TRMT6 WILD-TYPE 25 76 71 82 57
'TRMT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S3859.  Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TRMT6 MUTATED 3 4 0 0
TRMT6 WILD-TYPE 124 47 71 69

Figure S1671.  Get High-res Image Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRMT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.35

Table S3860.  Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TRMT6 MUTATED 1 0 4 1 1
TRMT6 WILD-TYPE 83 85 81 68 46
'TRMT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.74

Table S3861.  Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TRMT6 MUTATED 2 0 3 2
TRMT6 WILD-TYPE 93 74 118 78
'TRMT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S3862.  Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TRMT6 MUTATED 3 2 1 1 0 0
TRMT6 WILD-TYPE 49 62 71 103 40 59
'TRMT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S3863.  Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TRMT6 MUTATED 4 0 3
TRMT6 WILD-TYPE 213 75 96
'TRMT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.58

Table S3864.  Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TRMT6 MUTATED 2 0 1
TRMT6 WILD-TYPE 119 108 71
'TRMT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.13

Table S3865.  Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TRMT6 MUTATED 0 0 1 0 2
TRMT6 WILD-TYPE 88 66 44 55 45

Figure S1672.  Get High-res Image Gene #387: 'TRMT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00903 (Fisher's exact test), Q value = 0.054

Table S3866.  Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ATM MUTATED 12 23 3 0
ATM WILD-TYPE 192 114 44 3

Figure S1673.  Get High-res Image Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00491 (Fisher's exact test), Q value = 0.038

Table S3867.  Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ATM MUTATED 6 13 6 1 7
ATM WILD-TYPE 33 83 38 87 73

Figure S1674.  Get High-res Image Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S3868.  Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ATM MUTATED 3 11 7 4 8
ATM WILD-TYPE 23 68 66 78 50
'ATM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.069

Table S3869.  Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ATM MUTATED 9 10 11 3
ATM WILD-TYPE 118 41 60 66

Figure S1675.  Get High-res Image Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00292 (Fisher's exact test), Q value = 0.029

Table S3870.  Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ATM MUTATED 1 10 15 5 5
ATM WILD-TYPE 83 75 70 64 42

Figure S1676.  Get High-res Image Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ATM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.079

Table S3871.  Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ATM MUTATED 10 7 5 14
ATM WILD-TYPE 85 67 116 66

Figure S1677.  Get High-res Image Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00186 (Fisher's exact test), Q value = 0.022

Table S3872.  Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ATM MUTATED 7 13 8 8 2 0
ATM WILD-TYPE 45 51 64 96 38 59

Figure S1678.  Get High-res Image Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00319 (Fisher's exact test), Q value = 0.03

Table S3873.  Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ATM MUTATED 29 7 2
ATM WILD-TYPE 188 68 97

Figure S1679.  Get High-res Image Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 0.92

Table S3874.  Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ATM MUTATED 11 10 8
ATM WILD-TYPE 110 98 64
'ATM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S3875.  Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ATM MUTATED 9 6 6 0 8
ATM WILD-TYPE 79 60 39 55 39

Figure S1680.  Get High-res Image Gene #388: 'ATM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PMEPA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00957 (Fisher's exact test), Q value = 0.055

Table S3876.  Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PMEPA1 MUTATED 0 6 0 0
PMEPA1 WILD-TYPE 204 131 47 3

Figure S1681.  Get High-res Image Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PMEPA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.17

Table S3877.  Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PMEPA1 MUTATED 0 3 2 0 0
PMEPA1 WILD-TYPE 39 93 42 88 80
'PMEPA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.46

Table S3878.  Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PMEPA1 MUTATED 0 3 1 0 2
PMEPA1 WILD-TYPE 26 76 72 82 56
'PMEPA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0296 (Fisher's exact test), Q value = 0.11

Table S3879.  Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PMEPA1 MUTATED 0 3 2 1
PMEPA1 WILD-TYPE 127 48 69 68

Figure S1682.  Get High-res Image Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PMEPA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S3880.  Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PMEPA1 MUTATED 0 2 3 0 1
PMEPA1 WILD-TYPE 84 83 82 69 46
'PMEPA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00769 (Fisher's exact test), Q value = 0.049

Table S3881.  Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PMEPA1 MUTATED 0 2 0 4
PMEPA1 WILD-TYPE 95 72 121 76

Figure S1683.  Get High-res Image Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.16

Table S3882.  Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PMEPA1 MUTATED 2 3 1 0 0 0
PMEPA1 WILD-TYPE 50 61 71 104 40 59
'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S3883.  Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PMEPA1 MUTATED 6 0 0
PMEPA1 WILD-TYPE 211 75 99
'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S3884.  Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PMEPA1 MUTATED 3 0 2
PMEPA1 WILD-TYPE 118 108 70
'PMEPA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.17

Table S3885.  Gene #389: 'PMEPA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PMEPA1 MUTATED 1 0 1 0 3
PMEPA1 WILD-TYPE 87 66 44 55 44
'POP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S3886.  Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
POP1 MUTATED 5 11 2 0
POP1 WILD-TYPE 199 126 45 3
'POP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.58

Table S3887.  Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
POP1 MUTATED 1 7 2 2 2
POP1 WILD-TYPE 38 89 42 86 78
'POP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.33

Table S3888.  Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
POP1 MUTATED 3 7 3 2 2
POP1 WILD-TYPE 23 72 70 80 56
'POP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0497 (Fisher's exact test), Q value = 0.14

Table S3889.  Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
POP1 MUTATED 4 7 4 2
POP1 WILD-TYPE 123 44 67 67

Figure S1684.  Get High-res Image Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00182 (Fisher's exact test), Q value = 0.022

Table S3890.  Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
POP1 MUTATED 3 3 12 1 0
POP1 WILD-TYPE 81 82 73 68 47

Figure S1685.  Get High-res Image Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'POP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00359 (Fisher's exact test), Q value = 0.032

Table S3891.  Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
POP1 MUTATED 2 3 3 11
POP1 WILD-TYPE 93 71 118 69

Figure S1686.  Get High-res Image Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.31

Table S3892.  Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
POP1 MUTATED 4 5 5 2 0 3
POP1 WILD-TYPE 48 59 67 102 40 56
'POP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.11

Table S3893.  Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
POP1 MUTATED 15 0 4
POP1 WILD-TYPE 202 75 95

Figure S1687.  Get High-res Image Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'POP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S3894.  Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
POP1 MUTATED 7 2 4
POP1 WILD-TYPE 114 106 68
'POP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0785 (Fisher's exact test), Q value = 0.19

Table S3895.  Gene #390: 'POP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
POP1 MUTATED 4 0 2 2 5
POP1 WILD-TYPE 84 66 43 53 42
'EPHA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S3896.  Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EPHA2 MUTATED 3 21 2 0
EPHA2 WILD-TYPE 201 116 45 3

Figure S1688.  Get High-res Image Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00026 (Fisher's exact test), Q value = 0.0072

Table S3897.  Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EPHA2 MUTATED 2 17 2 1 3
EPHA2 WILD-TYPE 37 79 42 87 77

Figure S1689.  Get High-res Image Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.11

Table S3898.  Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EPHA2 MUTATED 3 5 6 0 3
EPHA2 WILD-TYPE 23 74 67 82 55

Figure S1690.  Get High-res Image Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-04 (Fisher's exact test), Q value = 0.0091

Table S3899.  Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EPHA2 MUTATED 4 9 4 0
EPHA2 WILD-TYPE 123 42 67 69

Figure S1691.  Get High-res Image Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00659 (Fisher's exact test), Q value = 0.045

Table S3900.  Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EPHA2 MUTATED 1 3 12 7 4
EPHA2 WILD-TYPE 83 82 73 62 43

Figure S1692.  Get High-res Image Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00758 (Fisher's exact test), Q value = 0.049

Table S3901.  Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EPHA2 MUTATED 10 3 3 11
EPHA2 WILD-TYPE 85 71 118 69

Figure S1693.  Get High-res Image Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00487 (Fisher's exact test), Q value = 0.038

Table S3902.  Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EPHA2 MUTATED 9 6 5 2 4 1
EPHA2 WILD-TYPE 43 58 67 102 36 58

Figure S1694.  Get High-res Image Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00117 (Fisher's exact test), Q value = 0.017

Table S3903.  Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EPHA2 MUTATED 24 1 2
EPHA2 WILD-TYPE 193 74 97

Figure S1695.  Get High-res Image Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S3904.  Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EPHA2 MUTATED 12 4 7
EPHA2 WILD-TYPE 109 104 65
'EPHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0067

Table S3905.  Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EPHA2 MUTATED 7 2 3 0 11
EPHA2 WILD-TYPE 81 64 42 55 36

Figure S1696.  Get High-res Image Gene #391: 'EPHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S3906.  Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MPRIP MUTATED 0 15 2 0
MPRIP WILD-TYPE 204 122 45 3

Figure S1697.  Get High-res Image Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MPRIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.016

Table S3907.  Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MPRIP MUTATED 0 10 1 0 1
MPRIP WILD-TYPE 39 86 43 88 79

Figure S1698.  Get High-res Image Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MPRIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.068

Table S3908.  Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MPRIP MUTATED 0 4 6 0 6
MPRIP WILD-TYPE 26 75 67 82 52

Figure S1699.  Get High-res Image Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MPRIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S3909.  Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MPRIP MUTATED 3 11 2 0
MPRIP WILD-TYPE 124 40 69 69

Figure S1700.  Get High-res Image Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.064

Table S3910.  Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MPRIP MUTATED 0 2 6 2 5
MPRIP WILD-TYPE 84 83 79 67 42

Figure S1701.  Get High-res Image Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MPRIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S3911.  Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MPRIP MUTATED 4 0 0 11
MPRIP WILD-TYPE 91 74 121 69

Figure S1702.  Get High-res Image Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00573 (Fisher's exact test), Q value = 0.042

Table S3912.  Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MPRIP MUTATED 5 7 3 2 0 0
MPRIP WILD-TYPE 47 57 69 102 40 59

Figure S1703.  Get High-res Image Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S3913.  Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MPRIP MUTATED 15 0 2
MPRIP WILD-TYPE 202 75 97

Figure S1704.  Get High-res Image Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MPRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S3914.  Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MPRIP MUTATED 5 2 4
MPRIP WILD-TYPE 116 106 68
'MPRIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00072 (Fisher's exact test), Q value = 0.013

Table S3915.  Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MPRIP MUTATED 1 1 2 0 7
MPRIP WILD-TYPE 87 65 43 55 40

Figure S1705.  Get High-res Image Gene #392: 'MPRIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LARP1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.1

Table S3916.  Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LARP1B MUTATED 2 9 1 0
LARP1B WILD-TYPE 202 128 46 3

Figure S1706.  Get High-res Image Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LARP1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00851 (Fisher's exact test), Q value = 0.052

Table S3917.  Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LARP1B MUTATED 0 8 1 1 0
LARP1B WILD-TYPE 39 88 43 87 80

Figure S1707.  Get High-res Image Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LARP1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S3918.  Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LARP1B MUTATED 0 4 3 0 3
LARP1B WILD-TYPE 26 75 70 82 55
'LARP1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.042 (Fisher's exact test), Q value = 0.13

Table S3919.  Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LARP1B MUTATED 2 5 2 1
LARP1B WILD-TYPE 125 46 69 68

Figure S1708.  Get High-res Image Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LARP1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.832 (Fisher's exact test), Q value = 0.88

Table S3920.  Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LARP1B MUTATED 1 3 2 2 2
LARP1B WILD-TYPE 83 82 83 67 45
'LARP1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.51

Table S3921.  Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LARP1B MUTATED 3 3 1 3
LARP1B WILD-TYPE 92 71 120 77
'LARP1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S3922.  Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LARP1B MUTATED 4 3 1 2 1 1
LARP1B WILD-TYPE 48 61 71 102 39 58
'LARP1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.45

Table S3923.  Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LARP1B MUTATED 9 2 1
LARP1B WILD-TYPE 208 73 98
'LARP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S3924.  Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LARP1B MUTATED 5 2 3
LARP1B WILD-TYPE 116 106 69
'LARP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S3925.  Gene #393: 'LARP1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LARP1B MUTATED 3 2 1 0 4
LARP1B WILD-TYPE 85 64 44 55 43
'EIF5A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.1

Table S3926.  Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EIF5A2 MUTATED 0 5 0 0
EIF5A2 WILD-TYPE 204 132 47 3

Figure S1709.  Get High-res Image Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EIF5A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0824 (Fisher's exact test), Q value = 0.19

Table S3927.  Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EIF5A2 MUTATED 0 4 1 0 0
EIF5A2 WILD-TYPE 39 92 43 88 80
'EIF5A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S3928.  Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EIF5A2 MUTATED 1 1 1 0 1
EIF5A2 WILD-TYPE 25 78 72 82 57
'EIF5A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S3929.  Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EIF5A2 MUTATED 1 2 1 0
EIF5A2 WILD-TYPE 126 49 70 69
'EIF5A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.727 (Fisher's exact test), Q value = 0.8

Table S3930.  Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EIF5A2 MUTATED 0 2 1 1 1
EIF5A2 WILD-TYPE 84 83 84 68 46
'EIF5A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0484 (Fisher's exact test), Q value = 0.14

Table S3931.  Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EIF5A2 MUTATED 2 0 0 3
EIF5A2 WILD-TYPE 93 74 121 77

Figure S1710.  Get High-res Image Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EIF5A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 0.92

Table S3932.  Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EIF5A2 MUTATED 1 1 1 1 1 0
EIF5A2 WILD-TYPE 51 63 71 103 39 59
'EIF5A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 0.88

Table S3933.  Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EIF5A2 MUTATED 4 0 1
EIF5A2 WILD-TYPE 213 75 98
'EIF5A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 0.72

Table S3934.  Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EIF5A2 MUTATED 1 2 2
EIF5A2 WILD-TYPE 120 106 70
'EIF5A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S3935.  Gene #394: 'EIF5A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EIF5A2 MUTATED 2 0 1 0 2
EIF5A2 WILD-TYPE 86 66 44 55 45
'RING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0772 (Fisher's exact test), Q value = 0.19

Table S3936.  Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RING1 MUTATED 1 5 2 0
RING1 WILD-TYPE 203 132 45 3
'RING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.5

Table S3937.  Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RING1 MUTATED 1 3 0 0 2
RING1 WILD-TYPE 38 93 44 88 78
'RING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S3938.  Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RING1 MUTATED 1 2 4 1 0
RING1 WILD-TYPE 25 77 69 81 58
'RING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 0.92

Table S3939.  Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RING1 MUTATED 3 2 2 1
RING1 WILD-TYPE 124 49 69 68
'RING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S3940.  Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RING1 MUTATED 0 2 4 1 0
RING1 WILD-TYPE 84 83 81 68 47
'RING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.715 (Fisher's exact test), Q value = 0.79

Table S3941.  Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RING1 MUTATED 2 2 1 2
RING1 WILD-TYPE 93 72 120 78
'RING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00981 (Fisher's exact test), Q value = 0.056

Table S3942.  Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RING1 MUTATED 1 5 2 0 0 0
RING1 WILD-TYPE 51 59 70 104 40 59

Figure S1711.  Get High-res Image Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S3943.  Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RING1 MUTATED 7 0 1
RING1 WILD-TYPE 210 75 98
'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.079

Table S3944.  Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RING1 MUTATED 1 0 4
RING1 WILD-TYPE 120 108 68

Figure S1712.  Get High-res Image Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.14

Table S3945.  Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RING1 MUTATED 2 0 3 0 0
RING1 WILD-TYPE 86 66 42 55 47

Figure S1713.  Get High-res Image Gene #395: 'RING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM83E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00775 (Fisher's exact test), Q value = 0.049

Table S3946.  Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM83E MUTATED 1 9 2 0
FAM83E WILD-TYPE 203 128 45 3

Figure S1714.  Get High-res Image Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM83E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.066

Table S3947.  Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM83E MUTATED 1 8 1 0 1
FAM83E WILD-TYPE 38 88 43 88 79

Figure S1715.  Get High-res Image Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM83E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.766 (Fisher's exact test), Q value = 0.83

Table S3948.  Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM83E MUTATED 1 3 3 1 2
FAM83E WILD-TYPE 25 76 70 81 56
'FAM83E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.009

Table S3949.  Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM83E MUTATED 1 7 1 1
FAM83E WILD-TYPE 126 44 70 68

Figure S1716.  Get High-res Image Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM83E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00381 (Fisher's exact test), Q value = 0.033

Table S3950.  Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM83E MUTATED 0 1 8 1 2
FAM83E WILD-TYPE 84 84 77 68 45

Figure S1717.  Get High-res Image Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM83E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.08

Table S3951.  Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM83E MUTATED 3 1 1 7
FAM83E WILD-TYPE 92 73 120 73

Figure S1718.  Get High-res Image Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM83E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 0.041

Table S3952.  Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM83E MUTATED 4 4 2 0 3 0
FAM83E WILD-TYPE 48 60 70 104 37 59

Figure S1719.  Get High-res Image Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM83E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S3953.  Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM83E MUTATED 11 1 1
FAM83E WILD-TYPE 206 74 98
'FAM83E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.17

Table S3954.  Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM83E MUTATED 4 1 5
FAM83E WILD-TYPE 117 107 67
'FAM83E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0018 (Fisher's exact test), Q value = 0.022

Table S3955.  Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM83E MUTATED 2 0 2 0 6
FAM83E WILD-TYPE 86 66 43 55 41

Figure S1720.  Get High-res Image Gene #396: 'FAM83E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CLDN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00092 (Fisher's exact test), Q value = 0.015

Table S3956.  Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CLDN6 MUTATED 0 9 0 0
CLDN6 WILD-TYPE 204 128 47 3

Figure S1721.  Get High-res Image Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CLDN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00962 (Fisher's exact test), Q value = 0.056

Table S3957.  Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CLDN6 MUTATED 1 6 0 0 0
CLDN6 WILD-TYPE 38 90 44 88 80

Figure S1722.  Get High-res Image Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLDN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.31

Table S3958.  Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CLDN6 MUTATED 1 1 2 0 3
CLDN6 WILD-TYPE 25 78 71 82 55
'CLDN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.12

Table S3959.  Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CLDN6 MUTATED 2 4 0 1
CLDN6 WILD-TYPE 125 47 71 68

Figure S1723.  Get High-res Image Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CLDN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.35

Table S3960.  Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CLDN6 MUTATED 1 3 2 0 3
CLDN6 WILD-TYPE 83 82 83 69 44
'CLDN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00573 (Fisher's exact test), Q value = 0.042

Table S3961.  Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CLDN6 MUTATED 2 1 0 6
CLDN6 WILD-TYPE 93 73 121 74

Figure S1724.  Get High-res Image Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.1

Table S3962.  Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CLDN6 MUTATED 4 1 1 0 2 1
CLDN6 WILD-TYPE 48 63 71 104 38 58

Figure S1725.  Get High-res Image Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CLDN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S3963.  Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CLDN6 MUTATED 6 0 3
CLDN6 WILD-TYPE 211 75 96
'CLDN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 0.17

Table S3964.  Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CLDN6 MUTATED 6 1 0
CLDN6 WILD-TYPE 115 107 72
'CLDN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0499 (Fisher's exact test), Q value = 0.14

Table S3965.  Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CLDN6 MUTATED 4 0 0 0 3
CLDN6 WILD-TYPE 84 66 45 55 44

Figure S1726.  Get High-res Image Gene #397: 'CLDN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SULF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.014

Table S3966.  Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SULF1 MUTATED 4 14 5 1
SULF1 WILD-TYPE 200 123 42 2

Figure S1727.  Get High-res Image Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SULF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S3967.  Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SULF1 MUTATED 4 8 3 2 4
SULF1 WILD-TYPE 35 88 41 86 76
'SULF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.28

Table S3968.  Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SULF1 MUTATED 3 8 4 2 2
SULF1 WILD-TYPE 23 71 69 80 56
'SULF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.606 (Fisher's exact test), Q value = 0.7

Table S3969.  Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SULF1 MUTATED 6 4 6 3
SULF1 WILD-TYPE 121 47 65 66
'SULF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00982 (Fisher's exact test), Q value = 0.056

Table S3970.  Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SULF1 MUTATED 0 4 9 4 5
SULF1 WILD-TYPE 84 81 76 65 42

Figure S1728.  Get High-res Image Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SULF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S3971.  Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SULF1 MUTATED 7 7 1 7
SULF1 WILD-TYPE 88 67 120 73

Figure S1729.  Get High-res Image Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SULF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00664 (Fisher's exact test), Q value = 0.045

Table S3972.  Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SULF1 MUTATED 4 10 2 5 3 0
SULF1 WILD-TYPE 48 54 70 99 37 59

Figure S1730.  Get High-res Image Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SULF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.086

Table S3973.  Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SULF1 MUTATED 20 2 2
SULF1 WILD-TYPE 197 73 97

Figure S1731.  Get High-res Image Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SULF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.32

Table S3974.  Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SULF1 MUTATED 6 5 8
SULF1 WILD-TYPE 115 103 64
'SULF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0288 (Fisher's exact test), Q value = 0.1

Table S3975.  Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SULF1 MUTATED 7 2 6 0 4
SULF1 WILD-TYPE 81 64 39 55 43

Figure S1732.  Get High-res Image Gene #398: 'SULF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PCGF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.063

Table S3976.  Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PCGF3 MUTATED 0 6 1 0
PCGF3 WILD-TYPE 204 131 46 3

Figure S1733.  Get High-res Image Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCGF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00226 (Fisher's exact test), Q value = 0.025

Table S3977.  Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PCGF3 MUTATED 0 7 0 0 0
PCGF3 WILD-TYPE 39 89 44 88 80

Figure S1734.  Get High-res Image Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCGF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.42

Table S3978.  Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PCGF3 MUTATED 0 1 3 0 2
PCGF3 WILD-TYPE 26 78 70 82 56
'PCGF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00049 (Fisher's exact test), Q value = 0.011

Table S3979.  Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PCGF3 MUTATED 0 5 1 0
PCGF3 WILD-TYPE 127 46 70 69

Figure S1735.  Get High-res Image Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PCGF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.092

Table S3980.  Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PCGF3 MUTATED 0 0 3 1 3
PCGF3 WILD-TYPE 84 85 82 68 44

Figure S1736.  Get High-res Image Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PCGF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-04 (Fisher's exact test), Q value = 0.013

Table S3981.  Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PCGF3 MUTATED 1 0 0 6
PCGF3 WILD-TYPE 94 74 121 74

Figure S1737.  Get High-res Image Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00071 (Fisher's exact test), Q value = 0.013

Table S3982.  Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PCGF3 MUTATED 5 0 2 0 0 0
PCGF3 WILD-TYPE 47 64 70 104 40 59

Figure S1738.  Get High-res Image Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCGF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0757 (Fisher's exact test), Q value = 0.18

Table S3983.  Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PCGF3 MUTATED 7 0 0
PCGF3 WILD-TYPE 210 75 99
'PCGF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.55

Table S3984.  Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PCGF3 MUTATED 3 1 3
PCGF3 WILD-TYPE 118 107 69
'PCGF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.076

Table S3985.  Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PCGF3 MUTATED 3 0 0 0 4
PCGF3 WILD-TYPE 85 66 45 55 43

Figure S1739.  Get High-res Image Gene #399: 'PCGF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SF3B2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00127 (Fisher's exact test), Q value = 0.018

Table S3986.  Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SF3B2 MUTATED 2 13 1 0
SF3B2 WILD-TYPE 202 124 46 3

Figure S1740.  Get High-res Image Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SF3B2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.35

Table S3987.  Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SF3B2 MUTATED 2 7 1 1 2
SF3B2 WILD-TYPE 37 89 43 87 78
'SF3B2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S3988.  Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SF3B2 MUTATED 3 5 2 1 2
SF3B2 WILD-TYPE 23 74 71 81 56
'SF3B2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0491 (Fisher's exact test), Q value = 0.14

Table S3989.  Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SF3B2 MUTATED 4 6 2 1
SF3B2 WILD-TYPE 123 45 69 68

Figure S1741.  Get High-res Image Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00967 (Fisher's exact test), Q value = 0.056

Table S3990.  Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SF3B2 MUTATED 0 4 8 2 0
SF3B2 WILD-TYPE 84 81 77 67 47

Figure S1742.  Get High-res Image Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SF3B2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S3991.  Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SF3B2 MUTATED 3 3 2 6
SF3B2 WILD-TYPE 92 71 119 74
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S3992.  Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SF3B2 MUTATED 4 6 2 3 0 1
SF3B2 WILD-TYPE 48 58 70 101 40 58
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S3993.  Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SF3B2 MUTATED 13 2 1
SF3B2 WILD-TYPE 204 73 98
'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.1

Table S3994.  Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SF3B2 MUTATED 3 2 7
SF3B2 WILD-TYPE 118 106 65

Figure S1743.  Get High-res Image Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SF3B2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.05 (Fisher's exact test), Q value = 0.14

Table S3995.  Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SF3B2 MUTATED 3 1 4 0 4
SF3B2 WILD-TYPE 85 65 41 55 43

Figure S1744.  Get High-res Image Gene #400: 'SF3B2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C19ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.62

Table S3996.  Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C19ORF70 MUTATED 2 3 1 0
C19ORF70 WILD-TYPE 202 134 46 3
'C19ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.19

Table S3997.  Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C19ORF70 MUTATED 0 4 1 0 0
C19ORF70 WILD-TYPE 39 92 43 88 80
'C19ORF70 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.17

Table S3998.  Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C19ORF70 MUTATED 0 4 0 0 1
C19ORF70 WILD-TYPE 26 75 73 82 57
'C19ORF70 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0637 (Fisher's exact test), Q value = 0.17

Table S3999.  Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C19ORF70 MUTATED 1 3 1 0
C19ORF70 WILD-TYPE 126 48 70 69
'C19ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.5

Table S4000.  Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C19ORF70 MUTATED 0 1 3 1 0
C19ORF70 WILD-TYPE 84 84 82 68 47
'C19ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.14

Table S4001.  Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C19ORF70 MUTATED 2 0 0 3
C19ORF70 WILD-TYPE 93 74 121 77

Figure S1745.  Get High-res Image Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.62

Table S4002.  Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C19ORF70 MUTATED 1 1 3 1 0 0
C19ORF70 WILD-TYPE 51 63 69 103 40 59
'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S4003.  Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C19ORF70 MUTATED 6 0 0
C19ORF70 WILD-TYPE 211 75 99
'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.8

Table S4004.  Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C19ORF70 MUTATED 2 1 2
C19ORF70 WILD-TYPE 119 107 70
'C19ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00628 (Fisher's exact test), Q value = 0.044

Table S4005.  Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C19ORF70 MUTATED 1 0 0 0 4
C19ORF70 WILD-TYPE 87 66 45 55 43

Figure S1746.  Get High-res Image Gene #401: 'C19ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RNASEH2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.57

Table S4006.  Gene #402: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RNASEH2B MUTATED 1 2 1 0
RNASEH2B WILD-TYPE 203 135 46 3
'RNASEH2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S4007.  Gene #402: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RNASEH2B MUTATED 1 2 1 0 0
RNASEH2B WILD-TYPE 38 94 43 88 80
'RNASEH2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.7

Table S4008.  Gene #402: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RNASEH2B MUTATED 0 1 2 0 1
RNASEH2B WILD-TYPE 26 78 71 82 57
'RNASEH2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 0.94

Table S4009.  Gene #402: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RNASEH2B MUTATED 1 1 1 1
RNASEH2B WILD-TYPE 126 50 70 68
'RNASEH2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S4010.  Gene #402: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RNASEH2B MUTATED 0 2 1 1 0
RNASEH2B WILD-TYPE 84 83 84 68 47
'RNASEH2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.41

Table S4011.  Gene #402: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RNASEH2B MUTATED 1 1 0 2
RNASEH2B WILD-TYPE 94 73 121 78
'RNASEH2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 0.88

Table S4012.  Gene #402: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RNASEH2B MUTATED 1 0 1 2 0 0
RNASEH2B WILD-TYPE 51 64 71 102 40 59
'RNASEH2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4013.  Gene #402: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RNASEH2B MUTATED 2 1 1
RNASEH2B WILD-TYPE 215 74 98
'RNASEH2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.71

Table S4014.  Gene #402: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RNASEH2B MUTATED 1 2 0
RNASEH2B WILD-TYPE 120 106 72
'RNASEH2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.81 (Fisher's exact test), Q value = 0.86

Table S4015.  Gene #402: 'RNASEH2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RNASEH2B MUTATED 2 1 0 0 0
RNASEH2B WILD-TYPE 86 65 45 55 47
'GPR161 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.11

Table S4016.  Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPR161 MUTATED 2 9 1 0
GPR161 WILD-TYPE 202 128 46 3

Figure S1747.  Get High-res Image Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR161 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S4017.  Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPR161 MUTATED 1 5 1 0 1
GPR161 WILD-TYPE 38 91 43 88 79
'GPR161 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.21

Table S4018.  Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPR161 MUTATED 1 5 1 0 2
GPR161 WILD-TYPE 25 74 72 82 56
'GPR161 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0772 (Fisher's exact test), Q value = 0.19

Table S4019.  Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPR161 MUTATED 3 4 2 0
GPR161 WILD-TYPE 124 47 69 69
'GPR161 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S4020.  Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPR161 MUTATED 1 1 4 4 0
GPR161 WILD-TYPE 83 84 81 65 47
'GPR161 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.096

Table S4021.  Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPR161 MUTATED 7 1 1 1
GPR161 WILD-TYPE 88 73 120 79

Figure S1748.  Get High-res Image Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR161 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S4022.  Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPR161 MUTATED 3 5 1 2 1 0
GPR161 WILD-TYPE 49 59 71 102 39 59
'GPR161 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.44

Table S4023.  Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPR161 MUTATED 9 2 1
GPR161 WILD-TYPE 208 73 98
'GPR161 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 0.94

Table S4024.  Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPR161 MUTATED 4 2 2
GPR161 WILD-TYPE 117 106 70
'GPR161 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.52

Table S4025.  Gene #403: 'GPR161 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPR161 MUTATED 2 2 1 0 3
GPR161 WILD-TYPE 86 64 44 55 44
'RRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S4026.  Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RRS1 MUTATED 1 5 1 0
RRS1 WILD-TYPE 203 132 46 3
'RRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.71

Table S4027.  Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RRS1 MUTATED 1 2 1 1 0
RRS1 WILD-TYPE 38 94 43 87 80
'RRS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.21

Table S4028.  Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RRS1 MUTATED 2 1 1 0 1
RRS1 WILD-TYPE 24 78 72 82 57
'RRS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.76 (Fisher's exact test), Q value = 0.82

Table S4029.  Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RRS1 MUTATED 3 1 1 0
RRS1 WILD-TYPE 124 50 70 69
'RRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.85

Table S4030.  Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RRS1 MUTATED 2 2 2 0 1
RRS1 WILD-TYPE 82 83 83 69 46
'RRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.084

Table S4031.  Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RRS1 MUTATED 1 0 1 5
RRS1 WILD-TYPE 94 74 120 75

Figure S1749.  Get High-res Image Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 0.96

Table S4032.  Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RRS1 MUTATED 2 1 1 2 0 1
RRS1 WILD-TYPE 50 63 71 102 40 58
'RRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S4033.  Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RRS1 MUTATED 6 0 1
RRS1 WILD-TYPE 211 75 98
'RRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.89

Table S4034.  Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RRS1 MUTATED 3 1 1
RRS1 WILD-TYPE 118 107 71
'RRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 0.53

Table S4035.  Gene #404: 'RRS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RRS1 MUTATED 3 0 1 0 1
RRS1 WILD-TYPE 85 66 44 55 46
'ZCRB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00999 (Fisher's exact test), Q value = 0.057

Table S4036.  Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZCRB1 MUTATED 0 6 0 0
ZCRB1 WILD-TYPE 204 131 47 3

Figure S1750.  Get High-res Image Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZCRB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.083

Table S4037.  Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZCRB1 MUTATED 0 5 0 0 0
ZCRB1 WILD-TYPE 39 91 44 88 80

Figure S1751.  Get High-res Image Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZCRB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.7

Table S4038.  Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZCRB1 MUTATED 0 1 2 0 1
ZCRB1 WILD-TYPE 26 78 71 82 57
'ZCRB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.063

Table S4039.  Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZCRB1 MUTATED 0 3 1 0
ZCRB1 WILD-TYPE 127 48 70 69

Figure S1752.  Get High-res Image Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZCRB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S4040.  Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZCRB1 MUTATED 0 1 4 1 0
ZCRB1 WILD-TYPE 84 84 81 68 47
'ZCRB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00292 (Fisher's exact test), Q value = 0.029

Table S4041.  Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZCRB1 MUTATED 1 0 0 5
ZCRB1 WILD-TYPE 94 74 121 75

Figure S1753.  Get High-res Image Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZCRB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.36

Table S4042.  Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZCRB1 MUTATED 3 1 1 1 0 0
ZCRB1 WILD-TYPE 49 63 71 103 40 59
'ZCRB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.65

Table S4043.  Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZCRB1 MUTATED 5 0 1
ZCRB1 WILD-TYPE 212 75 98
'ZCRB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4044.  Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZCRB1 MUTATED 1 1 1
ZCRB1 WILD-TYPE 120 107 71
'ZCRB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S4045.  Gene #405: 'ZCRB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZCRB1 MUTATED 1 0 0 0 2
ZCRB1 WILD-TYPE 87 66 45 55 45
'LINGO4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S4046.  Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LINGO4 MUTATED 2 7 1 0
LINGO4 WILD-TYPE 202 130 46 3
'LINGO4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S4047.  Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LINGO4 MUTATED 2 5 1 0 1
LINGO4 WILD-TYPE 37 91 43 88 79
'LINGO4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S4048.  Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LINGO4 MUTATED 0 3 2 2 2
LINGO4 WILD-TYPE 26 76 71 80 56
'LINGO4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S4049.  Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LINGO4 MUTATED 1 3 2 3
LINGO4 WILD-TYPE 126 48 69 66
'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S4050.  Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LINGO4 MUTATED 1 4 4 0 1
LINGO4 WILD-TYPE 83 81 81 69 46
'LINGO4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.089

Table S4051.  Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LINGO4 MUTATED 2 3 0 5
LINGO4 WILD-TYPE 93 71 121 75

Figure S1754.  Get High-res Image Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.52

Table S4052.  Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LINGO4 MUTATED 2 4 2 2 1 0
LINGO4 WILD-TYPE 50 60 70 102 39 59
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S4053.  Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LINGO4 MUTATED 9 1 1
LINGO4 WILD-TYPE 208 74 98
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S4054.  Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LINGO4 MUTATED 4 1 2
LINGO4 WILD-TYPE 117 107 70
'LINGO4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.59

Table S4055.  Gene #406: 'LINGO4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LINGO4 MUTATED 2 1 2 0 2
LINGO4 WILD-TYPE 86 65 43 55 45
'MAP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.14

Table S4056.  Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAP9 MUTATED 2 8 2 0
MAP9 WILD-TYPE 202 129 45 3

Figure S1755.  Get High-res Image Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00255 (Fisher's exact test), Q value = 0.027

Table S4057.  Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAP9 MUTATED 2 8 1 0 0
MAP9 WILD-TYPE 37 88 43 88 80

Figure S1756.  Get High-res Image Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.49

Table S4058.  Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAP9 MUTATED 0 5 2 1 3
MAP9 WILD-TYPE 26 74 71 81 55
'MAP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00948 (Fisher's exact test), Q value = 0.055

Table S4059.  Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAP9 MUTATED 2 5 4 0
MAP9 WILD-TYPE 125 46 67 69

Figure S1757.  Get High-res Image Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.088

Table S4060.  Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAP9 MUTATED 1 1 8 1 1
MAP9 WILD-TYPE 83 84 77 68 46

Figure S1758.  Get High-res Image Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.0079

Table S4061.  Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAP9 MUTATED 1 1 1 9
MAP9 WILD-TYPE 94 73 120 71

Figure S1759.  Get High-res Image Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.65

Table S4062.  Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAP9 MUTATED 4 2 3 2 1 1
MAP9 WILD-TYPE 48 62 69 102 39 58
'MAP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00272 (Fisher's exact test), Q value = 0.028

Table S4063.  Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAP9 MUTATED 13 0 0
MAP9 WILD-TYPE 204 75 99

Figure S1760.  Get High-res Image Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4064.  Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAP9 MUTATED 4 3 2
MAP9 WILD-TYPE 117 105 70
'MAP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0144 (Fisher's exact test), Q value = 0.069

Table S4065.  Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAP9 MUTATED 3 0 0 1 5
MAP9 WILD-TYPE 85 66 45 54 42

Figure S1761.  Get High-res Image Gene #407: 'MAP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0217 (Fisher's exact test), Q value = 0.088

Table S4066.  Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCDC27 MUTATED 1 7 0 0
CCDC27 WILD-TYPE 203 130 47 3

Figure S1762.  Get High-res Image Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S4067.  Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCDC27 MUTATED 0 3 2 0 2
CCDC27 WILD-TYPE 39 93 42 88 78
'CCDC27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.54

Table S4068.  Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCDC27 MUTATED 1 3 3 1 0
CCDC27 WILD-TYPE 25 76 70 81 58
'CCDC27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.33 (Fisher's exact test), Q value = 0.46

Table S4069.  Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCDC27 MUTATED 3 2 3 0
CCDC27 WILD-TYPE 124 49 68 69
'CCDC27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S4070.  Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCDC27 MUTATED 0 2 4 0 1
CCDC27 WILD-TYPE 84 83 81 69 46
'CCDC27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 0.99

Table S4071.  Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCDC27 MUTATED 2 1 2 2
CCDC27 WILD-TYPE 93 73 119 78
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.67

Table S4072.  Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCDC27 MUTATED 1 3 2 2 0 0
CCDC27 WILD-TYPE 51 61 70 102 40 59
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 0.78

Table S4073.  Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCDC27 MUTATED 5 2 1
CCDC27 WILD-TYPE 212 73 98
'CCDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.071

Table S4074.  Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCDC27 MUTATED 0 2 4
CCDC27 WILD-TYPE 121 106 68

Figure S1763.  Get High-res Image Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0767 (Fisher's exact test), Q value = 0.19

Table S4075.  Gene #408: 'CCDC27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCDC27 MUTATED 0 3 2 0 1
CCDC27 WILD-TYPE 88 63 43 55 46
'DDX60 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.0082

Table S4076.  Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DDX60 MUTATED 1 13 1 0
DDX60 WILD-TYPE 203 124 46 3

Figure S1764.  Get High-res Image Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX60 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S4077.  Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DDX60 MUTATED 2 7 2 1 1
DDX60 WILD-TYPE 37 89 42 87 79
'DDX60 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.22

Table S4078.  Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DDX60 MUTATED 1 6 3 0 2
DDX60 WILD-TYPE 25 73 70 82 56
'DDX60 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00257 (Fisher's exact test), Q value = 0.027

Table S4079.  Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DDX60 MUTATED 2 6 4 0
DDX60 WILD-TYPE 125 45 67 69

Figure S1765.  Get High-res Image Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX60 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S4080.  Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DDX60 MUTATED 1 1 11 1 0
DDX60 WILD-TYPE 83 84 74 68 47

Figure S1766.  Get High-res Image Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDX60 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S4081.  Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DDX60 MUTATED 2 3 3 6
DDX60 WILD-TYPE 93 71 118 74
'DDX60 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S4082.  Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DDX60 MUTATED 4 5 2 3 0 1
DDX60 WILD-TYPE 48 59 70 101 40 58
'DDX60 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S4083.  Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DDX60 MUTATED 12 1 2
DDX60 WILD-TYPE 205 74 97
'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 0.22

Table S4084.  Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DDX60 MUTATED 2 2 5
DDX60 WILD-TYPE 119 106 67
'DDX60 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S4085.  Gene #409: 'DDX60 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DDX60 MUTATED 3 1 3 0 2
DDX60 WILD-TYPE 85 65 42 55 45
'ACTL6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00543 (Fisher's exact test), Q value = 0.041

Table S4086.  Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ACTL6A MUTATED 0 7 1 0
ACTL6A WILD-TYPE 204 130 46 3

Figure S1767.  Get High-res Image Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACTL6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00831 (Fisher's exact test), Q value = 0.051

Table S4087.  Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ACTL6A MUTATED 0 6 2 0 0
ACTL6A WILD-TYPE 39 90 42 88 80

Figure S1768.  Get High-res Image Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACTL6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S4088.  Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ACTL6A MUTATED 1 0 3 1 2
ACTL6A WILD-TYPE 25 79 70 81 56
'ACTL6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0368 (Fisher's exact test), Q value = 0.12

Table S4089.  Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ACTL6A MUTATED 2 4 0 1
ACTL6A WILD-TYPE 125 47 71 68

Figure S1769.  Get High-res Image Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.42

Table S4090.  Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ACTL6A MUTATED 0 1 3 2 2
ACTL6A WILD-TYPE 84 84 82 67 45
'ACTL6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S4091.  Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ACTL6A MUTATED 3 1 1 3
ACTL6A WILD-TYPE 92 73 120 77
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.43

Table S4092.  Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ACTL6A MUTATED 2 3 2 1 0 0
ACTL6A WILD-TYPE 50 61 70 103 40 59
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S4093.  Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ACTL6A MUTATED 7 1 0
ACTL6A WILD-TYPE 210 74 99
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S4094.  Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ACTL6A MUTATED 4 1 3
ACTL6A WILD-TYPE 117 107 69
'ACTL6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S4095.  Gene #410: 'ACTL6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ACTL6A MUTATED 3 1 3 0 1
ACTL6A WILD-TYPE 85 65 42 55 46
'PFKP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.024

Table S4096.  Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PFKP MUTATED 3 14 1 0
PFKP WILD-TYPE 201 123 46 3

Figure S1770.  Get High-res Image Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PFKP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.024

Table S4097.  Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PFKP MUTATED 0 8 4 1 0
PFKP WILD-TYPE 39 88 40 87 80

Figure S1771.  Get High-res Image Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PFKP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 0.17

Table S4098.  Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PFKP MUTATED 1 6 5 0 2
PFKP WILD-TYPE 25 73 68 82 56
'PFKP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.012

Table S4099.  Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PFKP MUTATED 2 7 5 0
PFKP WILD-TYPE 125 44 66 69

Figure S1772.  Get High-res Image Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S4100.  Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PFKP MUTATED 1 4 6 4 2
PFKP WILD-TYPE 83 81 79 65 45
'PFKP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S4101.  Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PFKP MUTATED 6 2 1 8
PFKP WILD-TYPE 89 72 120 72

Figure S1773.  Get High-res Image Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S4102.  Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PFKP MUTATED 3 9 2 2 1 1
PFKP WILD-TYPE 49 55 70 102 39 58

Figure S1774.  Get High-res Image Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PFKP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0018 (Fisher's exact test), Q value = 0.022

Table S4103.  Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PFKP MUTATED 17 0 1
PFKP WILD-TYPE 200 75 98

Figure S1775.  Get High-res Image Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.69

Table S4104.  Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PFKP MUTATED 5 2 3
PFKP WILD-TYPE 116 106 69
'PFKP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S4105.  Gene #411: 'PFKP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PFKP MUTATED 3 0 3 1 3
PFKP WILD-TYPE 85 66 42 54 44
'OR2J3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.37

Table S4106.  Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OR2J3 MUTATED 3 6 0 0
OR2J3 WILD-TYPE 201 131 47 3
'OR2J3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.11

Table S4107.  Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OR2J3 MUTATED 0 6 0 1 0
OR2J3 WILD-TYPE 39 90 44 87 80

Figure S1776.  Get High-res Image Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OR2J3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.67

Table S4108.  Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OR2J3 MUTATED 1 2 3 2 0
OR2J3 WILD-TYPE 25 77 70 80 58
'OR2J3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S4109.  Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OR2J3 MUTATED 1 3 1 3
OR2J3 WILD-TYPE 126 48 70 66
'OR2J3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 0.89

Table S4110.  Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OR2J3 MUTATED 2 1 2 2 2
OR2J3 WILD-TYPE 82 84 83 67 45
'OR2J3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0685 (Fisher's exact test), Q value = 0.17

Table S4111.  Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OR2J3 MUTATED 6 1 1 1
OR2J3 WILD-TYPE 89 73 120 79
'OR2J3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.2

Table S4112.  Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OR2J3 MUTATED 2 1 0 1 3 2
OR2J3 WILD-TYPE 50 63 72 103 37 57
'OR2J3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 0.94

Table S4113.  Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OR2J3 MUTATED 6 1 2
OR2J3 WILD-TYPE 211 74 97
'OR2J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.55

Table S4114.  Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OR2J3 MUTATED 3 1 3
OR2J3 WILD-TYPE 118 107 69
'OR2J3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S4115.  Gene #412: 'OR2J3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OR2J3 MUTATED 2 0 1 1 3
OR2J3 WILD-TYPE 86 66 44 54 44
'C20ORF160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S4116.  Gene #413: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C20ORF160 MUTATED 1 5 1 0
C20ORF160 WILD-TYPE 203 132 46 3
'C20ORF160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.43

Table S4117.  Gene #413: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C20ORF160 MUTATED 1 3 2 1 0
C20ORF160 WILD-TYPE 38 93 42 87 80
'C20ORF160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.57

Table S4118.  Gene #413: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C20ORF160 MUTATED 0 2 1 0 2
C20ORF160 WILD-TYPE 26 77 72 82 56
'C20ORF160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.59

Table S4119.  Gene #413: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C20ORF160 MUTATED 1 2 1 1
C20ORF160 WILD-TYPE 126 49 70 68
'C20ORF160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.15

Table S4120.  Gene #413: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C20ORF160 MUTATED 1 0 5 1 0
C20ORF160 WILD-TYPE 83 85 80 68 47
'C20ORF160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S4121.  Gene #413: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C20ORF160 MUTATED 2 0 1 4
C20ORF160 WILD-TYPE 93 74 120 76
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.7

Table S4122.  Gene #413: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C20ORF160 MUTATED 1 3 1 1 0 1
C20ORF160 WILD-TYPE 51 61 71 103 40 58
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.51

Table S4123.  Gene #413: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C20ORF160 MUTATED 6 0 1
C20ORF160 WILD-TYPE 211 75 98
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.74

Table S4124.  Gene #413: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C20ORF160 MUTATED 3 1 2
C20ORF160 WILD-TYPE 118 107 70
'C20ORF160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S4125.  Gene #413: 'C20ORF160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C20ORF160 MUTATED 1 0 2 1 2
C20ORF160 WILD-TYPE 87 66 43 54 45
'SGK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.16

Table S4126.  Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SGK3 MUTATED 1 6 0 0
SGK3 WILD-TYPE 203 131 47 3
'SGK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S4127.  Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SGK3 MUTATED 0 3 1 0 0
SGK3 WILD-TYPE 39 93 43 88 80
'SGK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.4

Table S4128.  Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SGK3 MUTATED 0 4 2 0 1
SGK3 WILD-TYPE 26 75 71 82 57
'SGK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00141 (Fisher's exact test), Q value = 0.019

Table S4129.  Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SGK3 MUTATED 0 4 3 0
SGK3 WILD-TYPE 127 47 68 69

Figure S1777.  Get High-res Image Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SGK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.27

Table S4130.  Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SGK3 MUTATED 0 3 3 0 0
SGK3 WILD-TYPE 84 82 82 69 47
'SGK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00176 (Fisher's exact test), Q value = 0.022

Table S4131.  Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SGK3 MUTATED 0 1 0 5
SGK3 WILD-TYPE 95 73 121 75

Figure S1778.  Get High-res Image Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SGK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S4132.  Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SGK3 MUTATED 1 3 0 3 0 0
SGK3 WILD-TYPE 51 61 72 101 40 59
'SGK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0748 (Fisher's exact test), Q value = 0.18

Table S4133.  Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SGK3 MUTATED 7 0 0
SGK3 WILD-TYPE 210 75 99
'SGK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S4134.  Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SGK3 MUTATED 1 2 0
SGK3 WILD-TYPE 120 106 72
'SGK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S4135.  Gene #414: 'SGK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SGK3 MUTATED 3 0 0 0 0
SGK3 WILD-TYPE 85 66 45 55 47
'SMTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00294 (Fisher's exact test), Q value = 0.029

Table S4136.  Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SMTN MUTATED 3 13 4 0
SMTN WILD-TYPE 201 124 43 3

Figure S1779.  Get High-res Image Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SMTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.17

Table S4137.  Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SMTN MUTATED 3 9 2 2 1
SMTN WILD-TYPE 36 87 42 86 79
'SMTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4138.  Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SMTN MUTATED 1 5 4 5 3
SMTN WILD-TYPE 25 74 69 77 55
'SMTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 0.12

Table S4139.  Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SMTN MUTATED 3 7 4 4
SMTN WILD-TYPE 124 44 67 65

Figure S1780.  Get High-res Image Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SMTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.074

Table S4140.  Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SMTN MUTATED 1 4 10 1 3
SMTN WILD-TYPE 83 81 75 68 44

Figure S1781.  Get High-res Image Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SMTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.0075

Table S4141.  Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SMTN MUTATED 2 5 1 11
SMTN WILD-TYPE 93 69 120 69

Figure S1782.  Get High-res Image Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.057

Table S4142.  Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SMTN MUTATED 8 4 3 3 2 0
SMTN WILD-TYPE 44 60 69 101 38 59

Figure S1783.  Get High-res Image Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SMTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.14

Table S4143.  Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SMTN MUTATED 16 3 1
SMTN WILD-TYPE 201 72 98

Figure S1784.  Get High-res Image Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SMTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S4144.  Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SMTN MUTATED 8 2 5
SMTN WILD-TYPE 113 106 67
'SMTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0206 (Fisher's exact test), Q value = 0.086

Table S4145.  Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SMTN MUTATED 5 1 1 1 7
SMTN WILD-TYPE 83 65 44 54 40

Figure S1785.  Get High-res Image Gene #415: 'SMTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC9A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.18

Table S4146.  Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC9A11 MUTATED 7 14 3 0
SLC9A11 WILD-TYPE 197 123 44 3
'SLC9A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S4147.  Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC9A11 MUTATED 1 10 2 3 2
SLC9A11 WILD-TYPE 38 86 42 85 78
'SLC9A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S4148.  Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC9A11 MUTATED 3 7 4 3 6
SLC9A11 WILD-TYPE 23 72 69 79 52
'SLC9A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S4149.  Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC9A11 MUTATED 7 8 5 3
SLC9A11 WILD-TYPE 120 43 66 66
'SLC9A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.15

Table S4150.  Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC9A11 MUTATED 4 4 11 1 3
SLC9A11 WILD-TYPE 80 81 74 68 44
'SLC9A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S4151.  Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC9A11 MUTATED 5 5 4 9
SLC9A11 WILD-TYPE 90 69 117 71
'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00867 (Fisher's exact test), Q value = 0.052

Table S4152.  Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC9A11 MUTATED 3 11 4 4 0 2
SLC9A11 WILD-TYPE 49 53 68 100 40 57

Figure S1786.  Get High-res Image Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S4153.  Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC9A11 MUTATED 20 1 3
SLC9A11 WILD-TYPE 197 74 96

Figure S1787.  Get High-res Image Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.13

Table S4154.  Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC9A11 MUTATED 4 3 8
SLC9A11 WILD-TYPE 117 105 64

Figure S1788.  Get High-res Image Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC9A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00502 (Fisher's exact test), Q value = 0.039

Table S4155.  Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC9A11 MUTATED 1 2 6 1 5
SLC9A11 WILD-TYPE 87 64 39 54 42

Figure S1789.  Get High-res Image Gene #416: 'SLC9A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'JHDM1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.095

Table S4156.  Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
JHDM1D MUTATED 1 7 2 0
JHDM1D WILD-TYPE 203 130 45 3

Figure S1790.  Get High-res Image Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'JHDM1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00939 (Fisher's exact test), Q value = 0.055

Table S4157.  Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
JHDM1D MUTATED 1 6 0 0 0
JHDM1D WILD-TYPE 38 90 44 88 80

Figure S1791.  Get High-res Image Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'JHDM1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S4158.  Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
JHDM1D MUTATED 0 3 4 0 3
JHDM1D WILD-TYPE 26 76 69 82 55
'JHDM1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0077 (Fisher's exact test), Q value = 0.049

Table S4159.  Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
JHDM1D MUTATED 2 6 1 1
JHDM1D WILD-TYPE 125 45 70 68

Figure S1792.  Get High-res Image Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'JHDM1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.19

Table S4160.  Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
JHDM1D MUTATED 1 1 4 0 3
JHDM1D WILD-TYPE 83 84 81 69 44
'JHDM1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S4161.  Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
JHDM1D MUTATED 2 1 1 5
JHDM1D WILD-TYPE 93 73 120 75
'JHDM1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S4162.  Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
JHDM1D MUTATED 2 5 1 0 1 1
JHDM1D WILD-TYPE 50 59 71 104 39 58

Figure S1793.  Get High-res Image Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'JHDM1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S4163.  Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
JHDM1D MUTATED 8 0 2
JHDM1D WILD-TYPE 209 75 97
'JHDM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0771 (Fisher's exact test), Q value = 0.19

Table S4164.  Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
JHDM1D MUTATED 4 0 3
JHDM1D WILD-TYPE 117 108 69
'JHDM1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.15

Table S4165.  Gene #417: 'JHDM1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
JHDM1D MUTATED 1 0 1 1 4
JHDM1D WILD-TYPE 87 66 44 54 43
'GLT8D1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00398 (Fisher's exact test), Q value = 0.034

Table S4166.  Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GLT8D1 MUTATED 0 7 0 0
GLT8D1 WILD-TYPE 204 130 47 3

Figure S1794.  Get High-res Image Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLT8D1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 0.19

Table S4167.  Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GLT8D1 MUTATED 0 4 1 0 0
GLT8D1 WILD-TYPE 39 92 43 88 80
'GLT8D1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S4168.  Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GLT8D1 MUTATED 1 2 3 0 0
GLT8D1 WILD-TYPE 25 77 70 82 58
'GLT8D1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.076

Table S4169.  Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GLT8D1 MUTATED 1 4 1 0
GLT8D1 WILD-TYPE 126 47 70 69

Figure S1795.  Get High-res Image Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.13

Table S4170.  Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GLT8D1 MUTATED 0 0 4 1 2
GLT8D1 WILD-TYPE 84 85 81 68 45

Figure S1796.  Get High-res Image Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GLT8D1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S4171.  Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GLT8D1 MUTATED 2 2 0 3
GLT8D1 WILD-TYPE 93 72 121 77
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 0.12

Table S4172.  Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GLT8D1 MUTATED 1 4 2 0 0 0
GLT8D1 WILD-TYPE 51 60 70 104 40 59

Figure S1797.  Get High-res Image Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.18

Table S4173.  Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GLT8D1 MUTATED 7 0 0
GLT8D1 WILD-TYPE 210 75 99
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0867 (Fisher's exact test), Q value = 0.2

Table S4174.  Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GLT8D1 MUTATED 2 0 3
GLT8D1 WILD-TYPE 119 108 69
'GLT8D1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S4175.  Gene #418: 'GLT8D1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GLT8D1 MUTATED 1 0 2 0 2
GLT8D1 WILD-TYPE 87 66 43 55 45
'DAPK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 0.17

Table S4176.  Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DAPK1 MUTATED 6 13 2 0
DAPK1 WILD-TYPE 198 124 45 3
'DAPK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.013

Table S4177.  Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DAPK1 MUTATED 2 13 0 1 2
DAPK1 WILD-TYPE 37 83 44 87 78

Figure S1798.  Get High-res Image Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DAPK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S4178.  Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DAPK1 MUTATED 1 2 6 1 5
DAPK1 WILD-TYPE 25 77 67 81 53
'DAPK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00395 (Fisher's exact test), Q value = 0.034

Table S4179.  Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DAPK1 MUTATED 4 8 2 1
DAPK1 WILD-TYPE 123 43 69 68

Figure S1799.  Get High-res Image Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DAPK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00989 (Fisher's exact test), Q value = 0.056

Table S4180.  Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DAPK1 MUTATED 0 3 9 5 4
DAPK1 WILD-TYPE 84 82 76 64 43

Figure S1800.  Get High-res Image Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DAPK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S4181.  Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DAPK1 MUTATED 9 2 0 10
DAPK1 WILD-TYPE 86 72 121 70

Figure S1801.  Get High-res Image Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DAPK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.0078

Table S4182.  Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DAPK1 MUTATED 9 5 2 2 4 0
DAPK1 WILD-TYPE 43 59 70 102 36 59

Figure S1802.  Get High-res Image Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DAPK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.15

Table S4183.  Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DAPK1 MUTATED 18 2 2
DAPK1 WILD-TYPE 199 73 97
'DAPK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S4184.  Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DAPK1 MUTATED 8 4 2
DAPK1 WILD-TYPE 113 104 70
'DAPK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S4185.  Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DAPK1 MUTATED 6 1 1 0 6
DAPK1 WILD-TYPE 82 65 44 55 41

Figure S1803.  Get High-res Image Gene #419: 'DAPK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0973 (Fisher's exact test), Q value = 0.21

Table S4186.  Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EDNRB MUTATED 10 16 2 0
EDNRB WILD-TYPE 194 121 45 3
'EDNRB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S4187.  Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EDNRB MUTATED 0 15 0 3 1
EDNRB WILD-TYPE 39 81 44 85 79

Figure S1804.  Get High-res Image Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EDNRB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.14

Table S4188.  Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EDNRB MUTATED 5 6 8 2 6
EDNRB WILD-TYPE 21 73 65 80 52

Figure S1805.  Get High-res Image Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EDNRB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S4189.  Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EDNRB MUTATED 11 14 1 1
EDNRB WILD-TYPE 116 37 70 68

Figure S1806.  Get High-res Image Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.16

Table S4190.  Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EDNRB MUTATED 5 2 9 4 7
EDNRB WILD-TYPE 79 83 76 65 40
'EDNRB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.079

Table S4191.  Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EDNRB MUTATED 10 1 6 10
EDNRB WILD-TYPE 85 73 115 70

Figure S1807.  Get High-res Image Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 0.13

Table S4192.  Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EDNRB MUTATED 7 9 3 3 2 4
EDNRB WILD-TYPE 45 55 69 101 38 55

Figure S1808.  Get High-res Image Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0371 (Fisher's exact test), Q value = 0.12

Table S4193.  Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EDNRB MUTATED 21 1 6
EDNRB WILD-TYPE 196 74 93

Figure S1809.  Get High-res Image Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EDNRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.17

Table S4194.  Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EDNRB MUTATED 7 3 8
EDNRB WILD-TYPE 114 105 64
'EDNRB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.06

Table S4195.  Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EDNRB MUTATED 4 1 5 1 7
EDNRB WILD-TYPE 84 65 40 54 40

Figure S1810.  Get High-res Image Gene #420: 'EDNRB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C16ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00921 (Fisher's exact test), Q value = 0.054

Table S4196.  Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C16ORF70 MUTATED 0 6 0 0
C16ORF70 WILD-TYPE 204 131 47 3

Figure S1811.  Get High-res Image Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C16ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0689 (Fisher's exact test), Q value = 0.17

Table S4197.  Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C16ORF70 MUTATED 0 4 0 0 0
C16ORF70 WILD-TYPE 39 92 44 88 80
'C16ORF70 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.096 (Fisher's exact test), Q value = 0.21

Table S4198.  Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C16ORF70 MUTATED 0 4 1 0 0
C16ORF70 WILD-TYPE 26 75 72 82 58
'C16ORF70 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.086

Table S4199.  Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C16ORF70 MUTATED 0 2 3 0
C16ORF70 WILD-TYPE 127 49 68 69

Figure S1812.  Get High-res Image Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C16ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.8

Table S4200.  Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C16ORF70 MUTATED 0 1 2 1 1
C16ORF70 WILD-TYPE 84 84 83 68 46
'C16ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.36

Table S4201.  Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C16ORF70 MUTATED 3 1 0 1
C16ORF70 WILD-TYPE 92 73 121 79
'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S4202.  Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C16ORF70 MUTATED 1 3 1 1 0 0
C16ORF70 WILD-TYPE 51 61 71 103 40 59
'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S4203.  Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C16ORF70 MUTATED 6 0 0
C16ORF70 WILD-TYPE 211 75 99
'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.66

Table S4204.  Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C16ORF70 MUTATED 1 1 2
C16ORF70 WILD-TYPE 120 107 70
'C16ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.65

Table S4205.  Gene #421: 'C16ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C16ORF70 MUTATED 2 0 1 0 1
C16ORF70 WILD-TYPE 86 66 44 55 46
'SLC10A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S4206.  Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC10A6 MUTATED 1 5 1 0
SLC10A6 WILD-TYPE 203 132 46 3
'SLC10A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0921 (Fisher's exact test), Q value = 0.21

Table S4207.  Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC10A6 MUTATED 1 5 0 0 1
SLC10A6 WILD-TYPE 38 91 44 88 79
'SLC10A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S4208.  Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC10A6 MUTATED 1 1 2 0 2
SLC10A6 WILD-TYPE 25 78 71 82 56
'SLC10A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S4209.  Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC10A6 MUTATED 2 4 0 0
SLC10A6 WILD-TYPE 125 47 71 69

Figure S1813.  Get High-res Image Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC10A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.084

Table S4210.  Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC10A6 MUTATED 1 0 5 0 2
SLC10A6 WILD-TYPE 83 85 80 69 45

Figure S1814.  Get High-res Image Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC10A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 0.12

Table S4211.  Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC10A6 MUTATED 2 0 1 5
SLC10A6 WILD-TYPE 93 74 120 75

Figure S1815.  Get High-res Image Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0376 (Fisher's exact test), Q value = 0.12

Table S4212.  Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC10A6 MUTATED 4 1 2 0 0 1
SLC10A6 WILD-TYPE 48 63 70 104 40 58

Figure S1816.  Get High-res Image Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S4213.  Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC10A6 MUTATED 7 0 1
SLC10A6 WILD-TYPE 210 75 98
'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.11

Table S4214.  Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC10A6 MUTATED 6 0 1
SLC10A6 WILD-TYPE 115 108 71

Figure S1817.  Get High-res Image Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC10A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 0.14

Table S4215.  Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC10A6 MUTATED 2 0 0 1 4
SLC10A6 WILD-TYPE 86 66 45 54 43

Figure S1818.  Get High-res Image Gene #422: 'SLC10A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC80 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00999 (Fisher's exact test), Q value = 0.057

Table S4216.  Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCDC80 MUTATED 3 12 3 0
CCDC80 WILD-TYPE 201 125 44 3

Figure S1819.  Get High-res Image Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC80 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00228 (Fisher's exact test), Q value = 0.025

Table S4217.  Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCDC80 MUTATED 2 10 3 0 1
CCDC80 WILD-TYPE 37 86 41 88 79

Figure S1820.  Get High-res Image Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC80 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.55

Table S4218.  Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCDC80 MUTATED 1 4 4 1 4
CCDC80 WILD-TYPE 25 75 69 81 54
'CCDC80 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.074

Table S4219.  Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCDC80 MUTATED 3 7 2 2
CCDC80 WILD-TYPE 124 44 69 67

Figure S1821.  Get High-res Image Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC80 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00455 (Fisher's exact test), Q value = 0.036

Table S4220.  Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCDC80 MUTATED 0 3 10 2 3
CCDC80 WILD-TYPE 84 82 75 67 44

Figure S1822.  Get High-res Image Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC80 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00265 (Fisher's exact test), Q value = 0.027

Table S4221.  Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCDC80 MUTATED 4 3 1 10
CCDC80 WILD-TYPE 91 71 120 70

Figure S1823.  Get High-res Image Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC80 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00799 (Fisher's exact test), Q value = 0.05

Table S4222.  Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCDC80 MUTATED 7 6 2 3 1 0
CCDC80 WILD-TYPE 45 58 70 101 39 59

Figure S1824.  Get High-res Image Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC80 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 0.11

Table S4223.  Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCDC80 MUTATED 16 2 1
CCDC80 WILD-TYPE 201 73 98

Figure S1825.  Get High-res Image Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC80 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 0.12

Table S4224.  Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCDC80 MUTATED 6 1 6
CCDC80 WILD-TYPE 115 107 66

Figure S1826.  Get High-res Image Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CCDC80 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.068

Table S4225.  Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCDC80 MUTATED 3 1 3 0 6
CCDC80 WILD-TYPE 85 65 42 55 41

Figure S1827.  Get High-res Image Gene #423: 'CCDC80 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DNAJC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S4226.  Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DNAJC1 MUTATED 0 11 0 0
DNAJC1 WILD-TYPE 204 126 47 3

Figure S1828.  Get High-res Image Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAJC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 0.15

Table S4227.  Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DNAJC1 MUTATED 2 6 1 0 1
DNAJC1 WILD-TYPE 37 90 43 88 79
'DNAJC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.45

Table S4228.  Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DNAJC1 MUTATED 1 3 3 0 2
DNAJC1 WILD-TYPE 25 76 70 82 56
'DNAJC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0383 (Fisher's exact test), Q value = 0.12

Table S4229.  Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DNAJC1 MUTATED 2 4 3 0
DNAJC1 WILD-TYPE 125 47 68 69

Figure S1829.  Get High-res Image Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DNAJC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.18

Table S4230.  Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DNAJC1 MUTATED 0 3 6 1 1
DNAJC1 WILD-TYPE 84 82 79 68 46
'DNAJC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.06 (Fisher's exact test), Q value = 0.16

Table S4231.  Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DNAJC1 MUTATED 2 2 1 6
DNAJC1 WILD-TYPE 93 72 120 74
'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.094

Table S4232.  Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DNAJC1 MUTATED 3 5 0 3 0 0
DNAJC1 WILD-TYPE 49 59 72 101 40 59

Figure S1830.  Get High-res Image Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0858 (Fisher's exact test), Q value = 0.2

Table S4233.  Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DNAJC1 MUTATED 9 2 0
DNAJC1 WILD-TYPE 208 73 99
'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.62

Table S4234.  Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DNAJC1 MUTATED 3 3 4
DNAJC1 WILD-TYPE 118 105 68
'DNAJC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S4235.  Gene #424: 'DNAJC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DNAJC1 MUTATED 2 2 3 0 3
DNAJC1 WILD-TYPE 86 64 42 55 44
'CADPS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S4236.  Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CADPS2 MUTATED 2 6 1 0
CADPS2 WILD-TYPE 202 131 46 3
'CADPS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.4

Table S4237.  Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CADPS2 MUTATED 1 6 1 1 1
CADPS2 WILD-TYPE 38 90 43 87 79
'CADPS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.48

Table S4238.  Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CADPS2 MUTATED 1 3 2 0 1
CADPS2 WILD-TYPE 25 76 71 82 57
'CADPS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0443 (Fisher's exact test), Q value = 0.13

Table S4239.  Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CADPS2 MUTATED 2 4 1 0
CADPS2 WILD-TYPE 125 47 70 69

Figure S1831.  Get High-res Image Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CADPS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.11

Table S4240.  Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CADPS2 MUTATED 0 1 6 1 2
CADPS2 WILD-TYPE 84 84 79 68 45

Figure S1832.  Get High-res Image Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CADPS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00816 (Fisher's exact test), Q value = 0.05

Table S4241.  Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CADPS2 MUTATED 2 2 0 6
CADPS2 WILD-TYPE 93 72 121 74

Figure S1833.  Get High-res Image Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CADPS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S4242.  Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CADPS2 MUTATED 1 3 4 1 1 0
CADPS2 WILD-TYPE 51 61 68 103 39 59
'CADPS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.5

Table S4243.  Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CADPS2 MUTATED 8 1 1
CADPS2 WILD-TYPE 209 74 98
'CADPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.69

Table S4244.  Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CADPS2 MUTATED 5 2 3
CADPS2 WILD-TYPE 116 106 69
'CADPS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.16

Table S4245.  Gene #425: 'CADPS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CADPS2 MUTATED 2 2 1 0 5
CADPS2 WILD-TYPE 86 64 44 55 42
'ART5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S4246.  Gene #426: 'ART5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ART5 MUTATED 1 4 0 0
ART5 WILD-TYPE 203 133 47 3
'ART5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.17

Table S4247.  Gene #426: 'ART5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ART5 MUTATED 0 4 0 0 0
ART5 WILD-TYPE 39 92 44 88 80
'ART5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S4248.  Gene #426: 'ART5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ART5 MUTATED 0 3 1 0 1
ART5 WILD-TYPE 26 76 72 82 57
'ART5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S4249.  Gene #426: 'ART5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ART5 MUTATED 1 0 3 1
ART5 WILD-TYPE 126 51 68 68
'ART5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 0.99

Table S4250.  Gene #426: 'ART5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ART5 MUTATED 1 1 2 1 0
ART5 WILD-TYPE 83 84 83 68 47
'ART5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 0.84

Table S4251.  Gene #426: 'ART5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ART5 MUTATED 1 2 1 1
ART5 WILD-TYPE 94 72 120 79
'ART5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 0.84

Table S4252.  Gene #426: 'ART5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ART5 MUTATED 1 1 0 1 1 1
ART5 WILD-TYPE 51 63 72 103 39 58
'ART5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S4253.  Gene #426: 'ART5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ART5 MUTATED 3 0 2
ART5 WILD-TYPE 214 75 97
'ART5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4254.  Gene #426: 'ART5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ART5 MUTATED 2 1 1
ART5 WILD-TYPE 119 107 71
'ART5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S4255.  Gene #426: 'ART5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ART5 MUTATED 3 0 0 1 0
ART5 WILD-TYPE 85 66 45 54 47
'PLAGL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.62

Table S4256.  Gene #427: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLAGL2 MUTATED 2 3 1 0
PLAGL2 WILD-TYPE 202 134 46 3
'PLAGL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.66

Table S4257.  Gene #427: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLAGL2 MUTATED 0 4 0 2 1
PLAGL2 WILD-TYPE 39 92 44 86 79
'PLAGL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S4258.  Gene #427: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLAGL2 MUTATED 1 0 1 2 2
PLAGL2 WILD-TYPE 25 79 72 80 56
'PLAGL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S4259.  Gene #427: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLAGL2 MUTATED 2 3 0 1
PLAGL2 WILD-TYPE 125 48 71 68
'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S4260.  Gene #427: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLAGL2 MUTATED 1 1 4 0 1
PLAGL2 WILD-TYPE 83 84 81 69 46
'PLAGL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S4261.  Gene #427: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLAGL2 MUTATED 0 2 2 3
PLAGL2 WILD-TYPE 95 72 119 77
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S4262.  Gene #427: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLAGL2 MUTATED 1 2 1 3 0 0
PLAGL2 WILD-TYPE 51 62 71 101 40 59
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 0.92

Table S4263.  Gene #427: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLAGL2 MUTATED 5 1 1
PLAGL2 WILD-TYPE 212 74 98
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S4264.  Gene #427: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLAGL2 MUTATED 2 3 2
PLAGL2 WILD-TYPE 119 105 70
'PLAGL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.35

Table S4265.  Gene #427: 'PLAGL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLAGL2 MUTATED 0 2 2 1 2
PLAGL2 WILD-TYPE 88 64 43 54 45
'C16ORF63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.18

Table S4266.  Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C16ORF63 MUTATED 1 6 1 0
C16ORF63 WILD-TYPE 203 131 46 3
'C16ORF63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S4267.  Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C16ORF63 MUTATED 2 5 0 0 0
C16ORF63 WILD-TYPE 37 91 44 88 80

Figure S1834.  Get High-res Image Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C16ORF63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 0.62

Table S4268.  Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C16ORF63 MUTATED 0 3 1 1 3
C16ORF63 WILD-TYPE 26 76 72 81 55
'C16ORF63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.096

Table S4269.  Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C16ORF63 MUTATED 0 3 3 2
C16ORF63 WILD-TYPE 127 48 68 67

Figure S1835.  Get High-res Image Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C16ORF63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.058

Table S4270.  Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C16ORF63 MUTATED 1 0 6 0 1
C16ORF63 WILD-TYPE 83 85 79 69 46

Figure S1836.  Get High-res Image Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C16ORF63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.18

Table S4271.  Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C16ORF63 MUTATED 1 1 1 5
C16ORF63 WILD-TYPE 94 73 120 75
'C16ORF63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.57

Table S4272.  Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C16ORF63 MUTATED 1 3 2 1 1 0
C16ORF63 WILD-TYPE 51 61 70 103 39 59
'C16ORF63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S4273.  Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C16ORF63 MUTATED 6 2 0
C16ORF63 WILD-TYPE 211 73 99
'C16ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S4274.  Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C16ORF63 MUTATED 1 1 3
C16ORF63 WILD-TYPE 120 107 69
'C16ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.44

Table S4275.  Gene #428: 'C16ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C16ORF63 MUTATED 2 0 1 0 2
C16ORF63 WILD-TYPE 86 66 44 55 45
'GCDH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S4276.  Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GCDH MUTATED 1 5 1 0
GCDH WILD-TYPE 203 132 46 3
'GCDH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S4277.  Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GCDH MUTATED 1 4 0 0 1
GCDH WILD-TYPE 38 92 44 88 79
'GCDH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 0.87

Table S4278.  Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GCDH MUTATED 0 3 2 1 1
GCDH WILD-TYPE 26 76 71 81 57
'GCDH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.15

Table S4279.  Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GCDH MUTATED 1 4 1 1
GCDH WILD-TYPE 126 47 70 68
'GCDH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S4280.  Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GCDH MUTATED 0 0 7 0 0
GCDH WILD-TYPE 84 85 78 69 47

Figure S1837.  Get High-res Image Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GCDH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S4281.  Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GCDH MUTATED 1 1 1 4
GCDH WILD-TYPE 94 73 120 76
'GCDH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.56

Table S4282.  Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GCDH MUTATED 1 3 1 1 1 0
GCDH WILD-TYPE 51 61 71 103 39 59
'GCDH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S4283.  Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GCDH MUTATED 5 2 0
GCDH WILD-TYPE 212 73 99
'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 0.2

Table S4284.  Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GCDH MUTATED 2 0 3
GCDH WILD-TYPE 119 108 69
'GCDH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S4285.  Gene #429: 'GCDH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GCDH MUTATED 1 0 2 0 2
GCDH WILD-TYPE 87 66 43 55 45
'FBXO34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.061

Table S4286.  Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FBXO34 MUTATED 1 8 0 0
FBXO34 WILD-TYPE 203 129 47 3

Figure S1838.  Get High-res Image Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXO34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S4287.  Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FBXO34 MUTATED 0 5 2 0 2
FBXO34 WILD-TYPE 39 91 42 88 78
'FBXO34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 0.97

Table S4288.  Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FBXO34 MUTATED 0 2 2 1 1
FBXO34 WILD-TYPE 26 77 71 81 57
'FBXO34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S4289.  Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FBXO34 MUTATED 1 3 1 1
FBXO34 WILD-TYPE 126 48 70 68
'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.0096

Table S4290.  Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FBXO34 MUTATED 0 0 7 0 2
FBXO34 WILD-TYPE 84 85 78 69 45

Figure S1839.  Get High-res Image Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBXO34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0572 (Fisher's exact test), Q value = 0.16

Table S4291.  Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FBXO34 MUTATED 0 1 3 5
FBXO34 WILD-TYPE 95 73 118 75
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.16

Table S4292.  Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FBXO34 MUTATED 3 4 1 1 0 0
FBXO34 WILD-TYPE 49 60 71 103 40 59
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0978 (Fisher's exact test), Q value = 0.21

Table S4293.  Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FBXO34 MUTATED 8 1 0
FBXO34 WILD-TYPE 209 74 99
'FBXO34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.012

Table S4294.  Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FBXO34 MUTATED 2 0 7
FBXO34 WILD-TYPE 119 108 65

Figure S1840.  Get High-res Image Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FBXO34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00143 (Fisher's exact test), Q value = 0.019

Table S4295.  Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FBXO34 MUTATED 1 0 5 0 3
FBXO34 WILD-TYPE 87 66 40 55 44

Figure S1841.  Get High-res Image Gene #430: 'FBXO34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SERPINA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S4296.  Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SERPINA1 MUTATED 1 5 1 0
SERPINA1 WILD-TYPE 203 132 46 3
'SERPINA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.43

Table S4297.  Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SERPINA1 MUTATED 1 2 0 0 0
SERPINA1 WILD-TYPE 38 94 44 88 80
'SERPINA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 0.93

Table S4298.  Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SERPINA1 MUTATED 0 2 1 1 2
SERPINA1 WILD-TYPE 26 77 72 81 56
'SERPINA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.14

Table S4299.  Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SERPINA1 MUTATED 1 3 0 2
SERPINA1 WILD-TYPE 126 48 71 67

Figure S1842.  Get High-res Image Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SERPINA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.26

Table S4300.  Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SERPINA1 MUTATED 0 3 1 0 2
SERPINA1 WILD-TYPE 84 82 84 69 45
'SERPINA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S4301.  Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SERPINA1 MUTATED 2 1 0 3
SERPINA1 WILD-TYPE 93 73 121 77
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.43

Table S4302.  Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SERPINA1 MUTATED 1 3 0 2 1 0
SERPINA1 WILD-TYPE 51 61 72 102 39 59
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 0.83

Table S4303.  Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SERPINA1 MUTATED 4 2 1
SERPINA1 WILD-TYPE 213 73 98
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.71

Table S4304.  Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SERPINA1 MUTATED 1 2 0
SERPINA1 WILD-TYPE 120 106 72
'SERPINA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S4305.  Gene #431: 'SERPINA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SERPINA1 MUTATED 2 0 0 0 1
SERPINA1 WILD-TYPE 86 66 45 55 46
'KIAA1632 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.018

Table S4306.  Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1632 MUTATED 6 19 2 0
KIAA1632 WILD-TYPE 198 118 45 3

Figure S1843.  Get High-res Image Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1632 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00373 (Fisher's exact test), Q value = 0.033

Table S4307.  Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1632 MUTATED 3 14 1 2 2
KIAA1632 WILD-TYPE 36 82 43 86 78

Figure S1844.  Get High-res Image Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1632 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.37

Table S4308.  Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1632 MUTATED 1 5 8 2 5
KIAA1632 WILD-TYPE 25 74 65 80 53
'KIAA1632 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00385 (Fisher's exact test), Q value = 0.033

Table S4309.  Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1632 MUTATED 5 10 3 3
KIAA1632 WILD-TYPE 122 41 68 66

Figure S1845.  Get High-res Image Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1632 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.43

Table S4310.  Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1632 MUTATED 3 6 10 6 2
KIAA1632 WILD-TYPE 81 79 75 63 45
'KIAA1632 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0526 (Fisher's exact test), Q value = 0.15

Table S4311.  Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1632 MUTATED 10 6 3 8
KIAA1632 WILD-TYPE 85 68 118 72
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S4312.  Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1632 MUTATED 4 9 3 6 4 1
KIAA1632 WILD-TYPE 48 55 69 98 36 58
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S4313.  Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1632 MUTATED 18 5 4
KIAA1632 WILD-TYPE 199 70 95
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.18

Table S4314.  Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1632 MUTATED 12 3 6
KIAA1632 WILD-TYPE 109 105 66
'KIAA1632 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.081

Table S4315.  Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1632 MUTATED 9 2 4 0 6
KIAA1632 WILD-TYPE 79 64 41 55 41

Figure S1846.  Get High-res Image Gene #432: 'KIAA1632 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC138 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S4316.  Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCDC138 MUTATED 2 6 2 0
CCDC138 WILD-TYPE 202 131 45 3
'CCDC138 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 0.99

Table S4317.  Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCDC138 MUTATED 1 3 1 2 1
CCDC138 WILD-TYPE 38 93 43 86 79
'CCDC138 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.21

Table S4318.  Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCDC138 MUTATED 1 5 1 0 2
CCDC138 WILD-TYPE 25 74 72 82 56
'CCDC138 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00802 (Fisher's exact test), Q value = 0.05

Table S4319.  Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCDC138 MUTATED 1 3 5 0
CCDC138 WILD-TYPE 126 48 66 69

Figure S1847.  Get High-res Image Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC138 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S4320.  Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCDC138 MUTATED 1 1 6 1 1
CCDC138 WILD-TYPE 83 84 79 68 46
'CCDC138 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S4321.  Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCDC138 MUTATED 2 1 2 5
CCDC138 WILD-TYPE 93 73 119 75
'CCDC138 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S4322.  Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCDC138 MUTATED 2 4 1 1 1 1
CCDC138 WILD-TYPE 50 60 71 103 39 58
'CCDC138 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S4323.  Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCDC138 MUTATED 8 0 2
CCDC138 WILD-TYPE 209 75 97
'CCDC138 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S4324.  Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCDC138 MUTATED 2 1 4
CCDC138 WILD-TYPE 119 107 68
'CCDC138 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0815 (Fisher's exact test), Q value = 0.19

Table S4325.  Gene #433: 'CCDC138 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCDC138 MUTATED 2 0 3 0 2
CCDC138 WILD-TYPE 86 66 42 55 45
'ALDH3A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.14

Table S4326.  Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ALDH3A1 MUTATED 2 8 2 0
ALDH3A1 WILD-TYPE 202 129 45 3

Figure S1848.  Get High-res Image Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S4327.  Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ALDH3A1 MUTATED 1 5 1 0 1
ALDH3A1 WILD-TYPE 38 91 43 88 79
'ALDH3A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.12

Table S4328.  Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ALDH3A1 MUTATED 0 6 2 0 4
ALDH3A1 WILD-TYPE 26 73 71 82 54

Figure S1849.  Get High-res Image Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.076

Table S4329.  Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ALDH3A1 MUTATED 3 5 4 0
ALDH3A1 WILD-TYPE 124 46 67 69

Figure S1850.  Get High-res Image Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ALDH3A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00896 (Fisher's exact test), Q value = 0.053

Table S4330.  Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ALDH3A1 MUTATED 0 2 8 1 1
ALDH3A1 WILD-TYPE 84 83 77 68 46

Figure S1851.  Get High-res Image Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALDH3A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S4331.  Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ALDH3A1 MUTATED 3 1 1 7
ALDH3A1 WILD-TYPE 92 73 120 73

Figure S1852.  Get High-res Image Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S4332.  Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ALDH3A1 MUTATED 1 5 3 3 0 0
ALDH3A1 WILD-TYPE 51 59 69 101 40 59
'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S4333.  Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ALDH3A1 MUTATED 10 1 1
ALDH3A1 WILD-TYPE 207 74 98
'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.55

Table S4334.  Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ALDH3A1 MUTATED 3 1 3
ALDH3A1 WILD-TYPE 118 107 69
'ALDH3A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S4335.  Gene #434: 'ALDH3A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ALDH3A1 MUTATED 3 0 1 0 3
ALDH3A1 WILD-TYPE 85 66 44 55 44
'PAMR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.12

Table S4336.  Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PAMR1 MUTATED 3 10 2 0
PAMR1 WILD-TYPE 201 127 45 3

Figure S1853.  Get High-res Image Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAMR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.5

Table S4337.  Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PAMR1 MUTATED 0 5 1 1 1
PAMR1 WILD-TYPE 39 91 43 87 79
'PAMR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S4338.  Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PAMR1 MUTATED 0 5 7 1 2
PAMR1 WILD-TYPE 26 74 66 81 56
'PAMR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00385 (Fisher's exact test), Q value = 0.033

Table S4339.  Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PAMR1 MUTATED 4 8 2 1
PAMR1 WILD-TYPE 123 43 69 68

Figure S1854.  Get High-res Image Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.418 (Fisher's exact test), Q value = 0.54

Table S4340.  Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PAMR1 MUTATED 2 2 6 2 3
PAMR1 WILD-TYPE 82 83 79 67 44
'PAMR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 0.82

Table S4341.  Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PAMR1 MUTATED 3 3 4 5
PAMR1 WILD-TYPE 92 71 117 75
'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.1

Table S4342.  Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PAMR1 MUTATED 3 7 1 3 1 0
PAMR1 WILD-TYPE 49 57 71 101 39 59

Figure S1855.  Get High-res Image Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PAMR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0648 (Fisher's exact test), Q value = 0.17

Table S4343.  Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PAMR1 MUTATED 13 1 1
PAMR1 WILD-TYPE 204 74 98
'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4344.  Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PAMR1 MUTATED 3 2 2
PAMR1 WILD-TYPE 118 106 70
'PAMR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.68

Table S4345.  Gene #435: 'PAMR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PAMR1 MUTATED 3 1 2 0 1
PAMR1 WILD-TYPE 85 65 43 55 46
'ZNF776 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.002 (Fisher's exact test), Q value = 0.023

Table S4346.  Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF776 MUTATED 0 8 0 0
ZNF776 WILD-TYPE 204 129 47 3

Figure S1856.  Get High-res Image Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF776 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.37

Table S4347.  Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF776 MUTATED 0 4 1 0 1
ZNF776 WILD-TYPE 39 92 43 88 79
'ZNF776 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.946 (Fisher's exact test), Q value = 0.98

Table S4348.  Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF776 MUTATED 0 3 2 2 1
ZNF776 WILD-TYPE 26 76 71 80 57
'ZNF776 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 0.095

Table S4349.  Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF776 MUTATED 0 3 3 2
ZNF776 WILD-TYPE 127 48 68 67

Figure S1857.  Get High-res Image Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF776 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.16

Table S4350.  Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF776 MUTATED 0 1 5 1 0
ZNF776 WILD-TYPE 84 84 80 68 47
'ZNF776 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 0.78

Table S4351.  Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF776 MUTATED 2 2 1 2
ZNF776 WILD-TYPE 93 72 120 78
'ZNF776 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.71

Table S4352.  Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF776 MUTATED 1 3 1 2 1 0
ZNF776 WILD-TYPE 51 61 71 102 39 59
'ZNF776 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.13

Table S4353.  Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF776 MUTATED 4 4 0
ZNF776 WILD-TYPE 213 71 99

Figure S1858.  Get High-res Image Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF776 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.09

Table S4354.  Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF776 MUTATED 2 0 4
ZNF776 WILD-TYPE 119 108 68

Figure S1859.  Get High-res Image Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF776 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S4355.  Gene #436: 'ZNF776 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF776 MUTATED 2 1 2 0 1
ZNF776 WILD-TYPE 86 65 43 55 46
'SH2B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.017

Table S4356.  Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SH2B1 MUTATED 0 9 1 0
SH2B1 WILD-TYPE 204 128 46 3

Figure S1860.  Get High-res Image Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SH2B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.081

Table S4357.  Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SH2B1 MUTATED 0 7 1 0 1
SH2B1 WILD-TYPE 39 89 43 88 79

Figure S1861.  Get High-res Image Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SH2B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S4358.  Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SH2B1 MUTATED 0 5 3 0 1
SH2B1 WILD-TYPE 26 74 70 82 57
'SH2B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00169 (Fisher's exact test), Q value = 0.021

Table S4359.  Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SH2B1 MUTATED 0 5 3 1
SH2B1 WILD-TYPE 127 46 68 68

Figure S1862.  Get High-res Image Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SH2B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.013

Table S4360.  Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SH2B1 MUTATED 0 1 8 0 1
SH2B1 WILD-TYPE 84 84 77 69 46

Figure S1863.  Get High-res Image Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SH2B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.13

Table S4361.  Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SH2B1 MUTATED 2 1 1 6
SH2B1 WILD-TYPE 93 73 120 74

Figure S1864.  Get High-res Image Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SH2B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00296 (Fisher's exact test), Q value = 0.029

Table S4362.  Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SH2B1 MUTATED 4 5 1 0 1 0
SH2B1 WILD-TYPE 48 59 71 104 39 59

Figure S1865.  Get High-res Image Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SH2B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S4363.  Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SH2B1 MUTATED 8 1 2
SH2B1 WILD-TYPE 209 74 97
'SH2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.12

Table S4364.  Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SH2B1 MUTATED 4 0 4
SH2B1 WILD-TYPE 117 108 68

Figure S1866.  Get High-res Image Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SH2B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00515 (Fisher's exact test), Q value = 0.039

Table S4365.  Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SH2B1 MUTATED 1 0 3 0 4
SH2B1 WILD-TYPE 87 66 42 55 43

Figure S1867.  Get High-res Image Gene #437: 'SH2B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPR82 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S4366.  Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPR82 MUTATED 2 6 1 0
GPR82 WILD-TYPE 202 131 46 3
'GPR82 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 0.2

Table S4367.  Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPR82 MUTATED 1 6 1 1 0
GPR82 WILD-TYPE 38 90 43 87 80
'GPR82 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S4368.  Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPR82 MUTATED 0 2 3 0 3
GPR82 WILD-TYPE 26 77 70 82 55
'GPR82 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00353 (Fisher's exact test), Q value = 0.032

Table S4369.  Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPR82 MUTATED 1 5 2 0
GPR82 WILD-TYPE 126 46 69 69

Figure S1868.  Get High-res Image Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR82 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.071

Table S4370.  Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPR82 MUTATED 1 0 6 1 0
GPR82 WILD-TYPE 83 85 79 68 47

Figure S1869.  Get High-res Image Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPR82 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0389 (Fisher's exact test), Q value = 0.12

Table S4371.  Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPR82 MUTATED 2 0 1 5
GPR82 WILD-TYPE 93 74 120 75

Figure S1870.  Get High-res Image Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR82 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S4372.  Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPR82 MUTATED 4 1 2 1 0 1
GPR82 WILD-TYPE 48 63 70 103 40 58
'GPR82 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S4373.  Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPR82 MUTATED 7 1 1
GPR82 WILD-TYPE 210 74 98
'GPR82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.55

Table S4374.  Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPR82 MUTATED 3 1 3
GPR82 WILD-TYPE 118 107 69
'GPR82 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.71

Table S4375.  Gene #438: 'GPR82 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPR82 MUTATED 3 1 1 0 2
GPR82 WILD-TYPE 85 65 44 55 45
'ANK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S4376.  Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ANK3 MUTATED 11 33 3 0
ANK3 WILD-TYPE 193 104 44 3

Figure S1871.  Get High-res Image Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.083

Table S4377.  Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ANK3 MUTATED 5 18 5 5 4
ANK3 WILD-TYPE 34 78 39 83 76

Figure S1872.  Get High-res Image Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00234 (Fisher's exact test), Q value = 0.025

Table S4378.  Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ANK3 MUTATED 3 12 8 1 11
ANK3 WILD-TYPE 23 67 65 81 47

Figure S1873.  Get High-res Image Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ANK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.058

Table S4379.  Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ANK3 MUTATED 11 12 9 3
ANK3 WILD-TYPE 116 39 62 66

Figure S1874.  Get High-res Image Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00379 (Fisher's exact test), Q value = 0.033

Table S4380.  Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ANK3 MUTATED 7 5 21 9 4
ANK3 WILD-TYPE 77 80 64 60 43

Figure S1875.  Get High-res Image Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ANK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00803 (Fisher's exact test), Q value = 0.05

Table S4381.  Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ANK3 MUTATED 15 4 10 17
ANK3 WILD-TYPE 80 70 111 63

Figure S1876.  Get High-res Image Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S4382.  Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ANK3 MUTATED 11 17 8 2 4 5
ANK3 WILD-TYPE 41 47 64 102 36 54

Figure S1877.  Get High-res Image Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.076

Table S4383.  Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ANK3 MUTATED 34 3 10
ANK3 WILD-TYPE 183 72 89

Figure S1878.  Get High-res Image Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.14

Table S4384.  Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ANK3 MUTATED 18 6 10
ANK3 WILD-TYPE 103 102 62

Figure S1879.  Get High-res Image Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ANK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00439 (Fisher's exact test), Q value = 0.036

Table S4385.  Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ANK3 MUTATED 11 1 6 5 11
ANK3 WILD-TYPE 77 65 39 50 36

Figure S1880.  Get High-res Image Gene #439: 'ANK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.065

Table S4386.  Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MLH1 MUTATED 0 6 1 0
MLH1 WILD-TYPE 204 131 46 3

Figure S1881.  Get High-res Image Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S4387.  Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MLH1 MUTATED 2 1 1 0 2
MLH1 WILD-TYPE 37 95 43 88 78
'MLH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0303 (Fisher's exact test), Q value = 0.11

Table S4388.  Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MLH1 MUTATED 0 5 1 0 0
MLH1 WILD-TYPE 26 74 72 82 58

Figure S1882.  Get High-res Image Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MLH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.057

Table S4389.  Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MLH1 MUTATED 1 0 5 0
MLH1 WILD-TYPE 126 51 66 69

Figure S1883.  Get High-res Image Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S4390.  Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MLH1 MUTATED 0 1 4 2 1
MLH1 WILD-TYPE 84 84 81 67 46
'MLH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S4391.  Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MLH1 MUTATED 3 2 1 2
MLH1 WILD-TYPE 92 72 120 78
'MLH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00982 (Fisher's exact test), Q value = 0.056

Table S4392.  Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MLH1 MUTATED 1 5 2 0 0 0
MLH1 WILD-TYPE 51 59 70 104 40 59

Figure S1884.  Get High-res Image Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S4393.  Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MLH1 MUTATED 7 1 0
MLH1 WILD-TYPE 210 74 99
'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S4394.  Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MLH1 MUTATED 3 0 3
MLH1 WILD-TYPE 118 108 69
'MLH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0423 (Fisher's exact test), Q value = 0.13

Table S4395.  Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MLH1 MUTATED 1 0 2 0 3
MLH1 WILD-TYPE 87 66 43 55 44

Figure S1885.  Get High-res Image Gene #440: 'MLH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BCKDHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0233 (Fisher's exact test), Q value = 0.092

Table S4396.  Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BCKDHA MUTATED 1 5 3 0
BCKDHA WILD-TYPE 203 132 44 3

Figure S1886.  Get High-res Image Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BCKDHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S4397.  Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BCKDHA MUTATED 2 4 0 1 1
BCKDHA WILD-TYPE 37 92 44 87 79
'BCKDHA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S4398.  Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BCKDHA MUTATED 0 4 3 0 2
BCKDHA WILD-TYPE 26 75 70 82 56
'BCKDHA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.42

Table S4399.  Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BCKDHA MUTATED 2 3 3 1
BCKDHA WILD-TYPE 125 48 68 68
'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 0.2

Table S4400.  Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BCKDHA MUTATED 1 1 5 0 2
BCKDHA WILD-TYPE 83 84 80 69 45
'BCKDHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0456 (Fisher's exact test), Q value = 0.14

Table S4401.  Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BCKDHA MUTATED 2 3 0 4
BCKDHA WILD-TYPE 93 71 121 76

Figure S1887.  Get High-res Image Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S4402.  Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BCKDHA MUTATED 1 5 0 2 1 1
BCKDHA WILD-TYPE 51 59 72 102 39 58
'BCKDHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S4403.  Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BCKDHA MUTATED 7 0 3
BCKDHA WILD-TYPE 210 75 96
'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.65

Table S4404.  Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BCKDHA MUTATED 2 2 3
BCKDHA WILD-TYPE 119 106 69
'BCKDHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S4405.  Gene #441: 'BCKDHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BCKDHA MUTATED 1 0 2 2 2
BCKDHA WILD-TYPE 87 66 43 53 45
'MMP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00292 (Fisher's exact test), Q value = 0.029

Table S4406.  Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MMP10 MUTATED 0 8 1 0
MMP10 WILD-TYPE 204 129 46 3

Figure S1888.  Get High-res Image Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MMP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S4407.  Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MMP10 MUTATED 1 5 1 0 1
MMP10 WILD-TYPE 38 91 43 88 79
'MMP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.082

Table S4408.  Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MMP10 MUTATED 2 4 0 0 2
MMP10 WILD-TYPE 24 75 73 82 56

Figure S1889.  Get High-res Image Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MMP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S4409.  Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MMP10 MUTATED 2 2 4 0
MMP10 WILD-TYPE 125 49 67 69
'MMP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.68

Table S4410.  Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MMP10 MUTATED 1 1 4 1 1
MMP10 WILD-TYPE 83 84 81 68 46
'MMP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.13

Table S4411.  Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MMP10 MUTATED 2 0 1 5
MMP10 WILD-TYPE 93 74 120 75

Figure S1890.  Get High-res Image Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MMP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.7

Table S4412.  Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MMP10 MUTATED 3 2 1 2 0 1
MMP10 WILD-TYPE 49 62 71 102 40 58
'MMP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S4413.  Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MMP10 MUTATED 8 0 1
MMP10 WILD-TYPE 209 75 98
'MMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4414.  Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MMP10 MUTATED 3 2 2
MMP10 WILD-TYPE 118 106 70
'MMP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S4415.  Gene #442: 'MMP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MMP10 MUTATED 3 0 2 0 2
MMP10 WILD-TYPE 85 66 43 55 45
'HAX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 0.11

Table S4416.  Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HAX1 MUTATED 0 5 0 0
HAX1 WILD-TYPE 204 132 47 3

Figure S1891.  Get High-res Image Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HAX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.56

Table S4417.  Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HAX1 MUTATED 0 3 1 0 1
HAX1 WILD-TYPE 39 93 43 88 79
'HAX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.57

Table S4418.  Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HAX1 MUTATED 1 0 1 1 1
HAX1 WILD-TYPE 25 79 72 81 57
'HAX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 0.83

Table S4419.  Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HAX1 MUTATED 2 1 0 1
HAX1 WILD-TYPE 125 50 71 68
'HAX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.13

Table S4420.  Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HAX1 MUTATED 0 0 4 1 0
HAX1 WILD-TYPE 84 85 81 68 47

Figure S1892.  Get High-res Image Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HAX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 0.91

Table S4421.  Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HAX1 MUTATED 1 1 1 2
HAX1 WILD-TYPE 94 73 120 78
'HAX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.15

Table S4422.  Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HAX1 MUTATED 2 2 0 0 1 0
HAX1 WILD-TYPE 50 62 72 104 39 59
'HAX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S4423.  Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HAX1 MUTATED 4 1 0
HAX1 WILD-TYPE 213 74 99
'HAX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S4424.  Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HAX1 MUTATED 3 0 2
HAX1 WILD-TYPE 118 108 70
'HAX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S4425.  Gene #443: 'HAX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HAX1 MUTATED 3 0 1 0 1
HAX1 WILD-TYPE 85 66 44 55 46
'ULK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.55

Table S4426.  Gene #444: 'ULK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ULK2 MUTATED 4 6 1 0
ULK2 WILD-TYPE 200 131 46 3
'ULK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.4

Table S4427.  Gene #444: 'ULK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ULK2 MUTATED 1 6 1 1 1
ULK2 WILD-TYPE 38 90 43 87 79
'ULK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.67

Table S4428.  Gene #444: 'ULK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ULK2 MUTATED 0 4 3 1 1
ULK2 WILD-TYPE 26 75 70 81 57
'ULK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.15

Table S4429.  Gene #444: 'ULK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ULK2 MUTATED 2 3 4 0
ULK2 WILD-TYPE 125 48 67 69
'ULK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S4430.  Gene #444: 'ULK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ULK2 MUTATED 1 1 5 2 0
ULK2 WILD-TYPE 83 84 80 67 47
'ULK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.44

Table S4431.  Gene #444: 'ULK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ULK2 MUTATED 4 1 1 3
ULK2 WILD-TYPE 91 73 120 77
'ULK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 0.85

Table S4432.  Gene #444: 'ULK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ULK2 MUTATED 0 2 3 4 1 1
ULK2 WILD-TYPE 52 62 69 100 39 58
'ULK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 0.84

Table S4433.  Gene #444: 'ULK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ULK2 MUTATED 6 3 2
ULK2 WILD-TYPE 211 72 97
'ULK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 0.22

Table S4434.  Gene #444: 'ULK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ULK2 MUTATED 2 2 5
ULK2 WILD-TYPE 119 106 67
'ULK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 0.18

Table S4435.  Gene #444: 'ULK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ULK2 MUTATED 1 3 1 0 4
ULK2 WILD-TYPE 87 63 44 55 43
'C11ORF70 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.57

Table S4436.  Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C11ORF70 MUTATED 1 2 1 0
C11ORF70 WILD-TYPE 203 135 46 3
'C11ORF70 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S4437.  Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C11ORF70 MUTATED 0 3 1 0 0
C11ORF70 WILD-TYPE 39 93 43 88 80
'C11ORF70 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.77

Table S4438.  Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C11ORF70 MUTATED 0 2 1 0 1
C11ORF70 WILD-TYPE 26 77 72 82 57
'C11ORF70 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.064

Table S4439.  Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C11ORF70 MUTATED 0 3 1 0
C11ORF70 WILD-TYPE 127 48 70 69

Figure S1893.  Get High-res Image Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C11ORF70 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.073

Table S4440.  Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C11ORF70 MUTATED 0 0 4 0 0
C11ORF70 WILD-TYPE 84 85 81 69 47

Figure S1894.  Get High-res Image Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C11ORF70 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.092

Table S4441.  Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C11ORF70 MUTATED 0 1 0 3
C11ORF70 WILD-TYPE 95 73 121 77

Figure S1895.  Get High-res Image Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C11ORF70 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S4442.  Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C11ORF70 MUTATED 1 1 2 0 0 0
C11ORF70 WILD-TYPE 51 63 70 104 40 59
'C11ORF70 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.52

Table S4443.  Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C11ORF70 MUTATED 4 0 0
C11ORF70 WILD-TYPE 213 75 99
'C11ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S4444.  Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C11ORF70 MUTATED 1 0 2
C11ORF70 WILD-TYPE 120 108 70
'C11ORF70 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S4445.  Gene #445: 'C11ORF70 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C11ORF70 MUTATED 1 0 1 0 1
C11ORF70 WILD-TYPE 87 66 44 55 46
'AKAP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.12

Table S4446.  Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AKAP11 MUTATED 3 10 2 0
AKAP11 WILD-TYPE 201 127 45 3

Figure S1896.  Get High-res Image Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AKAP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.56

Table S4447.  Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AKAP11 MUTATED 1 6 1 2 1
AKAP11 WILD-TYPE 38 90 43 86 79
'AKAP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S4448.  Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AKAP11 MUTATED 1 5 6 1 1
AKAP11 WILD-TYPE 25 74 67 81 57
'AKAP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.16

Table S4449.  Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AKAP11 MUTATED 4 6 3 1
AKAP11 WILD-TYPE 123 45 68 68
'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.29

Table S4450.  Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AKAP11 MUTATED 1 3 5 1 4
AKAP11 WILD-TYPE 83 82 80 68 43
'AKAP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00423 (Fisher's exact test), Q value = 0.035

Table S4451.  Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AKAP11 MUTATED 2 1 2 9
AKAP11 WILD-TYPE 93 73 119 71

Figure S1897.  Get High-res Image Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S4452.  Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AKAP11 MUTATED 4 5 2 2 1 1
AKAP11 WILD-TYPE 48 59 70 102 39 58
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S4453.  Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AKAP11 MUTATED 12 1 2
AKAP11 WILD-TYPE 205 74 97
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S4454.  Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AKAP11 MUTATED 5 1 3
AKAP11 WILD-TYPE 116 107 69
'AKAP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S4455.  Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AKAP11 MUTATED 1 0 2 1 5
AKAP11 WILD-TYPE 87 66 43 54 42

Figure S1898.  Get High-res Image Gene #446: 'AKAP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAN1C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0311 (Fisher's exact test), Q value = 0.11

Table S4456.  Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAN1C1 MUTATED 1 7 1 0
MAN1C1 WILD-TYPE 203 130 46 3

Figure S1899.  Get High-res Image Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAN1C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00735 (Fisher's exact test), Q value = 0.048

Table S4457.  Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAN1C1 MUTATED 0 5 3 0 0
MAN1C1 WILD-TYPE 39 91 41 88 80

Figure S1900.  Get High-res Image Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAN1C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.77

Table S4458.  Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAN1C1 MUTATED 1 1 2 1 2
MAN1C1 WILD-TYPE 25 78 71 81 56
'MAN1C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0519 (Fisher's exact test), Q value = 0.15

Table S4459.  Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAN1C1 MUTATED 1 4 1 1
MAN1C1 WILD-TYPE 126 47 70 68
'MAN1C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S4460.  Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAN1C1 MUTATED 0 3 4 2 1
MAN1C1 WILD-TYPE 84 82 81 67 46
'MAN1C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.13

Table S4461.  Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAN1C1 MUTATED 2 1 1 6
MAN1C1 WILD-TYPE 93 73 120 74

Figure S1901.  Get High-res Image Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S4462.  Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAN1C1 MUTATED 3 4 1 2 0 0
MAN1C1 WILD-TYPE 49 60 71 102 40 59
'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0767 (Fisher's exact test), Q value = 0.19

Table S4463.  Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAN1C1 MUTATED 9 1 0
MAN1C1 WILD-TYPE 208 74 99
'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S4464.  Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAN1C1 MUTATED 3 1 4
MAN1C1 WILD-TYPE 118 107 68
'MAN1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 0.1

Table S4465.  Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAN1C1 MUTATED 2 0 2 0 4
MAN1C1 WILD-TYPE 86 66 43 55 43

Figure S1902.  Get High-res Image Gene #447: 'MAN1C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KCTD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.11

Table S4466.  Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCTD3 MUTATED 3 10 1 0
KCTD3 WILD-TYPE 201 127 46 3

Figure S1903.  Get High-res Image Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCTD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0388 (Fisher's exact test), Q value = 0.12

Table S4467.  Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCTD3 MUTATED 1 7 1 1 0
KCTD3 WILD-TYPE 38 89 43 87 80

Figure S1904.  Get High-res Image Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCTD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.51

Table S4468.  Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCTD3 MUTATED 0 2 2 3 5
KCTD3 WILD-TYPE 26 77 71 79 53
'KCTD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S4469.  Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCTD3 MUTATED 1 8 0 3
KCTD3 WILD-TYPE 126 43 71 66

Figure S1905.  Get High-res Image Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.78

Table S4470.  Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCTD3 MUTATED 1 3 4 3 1
KCTD3 WILD-TYPE 83 82 81 66 46
'KCTD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S4471.  Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCTD3 MUTATED 5 2 2 3
KCTD3 WILD-TYPE 90 72 119 77
'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.53

Table S4472.  Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCTD3 MUTATED 3 4 3 3 1 0
KCTD3 WILD-TYPE 49 60 69 101 39 59
'KCTD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 0.55

Table S4473.  Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCTD3 MUTATED 10 1 3
KCTD3 WILD-TYPE 207 74 96
'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 0.88

Table S4474.  Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCTD3 MUTATED 3 3 3
KCTD3 WILD-TYPE 118 105 69
'KCTD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 0.88

Table S4475.  Gene #448: 'KCTD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCTD3 MUTATED 3 1 2 1 2
KCTD3 WILD-TYPE 85 65 43 54 45
'RALGAPB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S4476.  Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RALGAPB MUTATED 3 11 3 0
RALGAPB WILD-TYPE 201 126 44 3

Figure S1906.  Get High-res Image Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RALGAPB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00625 (Fisher's exact test), Q value = 0.044

Table S4477.  Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RALGAPB MUTATED 4 7 1 1 0
RALGAPB WILD-TYPE 35 89 43 87 80

Figure S1907.  Get High-res Image Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RALGAPB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.19

Table S4478.  Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RALGAPB MUTATED 1 8 4 1 1
RALGAPB WILD-TYPE 25 71 69 81 57
'RALGAPB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S4479.  Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RALGAPB MUTATED 1 9 4 1
RALGAPB WILD-TYPE 126 42 67 68

Figure S1908.  Get High-res Image Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.983 (Fisher's exact test), Q value = 1

Table S4480.  Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RALGAPB MUTATED 3 4 4 2 2
RALGAPB WILD-TYPE 81 81 81 67 45
'RALGAPB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S4481.  Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RALGAPB MUTATED 3 3 2 7
RALGAPB WILD-TYPE 92 71 119 73
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S4482.  Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RALGAPB MUTATED 6 3 2 3 1 2
RALGAPB WILD-TYPE 46 61 70 101 39 57
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.53

Table S4483.  Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RALGAPB MUTATED 12 3 2
RALGAPB WILD-TYPE 205 72 97
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S4484.  Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RALGAPB MUTATED 5 2 3
RALGAPB WILD-TYPE 116 106 69
'RALGAPB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.809 (Fisher's exact test), Q value = 0.86

Table S4485.  Gene #449: 'RALGAPB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RALGAPB MUTATED 3 2 1 1 3
RALGAPB WILD-TYPE 85 64 44 54 44
'CRYGA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0521 (Fisher's exact test), Q value = 0.15

Table S4486.  Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CRYGA MUTATED 2 8 1 0
CRYGA WILD-TYPE 202 129 46 3
'CRYGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0653 (Fisher's exact test), Q value = 0.17

Table S4487.  Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CRYGA MUTATED 1 7 1 0 2
CRYGA WILD-TYPE 38 89 43 88 78
'CRYGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S4488.  Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CRYGA MUTATED 1 3 4 0 1
CRYGA WILD-TYPE 25 76 69 82 57
'CRYGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0137 (Fisher's exact test), Q value = 0.067

Table S4489.  Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CRYGA MUTATED 2 5 2 0
CRYGA WILD-TYPE 125 46 69 69

Figure S1909.  Get High-res Image Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CRYGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S4490.  Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CRYGA MUTATED 1 2 6 1 0
CRYGA WILD-TYPE 83 83 79 68 47
'CRYGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.53 (Fisher's exact test), Q value = 0.63

Table S4491.  Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CRYGA MUTATED 2 2 2 4
CRYGA WILD-TYPE 93 72 119 76
'CRYGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S4492.  Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CRYGA MUTATED 2 3 4 2 0 0
CRYGA WILD-TYPE 50 61 68 102 40 59
'CRYGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S4493.  Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CRYGA MUTATED 8 2 1
CRYGA WILD-TYPE 209 73 98
'CRYGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S4494.  Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CRYGA MUTATED 4 2 3
CRYGA WILD-TYPE 117 106 69
'CRYGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.48

Table S4495.  Gene #450: 'CRYGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CRYGA MUTATED 2 2 2 0 3
CRYGA WILD-TYPE 86 64 43 55 44
'CROT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00316 (Fisher's exact test), Q value = 0.03

Table S4496.  Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CROT MUTATED 2 12 1 0
CROT WILD-TYPE 202 125 46 3

Figure S1910.  Get High-res Image Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CROT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0412 (Fisher's exact test), Q value = 0.13

Table S4497.  Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CROT MUTATED 1 7 3 0 2
CROT WILD-TYPE 38 89 41 88 78

Figure S1911.  Get High-res Image Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CROT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S4498.  Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CROT MUTATED 1 5 4 0 4
CROT WILD-TYPE 25 74 69 82 54
'CROT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0041

Table S4499.  Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CROT MUTATED 3 9 2 0
CROT WILD-TYPE 124 42 69 69

Figure S1912.  Get High-res Image Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CROT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.011

Table S4500.  Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CROT MUTATED 0 1 10 2 1
CROT WILD-TYPE 84 84 75 67 46

Figure S1913.  Get High-res Image Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CROT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00985 (Fisher's exact test), Q value = 0.056

Table S4501.  Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CROT MUTATED 3 0 3 8
CROT WILD-TYPE 92 74 118 72

Figure S1914.  Get High-res Image Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CROT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00833 (Fisher's exact test), Q value = 0.051

Table S4502.  Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CROT MUTATED 5 4 5 1 0 0
CROT WILD-TYPE 47 60 67 103 40 59

Figure S1915.  Get High-res Image Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CROT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00937 (Fisher's exact test), Q value = 0.055

Table S4503.  Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CROT MUTATED 14 0 1
CROT WILD-TYPE 203 75 98

Figure S1916.  Get High-res Image Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.36

Table S4504.  Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CROT MUTATED 6 1 3
CROT WILD-TYPE 115 107 69
'CROT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00246 (Fisher's exact test), Q value = 0.026

Table S4505.  Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CROT MUTATED 1 0 2 1 6
CROT WILD-TYPE 87 66 43 54 41

Figure S1917.  Get High-res Image Gene #451: 'CROT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 0.014

Table S4506.  Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAP7D3 MUTATED 2 14 2 0
MAP7D3 WILD-TYPE 202 123 45 3

Figure S1918.  Get High-res Image Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP7D3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 0.68

Table S4507.  Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAP7D3 MUTATED 2 5 3 2 2
MAP7D3 WILD-TYPE 37 91 41 86 78
'MAP7D3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.12

Table S4508.  Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAP7D3 MUTATED 0 4 2 2 8
MAP7D3 WILD-TYPE 26 75 71 80 50

Figure S1919.  Get High-res Image Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MAP7D3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00074 (Fisher's exact test), Q value = 0.013

Table S4509.  Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAP7D3 MUTATED 1 8 4 3
MAP7D3 WILD-TYPE 126 43 67 66

Figure S1920.  Get High-res Image Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S4510.  Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAP7D3 MUTATED 2 7 6 1 2
MAP7D3 WILD-TYPE 82 78 79 68 45
'MAP7D3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00384 (Fisher's exact test), Q value = 0.033

Table S4511.  Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAP7D3 MUTATED 2 4 2 10
MAP7D3 WILD-TYPE 93 70 119 70

Figure S1921.  Get High-res Image Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 0.45

Table S4512.  Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAP7D3 MUTATED 2 7 3 3 1 2
MAP7D3 WILD-TYPE 50 57 69 101 39 57
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S4513.  Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAP7D3 MUTATED 14 2 2
MAP7D3 WILD-TYPE 203 73 97
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.63

Table S4514.  Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAP7D3 MUTATED 7 3 2
MAP7D3 WILD-TYPE 114 105 70
'MAP7D3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.621 (Fisher's exact test), Q value = 0.71

Table S4515.  Gene #452: 'MAP7D3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAP7D3 MUTATED 5 1 1 2 3
MAP7D3 WILD-TYPE 83 65 44 53 44
'ZFC3H1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.38

Table S4516.  Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZFC3H1 MUTATED 5 9 2 0
ZFC3H1 WILD-TYPE 199 128 45 3
'ZFC3H1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.1

Table S4517.  Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZFC3H1 MUTATED 2 8 0 1 1
ZFC3H1 WILD-TYPE 37 88 44 87 79

Figure S1922.  Get High-res Image Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZFC3H1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.46

Table S4518.  Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZFC3H1 MUTATED 1 1 3 4 5
ZFC3H1 WILD-TYPE 25 78 70 78 53
'ZFC3H1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00393 (Fisher's exact test), Q value = 0.034

Table S4519.  Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZFC3H1 MUTATED 5 7 0 2
ZFC3H1 WILD-TYPE 122 44 71 67

Figure S1923.  Get High-res Image Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.15

Table S4520.  Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZFC3H1 MUTATED 1 4 8 2 0
ZFC3H1 WILD-TYPE 83 81 77 67 47
'ZFC3H1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0427 (Fisher's exact test), Q value = 0.13

Table S4521.  Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZFC3H1 MUTATED 3 1 3 8
ZFC3H1 WILD-TYPE 92 73 118 72

Figure S1924.  Get High-res Image Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.41

Table S4522.  Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZFC3H1 MUTATED 4 5 3 2 1 1
ZFC3H1 WILD-TYPE 48 59 69 102 39 58
'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S4523.  Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZFC3H1 MUTATED 13 1 2
ZFC3H1 WILD-TYPE 204 74 97
'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.73

Table S4524.  Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZFC3H1 MUTATED 5 3 4
ZFC3H1 WILD-TYPE 116 105 68
'ZFC3H1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.068

Table S4525.  Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZFC3H1 MUTATED 2 0 2 2 6
ZFC3H1 WILD-TYPE 86 66 43 53 41

Figure S1925.  Get High-res Image Gene #453: 'ZFC3H1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NCOA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 0.19

Table S4526.  Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NCOA7 MUTATED 4 10 2 0
NCOA7 WILD-TYPE 200 127 45 3
'NCOA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.63

Table S4527.  Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NCOA7 MUTATED 1 6 1 3 1
NCOA7 WILD-TYPE 38 90 43 85 79
'NCOA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S4528.  Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NCOA7 MUTATED 1 6 2 1 3
NCOA7 WILD-TYPE 25 73 71 81 55
'NCOA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.088

Table S4529.  Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NCOA7 MUTATED 2 5 5 1
NCOA7 WILD-TYPE 125 46 66 68

Figure S1926.  Get High-res Image Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NCOA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.053 (Fisher's exact test), Q value = 0.15

Table S4530.  Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NCOA7 MUTATED 3 0 7 2 1
NCOA7 WILD-TYPE 81 85 78 67 46
'NCOA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.44

Table S4531.  Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NCOA7 MUTATED 6 2 2 3
NCOA7 WILD-TYPE 89 72 119 77
'NCOA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.13

Table S4532.  Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NCOA7 MUTATED 3 7 3 1 1 1
NCOA7 WILD-TYPE 49 57 69 103 39 58

Figure S1927.  Get High-res Image Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NCOA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.73

Table S4533.  Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NCOA7 MUTATED 11 2 3
NCOA7 WILD-TYPE 206 73 96
'NCOA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 0.11

Table S4534.  Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NCOA7 MUTATED 4 1 6
NCOA7 WILD-TYPE 117 107 66

Figure S1928.  Get High-res Image Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NCOA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.59

Table S4535.  Gene #454: 'NCOA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NCOA7 MUTATED 3 1 3 1 3
NCOA7 WILD-TYPE 85 65 42 54 44
'USP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0452 (Fisher's exact test), Q value = 0.13

Table S4536.  Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
USP13 MUTATED 2 7 3 0
USP13 WILD-TYPE 202 130 44 3

Figure S1929.  Get High-res Image Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'USP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.4 (Fisher's exact test), Q value = 0.52

Table S4537.  Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
USP13 MUTATED 0 4 2 1 1
USP13 WILD-TYPE 39 92 42 87 79
'USP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S4538.  Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
USP13 MUTATED 0 5 3 0 1
USP13 WILD-TYPE 26 74 70 82 57
'USP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.18

Table S4539.  Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
USP13 MUTATED 3 4 2 0
USP13 WILD-TYPE 124 47 69 69
'USP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.14

Table S4540.  Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
USP13 MUTATED 1 0 6 2 2
USP13 WILD-TYPE 83 85 79 67 45

Figure S1930.  Get High-res Image Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.13

Table S4541.  Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
USP13 MUTATED 3 0 2 6
USP13 WILD-TYPE 92 74 119 74

Figure S1931.  Get High-res Image Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.17

Table S4542.  Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
USP13 MUTATED 2 6 1 1 1 1
USP13 WILD-TYPE 50 58 71 103 39 58
'USP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0378 (Fisher's exact test), Q value = 0.12

Table S4543.  Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
USP13 MUTATED 11 0 1
USP13 WILD-TYPE 206 75 98

Figure S1932.  Get High-res Image Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'USP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 0.59

Table S4544.  Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
USP13 MUTATED 5 2 1
USP13 WILD-TYPE 116 106 71
'USP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.42

Table S4545.  Gene #455: 'USP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
USP13 MUTATED 3 0 1 1 3
USP13 WILD-TYPE 85 66 44 54 44
'ICAM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S4546.  Gene #456: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ICAM4 MUTATED 2 5 1 0
ICAM4 WILD-TYPE 202 132 46 3
'ICAM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.78

Table S4547.  Gene #456: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ICAM4 MUTATED 1 3 0 1 1
ICAM4 WILD-TYPE 38 93 44 87 79
'ICAM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.33

Table S4548.  Gene #456: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ICAM4 MUTATED 0 4 1 0 1
ICAM4 WILD-TYPE 26 75 72 82 57
'ICAM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S4549.  Gene #456: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ICAM4 MUTATED 1 2 3 0
ICAM4 WILD-TYPE 126 49 68 69
'ICAM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.63

Table S4550.  Gene #456: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ICAM4 MUTATED 0 2 3 1 1
ICAM4 WILD-TYPE 84 83 82 68 46
'ICAM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.556 (Fisher's exact test), Q value = 0.66

Table S4551.  Gene #456: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ICAM4 MUTATED 2 1 1 3
ICAM4 WILD-TYPE 93 73 120 77
'ICAM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S4552.  Gene #456: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ICAM4 MUTATED 1 4 1 1 1 0
ICAM4 WILD-TYPE 51 60 71 103 39 59
'ICAM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S4553.  Gene #456: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ICAM4 MUTATED 2 3 3
ICAM4 WILD-TYPE 215 72 96
'ICAM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.72

Table S4554.  Gene #456: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ICAM4 MUTATED 1 2 2
ICAM4 WILD-TYPE 120 106 70
'ICAM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4555.  Gene #456: 'ICAM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ICAM4 MUTATED 1 1 1 1 1
ICAM4 WILD-TYPE 87 65 44 54 46
'USP15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00393 (Fisher's exact test), Q value = 0.034

Table S4556.  Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
USP15 MUTATED 0 7 0 0
USP15 WILD-TYPE 204 130 47 3

Figure S1933.  Get High-res Image Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'USP15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 0.45

Table S4557.  Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
USP15 MUTATED 0 2 2 0 2
USP15 WILD-TYPE 39 94 42 88 78
'USP15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.11

Table S4558.  Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
USP15 MUTATED 1 5 1 0 0
USP15 WILD-TYPE 25 74 72 82 58

Figure S1934.  Get High-res Image Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'USP15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.073

Table S4559.  Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
USP15 MUTATED 1 4 2 0
USP15 WILD-TYPE 126 47 69 69

Figure S1935.  Get High-res Image Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'USP15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.11

Table S4560.  Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
USP15 MUTATED 0 1 5 0 1
USP15 WILD-TYPE 84 84 80 69 46

Figure S1936.  Get High-res Image Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S4561.  Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
USP15 MUTATED 0 1 2 4
USP15 WILD-TYPE 95 73 119 76
'USP15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.086

Table S4562.  Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
USP15 MUTATED 2 4 1 0 0 0
USP15 WILD-TYPE 50 60 71 104 40 59

Figure S1937.  Get High-res Image Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 0.92

Table S4563.  Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
USP15 MUTATED 5 1 1
USP15 WILD-TYPE 212 74 98
'USP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.16

Table S4564.  Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
USP15 MUTATED 1 0 3
USP15 WILD-TYPE 120 108 69
'USP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00387 (Fisher's exact test), Q value = 0.034

Table S4565.  Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
USP15 MUTATED 0 0 3 0 1
USP15 WILD-TYPE 88 66 42 55 46

Figure S1938.  Get High-res Image Gene #457: 'USP15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM113B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 0.058

Table S4566.  Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM113B MUTATED 3 11 0 0
FAM113B WILD-TYPE 201 126 47 3

Figure S1939.  Get High-res Image Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM113B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S4567.  Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM113B MUTATED 2 6 1 2 2
FAM113B WILD-TYPE 37 90 43 86 78
'FAM113B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.64

Table S4568.  Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM113B MUTATED 1 6 2 2 2
FAM113B WILD-TYPE 25 73 71 80 56
'FAM113B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.11

Table S4569.  Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM113B MUTATED 1 4 5 3
FAM113B WILD-TYPE 126 47 66 66

Figure S1940.  Get High-res Image Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM113B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.015

Table S4570.  Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM113B MUTATED 0 2 10 1 1
FAM113B WILD-TYPE 84 83 75 68 46

Figure S1941.  Get High-res Image Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM113B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.062

Table S4571.  Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM113B MUTATED 1 3 2 8
FAM113B WILD-TYPE 94 71 119 72

Figure S1942.  Get High-res Image Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM113B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S4572.  Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM113B MUTATED 2 6 2 3 2 0
FAM113B WILD-TYPE 50 58 70 101 38 59
'FAM113B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S4573.  Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM113B MUTATED 12 2 1
FAM113B WILD-TYPE 205 73 98
'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S4574.  Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM113B MUTATED 6 2 5
FAM113B WILD-TYPE 115 106 67
'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S4575.  Gene #458: 'FAM113B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM113B MUTATED 6 0 3 1 3
FAM113B WILD-TYPE 82 66 42 54 44
'PCCA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00828 (Fisher's exact test), Q value = 0.051

Table S4576.  Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PCCA MUTATED 2 10 0 0
PCCA WILD-TYPE 202 127 47 3

Figure S1943.  Get High-res Image Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCCA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0944 (Fisher's exact test), Q value = 0.21

Table S4577.  Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PCCA MUTATED 0 7 1 1 1
PCCA WILD-TYPE 39 89 43 87 79
'PCCA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S4578.  Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PCCA MUTATED 2 4 3 1 1
PCCA WILD-TYPE 24 75 70 81 57
'PCCA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0514 (Fisher's exact test), Q value = 0.15

Table S4579.  Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PCCA MUTATED 3 4 4 0
PCCA WILD-TYPE 124 47 67 69
'PCCA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S4580.  Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PCCA MUTATED 0 1 7 1 1
PCCA WILD-TYPE 84 84 78 68 46

Figure S1944.  Get High-res Image Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PCCA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.11

Table S4581.  Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PCCA MUTATED 4 0 1 5
PCCA WILD-TYPE 91 74 120 75

Figure S1945.  Get High-res Image Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PCCA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00076 (Fisher's exact test), Q value = 0.013

Table S4582.  Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PCCA MUTATED 3 7 2 0 0 0
PCCA WILD-TYPE 49 57 70 104 40 59

Figure S1946.  Get High-res Image Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCCA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.037 (Fisher's exact test), Q value = 0.12

Table S4583.  Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PCCA MUTATED 11 0 1
PCCA WILD-TYPE 206 75 98

Figure S1947.  Get High-res Image Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PCCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 0.17

Table S4584.  Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PCCA MUTATED 4 1 5
PCCA WILD-TYPE 117 107 67
'PCCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0496 (Fisher's exact test), Q value = 0.14

Table S4585.  Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PCCA MUTATED 2 0 4 1 3
PCCA WILD-TYPE 86 66 41 54 44

Figure S1948.  Get High-res Image Gene #459: 'PCCA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'P2RX1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.16

Table S4586.  Gene #460: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
P2RX1 MUTATED 0 4 0 0
P2RX1 WILD-TYPE 204 133 47 3
'P2RX1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S4587.  Gene #460: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
P2RX1 MUTATED 0 2 2 0 0
P2RX1 WILD-TYPE 39 94 42 88 80
'P2RX1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S4588.  Gene #460: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
P2RX1 MUTATED 0 2 0 0 1
P2RX1 WILD-TYPE 26 77 73 82 57
'P2RX1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0579 (Fisher's exact test), Q value = 0.16

Table S4589.  Gene #460: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
P2RX1 MUTATED 0 2 1 0
P2RX1 WILD-TYPE 127 49 70 69
'P2RX1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.44

Table S4590.  Gene #460: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
P2RX1 MUTATED 0 0 2 1 0
P2RX1 WILD-TYPE 84 85 83 68 47
'P2RX1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 0.65

Table S4591.  Gene #460: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
P2RX1 MUTATED 1 1 0 1
P2RX1 WILD-TYPE 94 73 121 79
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S4592.  Gene #460: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
P2RX1 MUTATED 1 1 1 1 0 0
P2RX1 WILD-TYPE 51 63 71 103 40 59
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.73

Table S4593.  Gene #460: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
P2RX1 MUTATED 3 1 0
P2RX1 WILD-TYPE 214 74 99
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S4594.  Gene #460: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
P2RX1 MUTATED 2 0 2
P2RX1 WILD-TYPE 119 108 70
'P2RX1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S4595.  Gene #460: 'P2RX1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
P2RX1 MUTATED 0 1 1 0 2
P2RX1 WILD-TYPE 88 65 44 55 45
'KIAA0649 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00215 (Fisher's exact test), Q value = 0.024

Table S4596.  Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA0649 MUTATED 3 14 1 0
KIAA0649 WILD-TYPE 201 123 46 3

Figure S1949.  Get High-res Image Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0649 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00715 (Fisher's exact test), Q value = 0.047

Table S4597.  Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA0649 MUTATED 0 11 2 1 2
KIAA0649 WILD-TYPE 39 85 42 87 78

Figure S1950.  Get High-res Image Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0649 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.972 (Fisher's exact test), Q value = 1

Table S4598.  Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA0649 MUTATED 1 5 4 4 2
KIAA0649 WILD-TYPE 25 74 69 78 56
'KIAA0649 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S4599.  Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA0649 MUTATED 4 6 3 3
KIAA0649 WILD-TYPE 123 45 68 66
'KIAA0649 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.065

Table S4600.  Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA0649 MUTATED 1 3 10 1 3
KIAA0649 WILD-TYPE 83 82 75 68 44

Figure S1951.  Get High-res Image Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA0649 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0466 (Fisher's exact test), Q value = 0.14

Table S4601.  Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA0649 MUTATED 4 2 3 9
KIAA0649 WILD-TYPE 91 72 118 71

Figure S1952.  Get High-res Image Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S4602.  Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA0649 MUTATED 4 6 1 5 1 1
KIAA0649 WILD-TYPE 48 58 71 99 39 58
'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 0.2

Table S4603.  Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA0649 MUTATED 14 3 1
KIAA0649 WILD-TYPE 203 72 98
'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S4604.  Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA0649 MUTATED 4 4 7
KIAA0649 WILD-TYPE 117 104 65
'KIAA0649 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.34

Table S4605.  Gene #461: 'KIAA0649 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA0649 MUTATED 5 1 4 1 4
KIAA0649 WILD-TYPE 83 65 41 54 43
'CD79A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00387 (Fisher's exact test), Q value = 0.034

Table S4606.  Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CD79A MUTATED 0 7 0 0
CD79A WILD-TYPE 204 130 47 3

Figure S1953.  Get High-res Image Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD79A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.48

Table S4607.  Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CD79A MUTATED 0 3 0 0 2
CD79A WILD-TYPE 39 93 44 88 78
'CD79A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S4608.  Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CD79A MUTATED 1 2 1 0 1
CD79A WILD-TYPE 25 77 72 82 57
'CD79A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.49

Table S4609.  Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CD79A MUTATED 2 2 1 0
CD79A WILD-TYPE 125 49 70 69
'CD79A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.06

Table S4610.  Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CD79A MUTATED 0 0 5 1 0
CD79A WILD-TYPE 84 85 80 68 47

Figure S1954.  Get High-res Image Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CD79A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 0.78

Table S4611.  Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CD79A MUTATED 2 0 2 2
CD79A WILD-TYPE 93 74 119 78
'CD79A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00646 (Fisher's exact test), Q value = 0.044

Table S4612.  Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CD79A MUTATED 1 5 1 0 0 0
CD79A WILD-TYPE 51 59 71 104 40 59

Figure S1955.  Get High-res Image Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CD79A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 0.92

Table S4613.  Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CD79A MUTATED 5 1 1
CD79A WILD-TYPE 212 74 98
'CD79A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0854 (Fisher's exact test), Q value = 0.2

Table S4614.  Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CD79A MUTATED 2 0 3
CD79A WILD-TYPE 119 108 69
'CD79A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.053 (Fisher's exact test), Q value = 0.15

Table S4615.  Gene #462: 'CD79A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CD79A MUTATED 1 0 3 0 1
CD79A WILD-TYPE 87 66 42 55 46
'C22ORF30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00992 (Fisher's exact test), Q value = 0.056

Table S4616.  Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C22ORF30 MUTATED 0 6 0 0
C22ORF30 WILD-TYPE 204 131 47 3

Figure S1956.  Get High-res Image Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C22ORF30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 0.56

Table S4617.  Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C22ORF30 MUTATED 0 3 1 0 1
C22ORF30 WILD-TYPE 39 93 43 88 79
'C22ORF30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.51

Table S4618.  Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C22ORF30 MUTATED 0 3 1 0 1
C22ORF30 WILD-TYPE 26 76 72 82 57
'C22ORF30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S4619.  Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C22ORF30 MUTATED 0 3 2 0
C22ORF30 WILD-TYPE 127 48 69 69

Figure S1957.  Get High-res Image Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C22ORF30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S4620.  Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C22ORF30 MUTATED 0 1 4 1 0
C22ORF30 WILD-TYPE 84 84 81 68 47
'C22ORF30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 0.86

Table S4621.  Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C22ORF30 MUTATED 2 1 1 2
C22ORF30 WILD-TYPE 93 73 120 78
'C22ORF30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.1

Table S4622.  Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C22ORF30 MUTATED 1 4 1 0 0 0
C22ORF30 WILD-TYPE 51 60 71 104 40 59

Figure S1958.  Get High-res Image Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C22ORF30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.52

Table S4623.  Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C22ORF30 MUTATED 5 1 0
C22ORF30 WILD-TYPE 212 74 99
'C22ORF30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.087 (Fisher's exact test), Q value = 0.2

Table S4624.  Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C22ORF30 MUTATED 2 0 3
C22ORF30 WILD-TYPE 119 108 69
'C22ORF30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0539 (Fisher's exact test), Q value = 0.15

Table S4625.  Gene #463: 'C22ORF30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C22ORF30 MUTATED 1 0 3 0 1
C22ORF30 WILD-TYPE 87 66 42 55 46
'SRP72 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0046

Table S4626.  Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SRP72 MUTATED 1 13 0 0
SRP72 WILD-TYPE 203 124 47 3

Figure S1959.  Get High-res Image Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SRP72 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.2

Table S4627.  Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SRP72 MUTATED 0 6 1 0 3
SRP72 WILD-TYPE 39 90 43 88 77
'SRP72 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S4628.  Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SRP72 MUTATED 1 2 2 4 2
SRP72 WILD-TYPE 25 77 71 78 56
'SRP72 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 0.82

Table S4629.  Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SRP72 MUTATED 4 1 4 2
SRP72 WILD-TYPE 123 50 67 67
'SRP72 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S4630.  Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SRP72 MUTATED 1 7 3 2 1
SRP72 WILD-TYPE 83 78 82 67 46
'SRP72 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S4631.  Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SRP72 MUTATED 4 5 0 5
SRP72 WILD-TYPE 91 69 121 75

Figure S1960.  Get High-res Image Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SRP72 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.885 (Fisher's exact test), Q value = 0.92

Table S4632.  Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SRP72 MUTATED 2 2 2 6 1 1
SRP72 WILD-TYPE 50 62 70 98 39 58
'SRP72 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.61

Table S4633.  Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SRP72 MUTATED 8 4 2
SRP72 WILD-TYPE 209 71 97
'SRP72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S4634.  Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SRP72 MUTATED 4 6 0
SRP72 WILD-TYPE 117 102 72
'SRP72 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S4635.  Gene #464: 'SRP72 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SRP72 MUTATED 5 4 0 0 1
SRP72 WILD-TYPE 83 62 45 55 46
'PLAG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00022 (Fisher's exact test), Q value = 0.0065

Table S4636.  Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLAG1 MUTATED 0 11 1 0
PLAG1 WILD-TYPE 204 126 46 3

Figure S1961.  Get High-res Image Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLAG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.75

Table S4637.  Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLAG1 MUTATED 0 4 1 1 2
PLAG1 WILD-TYPE 39 92 43 87 78
'PLAG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.613 (Fisher's exact test), Q value = 0.7

Table S4638.  Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLAG1 MUTATED 2 2 2 2 1
PLAG1 WILD-TYPE 24 77 71 80 57
'PLAG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.64

Table S4639.  Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLAG1 MUTATED 3 3 1 2
PLAG1 WILD-TYPE 124 48 70 67
'PLAG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 0.84

Table S4640.  Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLAG1 MUTATED 1 3 4 2 1
PLAG1 WILD-TYPE 83 82 81 67 46
'PLAG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S4641.  Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLAG1 MUTATED 3 2 3 3
PLAG1 WILD-TYPE 92 72 118 77
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.057

Table S4642.  Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLAG1 MUTATED 2 7 1 1 0 1
PLAG1 WILD-TYPE 50 57 71 103 40 58

Figure S1962.  Get High-res Image Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLAG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S4643.  Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLAG1 MUTATED 10 1 1
PLAG1 WILD-TYPE 207 74 98
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S4644.  Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLAG1 MUTATED 4 1 3
PLAG1 WILD-TYPE 117 107 69
'PLAG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0365 (Fisher's exact test), Q value = 0.12

Table S4645.  Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLAG1 MUTATED 0 1 3 1 3
PLAG1 WILD-TYPE 88 65 42 54 44

Figure S1963.  Get High-res Image Gene #465: 'PLAG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HSPA14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.57

Table S4646.  Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HSPA14 MUTATED 2 3 0 0
HSPA14 WILD-TYPE 202 134 47 3
'HSPA14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.73

Table S4647.  Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HSPA14 MUTATED 0 2 1 2 0
HSPA14 WILD-TYPE 39 94 43 86 80
'HSPA14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S4648.  Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HSPA14 MUTATED 0 3 0 0 1
HSPA14 WILD-TYPE 26 76 73 82 57
'HSPA14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0309 (Fisher's exact test), Q value = 0.11

Table S4649.  Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HSPA14 MUTATED 0 1 3 0
HSPA14 WILD-TYPE 127 50 68 69

Figure S1964.  Get High-res Image Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HSPA14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 0.99

Table S4650.  Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HSPA14 MUTATED 1 1 2 1 0
HSPA14 WILD-TYPE 83 84 83 68 47
'HSPA14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.778 (Fisher's exact test), Q value = 0.84

Table S4651.  Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HSPA14 MUTATED 1 2 1 1
HSPA14 WILD-TYPE 94 72 120 79
'HSPA14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.2

Table S4652.  Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HSPA14 MUTATED 1 3 0 0 1 1
HSPA14 WILD-TYPE 51 61 72 104 39 58
'HSPA14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.638 (Fisher's exact test), Q value = 0.72

Table S4653.  Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HSPA14 MUTATED 4 0 2
HSPA14 WILD-TYPE 213 75 97
'HSPA14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S4654.  Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HSPA14 MUTATED 3 0 2
HSPA14 WILD-TYPE 118 108 70
'HSPA14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0588 (Fisher's exact test), Q value = 0.16

Table S4655.  Gene #466: 'HSPA14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HSPA14 MUTATED 0 0 2 1 2
HSPA14 WILD-TYPE 88 66 43 54 45
'CYP7B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.37

Table S4656.  Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CYP7B1 MUTATED 10 10 0 0
CYP7B1 WILD-TYPE 194 127 47 3
'CYP7B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S4657.  Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CYP7B1 MUTATED 0 5 2 6 4
CYP7B1 WILD-TYPE 39 91 42 82 76
'CYP7B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.47

Table S4658.  Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CYP7B1 MUTATED 1 8 4 4 1
CYP7B1 WILD-TYPE 25 71 69 78 57
'CYP7B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S4659.  Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CYP7B1 MUTATED 6 2 8 2
CYP7B1 WILD-TYPE 121 49 63 67
'CYP7B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.84

Table S4660.  Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CYP7B1 MUTATED 5 3 6 2 2
CYP7B1 WILD-TYPE 79 82 79 67 45
'CYP7B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S4661.  Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CYP7B1 MUTATED 2 6 5 5
CYP7B1 WILD-TYPE 93 68 116 75
'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S4662.  Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CYP7B1 MUTATED 1 5 1 6 1 6
CYP7B1 WILD-TYPE 51 59 71 98 39 53
'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.12

Table S4663.  Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CYP7B1 MUTATED 6 7 7
CYP7B1 WILD-TYPE 211 68 92

Figure S1965.  Get High-res Image Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4664.  Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CYP7B1 MUTATED 7 6 4
CYP7B1 WILD-TYPE 114 102 68
'CYP7B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.57

Table S4665.  Gene #467: 'CYP7B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CYP7B1 MUTATED 4 4 1 6 2
CYP7B1 WILD-TYPE 84 62 44 49 45
'SLC7A10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S4666.  Gene #468: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC7A10 MUTATED 1 4 0 0
SLC7A10 WILD-TYPE 203 133 47 3
'SLC7A10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 0.83

Table S4667.  Gene #468: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC7A10 MUTATED 0 3 1 1 1
SLC7A10 WILD-TYPE 39 93 43 87 79
'SLC7A10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S4668.  Gene #468: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC7A10 MUTATED 1 2 1 0 1
SLC7A10 WILD-TYPE 25 77 72 82 57
'SLC7A10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.49

Table S4669.  Gene #468: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC7A10 MUTATED 2 2 1 0
SLC7A10 WILD-TYPE 125 49 70 69
'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.81

Table S4670.  Gene #468: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC7A10 MUTATED 1 1 3 1 0
SLC7A10 WILD-TYPE 83 84 82 68 47
'SLC7A10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.78

Table S4671.  Gene #468: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC7A10 MUTATED 2 0 2 2
SLC7A10 WILD-TYPE 93 74 119 78
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S4672.  Gene #468: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC7A10 MUTATED 3 1 1 1 0 0
SLC7A10 WILD-TYPE 49 63 71 103 40 59
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S4673.  Gene #468: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC7A10 MUTATED 6 0 0
SLC7A10 WILD-TYPE 211 75 99
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.68

Table S4674.  Gene #468: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC7A10 MUTATED 4 1 1
SLC7A10 WILD-TYPE 117 107 71
'SLC7A10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.41

Table S4675.  Gene #468: 'SLC7A10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC7A10 MUTATED 3 0 1 0 2
SLC7A10 WILD-TYPE 85 66 44 55 45
'FASTKD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00785 (Fisher's exact test), Q value = 0.049

Table S4676.  Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FASTKD1 MUTATED 1 9 2 0
FASTKD1 WILD-TYPE 203 128 45 3

Figure S1966.  Get High-res Image Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FASTKD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S4677.  Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FASTKD1 MUTATED 1 7 2 1 1
FASTKD1 WILD-TYPE 38 89 42 87 79
'FASTKD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.15

Table S4678.  Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FASTKD1 MUTATED 2 4 5 0 1
FASTKD1 WILD-TYPE 24 75 68 82 57
'FASTKD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S4679.  Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FASTKD1 MUTATED 4 5 2 1
FASTKD1 WILD-TYPE 123 46 69 68
'FASTKD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.57

Table S4680.  Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FASTKD1 MUTATED 1 2 4 2 3
FASTKD1 WILD-TYPE 83 83 81 67 44
'FASTKD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S4681.  Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FASTKD1 MUTATED 2 1 3 6
FASTKD1 WILD-TYPE 93 73 118 74
'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.15

Table S4682.  Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FASTKD1 MUTATED 4 2 3 0 2 1
FASTKD1 WILD-TYPE 48 62 69 104 38 58
'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S4683.  Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FASTKD1 MUTATED 10 0 2
FASTKD1 WILD-TYPE 207 75 97
'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.098

Table S4684.  Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FASTKD1 MUTATED 7 0 2
FASTKD1 WILD-TYPE 114 108 70

Figure S1967.  Get High-res Image Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FASTKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.01 (Fisher's exact test), Q value = 0.057

Table S4685.  Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FASTKD1 MUTATED 1 0 2 1 5
FASTKD1 WILD-TYPE 87 66 43 54 42

Figure S1968.  Get High-res Image Gene #469: 'FASTKD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NEUROD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S4686.  Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NEUROD6 MUTATED 1 3 2 0
NEUROD6 WILD-TYPE 203 134 45 3
'NEUROD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S4687.  Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NEUROD6 MUTATED 0 2 0 1 0
NEUROD6 WILD-TYPE 39 94 44 87 80
'NEUROD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.33

Table S4688.  Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NEUROD6 MUTATED 0 1 1 0 3
NEUROD6 WILD-TYPE 26 78 72 82 55
'NEUROD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0495 (Fisher's exact test), Q value = 0.14

Table S4689.  Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NEUROD6 MUTATED 2 3 0 0
NEUROD6 WILD-TYPE 125 48 71 69

Figure S1969.  Get High-res Image Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NEUROD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.44

Table S4690.  Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NEUROD6 MUTATED 1 1 0 1 2
NEUROD6 WILD-TYPE 83 84 85 68 45
'NEUROD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S4691.  Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NEUROD6 MUTATED 2 1 0 2
NEUROD6 WILD-TYPE 93 73 121 78
'NEUROD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.16

Table S4692.  Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NEUROD6 MUTATED 0 4 0 1 0 1
NEUROD6 WILD-TYPE 52 60 72 103 40 58
'NEUROD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 0.9

Table S4693.  Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NEUROD6 MUTATED 3 1 2
NEUROD6 WILD-TYPE 214 74 97
'NEUROD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4694.  Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NEUROD6 MUTATED 1 1 1
NEUROD6 WILD-TYPE 120 107 71
'NEUROD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S4695.  Gene #470: 'NEUROD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NEUROD6 MUTATED 0 1 1 1 0
NEUROD6 WILD-TYPE 88 65 44 54 47
'KRTAP10-9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.18

Table S4696.  Gene #471: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KRTAP10-9 MUTATED 1 6 1 0
KRTAP10-9 WILD-TYPE 203 131 46 3
'KRTAP10-9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.78

Table S4697.  Gene #471: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KRTAP10-9 MUTATED 1 3 0 1 1
KRTAP10-9 WILD-TYPE 38 93 44 87 79
'KRTAP10-9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.49

Table S4698.  Gene #471: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KRTAP10-9 MUTATED 1 3 2 0 2
KRTAP10-9 WILD-TYPE 25 76 71 82 56
'KRTAP10-9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.35

Table S4699.  Gene #471: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KRTAP10-9 MUTATED 3 3 2 0
KRTAP10-9 WILD-TYPE 124 48 69 69
'KRTAP10-9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S4700.  Gene #471: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KRTAP10-9 MUTATED 0 1 3 0 2
KRTAP10-9 WILD-TYPE 84 84 82 69 45
'KRTAP10-9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 0.58

Table S4701.  Gene #471: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KRTAP10-9 MUTATED 1 1 1 3
KRTAP10-9 WILD-TYPE 94 73 120 77
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0763 (Fisher's exact test), Q value = 0.18

Table S4702.  Gene #471: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KRTAP10-9 MUTATED 2 4 0 2 0 0
KRTAP10-9 WILD-TYPE 50 60 72 102 40 59
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S4703.  Gene #471: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KRTAP10-9 MUTATED 6 2 0
KRTAP10-9 WILD-TYPE 211 73 99
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.38

Table S4704.  Gene #471: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KRTAP10-9 MUTATED 1 2 3
KRTAP10-9 WILD-TYPE 120 106 69
'KRTAP10-9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S4705.  Gene #471: 'KRTAP10-9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KRTAP10-9 MUTATED 2 1 2 0 1
KRTAP10-9 WILD-TYPE 86 65 43 55 46
'RBMX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00151 (Fisher's exact test), Q value = 0.02

Table S4706.  Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RBMX MUTATED 0 9 1 0
RBMX WILD-TYPE 204 128 46 3

Figure S1970.  Get High-res Image Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RBMX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.13

Table S4707.  Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RBMX MUTATED 0 6 0 0 2
RBMX WILD-TYPE 39 90 44 88 78

Figure S1971.  Get High-res Image Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RBMX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.78

Table S4708.  Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RBMX MUTATED 0 3 3 1 1
RBMX WILD-TYPE 26 76 70 81 57
'RBMX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S4709.  Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RBMX MUTATED 2 3 2 1
RBMX WILD-TYPE 125 48 69 68
'RBMX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.41

Table S4710.  Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RBMX MUTATED 0 4 3 1 1
RBMX WILD-TYPE 84 81 82 68 46
'RBMX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S4711.  Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RBMX MUTATED 2 3 1 3
RBMX WILD-TYPE 93 71 120 77
'RBMX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.47

Table S4712.  Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RBMX MUTATED 3 3 1 2 1 0
RBMX WILD-TYPE 49 61 71 102 39 59
'RBMX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.681 (Fisher's exact test), Q value = 0.76

Table S4713.  Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RBMX MUTATED 5 3 2
RBMX WILD-TYPE 212 72 97
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.62

Table S4714.  Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RBMX MUTATED 1 3 2
RBMX WILD-TYPE 120 105 70
'RBMX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.88

Table S4715.  Gene #472: 'RBMX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RBMX MUTATED 2 2 1 0 1
RBMX WILD-TYPE 86 64 44 55 46
'C10ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.11

Table S4716.  Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C10ORF71 MUTATED 2 9 1 0
C10ORF71 WILD-TYPE 202 128 46 3

Figure S1972.  Get High-res Image Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C10ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S4717.  Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C10ORF71 MUTATED 0 6 1 1 1
C10ORF71 WILD-TYPE 39 90 43 87 79
'C10ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S4718.  Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C10ORF71 MUTATED 1 4 5 1 0
C10ORF71 WILD-TYPE 25 75 68 81 58
'C10ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.65

Table S4719.  Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C10ORF71 MUTATED 4 3 3 1
C10ORF71 WILD-TYPE 123 48 68 68
'C10ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S4720.  Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C10ORF71 MUTATED 0 2 4 0 3
C10ORF71 WILD-TYPE 84 83 81 69 44

Figure S1973.  Get High-res Image Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C10ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00543 (Fisher's exact test), Q value = 0.041

Table S4721.  Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C10ORF71 MUTATED 0 2 1 6
C10ORF71 WILD-TYPE 95 72 120 74

Figure S1974.  Get High-res Image Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C10ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00851 (Fisher's exact test), Q value = 0.052

Table S4722.  Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C10ORF71 MUTATED 3 6 0 3 0 0
C10ORF71 WILD-TYPE 49 58 72 101 40 59

Figure S1975.  Get High-res Image Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C10ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.44

Table S4723.  Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C10ORF71 MUTATED 9 2 1
C10ORF71 WILD-TYPE 208 73 98
'C10ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.14

Table S4724.  Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C10ORF71 MUTATED 1 3 5
C10ORF71 WILD-TYPE 120 105 67

Figure S1976.  Get High-res Image Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C10ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S4725.  Gene #473: 'C10ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C10ORF71 MUTATED 1 3 3 0 2
C10ORF71 WILD-TYPE 87 63 42 55 45
'MRE11A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S4726.  Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MRE11A MUTATED 1 5 1 0
MRE11A WILD-TYPE 203 132 46 3
'MRE11A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S4727.  Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MRE11A MUTATED 1 3 1 0 0
MRE11A WILD-TYPE 38 93 43 88 80
'MRE11A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S4728.  Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MRE11A MUTATED 0 2 4 0 1
MRE11A WILD-TYPE 26 77 69 82 57
'MRE11A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.063

Table S4729.  Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MRE11A MUTATED 1 4 0 2
MRE11A WILD-TYPE 126 47 71 67

Figure S1977.  Get High-res Image Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MRE11A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.75

Table S4730.  Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MRE11A MUTATED 0 2 2 1 1
MRE11A WILD-TYPE 84 83 83 68 46
'MRE11A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.36

Table S4731.  Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MRE11A MUTATED 2 2 0 2
MRE11A WILD-TYPE 93 72 121 78
'MRE11A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00598 (Fisher's exact test), Q value = 0.043

Table S4732.  Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MRE11A MUTATED 1 4 0 0 2 0
MRE11A WILD-TYPE 51 60 72 104 38 59

Figure S1978.  Get High-res Image Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MRE11A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S4733.  Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MRE11A MUTATED 6 0 1
MRE11A WILD-TYPE 211 75 98
'MRE11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S4734.  Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MRE11A MUTATED 3 0 2
MRE11A WILD-TYPE 118 108 70
'MRE11A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.52

Table S4735.  Gene #474: 'MRE11A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MRE11A MUTATED 3 0 1 0 1
MRE11A WILD-TYPE 85 66 44 55 46
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4736.  Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAP2K1 MUTATED 4 2 1 0
MAP2K1 WILD-TYPE 200 135 46 3
'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.55

Table S4737.  Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAP2K1 MUTATED 1 3 1 0 2
MAP2K1 WILD-TYPE 38 93 43 88 78
'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.53

Table S4738.  Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAP2K1 MUTATED 0 1 2 0 2
MAP2K1 WILD-TYPE 26 78 71 82 56
'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.59

Table S4739.  Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAP2K1 MUTATED 1 2 1 1
MAP2K1 WILD-TYPE 126 49 70 68
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.13

Table S4740.  Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAP2K1 MUTATED 1 0 2 0 3
MAP2K1 WILD-TYPE 83 85 83 69 44

Figure S1979.  Get High-res Image Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S4741.  Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAP2K1 MUTATED 1 0 2 3
MAP2K1 WILD-TYPE 94 74 119 77
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S4742.  Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAP2K1 MUTATED 2 3 0 1 1 0
MAP2K1 WILD-TYPE 50 61 72 103 39 59
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.42

Table S4743.  Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAP2K1 MUTATED 5 2 0
MAP2K1 WILD-TYPE 212 73 99
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S4744.  Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAP2K1 MUTATED 2 1 4
MAP2K1 WILD-TYPE 119 107 68
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S4745.  Gene #475: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAP2K1 MUTATED 3 0 3 0 1
MAP2K1 WILD-TYPE 85 66 42 55 46
'C1ORF177 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00466 (Fisher's exact test), Q value = 0.037

Table S4746.  Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C1ORF177 MUTATED 1 10 1 0
C1ORF177 WILD-TYPE 203 127 46 3

Figure S1980.  Get High-res Image Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C1ORF177 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.11

Table S4747.  Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C1ORF177 MUTATED 1 7 2 0 1
C1ORF177 WILD-TYPE 38 89 42 88 79

Figure S1981.  Get High-res Image Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C1ORF177 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 0.79

Table S4748.  Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C1ORF177 MUTATED 0 3 1 3 3
C1ORF177 WILD-TYPE 26 76 72 79 55
'C1ORF177 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0929 (Fisher's exact test), Q value = 0.21

Table S4749.  Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C1ORF177 MUTATED 1 3 2 4
C1ORF177 WILD-TYPE 126 48 69 65
'C1ORF177 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S4750.  Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C1ORF177 MUTATED 0 2 5 3 2
C1ORF177 WILD-TYPE 84 83 80 66 45
'C1ORF177 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.062

Table S4751.  Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C1ORF177 MUTATED 3 3 0 6
C1ORF177 WILD-TYPE 92 71 121 74

Figure S1982.  Get High-res Image Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.37

Table S4752.  Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C1ORF177 MUTATED 4 3 2 2 1 0
C1ORF177 WILD-TYPE 48 61 70 102 39 59
'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0667 (Fisher's exact test), Q value = 0.17

Table S4753.  Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C1ORF177 MUTATED 10 2 0
C1ORF177 WILD-TYPE 207 73 99
'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0335 (Fisher's exact test), Q value = 0.11

Table S4754.  Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C1ORF177 MUTATED 5 0 4
C1ORF177 WILD-TYPE 116 108 68

Figure S1983.  Get High-res Image Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C1ORF177 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0876 (Fisher's exact test), Q value = 0.2

Table S4755.  Gene #476: 'C1ORF177 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C1ORF177 MUTATED 4 0 2 0 3
C1ORF177 WILD-TYPE 84 66 43 55 44
'IGF2BP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.48

Table S4756.  Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IGF2BP3 MUTATED 2 4 0 0
IGF2BP3 WILD-TYPE 202 133 47 3
'IGF2BP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.13

Table S4757.  Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IGF2BP3 MUTATED 1 5 1 0 0
IGF2BP3 WILD-TYPE 38 91 43 88 80

Figure S1984.  Get High-res Image Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IGF2BP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4758.  Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IGF2BP3 MUTATED 0 1 1 1 1
IGF2BP3 WILD-TYPE 26 78 72 81 57
'IGF2BP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0933 (Fisher's exact test), Q value = 0.21

Table S4759.  Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IGF2BP3 MUTATED 0 2 1 1
IGF2BP3 WILD-TYPE 127 49 70 68
'IGF2BP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S4760.  Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IGF2BP3 MUTATED 0 0 5 2 0
IGF2BP3 WILD-TYPE 84 85 80 67 47

Figure S1985.  Get High-res Image Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IGF2BP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0557 (Fisher's exact test), Q value = 0.15

Table S4761.  Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IGF2BP3 MUTATED 2 1 0 4
IGF2BP3 WILD-TYPE 93 73 121 76
'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.19

Table S4762.  Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IGF2BP3 MUTATED 3 1 2 0 1 0
IGF2BP3 WILD-TYPE 49 63 70 104 39 59
'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S4763.  Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IGF2BP3 MUTATED 6 1 0
IGF2BP3 WILD-TYPE 211 74 99
'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 0.18

Table S4764.  Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IGF2BP3 MUTATED 4 0 3
IGF2BP3 WILD-TYPE 117 108 69
'IGF2BP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S4765.  Gene #477: 'IGF2BP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IGF2BP3 MUTATED 3 0 1 0 3
IGF2BP3 WILD-TYPE 85 66 44 55 44
'AKAP13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S4766.  Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AKAP13 MUTATED 13 17 2 0
AKAP13 WILD-TYPE 191 120 45 3
'AKAP13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00856 (Fisher's exact test), Q value = 0.052

Table S4767.  Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AKAP13 MUTATED 1 14 2 6 1
AKAP13 WILD-TYPE 38 82 42 82 79

Figure S1986.  Get High-res Image Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AKAP13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S4768.  Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AKAP13 MUTATED 1 9 11 3 5
AKAP13 WILD-TYPE 25 70 62 79 53
'AKAP13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.011

Table S4769.  Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AKAP13 MUTATED 8 13 6 2
AKAP13 WILD-TYPE 119 38 65 67

Figure S1987.  Get High-res Image Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00041 (Fisher's exact test), Q value = 0.0092

Table S4770.  Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AKAP13 MUTATED 4 2 15 2 7
AKAP13 WILD-TYPE 80 83 70 67 40

Figure S1988.  Get High-res Image Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AKAP13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.15

Table S4771.  Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AKAP13 MUTATED 7 2 9 12
AKAP13 WILD-TYPE 88 72 112 68
'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0041

Table S4772.  Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AKAP13 MUTATED 8 11 8 1 0 4
AKAP13 WILD-TYPE 44 53 64 103 40 55

Figure S1989.  Get High-res Image Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00982 (Fisher's exact test), Q value = 0.056

Table S4773.  Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AKAP13 MUTATED 25 1 6
AKAP13 WILD-TYPE 192 74 93

Figure S1990.  Get High-res Image Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0025 (Fisher's exact test), Q value = 0.026

Table S4774.  Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AKAP13 MUTATED 12 1 8
AKAP13 WILD-TYPE 109 107 64

Figure S1991.  Get High-res Image Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'AKAP13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.097

Table S4775.  Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AKAP13 MUTATED 6 1 4 2 8
AKAP13 WILD-TYPE 82 65 41 53 39

Figure S1992.  Get High-res Image Gene #478: 'AKAP13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ABCE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.093

Table S4776.  Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABCE1 MUTATED 1 7 2 0
ABCE1 WILD-TYPE 203 130 45 3

Figure S1993.  Get High-res Image Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S4777.  Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABCE1 MUTATED 1 2 3 1 0
ABCE1 WILD-TYPE 38 94 41 87 80
'ABCE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S4778.  Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABCE1 MUTATED 0 5 2 1 1
ABCE1 WILD-TYPE 26 74 71 81 57
'ABCE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0563 (Fisher's exact test), Q value = 0.15

Table S4779.  Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABCE1 MUTATED 1 3 4 1
ABCE1 WILD-TYPE 126 48 67 68
'ABCE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.895 (Fisher's exact test), Q value = 0.93

Table S4780.  Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABCE1 MUTATED 1 3 3 2 1
ABCE1 WILD-TYPE 83 82 82 67 46
'ABCE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.297 (Fisher's exact test), Q value = 0.43

Table S4781.  Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABCE1 MUTATED 3 2 1 4
ABCE1 WILD-TYPE 92 72 120 76
'ABCE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 0.95

Table S4782.  Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABCE1 MUTATED 1 3 2 2 1 1
ABCE1 WILD-TYPE 51 61 70 102 39 58
'ABCE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.5

Table S4783.  Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABCE1 MUTATED 8 1 1
ABCE1 WILD-TYPE 209 74 98
'ABCE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S4784.  Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABCE1 MUTATED 4 1 1
ABCE1 WILD-TYPE 117 107 71
'ABCE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S4785.  Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABCE1 MUTATED 1 0 1 0 4
ABCE1 WILD-TYPE 87 66 44 55 43

Figure S1994.  Get High-res Image Gene #479: 'ABCE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KLHL14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00275 (Fisher's exact test), Q value = 0.028

Table S4786.  Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KLHL14 MUTATED 3 14 2 0
KLHL14 WILD-TYPE 201 123 45 3

Figure S1995.  Get High-res Image Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KLHL14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.13

Table S4787.  Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KLHL14 MUTATED 1 10 2 2 1
KLHL14 WILD-TYPE 38 86 42 86 79

Figure S1996.  Get High-res Image Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KLHL14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.068

Table S4788.  Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KLHL14 MUTATED 0 5 6 0 6
KLHL14 WILD-TYPE 26 74 67 82 52

Figure S1997.  Get High-res Image Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KLHL14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.18

Table S4789.  Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KLHL14 MUTATED 5 7 3 2
KLHL14 WILD-TYPE 122 44 68 67
'KLHL14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0446 (Fisher's exact test), Q value = 0.13

Table S4790.  Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KLHL14 MUTATED 2 5 7 0 4
KLHL14 WILD-TYPE 82 80 78 69 43

Figure S1998.  Get High-res Image Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KLHL14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S4791.  Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KLHL14 MUTATED 3 4 3 8
KLHL14 WILD-TYPE 92 70 118 72
'KLHL14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S4792.  Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KLHL14 MUTATED 3 8 2 3 1 2
KLHL14 WILD-TYPE 49 56 70 101 39 57
'KLHL14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.49

Table S4793.  Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KLHL14 MUTATED 14 2 3
KLHL14 WILD-TYPE 203 73 96
'KLHL14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.4

Table S4794.  Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KLHL14 MUTATED 7 3 6
KLHL14 WILD-TYPE 114 105 66
'KLHL14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.7 (Fisher's exact test), Q value = 0.77

Table S4795.  Gene #480: 'KLHL14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KLHL14 MUTATED 5 2 3 2 4
KLHL14 WILD-TYPE 83 64 42 53 43
'H2AFY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S4796.  Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
H2AFY MUTATED 1 5 1 0
H2AFY WILD-TYPE 203 132 46 3
'H2AFY MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0789 (Fisher's exact test), Q value = 0.19

Table S4797.  Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
H2AFY MUTATED 1 3 2 0 0
H2AFY WILD-TYPE 38 93 42 88 80
'H2AFY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.53

Table S4798.  Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
H2AFY MUTATED 0 2 3 0 1
H2AFY WILD-TYPE 26 77 70 82 57
'H2AFY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S4799.  Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
H2AFY MUTATED 0 6 0 0
H2AFY WILD-TYPE 127 45 71 69

Figure S1999.  Get High-res Image Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'H2AFY MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.33

Table S4800.  Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
H2AFY MUTATED 0 2 4 1 0
H2AFY WILD-TYPE 84 83 81 68 47
'H2AFY MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S4801.  Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
H2AFY MUTATED 2 2 0 3
H2AFY WILD-TYPE 93 72 121 77
'H2AFY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S4802.  Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
H2AFY MUTATED 0 4 1 1 1 0
H2AFY WILD-TYPE 52 60 71 103 39 59
'H2AFY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S4803.  Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
H2AFY MUTATED 6 1 0
H2AFY WILD-TYPE 211 74 99
'H2AFY MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S4804.  Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
H2AFY MUTATED 3 1 2
H2AFY WILD-TYPE 118 107 70
'H2AFY MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S4805.  Gene #481: 'H2AFY MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
H2AFY MUTATED 1 1 2 0 2
H2AFY WILD-TYPE 87 65 43 55 45
'USP35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S4806.  Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
USP35 MUTATED 3 4 1 0
USP35 WILD-TYPE 201 133 46 3
'USP35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00432 (Fisher's exact test), Q value = 0.035

Table S4807.  Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
USP35 MUTATED 0 7 1 0 0
USP35 WILD-TYPE 39 89 43 88 80

Figure S2000.  Get High-res Image Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S4808.  Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
USP35 MUTATED 0 1 4 0 2
USP35 WILD-TYPE 26 78 69 82 56
'USP35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0046

Table S4809.  Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
USP35 MUTATED 1 6 0 0
USP35 WILD-TYPE 126 45 71 69

Figure S2001.  Get High-res Image Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'USP35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S4810.  Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
USP35 MUTATED 1 1 5 0 1
USP35 WILD-TYPE 83 84 80 69 46
'USP35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.48

Table S4811.  Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
USP35 MUTATED 1 1 2 4
USP35 WILD-TYPE 94 73 119 76
'USP35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.59

Table S4812.  Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
USP35 MUTATED 2 3 1 1 0 1
USP35 WILD-TYPE 50 61 71 103 40 58
'USP35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4813.  Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
USP35 MUTATED 5 1 2
USP35 WILD-TYPE 212 74 97
'USP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4814.  Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
USP35 MUTATED 3 2 2
USP35 WILD-TYPE 118 106 70
'USP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 0.95

Table S4815.  Gene #482: 'USP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
USP35 MUTATED 2 1 2 1 1
USP35 WILD-TYPE 86 65 43 54 46
'ZFP36L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.1

Table S4816.  Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZFP36L1 MUTATED 0 5 0 0
ZFP36L1 WILD-TYPE 204 132 47 3

Figure S2002.  Get High-res Image Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZFP36L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.4

Table S4817.  Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZFP36L1 MUTATED 0 2 2 0 1
ZFP36L1 WILD-TYPE 39 94 42 88 79
'ZFP36L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S4818.  Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZFP36L1 MUTATED 0 2 2 0 0
ZFP36L1 WILD-TYPE 26 77 71 82 58
'ZFP36L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S4819.  Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZFP36L1 MUTATED 1 1 2 0
ZFP36L1 WILD-TYPE 126 50 69 69
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.71

Table S4820.  Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZFP36L1 MUTATED 0 2 2 1 0
ZFP36L1 WILD-TYPE 84 83 83 68 47
'ZFP36L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0967 (Fisher's exact test), Q value = 0.21

Table S4821.  Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZFP36L1 MUTATED 1 1 0 3
ZFP36L1 WILD-TYPE 94 73 121 77
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 0.99

Table S4822.  Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZFP36L1 MUTATED 1 1 1 2 0 0
ZFP36L1 WILD-TYPE 51 63 71 102 40 59
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.6

Table S4823.  Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZFP36L1 MUTATED 4 1 0
ZFP36L1 WILD-TYPE 213 74 99
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4824.  Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZFP36L1 MUTATED 2 2 1
ZFP36L1 WILD-TYPE 119 106 71
'ZFP36L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S4825.  Gene #483: 'ZFP36L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZFP36L1 MUTATED 1 1 1 0 2
ZFP36L1 WILD-TYPE 87 65 44 55 45
'RASAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.0096

Table S4826.  Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RASAL2 MUTATED 3 15 0 0
RASAL2 WILD-TYPE 201 122 47 3

Figure S2003.  Get High-res Image Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RASAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.086

Table S4827.  Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RASAL2 MUTATED 1 7 4 0 2
RASAL2 WILD-TYPE 38 89 40 88 78

Figure S2004.  Get High-res Image Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RASAL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.6

Table S4828.  Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RASAL2 MUTATED 0 6 4 4 1
RASAL2 WILD-TYPE 26 73 69 78 57
'RASAL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.68

Table S4829.  Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RASAL2 MUTATED 4 3 5 3
RASAL2 WILD-TYPE 123 48 66 66
'RASAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.015

Table S4830.  Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RASAL2 MUTATED 1 3 11 0 2
RASAL2 WILD-TYPE 83 82 74 69 45

Figure S2005.  Get High-res Image Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RASAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.08

Table S4831.  Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RASAL2 MUTATED 4 2 2 9
RASAL2 WILD-TYPE 91 72 119 71

Figure S2006.  Get High-res Image Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RASAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.5

Table S4832.  Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RASAL2 MUTATED 4 6 3 4 1 1
RASAL2 WILD-TYPE 48 58 69 100 39 58
'RASAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0839 (Fisher's exact test), Q value = 0.2

Table S4833.  Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RASAL2 MUTATED 13 5 1
RASAL2 WILD-TYPE 204 70 98
'RASAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.074

Table S4834.  Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RASAL2 MUTATED 5 1 7
RASAL2 WILD-TYPE 116 107 65

Figure S2007.  Get High-res Image Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RASAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S4835.  Gene #484: 'RASAL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RASAL2 MUTATED 5 1 3 0 4
RASAL2 WILD-TYPE 83 65 42 55 43
'GTF3C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S4836.  Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GTF3C1 MUTATED 4 28 3 0
GTF3C1 WILD-TYPE 200 109 44 3

Figure S2008.  Get High-res Image Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GTF3C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.022

Table S4837.  Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GTF3C1 MUTATED 2 17 4 3 2
GTF3C1 WILD-TYPE 37 79 40 85 78

Figure S2009.  Get High-res Image Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GTF3C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.087

Table S4838.  Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GTF3C1 MUTATED 1 10 8 2 10
GTF3C1 WILD-TYPE 25 69 65 80 48

Figure S2010.  Get High-res Image Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GTF3C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S4839.  Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GTF3C1 MUTATED 5 14 6 6
GTF3C1 WILD-TYPE 122 37 65 63

Figure S2011.  Get High-res Image Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GTF3C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S4840.  Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GTF3C1 MUTATED 1 6 19 4 4
GTF3C1 WILD-TYPE 83 79 66 65 43

Figure S2012.  Get High-res Image Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GTF3C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00125 (Fisher's exact test), Q value = 0.018

Table S4841.  Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GTF3C1 MUTATED 7 7 4 16
GTF3C1 WILD-TYPE 88 67 117 64

Figure S2013.  Get High-res Image Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 0.017

Table S4842.  Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GTF3C1 MUTATED 6 14 7 4 3 1
GTF3C1 WILD-TYPE 46 50 65 100 37 58

Figure S2014.  Get High-res Image Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 0.029

Table S4843.  Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GTF3C1 MUTATED 29 3 3
GTF3C1 WILD-TYPE 188 72 96

Figure S2015.  Get High-res Image Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S4844.  Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GTF3C1 MUTATED 13 3 10
GTF3C1 WILD-TYPE 108 105 62

Figure S2016.  Get High-res Image Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GTF3C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0052

Table S4845.  Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GTF3C1 MUTATED 10 1 5 0 10
GTF3C1 WILD-TYPE 78 65 40 55 37

Figure S2017.  Get High-res Image Gene #485: 'GTF3C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RPS20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.49

Table S4846.  Gene #486: 'RPS20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RPS20 MUTATED 1 3 0 0
RPS20 WILD-TYPE 203 134 47 3
'RPS20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.686 (Fisher's exact test), Q value = 0.76

Table S4847.  Gene #486: 'RPS20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RPS20 MUTATED 0 1 1 0 1
RPS20 WILD-TYPE 39 95 43 88 79
'RPS20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.63

Table S4848.  Gene #486: 'RPS20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RPS20 MUTATED 0 0 1 1 2
RPS20 WILD-TYPE 26 79 72 81 56
'RPS20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S4849.  Gene #486: 'RPS20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RPS20 MUTATED 1 1 2 0
RPS20 WILD-TYPE 126 50 69 69
'RPS20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S4850.  Gene #486: 'RPS20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RPS20 MUTATED 0 2 1 1 0
RPS20 WILD-TYPE 84 83 84 68 47
'RPS20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.63

Table S4851.  Gene #486: 'RPS20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RPS20 MUTATED 1 2 1 0
RPS20 WILD-TYPE 94 72 120 80
'RPS20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 0.97

Table S4852.  Gene #486: 'RPS20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RPS20 MUTATED 0 1 1 2 0 0
RPS20 WILD-TYPE 52 63 71 102 40 59
'RPS20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S4853.  Gene #486: 'RPS20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RPS20 MUTATED 4 0 0
RPS20 WILD-TYPE 213 75 99
'KIAA0748 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S4854.  Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA0748 MUTATED 5 9 1 0
KIAA0748 WILD-TYPE 199 128 46 3
'KIAA0748 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.1

Table S4855.  Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA0748 MUTATED 0 9 3 1 2
KIAA0748 WILD-TYPE 39 87 41 87 78

Figure S2018.  Get High-res Image Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0748 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.64

Table S4856.  Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA0748 MUTATED 2 5 2 2 2
KIAA0748 WILD-TYPE 24 74 71 80 56
'KIAA0748 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S4857.  Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA0748 MUTATED 5 4 4 0
KIAA0748 WILD-TYPE 122 47 67 69
'KIAA0748 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S4858.  Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA0748 MUTATED 1 4 4 5 2
KIAA0748 WILD-TYPE 83 81 81 64 45
'KIAA0748 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S4859.  Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA0748 MUTATED 6 2 2 6
KIAA0748 WILD-TYPE 89 72 119 74
'KIAA0748 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S4860.  Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA0748 MUTATED 4 3 4 1 2 2
KIAA0748 WILD-TYPE 48 61 68 103 38 57
'KIAA0748 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S4861.  Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA0748 MUTATED 13 1 2
KIAA0748 WILD-TYPE 204 74 97
'KIAA0748 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.53

Table S4862.  Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA0748 MUTATED 6 3 5
KIAA0748 WILD-TYPE 115 105 67
'KIAA0748 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00302 (Fisher's exact test), Q value = 0.029

Table S4863.  Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA0748 MUTATED 0 2 4 2 6
KIAA0748 WILD-TYPE 88 64 41 53 41

Figure S2019.  Get High-res Image Gene #487: 'KIAA0748 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'USP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.11

Table S4864.  Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
USP1 MUTATED 0 5 0 0
USP1 WILD-TYPE 204 132 47 3

Figure S2020.  Get High-res Image Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'USP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 0.21

Table S4865.  Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
USP1 MUTATED 1 2 2 0 0
USP1 WILD-TYPE 38 94 42 88 80
'USP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.78

Table S4866.  Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
USP1 MUTATED 0 2 1 0 1
USP1 WILD-TYPE 26 77 72 82 57
'USP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0467 (Fisher's exact test), Q value = 0.14

Table S4867.  Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
USP1 MUTATED 0 2 2 0
USP1 WILD-TYPE 127 49 69 69

Figure S2021.  Get High-res Image Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'USP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S4868.  Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
USP1 MUTATED 0 0 4 0 0
USP1 WILD-TYPE 84 85 81 69 47

Figure S2022.  Get High-res Image Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00377 (Fisher's exact test), Q value = 0.033

Table S4869.  Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
USP1 MUTATED 0 0 0 4
USP1 WILD-TYPE 95 74 121 76

Figure S2023.  Get High-res Image Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'USP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0915 (Fisher's exact test), Q value = 0.21

Table S4870.  Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
USP1 MUTATED 3 1 0 1 0 0
USP1 WILD-TYPE 49 63 72 103 40 59
'USP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S4871.  Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
USP1 MUTATED 4 1 0
USP1 WILD-TYPE 213 74 99
'USP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S4872.  Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
USP1 MUTATED 2 1 2
USP1 WILD-TYPE 119 107 70
'USP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.38

Table S4873.  Gene #488: 'USP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
USP1 MUTATED 4 1 0 0 0
USP1 WILD-TYPE 84 65 45 55 47
'BRMS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S4874.  Gene #489: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BRMS1 MUTATED 1 5 0 0
BRMS1 WILD-TYPE 203 132 47 3
'BRMS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S4875.  Gene #489: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BRMS1 MUTATED 0 3 1 1 0
BRMS1 WILD-TYPE 39 93 43 87 80
'BRMS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 0.89

Table S4876.  Gene #489: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BRMS1 MUTATED 0 0 1 1 1
BRMS1 WILD-TYPE 26 79 72 81 57
'BRMS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S4877.  Gene #489: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BRMS1 MUTATED 0 1 1 1
BRMS1 WILD-TYPE 127 50 70 68
'BRMS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.81

Table S4878.  Gene #489: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BRMS1 MUTATED 1 1 3 1 0
BRMS1 WILD-TYPE 83 84 82 68 47
'BRMS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S4879.  Gene #489: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BRMS1 MUTATED 2 1 0 3
BRMS1 WILD-TYPE 93 73 121 77
'BRMS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 0.94

Table S4880.  Gene #489: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BRMS1 MUTATED 1 2 1 1 0 1
BRMS1 WILD-TYPE 51 62 71 103 40 58
'BRMS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4881.  Gene #489: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BRMS1 MUTATED 4 1 1
BRMS1 WILD-TYPE 213 74 98
'BRMS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S4882.  Gene #489: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BRMS1 MUTATED 2 1 2
BRMS1 WILD-TYPE 119 107 70
'BRMS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.428 (Fisher's exact test), Q value = 0.55

Table S4883.  Gene #489: 'BRMS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BRMS1 MUTATED 1 0 1 1 2
BRMS1 WILD-TYPE 87 66 44 54 45
'RNASEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.091

Table S4884.  Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RNASEL MUTATED 0 4 2 0
RNASEL WILD-TYPE 204 133 45 3

Figure S2024.  Get High-res Image Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNASEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S4885.  Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RNASEL MUTATED 1 3 1 0 0
RNASEL WILD-TYPE 38 93 43 88 80
'RNASEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.57

Table S4886.  Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RNASEL MUTATED 0 2 1 0 2
RNASEL WILD-TYPE 26 77 72 82 56
'RNASEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0647 (Fisher's exact test), Q value = 0.17

Table S4887.  Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RNASEL MUTATED 1 3 1 0
RNASEL WILD-TYPE 126 48 70 69
'RNASEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S4888.  Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RNASEL MUTATED 0 1 3 0 1
RNASEL WILD-TYPE 84 84 82 69 46
'RNASEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.64

Table S4889.  Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RNASEL MUTATED 2 0 1 2
RNASEL WILD-TYPE 93 74 120 78
'RNASEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S4890.  Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RNASEL MUTATED 2 2 1 0 1 0
RNASEL WILD-TYPE 50 62 71 104 39 59
'RNASEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.65

Table S4891.  Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RNASEL MUTATED 5 0 1
RNASEL WILD-TYPE 212 75 98
'RNASEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S4892.  Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RNASEL MUTATED 2 1 2
RNASEL WILD-TYPE 119 107 70
'RNASEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S4893.  Gene #490: 'RNASEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RNASEL MUTATED 2 0 1 0 2
RNASEL WILD-TYPE 86 66 44 55 45
'TIMP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.51

Table S4894.  Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TIMP3 MUTATED 3 5 1 0
TIMP3 WILD-TYPE 201 132 46 3
'TIMP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S4895.  Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TIMP3 MUTATED 1 5 1 1 0
TIMP3 WILD-TYPE 38 91 43 87 80
'TIMP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0721 (Fisher's exact test), Q value = 0.18

Table S4896.  Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TIMP3 MUTATED 0 3 4 0 0
TIMP3 WILD-TYPE 26 76 69 82 58
'TIMP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0183 (Fisher's exact test), Q value = 0.08

Table S4897.  Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TIMP3 MUTATED 3 4 0 0
TIMP3 WILD-TYPE 124 47 71 69

Figure S2025.  Get High-res Image Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TIMP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.48

Table S4898.  Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TIMP3 MUTATED 2 0 4 2 1
TIMP3 WILD-TYPE 82 85 81 67 46
'TIMP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.53

Table S4899.  Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TIMP3 MUTATED 2 0 4 3
TIMP3 WILD-TYPE 93 74 117 77
'TIMP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S4900.  Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TIMP3 MUTATED 4 0 3 0 0 2
TIMP3 WILD-TYPE 48 64 69 104 40 57

Figure S2026.  Get High-res Image Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TIMP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S4901.  Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TIMP3 MUTATED 7 0 2
TIMP3 WILD-TYPE 210 75 97
'TIMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.43

Table S4902.  Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TIMP3 MUTATED 4 1 0
TIMP3 WILD-TYPE 117 107 72
'TIMP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.51

Table S4903.  Gene #491: 'TIMP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TIMP3 MUTATED 2 0 0 1 2
TIMP3 WILD-TYPE 86 66 45 54 45
'RELT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S4904.  Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RELT MUTATED 1 6 0 0
RELT WILD-TYPE 203 131 47 3
'RELT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.064

Table S4905.  Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RELT MUTATED 0 6 1 0 0
RELT WILD-TYPE 39 90 43 88 80

Figure S2027.  Get High-res Image Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RELT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.64

Table S4906.  Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RELT MUTATED 0 1 3 1 0
RELT WILD-TYPE 26 78 70 81 58
'RELT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.058 (Fisher's exact test), Q value = 0.16

Table S4907.  Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RELT MUTATED 1 3 0 1
RELT WILD-TYPE 126 48 71 68
'RELT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.14

Table S4908.  Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RELT MUTATED 0 1 4 0 2
RELT WILD-TYPE 84 84 81 69 45
'RELT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00219 (Fisher's exact test), Q value = 0.024

Table S4909.  Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RELT MUTATED 0 2 0 5
RELT WILD-TYPE 95 72 121 75

Figure S2028.  Get High-res Image Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RELT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.097

Table S4910.  Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RELT MUTATED 4 1 0 1 1 0
RELT WILD-TYPE 48 63 72 103 39 59

Figure S2029.  Get High-res Image Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RELT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.42

Table S4911.  Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RELT MUTATED 5 2 0
RELT WILD-TYPE 212 73 99
'RELT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S4912.  Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RELT MUTATED 4 1 1
RELT WILD-TYPE 117 107 71
'RELT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 0.54

Table S4913.  Gene #492: 'RELT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RELT MUTATED 3 1 0 0 2
RELT WILD-TYPE 85 65 45 55 45
'HAUS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.12

Table S4914.  Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HAUS3 MUTATED 2 8 0 0
HAUS3 WILD-TYPE 202 129 47 3

Figure S2030.  Get High-res Image Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HAUS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S4915.  Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HAUS3 MUTATED 1 5 1 0 2
HAUS3 WILD-TYPE 38 91 43 88 78
'HAUS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 0.19

Table S4916.  Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HAUS3 MUTATED 3 1 3 1 1
HAUS3 WILD-TYPE 23 78 70 81 57
'HAUS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S4917.  Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HAUS3 MUTATED 3 4 1 1
HAUS3 WILD-TYPE 124 47 70 68
'HAUS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 0.88

Table S4918.  Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HAUS3 MUTATED 1 3 3 2 2
HAUS3 WILD-TYPE 83 82 82 67 45
'HAUS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S4919.  Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HAUS3 MUTATED 5 2 1 3
HAUS3 WILD-TYPE 90 72 120 77
'HAUS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.087

Table S4920.  Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HAUS3 MUTATED 3 5 1 0 1 1
HAUS3 WILD-TYPE 49 59 71 104 39 58

Figure S2031.  Get High-res Image Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HAUS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S4921.  Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HAUS3 MUTATED 9 0 2
HAUS3 WILD-TYPE 208 75 97
'HAUS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.15

Table S4922.  Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HAUS3 MUTATED 2 1 5
HAUS3 WILD-TYPE 119 107 67
'HAUS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.13

Table S4923.  Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HAUS3 MUTATED 2 0 3 0 3
HAUS3 WILD-TYPE 86 66 42 55 44

Figure S2032.  Get High-res Image Gene #493: 'HAUS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0068

Table S4924.  Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCDC150 MUTATED 0 10 0 0
CCDC150 WILD-TYPE 204 127 47 3

Figure S2033.  Get High-res Image Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.012

Table S4925.  Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCDC150 MUTATED 0 8 0 0 0
CCDC150 WILD-TYPE 39 88 44 88 80

Figure S2034.  Get High-res Image Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 0.21

Table S4926.  Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCDC150 MUTATED 0 3 5 0 1
CCDC150 WILD-TYPE 26 76 68 82 57
'CCDC150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S4927.  Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCDC150 MUTATED 0 8 1 0
CCDC150 WILD-TYPE 127 43 70 69

Figure S2035.  Get High-res Image Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.12

Table S4928.  Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCDC150 MUTATED 0 1 6 1 1
CCDC150 WILD-TYPE 84 84 79 68 46

Figure S2036.  Get High-res Image Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00614 (Fisher's exact test), Q value = 0.043

Table S4929.  Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCDC150 MUTATED 2 1 0 6
CCDC150 WILD-TYPE 93 73 121 74

Figure S2037.  Get High-res Image Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0657 (Fisher's exact test), Q value = 0.17

Table S4930.  Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCDC150 MUTATED 4 3 2 1 0 0
CCDC150 WILD-TYPE 48 61 70 103 40 59
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.2

Table S4931.  Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCDC150 MUTATED 9 0 1
CCDC150 WILD-TYPE 208 75 98
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.18

Table S4932.  Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCDC150 MUTATED 4 0 3
CCDC150 WILD-TYPE 117 108 69
'CCDC150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00299 (Fisher's exact test), Q value = 0.029

Table S4933.  Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCDC150 MUTATED 1 0 1 0 5
CCDC150 WILD-TYPE 87 66 44 55 42

Figure S2038.  Get High-res Image Gene #494: 'CCDC150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GLIPR1L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00557 (Fisher's exact test), Q value = 0.041

Table S4934.  Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GLIPR1L2 MUTATED 1 7 4 0
GLIPR1L2 WILD-TYPE 203 130 43 3

Figure S2039.  Get High-res Image Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GLIPR1L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.44

Table S4935.  Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GLIPR1L2 MUTATED 0 6 1 2 1
GLIPR1L2 WILD-TYPE 39 90 43 86 79
'GLIPR1L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.18

Table S4936.  Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GLIPR1L2 MUTATED 0 5 5 0 2
GLIPR1L2 WILD-TYPE 26 74 68 82 56
'GLIPR1L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0414 (Fisher's exact test), Q value = 0.13

Table S4937.  Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GLIPR1L2 MUTATED 4 5 3 0
GLIPR1L2 WILD-TYPE 123 46 68 69

Figure S2040.  Get High-res Image Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GLIPR1L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S4938.  Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GLIPR1L2 MUTATED 1 2 6 1 3
GLIPR1L2 WILD-TYPE 83 83 79 68 44
'GLIPR1L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S4939.  Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GLIPR1L2 MUTATED 4 3 1 5
GLIPR1L2 WILD-TYPE 91 71 120 75
'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00812 (Fisher's exact test), Q value = 0.05

Table S4940.  Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GLIPR1L2 MUTATED 4 6 1 1 1 0
GLIPR1L2 WILD-TYPE 48 58 71 103 39 59

Figure S2041.  Get High-res Image Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S4941.  Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GLIPR1L2 MUTATED 10 1 2
GLIPR1L2 WILD-TYPE 207 74 97
'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.17

Table S4942.  Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GLIPR1L2 MUTATED 4 1 5
GLIPR1L2 WILD-TYPE 117 107 67
'GLIPR1L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0694 (Fisher's exact test), Q value = 0.17

Table S4943.  Gene #495: 'GLIPR1L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GLIPR1L2 MUTATED 2 1 3 0 4
GLIPR1L2 WILD-TYPE 86 65 42 55 43
'ZNF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S4944.  Gene #496: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF23 MUTATED 0 1 2 0 0
ZNF23 WILD-TYPE 84 84 83 69 47
'ZNF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0876 (Fisher's exact test), Q value = 0.2

Table S4945.  Gene #496: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF23 MUTATED 0 1 0 2
ZNF23 WILD-TYPE 95 73 121 78
'ZNF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S4946.  Gene #496: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF23 MUTATED 1 0 0 2 0 0
ZNF23 WILD-TYPE 51 64 72 102 40 59
'ZNF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.766 (Fisher's exact test), Q value = 0.83

Table S4947.  Gene #496: 'ZNF23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF23 MUTATED 2 1 0
ZNF23 WILD-TYPE 215 74 99
'OSGEPL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.57

Table S4948.  Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OSGEPL1 MUTATED 1 2 1 0
OSGEPL1 WILD-TYPE 203 135 46 3
'OSGEPL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.39

Table S4949.  Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OSGEPL1 MUTATED 0 1 2 1 0
OSGEPL1 WILD-TYPE 39 95 42 87 80
'OSGEPL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S4950.  Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OSGEPL1 MUTATED 0 2 0 0 2
OSGEPL1 WILD-TYPE 26 77 73 82 56
'OSGEPL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0459 (Fisher's exact test), Q value = 0.14

Table S4951.  Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OSGEPL1 MUTATED 0 2 2 0
OSGEPL1 WILD-TYPE 127 49 69 69

Figure S2042.  Get High-res Image Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OSGEPL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.66

Table S4952.  Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OSGEPL1 MUTATED 1 0 2 0 0
OSGEPL1 WILD-TYPE 83 85 83 69 47
'OSGEPL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 0.85

Table S4953.  Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OSGEPL1 MUTATED 0 1 1 1
OSGEPL1 WILD-TYPE 95 73 120 79
'OSGEPL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4954.  Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OSGEPL1 MUTATED 0 1 1 1 0 1
OSGEPL1 WILD-TYPE 52 63 71 103 40 58
'OSGEPL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S4955.  Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OSGEPL1 MUTATED 2 1 1
OSGEPL1 WILD-TYPE 215 74 98
'OSGEPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0587 (Fisher's exact test), Q value = 0.16

Table S4956.  Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OSGEPL1 MUTATED 1 0 3
OSGEPL1 WILD-TYPE 120 108 69
'OSGEPL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.63

Table S4957.  Gene #497: 'OSGEPL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OSGEPL1 MUTATED 0 1 1 1 1
OSGEPL1 WILD-TYPE 88 65 44 54 46
'EFHA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00737 (Fisher's exact test), Q value = 0.048

Table S4958.  Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EFHA2 MUTATED 2 11 1 0
EFHA2 WILD-TYPE 202 126 46 3

Figure S2043.  Get High-res Image Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EFHA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0316 (Fisher's exact test), Q value = 0.11

Table S4959.  Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EFHA2 MUTATED 1 9 1 1 1
EFHA2 WILD-TYPE 38 87 43 87 79

Figure S2044.  Get High-res Image Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EFHA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.64

Table S4960.  Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EFHA2 MUTATED 1 3 3 2 0
EFHA2 WILD-TYPE 25 76 70 80 58
'EFHA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 0.57

Table S4961.  Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EFHA2 MUTATED 2 3 2 2
EFHA2 WILD-TYPE 125 48 69 67
'EFHA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00593 (Fisher's exact test), Q value = 0.043

Table S4962.  Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EFHA2 MUTATED 0 1 8 4 1
EFHA2 WILD-TYPE 84 84 77 65 46

Figure S2045.  Get High-res Image Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EFHA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.005 (Fisher's exact test), Q value = 0.039

Table S4963.  Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EFHA2 MUTATED 6 2 0 6
EFHA2 WILD-TYPE 89 72 121 74

Figure S2046.  Get High-res Image Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EFHA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.6

Table S4964.  Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EFHA2 MUTATED 3 2 5 2 1 1
EFHA2 WILD-TYPE 49 62 67 102 39 58
'EFHA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S4965.  Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EFHA2 MUTATED 11 1 2
EFHA2 WILD-TYPE 206 74 97
'EFHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.47

Table S4966.  Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EFHA2 MUTATED 6 2 4
EFHA2 WILD-TYPE 115 106 68
'EFHA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 0.14

Table S4967.  Gene #498: 'EFHA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EFHA2 MUTATED 4 0 2 1 5
EFHA2 WILD-TYPE 84 66 43 54 42
'CDH24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S4968.  Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDH24 MUTATED 4 9 1 0
CDH24 WILD-TYPE 200 128 46 3
'CDH24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.11

Table S4969.  Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDH24 MUTATED 2 7 1 1 0
CDH24 WILD-TYPE 37 89 43 87 80

Figure S2047.  Get High-res Image Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDH24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 0.73

Table S4970.  Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDH24 MUTATED 1 4 1 2 1
CDH24 WILD-TYPE 25 75 72 80 57
'CDH24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S4971.  Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDH24 MUTATED 2 4 2 1
CDH24 WILD-TYPE 125 47 69 68
'CDH24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0936 (Fisher's exact test), Q value = 0.21

Table S4972.  Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDH24 MUTATED 0 2 6 3 2
CDH24 WILD-TYPE 84 83 79 66 45
'CDH24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00073 (Fisher's exact test), Q value = 0.013

Table S4973.  Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDH24 MUTATED 4 1 0 8
CDH24 WILD-TYPE 91 73 121 72

Figure S2048.  Get High-res Image Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDH24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S4974.  Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDH24 MUTATED 4 3 3 2 2 0
CDH24 WILD-TYPE 48 61 69 102 38 59
'CDH24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 0.15

Table S4975.  Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDH24 MUTATED 12 0 2
CDH24 WILD-TYPE 205 75 97
'CDH24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S4976.  Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDH24 MUTATED 4 4 2
CDH24 WILD-TYPE 117 104 70
'CDH24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.073

Table S4977.  Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDH24 MUTATED 4 0 0 1 5
CDH24 WILD-TYPE 84 66 45 54 42

Figure S2049.  Get High-res Image Gene #499: 'CDH24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C6ORF150 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.77

Table S4978.  Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C6ORF150 MUTATED 4 4 0 0
C6ORF150 WILD-TYPE 200 133 47 3
'C6ORF150 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S4979.  Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C6ORF150 MUTATED 1 3 0 2 0
C6ORF150 WILD-TYPE 38 93 44 86 80
'C6ORF150 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.724 (Fisher's exact test), Q value = 0.79

Table S4980.  Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C6ORF150 MUTATED 0 3 1 1 2
C6ORF150 WILD-TYPE 26 76 72 81 56
'C6ORF150 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S4981.  Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C6ORF150 MUTATED 2 3 2 0
C6ORF150 WILD-TYPE 125 48 69 69
'C6ORF150 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0241 (Fisher's exact test), Q value = 0.094

Table S4982.  Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C6ORF150 MUTATED 1 1 6 0 0
C6ORF150 WILD-TYPE 83 84 79 69 47

Figure S2050.  Get High-res Image Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C6ORF150 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.13

Table S4983.  Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C6ORF150 MUTATED 2 0 1 5
C6ORF150 WILD-TYPE 93 74 120 75

Figure S2051.  Get High-res Image Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.11

Table S4984.  Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C6ORF150 MUTATED 4 2 1 0 0 1
C6ORF150 WILD-TYPE 48 62 71 104 40 58

Figure S2052.  Get High-res Image Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S4985.  Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C6ORF150 MUTATED 6 0 2
C6ORF150 WILD-TYPE 211 75 97
'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.43

Table S4986.  Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C6ORF150 MUTATED 4 1 0
C6ORF150 WILD-TYPE 117 107 72
'C6ORF150 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.59

Table S4987.  Gene #500: 'C6ORF150 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C6ORF150 MUTATED 2 0 0 2 1
C6ORF150 WILD-TYPE 86 66 45 53 46
'MGA MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S4988.  Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MGA MUTATED 3 20 4 0
MGA WILD-TYPE 201 117 43 3

Figure S2053.  Get High-res Image Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MGA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.0076

Table S4989.  Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MGA MUTATED 3 13 6 2 0
MGA WILD-TYPE 36 83 38 86 80

Figure S2054.  Get High-res Image Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MGA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00169 (Fisher's exact test), Q value = 0.021

Table S4990.  Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MGA MUTATED 1 11 9 0 5
MGA WILD-TYPE 25 68 64 82 53

Figure S2055.  Get High-res Image Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MGA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00185 (Fisher's exact test), Q value = 0.022

Table S4991.  Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MGA MUTATED 7 10 8 1
MGA WILD-TYPE 120 41 63 68

Figure S2056.  Get High-res Image Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S4992.  Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MGA MUTATED 1 2 17 3 3
MGA WILD-TYPE 83 83 68 66 44

Figure S2057.  Get High-res Image Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MGA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00614 (Fisher's exact test), Q value = 0.043

Table S4993.  Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MGA MUTATED 6 2 5 13
MGA WILD-TYPE 89 72 116 67

Figure S2058.  Get High-res Image Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00089 (Fisher's exact test), Q value = 0.015

Table S4994.  Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MGA MUTATED 6 11 7 2 1 1
MGA WILD-TYPE 46 53 65 102 39 58

Figure S2059.  Get High-res Image Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MGA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S4995.  Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MGA MUTATED 26 1 1
MGA WILD-TYPE 191 74 98

Figure S2060.  Get High-res Image Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00043 (Fisher's exact test), Q value = 0.0096

Table S4996.  Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MGA MUTATED 8 1 11
MGA WILD-TYPE 113 107 61

Figure S2061.  Get High-res Image Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MGA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.085

Table S4997.  Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MGA MUTATED 6 1 6 1 6
MGA WILD-TYPE 82 65 39 54 41

Figure S2062.  Get High-res Image Gene #501: 'MGA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SH3RF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.014

Table S4998.  Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SH3RF1 MUTATED 1 11 0 0
SH3RF1 WILD-TYPE 203 126 47 3

Figure S2063.  Get High-res Image Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SH3RF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.073

Table S4999.  Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SH3RF1 MUTATED 0 7 2 0 1
SH3RF1 WILD-TYPE 39 89 42 88 79

Figure S2064.  Get High-res Image Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SH3RF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.72

Table S5000.  Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SH3RF1 MUTATED 0 4 2 1 2
SH3RF1 WILD-TYPE 26 75 71 81 56
'SH3RF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.068

Table S5001.  Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SH3RF1 MUTATED 0 3 4 2
SH3RF1 WILD-TYPE 127 48 67 67

Figure S2065.  Get High-res Image Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SH3RF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0068

Table S5002.  Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SH3RF1 MUTATED 0 3 9 0 0
SH3RF1 WILD-TYPE 84 82 76 69 47

Figure S2066.  Get High-res Image Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SH3RF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.089

Table S5003.  Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SH3RF1 MUTATED 1 5 1 5
SH3RF1 WILD-TYPE 94 69 120 75

Figure S2067.  Get High-res Image Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SH3RF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0997 (Fisher's exact test), Q value = 0.22

Table S5004.  Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SH3RF1 MUTATED 2 5 3 1 1 0
SH3RF1 WILD-TYPE 50 59 69 103 39 59
'SH3RF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.2

Table S5005.  Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SH3RF1 MUTATED 9 3 0
SH3RF1 WILD-TYPE 208 72 99
'SH3RF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S5006.  Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SH3RF1 MUTATED 5 1 4
SH3RF1 WILD-TYPE 116 107 68
'SH3RF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S5007.  Gene #502: 'SH3RF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SH3RF1 MUTATED 4 1 1 0 4
SH3RF1 WILD-TYPE 84 65 44 55 43
'HTR1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.42

Table S5008.  Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HTR1E MUTATED 4 7 1 0
HTR1E WILD-TYPE 200 130 46 3
'HTR1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.11

Table S5009.  Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HTR1E MUTATED 2 7 0 2 0
HTR1E WILD-TYPE 37 89 44 86 80

Figure S2068.  Get High-res Image Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HTR1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0995 (Fisher's exact test), Q value = 0.22

Table S5010.  Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HTR1E MUTATED 1 6 3 0 2
HTR1E WILD-TYPE 25 73 70 82 56
'HTR1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0104 (Fisher's exact test), Q value = 0.058

Table S5011.  Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HTR1E MUTATED 4 6 2 0
HTR1E WILD-TYPE 123 45 69 69

Figure S2069.  Get High-res Image Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HTR1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.5

Table S5012.  Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HTR1E MUTATED 2 0 3 3 1
HTR1E WILD-TYPE 82 85 82 66 46
'HTR1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S5013.  Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HTR1E MUTATED 4 0 4 1
HTR1E WILD-TYPE 91 74 117 79
'HTR1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 0.19

Table S5014.  Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HTR1E MUTATED 3 2 4 0 2 1
HTR1E WILD-TYPE 49 62 68 104 38 58
'HTR1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0373 (Fisher's exact test), Q value = 0.12

Table S5015.  Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HTR1E MUTATED 11 0 1
HTR1E WILD-TYPE 206 75 98

Figure S2070.  Get High-res Image Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HTR1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S5016.  Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HTR1E MUTATED 6 1 4
HTR1E WILD-TYPE 115 107 68
'HTR1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S5017.  Gene #503: 'HTR1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HTR1E MUTATED 6 0 2 1 2
HTR1E WILD-TYPE 82 66 43 54 45
'FLNB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0052

Table S5018.  Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FLNB MUTATED 4 19 5 0
FLNB WILD-TYPE 200 118 42 3

Figure S2071.  Get High-res Image Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FLNB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.018

Table S5019.  Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FLNB MUTATED 3 16 2 2 2
FLNB WILD-TYPE 36 80 42 86 78

Figure S2072.  Get High-res Image Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FLNB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.41

Table S5020.  Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FLNB MUTATED 1 10 5 3 5
FLNB WILD-TYPE 25 69 68 79 53
'FLNB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0119 (Fisher's exact test), Q value = 0.063

Table S5021.  Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FLNB MUTATED 6 10 5 3
FLNB WILD-TYPE 121 41 66 66

Figure S2073.  Get High-res Image Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00887 (Fisher's exact test), Q value = 0.053

Table S5022.  Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FLNB MUTATED 2 4 14 4 2
FLNB WILD-TYPE 82 81 71 65 45

Figure S2074.  Get High-res Image Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FLNB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0023 (Fisher's exact test), Q value = 0.025

Table S5023.  Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FLNB MUTATED 5 3 4 14
FLNB WILD-TYPE 90 71 117 66

Figure S2075.  Get High-res Image Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S5024.  Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FLNB MUTATED 8 5 5 6 3 1
FLNB WILD-TYPE 44 59 67 98 37 58
'FLNB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00328 (Fisher's exact test), Q value = 0.031

Table S5025.  Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FLNB MUTATED 24 2 2
FLNB WILD-TYPE 193 73 97

Figure S2076.  Get High-res Image Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 0.74

Table S5026.  Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FLNB MUTATED 11 7 4
FLNB WILD-TYPE 110 101 68
'FLNB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0234 (Fisher's exact test), Q value = 0.092

Table S5027.  Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FLNB MUTATED 7 2 2 2 9
FLNB WILD-TYPE 81 64 43 53 38

Figure S2077.  Get High-res Image Gene #504: 'FLNB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NCAPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.077

Table S5028.  Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NCAPH MUTATED 2 9 0 0
NCAPH WILD-TYPE 202 128 47 3

Figure S2078.  Get High-res Image Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NCAPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.47

Table S5029.  Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NCAPH MUTATED 0 5 0 1 2
NCAPH WILD-TYPE 39 91 44 87 78
'NCAPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S5030.  Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NCAPH MUTATED 3 3 3 1 1
NCAPH WILD-TYPE 23 76 70 81 57
'NCAPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0969 (Fisher's exact test), Q value = 0.21

Table S5031.  Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NCAPH MUTATED 3 5 2 1
NCAPH WILD-TYPE 124 46 69 68
'NCAPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S5032.  Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NCAPH MUTATED 0 3 5 2 0
NCAPH WILD-TYPE 84 82 80 67 47
'NCAPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.64

Table S5033.  Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NCAPH MUTATED 2 2 2 4
NCAPH WILD-TYPE 93 72 119 76
'NCAPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00168 (Fisher's exact test), Q value = 0.021

Table S5034.  Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NCAPH MUTATED 3 7 0 2 0 0
NCAPH WILD-TYPE 49 57 72 102 40 59

Figure S2079.  Get High-res Image Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NCAPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 0.95

Table S5035.  Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NCAPH MUTATED 8 2 2
NCAPH WILD-TYPE 209 73 97
'NCAPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S5036.  Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NCAPH MUTATED 2 1 4
NCAPH WILD-TYPE 119 107 68
'NCAPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00662 (Fisher's exact test), Q value = 0.045

Table S5037.  Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NCAPH MUTATED 0 1 4 0 2
NCAPH WILD-TYPE 88 65 41 55 45

Figure S2080.  Get High-res Image Gene #505: 'NCAPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLFN13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.06

Table S5038.  Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLFN13 MUTATED 1 8 0 0
SLFN13 WILD-TYPE 203 129 47 3

Figure S2081.  Get High-res Image Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLFN13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S5039.  Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLFN13 MUTATED 0 3 2 0 2
SLFN13 WILD-TYPE 39 93 42 88 78
'SLFN13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 0.82

Table S5040.  Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLFN13 MUTATED 1 3 2 1 1
SLFN13 WILD-TYPE 25 76 71 81 57
'SLFN13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.011

Table S5041.  Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLFN13 MUTATED 2 6 0 0
SLFN13 WILD-TYPE 125 45 71 69

Figure S2082.  Get High-res Image Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLFN13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00596 (Fisher's exact test), Q value = 0.043

Table S5042.  Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLFN13 MUTATED 0 0 6 1 1
SLFN13 WILD-TYPE 84 85 79 68 46

Figure S2083.  Get High-res Image Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLFN13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S5043.  Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLFN13 MUTATED 2 0 2 4
SLFN13 WILD-TYPE 93 74 119 76
'SLFN13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.077

Table S5044.  Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLFN13 MUTATED 1 5 2 0 1 0
SLFN13 WILD-TYPE 51 59 70 104 39 59

Figure S2084.  Get High-res Image Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLFN13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.1

Table S5045.  Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLFN13 MUTATED 9 0 0
SLFN13 WILD-TYPE 208 75 99

Figure S2085.  Get High-res Image Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLFN13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.092

Table S5046.  Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLFN13 MUTATED 2 0 4
SLFN13 WILD-TYPE 119 108 68

Figure S2086.  Get High-res Image Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLFN13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S5047.  Gene #506: 'SLFN13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLFN13 MUTATED 2 0 2 0 2
SLFN13 WILD-TYPE 86 66 43 55 45
'GATA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.011

Table S5048.  Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GATA3 MUTATED 2 14 2 0
GATA3 WILD-TYPE 202 123 45 3

Figure S2087.  Get High-res Image Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GATA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.034

Table S5049.  Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GATA3 MUTATED 3 9 2 0 1
GATA3 WILD-TYPE 36 87 42 88 79

Figure S2088.  Get High-res Image Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GATA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.133 (Fisher's exact test), Q value = 0.26

Table S5050.  Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GATA3 MUTATED 0 4 7 1 3
GATA3 WILD-TYPE 26 75 66 81 55
'GATA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.06

Table S5051.  Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GATA3 MUTATED 2 7 3 3
GATA3 WILD-TYPE 125 44 68 66

Figure S2089.  Get High-res Image Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.067

Table S5052.  Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GATA3 MUTATED 1 5 6 0 5
GATA3 WILD-TYPE 83 80 79 69 42

Figure S2090.  Get High-res Image Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GATA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00503 (Fisher's exact test), Q value = 0.039

Table S5053.  Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GATA3 MUTATED 3 4 1 9
GATA3 WILD-TYPE 92 70 120 71

Figure S2091.  Get High-res Image Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.065

Table S5054.  Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GATA3 MUTATED 6 6 2 4 0 0
GATA3 WILD-TYPE 46 58 70 100 40 59

Figure S2092.  Get High-res Image Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GATA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.089 (Fisher's exact test), Q value = 0.2

Table S5055.  Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GATA3 MUTATED 14 3 1
GATA3 WILD-TYPE 203 72 98
'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.84

Table S5056.  Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GATA3 MUTATED 7 4 3
GATA3 WILD-TYPE 114 104 69
'GATA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.736 (Fisher's exact test), Q value = 0.8

Table S5057.  Gene #507: 'GATA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GATA3 MUTATED 6 2 1 2 3
GATA3 WILD-TYPE 82 64 44 53 44
'RDBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0239 (Fisher's exact test), Q value = 0.094

Table S5058.  Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RDBP MUTATED 1 7 2 0
RDBP WILD-TYPE 203 130 45 3

Figure S2093.  Get High-res Image Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RDBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00328 (Fisher's exact test), Q value = 0.031

Table S5059.  Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RDBP MUTATED 0 7 2 0 0
RDBP WILD-TYPE 39 89 42 88 80

Figure S2094.  Get High-res Image Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RDBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S5060.  Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RDBP MUTATED 0 3 2 0 4
RDBP WILD-TYPE 26 76 71 82 54
'RDBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0442 (Fisher's exact test), Q value = 0.13

Table S5061.  Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RDBP MUTATED 1 4 3 1
RDBP WILD-TYPE 126 47 68 68

Figure S2095.  Get High-res Image Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RDBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00293 (Fisher's exact test), Q value = 0.029

Table S5062.  Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RDBP MUTATED 0 3 7 0 0
RDBP WILD-TYPE 84 82 78 69 47

Figure S2096.  Get High-res Image Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RDBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 0.11

Table S5063.  Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RDBP MUTATED 1 2 1 6
RDBP WILD-TYPE 94 72 120 74

Figure S2097.  Get High-res Image Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RDBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S5064.  Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RDBP MUTATED 2 2 4 2 0 0
RDBP WILD-TYPE 50 62 68 102 40 59
'RDBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0773 (Fisher's exact test), Q value = 0.19

Table S5065.  Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RDBP MUTATED 9 1 0
RDBP WILD-TYPE 208 74 99
'RDBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S5066.  Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RDBP MUTATED 3 2 3
RDBP WILD-TYPE 118 106 69
'RDBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0652 (Fisher's exact test), Q value = 0.17

Table S5067.  Gene #508: 'RDBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RDBP MUTATED 3 1 0 0 4
RDBP WILD-TYPE 85 65 45 55 43
'TNRC6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.013

Table S5068.  Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TNRC6C MUTATED 1 12 1 0
TNRC6C WILD-TYPE 203 125 46 3

Figure S2098.  Get High-res Image Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNRC6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.11

Table S5069.  Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TNRC6C MUTATED 1 7 2 0 1
TNRC6C WILD-TYPE 38 89 42 88 79

Figure S2099.  Get High-res Image Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TNRC6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S5070.  Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TNRC6C MUTATED 2 2 3 0 3
TNRC6C WILD-TYPE 24 77 70 82 55
'TNRC6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0203 (Fisher's exact test), Q value = 0.085

Table S5071.  Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TNRC6C MUTATED 4 5 1 0
TNRC6C WILD-TYPE 123 46 70 69

Figure S2100.  Get High-res Image Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S5072.  Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TNRC6C MUTATED 0 0 9 2 4
TNRC6C WILD-TYPE 84 85 76 67 43

Figure S2101.  Get High-res Image Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNRC6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S5073.  Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TNRC6C MUTATED 3 0 1 11
TNRC6C WILD-TYPE 92 74 120 69

Figure S2102.  Get High-res Image Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00115 (Fisher's exact test), Q value = 0.017

Table S5074.  Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TNRC6C MUTATED 5 7 2 1 0 0
TNRC6C WILD-TYPE 47 57 70 103 40 59

Figure S2103.  Get High-res Image Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00075 (Fisher's exact test), Q value = 0.013

Table S5075.  Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TNRC6C MUTATED 15 0 0
TNRC6C WILD-TYPE 202 75 99

Figure S2104.  Get High-res Image Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S5076.  Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TNRC6C MUTATED 5 0 4
TNRC6C WILD-TYPE 116 108 68

Figure S2105.  Get High-res Image Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TNRC6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.072

Table S5077.  Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TNRC6C MUTATED 2 0 3 0 4
TNRC6C WILD-TYPE 86 66 42 55 43

Figure S2106.  Get High-res Image Gene #509: 'TNRC6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S5078.  Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF292 MUTATED 3 21 4 0
ZNF292 WILD-TYPE 201 116 43 3

Figure S2107.  Get High-res Image Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF292 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0062

Table S5079.  Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF292 MUTATED 3 15 4 1 1
ZNF292 WILD-TYPE 36 81 40 87 79

Figure S2108.  Get High-res Image Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF292 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S5080.  Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF292 MUTATED 2 8 8 2 6
ZNF292 WILD-TYPE 24 71 65 80 52
'ZNF292 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S5081.  Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF292 MUTATED 5 15 4 2
ZNF292 WILD-TYPE 122 36 67 67

Figure S2109.  Get High-res Image Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S5082.  Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF292 MUTATED 2 4 18 2 2
ZNF292 WILD-TYPE 82 81 67 67 45

Figure S2110.  Get High-res Image Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF292 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00297 (Fisher's exact test), Q value = 0.029

Table S5083.  Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF292 MUTATED 7 3 4 14
ZNF292 WILD-TYPE 88 71 117 66

Figure S2111.  Get High-res Image Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0889 (Fisher's exact test), Q value = 0.2

Table S5084.  Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF292 MUTATED 8 8 4 5 2 2
ZNF292 WILD-TYPE 44 56 68 99 38 57
'ZNF292 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 0.1

Table S5085.  Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF292 MUTATED 23 3 3
ZNF292 WILD-TYPE 194 72 96

Figure S2112.  Get High-res Image Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0789 (Fisher's exact test), Q value = 0.19

Table S5086.  Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF292 MUTATED 11 3 7
ZNF292 WILD-TYPE 110 105 65
'ZNF292 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.076

Table S5087.  Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF292 MUTATED 7 1 5 1 7
ZNF292 WILD-TYPE 81 65 40 54 40

Figure S2113.  Get High-res Image Gene #510: 'ZNF292 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TPTE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5088.  Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TPTE2 MUTATED 9 6 2 0
TPTE2 WILD-TYPE 195 131 45 3
'TPTE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S5089.  Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TPTE2 MUTATED 2 5 0 7 1
TPTE2 WILD-TYPE 37 91 44 81 79
'TPTE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S5090.  Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TPTE2 MUTATED 3 4 4 1 3
TPTE2 WILD-TYPE 23 75 69 81 55
'TPTE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.35

Table S5091.  Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TPTE2 MUTATED 6 5 3 1
TPTE2 WILD-TYPE 121 46 68 68
'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S5092.  Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TPTE2 MUTATED 5 1 5 1 4
TPTE2 WILD-TYPE 79 84 80 68 43
'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00469 (Fisher's exact test), Q value = 0.037

Table S5093.  Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TPTE2 MUTATED 4 0 3 9
TPTE2 WILD-TYPE 91 74 118 71

Figure S2114.  Get High-res Image Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S5094.  Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TPTE2 MUTATED 3 4 2 1 2 4
TPTE2 WILD-TYPE 49 60 70 103 38 55
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S5095.  Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TPTE2 MUTATED 11 0 5
TPTE2 WILD-TYPE 206 75 94
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S5096.  Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TPTE2 MUTATED 6 2 4
TPTE2 WILD-TYPE 115 106 68
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S5097.  Gene #511: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TPTE2 MUTATED 4 0 3 2 3
TPTE2 WILD-TYPE 84 66 42 53 44
'FBXO48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S5098.  Gene #512: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FBXO48 MUTATED 1 3 0 0
FBXO48 WILD-TYPE 203 134 47 3
'FBXO48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S5099.  Gene #512: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FBXO48 MUTATED 1 2 0 1 0
FBXO48 WILD-TYPE 38 94 44 87 80
'FBXO48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 0.15

Table S5100.  Gene #512: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FBXO48 MUTATED 1 3 0 0 0
FBXO48 WILD-TYPE 25 76 73 82 58
'FBXO48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S5101.  Gene #512: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FBXO48 MUTATED 1 2 1 0
FBXO48 WILD-TYPE 126 49 70 69
'FBXO48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 0.77

Table S5102.  Gene #512: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FBXO48 MUTATED 1 0 2 1 1
FBXO48 WILD-TYPE 83 85 83 68 46
'FBXO48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S5103.  Gene #512: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FBXO48 MUTATED 1 0 1 3
FBXO48 WILD-TYPE 94 74 120 77
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S5104.  Gene #512: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FBXO48 MUTATED 1 3 1 0 0 0
FBXO48 WILD-TYPE 51 61 71 104 40 59
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S5105.  Gene #512: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FBXO48 MUTATED 5 0 0
FBXO48 WILD-TYPE 212 75 99
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S5106.  Gene #512: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FBXO48 MUTATED 2 0 2
FBXO48 WILD-TYPE 119 108 70
'FBXO48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.37

Table S5107.  Gene #512: 'FBXO48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FBXO48 MUTATED 1 0 1 0 2
FBXO48 WILD-TYPE 87 66 44 55 45
'KRTAP5-5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00987 (Fisher's exact test), Q value = 0.056

Table S5108.  Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KRTAP5-5 MUTATED 0 6 0 0
KRTAP5-5 WILD-TYPE 204 131 47 3

Figure S2115.  Get High-res Image Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRTAP5-5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.36

Table S5109.  Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KRTAP5-5 MUTATED 0 4 1 0 1
KRTAP5-5 WILD-TYPE 39 92 43 88 79
'KRTAP5-5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S5110.  Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KRTAP5-5 MUTATED 1 3 1 0 0
KRTAP5-5 WILD-TYPE 25 76 72 82 58
'KRTAP5-5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S5111.  Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KRTAP5-5 MUTATED 1 2 2 0
KRTAP5-5 WILD-TYPE 126 49 69 69
'KRTAP5-5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 0.73

Table S5112.  Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KRTAP5-5 MUTATED 0 1 2 2 1
KRTAP5-5 WILD-TYPE 84 84 83 67 46
'KRTAP5-5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S5113.  Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KRTAP5-5 MUTATED 2 0 1 3
KRTAP5-5 WILD-TYPE 93 74 120 77
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S5114.  Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KRTAP5-5 MUTATED 2 2 2 0 0 0
KRTAP5-5 WILD-TYPE 50 62 70 104 40 59
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.52

Table S5115.  Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KRTAP5-5 MUTATED 5 1 0
KRTAP5-5 WILD-TYPE 212 74 99
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S5116.  Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KRTAP5-5 MUTATED 2 0 2
KRTAP5-5 WILD-TYPE 119 108 70
'KRTAP5-5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S5117.  Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KRTAP5-5 MUTATED 0 0 2 0 2
KRTAP5-5 WILD-TYPE 88 66 43 55 45

Figure S2116.  Get High-res Image Gene #513: 'KRTAP5-5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SERPINB12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.62

Table S5118.  Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SERPINB12 MUTATED 2 3 1 0
SERPINB12 WILD-TYPE 202 134 46 3
'SERPINB12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.57

Table S5119.  Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SERPINB12 MUTATED 0 3 0 1 0
SERPINB12 WILD-TYPE 39 93 44 87 80
'SERPINB12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S5120.  Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SERPINB12 MUTATED 0 1 1 0 1
SERPINB12 WILD-TYPE 26 78 72 82 57
'SERPINB12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S5121.  Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SERPINB12 MUTATED 1 2 0 0
SERPINB12 WILD-TYPE 126 49 71 69
'SERPINB12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S5122.  Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SERPINB12 MUTATED 1 1 3 0 1
SERPINB12 WILD-TYPE 83 84 82 69 46
'SERPINB12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0657 (Fisher's exact test), Q value = 0.17

Table S5123.  Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SERPINB12 MUTATED 1 0 1 4
SERPINB12 WILD-TYPE 94 74 120 76
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S5124.  Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SERPINB12 MUTATED 2 2 1 0 0 1
SERPINB12 WILD-TYPE 50 62 71 104 40 58
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.65

Table S5125.  Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SERPINB12 MUTATED 5 0 1
SERPINB12 WILD-TYPE 212 75 98
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5126.  Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SERPINB12 MUTATED 2 1 1
SERPINB12 WILD-TYPE 119 107 71
'SERPINB12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 0.12

Table S5127.  Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SERPINB12 MUTATED 1 0 0 0 3
SERPINB12 WILD-TYPE 87 66 45 55 44

Figure S2117.  Get High-res Image Gene #514: 'SERPINB12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TAF7L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.061

Table S5128.  Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TAF7L MUTATED 1 8 0 0
TAF7L WILD-TYPE 203 129 47 3

Figure S2118.  Get High-res Image Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TAF7L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0888 (Fisher's exact test), Q value = 0.2

Table S5129.  Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TAF7L MUTATED 0 4 3 0 2
TAF7L WILD-TYPE 39 92 41 88 78
'TAF7L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S5130.  Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TAF7L MUTATED 1 5 1 1 1
TAF7L WILD-TYPE 25 74 72 81 57
'TAF7L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S5131.  Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TAF7L MUTATED 1 2 4 2
TAF7L WILD-TYPE 126 49 67 67
'TAF7L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00126 (Fisher's exact test), Q value = 0.018

Table S5132.  Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TAF7L MUTATED 0 1 7 0 0
TAF7L WILD-TYPE 84 84 78 69 47

Figure S2119.  Get High-res Image Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TAF7L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.82

Table S5133.  Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TAF7L MUTATED 2 1 2 3
TAF7L WILD-TYPE 93 73 119 77
'TAF7L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.008 (Fisher's exact test), Q value = 0.05

Table S5134.  Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TAF7L MUTATED 1 5 3 0 0 0
TAF7L WILD-TYPE 51 59 69 104 40 59

Figure S2120.  Get High-res Image Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TAF7L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0981 (Fisher's exact test), Q value = 0.21

Table S5135.  Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TAF7L MUTATED 8 1 0
TAF7L WILD-TYPE 209 74 99
'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.012

Table S5136.  Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TAF7L MUTATED 0 1 6
TAF7L WILD-TYPE 121 107 66

Figure S2121.  Get High-res Image Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TAF7L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.45

Table S5137.  Gene #515: 'TAF7L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TAF7L MUTATED 2 1 3 0 1
TAF7L WILD-TYPE 86 65 42 55 46
'INTS12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S5138.  Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
INTS12 MUTATED 1 5 0 0
INTS12 WILD-TYPE 203 132 47 3
'INTS12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.57

Table S5139.  Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
INTS12 MUTATED 0 3 0 1 0
INTS12 WILD-TYPE 39 93 44 87 80
'INTS12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 0.95

Table S5140.  Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
INTS12 MUTATED 0 1 1 2 2
INTS12 WILD-TYPE 26 78 72 80 56
'INTS12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00156 (Fisher's exact test), Q value = 0.02

Table S5141.  Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
INTS12 MUTATED 0 4 0 2
INTS12 WILD-TYPE 127 47 71 67

Figure S2122.  Get High-res Image Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'INTS12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S5142.  Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
INTS12 MUTATED 0 1 3 0 1
INTS12 WILD-TYPE 84 84 82 69 46
'INTS12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S5143.  Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
INTS12 MUTATED 1 2 0 2
INTS12 WILD-TYPE 94 72 121 78
'INTS12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S5144.  Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
INTS12 MUTATED 1 3 1 1 0 0
INTS12 WILD-TYPE 51 61 71 103 40 59
'INTS12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.65

Table S5145.  Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
INTS12 MUTATED 5 0 1
INTS12 WILD-TYPE 212 75 98
'INTS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.66

Table S5146.  Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
INTS12 MUTATED 1 1 2
INTS12 WILD-TYPE 120 107 70
'INTS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S5147.  Gene #516: 'INTS12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
INTS12 MUTATED 0 0 1 1 2
INTS12 WILD-TYPE 88 66 44 54 45
'CTSA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.19

Table S5148.  Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CTSA MUTATED 0 3 1 0
CTSA WILD-TYPE 204 134 46 3
'CTSA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S5149.  Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CTSA MUTATED 0 2 0 0 1
CTSA WILD-TYPE 39 94 44 88 79
'CTSA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 0.83

Table S5150.  Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CTSA MUTATED 0 2 0 1 1
CTSA WILD-TYPE 26 77 73 81 57
'CTSA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.905 (Fisher's exact test), Q value = 0.94

Table S5151.  Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CTSA MUTATED 1 1 1 1
CTSA WILD-TYPE 126 50 70 68
'CTSA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0741 (Fisher's exact test), Q value = 0.18

Table S5152.  Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CTSA MUTATED 0 0 3 0 1
CTSA WILD-TYPE 84 85 82 69 46
'CTSA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5153.  Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CTSA MUTATED 1 1 1 1
CTSA WILD-TYPE 94 73 120 79
'CTSA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 0.13

Table S5154.  Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CTSA MUTATED 1 3 0 0 1 0
CTSA WILD-TYPE 51 61 72 104 39 59

Figure S2123.  Get High-res Image Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CTSA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.44

Table S5155.  Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CTSA MUTATED 3 2 0
CTSA WILD-TYPE 214 73 99
'CTSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.38

Table S5156.  Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CTSA MUTATED 1 0 2
CTSA WILD-TYPE 120 108 70
'CTSA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.66

Table S5157.  Gene #517: 'CTSA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CTSA MUTATED 1 0 1 0 1
CTSA WILD-TYPE 87 66 44 55 46
'C1QA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0286 (Fisher's exact test), Q value = 0.1

Table S5158.  Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C1QA MUTATED 0 5 0 0
C1QA WILD-TYPE 204 132 47 3

Figure S2124.  Get High-res Image Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C1QA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S5159.  Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C1QA MUTATED 0 2 2 0 1
C1QA WILD-TYPE 39 94 42 88 79
'C1QA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0729 (Fisher's exact test), Q value = 0.18

Table S5160.  Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C1QA MUTATED 0 3 0 0 0
C1QA WILD-TYPE 26 76 73 82 58
'C1QA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S5161.  Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C1QA MUTATED 0 1 2 0
C1QA WILD-TYPE 127 50 69 69
'C1QA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0734 (Fisher's exact test), Q value = 0.18

Table S5162.  Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C1QA MUTATED 0 0 3 0 1
C1QA WILD-TYPE 84 85 82 69 46
'C1QA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0863 (Fisher's exact test), Q value = 0.2

Table S5163.  Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C1QA MUTATED 0 0 1 3
C1QA WILD-TYPE 95 74 120 77
'C1QA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S5164.  Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C1QA MUTATED 2 2 0 1 0 0
C1QA WILD-TYPE 50 62 72 103 40 59
'C1QA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.44

Table S5165.  Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C1QA MUTATED 3 2 0
C1QA WILD-TYPE 214 73 99
'C1QA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S5166.  Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C1QA MUTATED 3 0 2
C1QA WILD-TYPE 118 108 70
'C1QA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 0.66

Table S5167.  Gene #518: 'C1QA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C1QA MUTATED 1 1 1 0 2
C1QA WILD-TYPE 87 65 44 55 45
'KCNN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0053 (Fisher's exact test), Q value = 0.04

Table S5168.  Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCNN3 MUTATED 1 9 0 0
KCNN3 WILD-TYPE 203 128 47 3

Figure S2125.  Get High-res Image Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00975 (Fisher's exact test), Q value = 0.056

Table S5169.  Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCNN3 MUTATED 1 6 0 0 0
KCNN3 WILD-TYPE 38 90 44 88 80

Figure S2126.  Get High-res Image Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.67

Table S5170.  Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCNN3 MUTATED 0 2 4 1 2
KCNN3 WILD-TYPE 26 77 69 81 56
'KCNN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00171 (Fisher's exact test), Q value = 0.021

Table S5171.  Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCNN3 MUTATED 2 6 0 1
KCNN3 WILD-TYPE 125 45 71 68

Figure S2127.  Get High-res Image Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.18

Table S5172.  Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCNN3 MUTATED 0 1 5 1 2
KCNN3 WILD-TYPE 84 84 80 68 45
'KCNN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00402 (Fisher's exact test), Q value = 0.034

Table S5173.  Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCNN3 MUTATED 1 2 0 6
KCNN3 WILD-TYPE 94 72 121 74

Figure S2128.  Get High-res Image Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S5174.  Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCNN3 MUTATED 4 2 2 1 1 0
KCNN3 WILD-TYPE 48 62 70 103 39 59
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5175.  Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCNN3 MUTATED 6 2 2
KCNN3 WILD-TYPE 211 73 97
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 0.9

Table S5176.  Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCNN3 MUTATED 3 1 1
KCNN3 WILD-TYPE 118 107 71
'KCNN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S5177.  Gene #519: 'KCNN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCNN3 MUTATED 4 1 0 0 0
KCNN3 WILD-TYPE 84 65 45 55 47
'NPHS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.57

Table S5178.  Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NPHS1 MUTATED 6 8 1 0
NPHS1 WILD-TYPE 198 129 46 3
'NPHS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.15

Table S5179.  Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NPHS1 MUTATED 2 6 1 0 6
NPHS1 WILD-TYPE 37 90 43 88 74
'NPHS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.44

Table S5180.  Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NPHS1 MUTATED 1 1 3 3 5
NPHS1 WILD-TYPE 25 78 70 79 53
'NPHS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 0.91

Table S5181.  Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NPHS1 MUTATED 5 3 2 3
NPHS1 WILD-TYPE 122 48 69 66
'NPHS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.14

Table S5182.  Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NPHS1 MUTATED 0 4 7 2 3
NPHS1 WILD-TYPE 84 81 78 67 44

Figure S2129.  Get High-res Image Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NPHS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.49

Table S5183.  Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NPHS1 MUTATED 3 5 3 5
NPHS1 WILD-TYPE 92 69 118 75
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0681 (Fisher's exact test), Q value = 0.17

Table S5184.  Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NPHS1 MUTATED 5 2 1 7 1 0
NPHS1 WILD-TYPE 47 62 71 97 39 59
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S5185.  Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NPHS1 MUTATED 11 4 1
NPHS1 WILD-TYPE 206 71 98
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S5186.  Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NPHS1 MUTATED 5 6 2
NPHS1 WILD-TYPE 116 102 70
'NPHS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S5187.  Gene #520: 'NPHS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NPHS1 MUTATED 4 3 1 1 4
NPHS1 WILD-TYPE 84 63 44 54 43
'HSP90B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0033 (Fisher's exact test), Q value = 0.031

Table S5188.  Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HSP90B1 MUTATED 0 8 1 0
HSP90B1 WILD-TYPE 204 129 46 3

Figure S2130.  Get High-res Image Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HSP90B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S5189.  Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HSP90B1 MUTATED 2 3 1 0 1
HSP90B1 WILD-TYPE 37 93 43 88 79
'HSP90B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S5190.  Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HSP90B1 MUTATED 2 1 0 1 2
HSP90B1 WILD-TYPE 24 78 73 81 56
'HSP90B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.56

Table S5191.  Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HSP90B1 MUTATED 3 2 0 1
HSP90B1 WILD-TYPE 124 49 71 68
'HSP90B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.16

Table S5192.  Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HSP90B1 MUTATED 1 0 5 2 0
HSP90B1 WILD-TYPE 83 85 80 67 47
'HSP90B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.56

Table S5193.  Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HSP90B1 MUTATED 3 1 1 3
HSP90B1 WILD-TYPE 92 73 120 77
'HSP90B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.6

Table S5194.  Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HSP90B1 MUTATED 3 2 1 1 1 1
HSP90B1 WILD-TYPE 49 62 71 103 39 58
'HSP90B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.68

Table S5195.  Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HSP90B1 MUTATED 7 1 1
HSP90B1 WILD-TYPE 210 74 98
'HSP90B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S5196.  Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HSP90B1 MUTATED 3 0 2
HSP90B1 WILD-TYPE 118 108 70
'HSP90B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 0.52

Table S5197.  Gene #521: 'HSP90B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HSP90B1 MUTATED 3 0 1 0 1
HSP90B1 WILD-TYPE 85 66 44 55 46
'P2RY4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 0.95

Table S5198.  Gene #522: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
P2RY4 MUTATED 6 5 1 0
P2RY4 WILD-TYPE 198 132 46 3
'P2RY4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 0.6

Table S5199.  Gene #522: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
P2RY4 MUTATED 2 5 0 2 2
P2RY4 WILD-TYPE 37 91 44 86 78
'P2RY4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.67

Table S5200.  Gene #522: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
P2RY4 MUTATED 1 2 3 2 0
P2RY4 WILD-TYPE 25 77 70 80 58
'P2RY4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.44

Table S5201.  Gene #522: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
P2RY4 MUTATED 5 2 1 0
P2RY4 WILD-TYPE 122 49 70 69
'P2RY4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.743 (Fisher's exact test), Q value = 0.81

Table S5202.  Gene #522: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
P2RY4 MUTATED 3 3 2 3 0
P2RY4 WILD-TYPE 81 82 83 66 47
'P2RY4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 0.74

Table S5203.  Gene #522: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
P2RY4 MUTATED 4 3 3 1
P2RY4 WILD-TYPE 91 71 118 79
'P2RY4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S5204.  Gene #522: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
P2RY4 MUTATED 1 2 2 3 2 2
P2RY4 WILD-TYPE 51 62 70 101 38 57
'P2RY4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.75

Table S5205.  Gene #522: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
P2RY4 MUTATED 8 1 3
P2RY4 WILD-TYPE 209 74 96
'P2RY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 0.9

Table S5206.  Gene #522: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
P2RY4 MUTATED 5 3 3
P2RY4 WILD-TYPE 116 105 69
'P2RY4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 0.76

Table S5207.  Gene #522: 'P2RY4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
P2RY4 MUTATED 2 2 1 3 3
P2RY4 WILD-TYPE 86 64 44 52 44
'LRFN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.062

Table S5208.  Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LRFN3 MUTATED 5 15 2 0
LRFN3 WILD-TYPE 199 122 45 3

Figure S2131.  Get High-res Image Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRFN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S5209.  Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LRFN3 MUTATED 0 15 2 0 2
LRFN3 WILD-TYPE 39 81 42 88 78

Figure S2132.  Get High-res Image Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRFN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.16

Table S5210.  Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LRFN3 MUTATED 1 8 2 1 5
LRFN3 WILD-TYPE 25 71 71 81 53
'LRFN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00104 (Fisher's exact test), Q value = 0.016

Table S5211.  Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LRFN3 MUTATED 4 8 5 0
LRFN3 WILD-TYPE 123 43 66 69

Figure S2133.  Get High-res Image Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRFN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.088

Table S5212.  Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LRFN3 MUTATED 1 3 9 7 1
LRFN3 WILD-TYPE 83 82 76 62 46

Figure S2134.  Get High-res Image Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRFN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00877 (Fisher's exact test), Q value = 0.053

Table S5213.  Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LRFN3 MUTATED 11 2 2 6
LRFN3 WILD-TYPE 84 72 119 74

Figure S2135.  Get High-res Image Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRFN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.16

Table S5214.  Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LRFN3 MUTATED 3 6 8 2 2 1
LRFN3 WILD-TYPE 49 58 64 102 38 58
'LRFN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0782 (Fisher's exact test), Q value = 0.19

Table S5215.  Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LRFN3 MUTATED 17 1 4
LRFN3 WILD-TYPE 200 74 95
'LRFN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.4

Table S5216.  Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LRFN3 MUTATED 7 3 6
LRFN3 WILD-TYPE 114 105 66
'LRFN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S5217.  Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LRFN3 MUTATED 3 1 3 2 7
LRFN3 WILD-TYPE 85 65 42 53 40

Figure S2136.  Get High-res Image Gene #523: 'LRFN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SMARCB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00523 (Fisher's exact test), Q value = 0.04

Table S5218.  Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SMARCB1 MUTATED 1 9 3 0
SMARCB1 WILD-TYPE 203 128 44 3

Figure S2137.  Get High-res Image Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SMARCB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00299 (Fisher's exact test), Q value = 0.029

Table S5219.  Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SMARCB1 MUTATED 1 8 1 0 0
SMARCB1 WILD-TYPE 38 88 43 88 80

Figure S2138.  Get High-res Image Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMARCB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.098

Table S5220.  Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SMARCB1 MUTATED 0 5 6 0 1
SMARCB1 WILD-TYPE 26 74 67 82 57

Figure S2139.  Get High-res Image Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SMARCB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S5221.  Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SMARCB1 MUTATED 5 3 4 0
SMARCB1 WILD-TYPE 122 48 67 69
'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S5222.  Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SMARCB1 MUTATED 0 3 4 2 3
SMARCB1 WILD-TYPE 84 82 81 67 44
'SMARCB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.091

Table S5223.  Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SMARCB1 MUTATED 4 3 0 5
SMARCB1 WILD-TYPE 91 71 121 75

Figure S2140.  Get High-res Image Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S5224.  Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SMARCB1 MUTATED 3 5 2 3 0 0
SMARCB1 WILD-TYPE 49 59 70 101 40 59
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0431 (Fisher's exact test), Q value = 0.13

Table S5225.  Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SMARCB1 MUTATED 11 2 0
SMARCB1 WILD-TYPE 206 73 99

Figure S2141.  Get High-res Image Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S5226.  Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SMARCB1 MUTATED 2 3 2
SMARCB1 WILD-TYPE 119 105 70
'SMARCB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S5227.  Gene #524: 'SMARCB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SMARCB1 MUTATED 1 2 1 0 3
SMARCB1 WILD-TYPE 87 64 44 55 44
'ITGA6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0497 (Fisher's exact test), Q value = 0.14

Table S5228.  Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ITGA6 MUTATED 1 6 2 0
ITGA6 WILD-TYPE 203 131 45 3

Figure S2142.  Get High-res Image Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITGA6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.53

Table S5229.  Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ITGA6 MUTATED 1 3 1 0 1
ITGA6 WILD-TYPE 38 93 43 88 79
'ITGA6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S5230.  Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ITGA6 MUTATED 0 3 2 0 4
ITGA6 WILD-TYPE 26 76 71 82 54
'ITGA6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00065 (Fisher's exact test), Q value = 0.012

Table S5231.  Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ITGA6 MUTATED 1 6 2 0
ITGA6 WILD-TYPE 126 45 69 69

Figure S2143.  Get High-res Image Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ITGA6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00189 (Fisher's exact test), Q value = 0.022

Table S5232.  Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ITGA6 MUTATED 0 0 7 1 1
ITGA6 WILD-TYPE 84 85 78 68 46

Figure S2144.  Get High-res Image Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ITGA6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0154 (Fisher's exact test), Q value = 0.072

Table S5233.  Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ITGA6 MUTATED 1 0 2 6
ITGA6 WILD-TYPE 94 74 119 74

Figure S2145.  Get High-res Image Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.1

Table S5234.  Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ITGA6 MUTATED 2 3 4 0 0 0
ITGA6 WILD-TYPE 50 61 68 104 40 59

Figure S2146.  Get High-res Image Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITGA6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0985 (Fisher's exact test), Q value = 0.21

Table S5235.  Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ITGA6 MUTATED 8 1 0
ITGA6 WILD-TYPE 209 74 99
'ITGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S5236.  Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ITGA6 MUTATED 3 0 2
ITGA6 WILD-TYPE 118 108 70
'ITGA6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0699 (Fisher's exact test), Q value = 0.18

Table S5237.  Gene #525: 'ITGA6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ITGA6 MUTATED 1 0 1 0 3
ITGA6 WILD-TYPE 87 66 44 55 44
'TRIP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.19

Table S5238.  Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TRIP11 MUTATED 4 9 0 0
TRIP11 WILD-TYPE 200 128 47 3
'TRIP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 0.53

Table S5239.  Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TRIP11 MUTATED 1 6 2 2 1
TRIP11 WILD-TYPE 38 90 42 86 79
'TRIP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.11

Table S5240.  Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TRIP11 MUTATED 2 3 6 0 1
TRIP11 WILD-TYPE 24 76 67 82 57

Figure S2147.  Get High-res Image Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TRIP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0105 (Fisher's exact test), Q value = 0.058

Table S5241.  Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TRIP11 MUTATED 4 6 2 0
TRIP11 WILD-TYPE 123 45 69 69

Figure S2148.  Get High-res Image Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S5242.  Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TRIP11 MUTATED 3 1 5 0 2
TRIP11 WILD-TYPE 81 84 80 69 45
'TRIP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0205 (Fisher's exact test), Q value = 0.085

Table S5243.  Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TRIP11 MUTATED 0 1 4 6
TRIP11 WILD-TYPE 95 73 117 74

Figure S2149.  Get High-res Image Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S5244.  Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TRIP11 MUTATED 4 3 2 2 0 2
TRIP11 WILD-TYPE 48 61 70 102 40 57
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.693 (Fisher's exact test), Q value = 0.77

Table S5245.  Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TRIP11 MUTATED 9 2 2
TRIP11 WILD-TYPE 208 73 97
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S5246.  Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TRIP11 MUTATED 6 1 4
TRIP11 WILD-TYPE 115 107 68
'TRIP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.52

Table S5247.  Gene #526: 'TRIP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TRIP11 MUTATED 4 2 3 0 2
TRIP11 WILD-TYPE 84 64 42 55 45
'PNPLA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00788 (Fisher's exact test), Q value = 0.049

Table S5248.  Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PNPLA7 MUTATED 6 16 1 0
PNPLA7 WILD-TYPE 198 121 46 3

Figure S2150.  Get High-res Image Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PNPLA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00228 (Fisher's exact test), Q value = 0.025

Table S5249.  Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PNPLA7 MUTATED 0 11 5 2 1
PNPLA7 WILD-TYPE 39 85 39 86 79

Figure S2151.  Get High-res Image Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PNPLA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.11

Table S5250.  Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PNPLA7 MUTATED 1 7 4 0 5
PNPLA7 WILD-TYPE 25 72 69 82 53

Figure S2152.  Get High-res Image Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PNPLA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.077

Table S5251.  Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PNPLA7 MUTATED 3 7 5 2
PNPLA7 WILD-TYPE 124 44 66 67

Figure S2153.  Get High-res Image Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PNPLA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0298 (Fisher's exact test), Q value = 0.11

Table S5252.  Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PNPLA7 MUTATED 1 4 11 4 2
PNPLA7 WILD-TYPE 83 81 74 65 45

Figure S2154.  Get High-res Image Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PNPLA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0612 (Fisher's exact test), Q value = 0.16

Table S5253.  Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PNPLA7 MUTATED 7 3 3 9
PNPLA7 WILD-TYPE 88 71 118 71
'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 0.19

Table S5254.  Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PNPLA7 MUTATED 5 8 4 3 2 1
PNPLA7 WILD-TYPE 47 56 68 101 38 58
'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.11

Table S5255.  Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PNPLA7 MUTATED 19 2 2
PNPLA7 WILD-TYPE 198 73 97

Figure S2155.  Get High-res Image Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S5256.  Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PNPLA7 MUTATED 8 3 6
PNPLA7 WILD-TYPE 113 105 66
'PNPLA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0779 (Fisher's exact test), Q value = 0.19

Table S5257.  Gene #527: 'PNPLA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PNPLA7 MUTATED 6 1 3 1 6
PNPLA7 WILD-TYPE 82 65 42 54 41
'C7ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0567 (Fisher's exact test), Q value = 0.15

Table S5258.  Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C7ORF49 MUTATED 1 6 0 0
C7ORF49 WILD-TYPE 203 131 47 3
'C7ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S5259.  Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C7ORF49 MUTATED 0 6 1 0 0
C7ORF49 WILD-TYPE 39 90 43 88 80

Figure S2156.  Get High-res Image Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C7ORF49 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S5260.  Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C7ORF49 MUTATED 0 1 3 0 0
C7ORF49 WILD-TYPE 26 78 70 82 58
'C7ORF49 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0936 (Fisher's exact test), Q value = 0.21

Table S5261.  Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C7ORF49 MUTATED 0 2 1 1
C7ORF49 WILD-TYPE 127 49 70 68
'C7ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 0.15

Table S5262.  Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C7ORF49 MUTATED 0 1 5 1 0
C7ORF49 WILD-TYPE 84 84 80 68 47
'C7ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0103 (Fisher's exact test), Q value = 0.057

Table S5263.  Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C7ORF49 MUTATED 1 1 0 5
C7ORF49 WILD-TYPE 94 73 121 75

Figure S2157.  Get High-res Image Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S5264.  Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C7ORF49 MUTATED 3 1 1 1 1 0
C7ORF49 WILD-TYPE 49 63 71 103 39 59
'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S5265.  Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C7ORF49 MUTATED 6 0 1
C7ORF49 WILD-TYPE 211 75 98
'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.57

Table S5266.  Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C7ORF49 MUTATED 3 1 0
C7ORF49 WILD-TYPE 118 107 72
'C7ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.45

Table S5267.  Gene #528: 'C7ORF49 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C7ORF49 MUTATED 3 0 0 0 1
C7ORF49 WILD-TYPE 85 66 45 55 46
'C14ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.091

Table S5268.  Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C14ORF50 MUTATED 1 7 0 0
C14ORF50 WILD-TYPE 203 130 47 3

Figure S2158.  Get High-res Image Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C14ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.43

Table S5269.  Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C14ORF50 MUTATED 1 2 2 0 1
C14ORF50 WILD-TYPE 38 94 42 88 79
'C14ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 0.19

Table S5270.  Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C14ORF50 MUTATED 0 3 1 0 4
C14ORF50 WILD-TYPE 26 76 72 82 54
'C14ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.77

Table S5271.  Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C14ORF50 MUTATED 2 2 2 2
C14ORF50 WILD-TYPE 125 49 69 67
'C14ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.63

Table S5272.  Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C14ORF50 MUTATED 0 3 2 1 1
C14ORF50 WILD-TYPE 84 82 83 68 46
'C14ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S5273.  Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C14ORF50 MUTATED 1 3 1 2
C14ORF50 WILD-TYPE 94 71 120 78
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.15

Table S5274.  Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C14ORF50 MUTATED 2 4 0 1 1 0
C14ORF50 WILD-TYPE 50 60 72 103 39 59
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5275.  Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C14ORF50 MUTATED 5 1 2
C14ORF50 WILD-TYPE 212 74 97
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S5276.  Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C14ORF50 MUTATED 3 0 3
C14ORF50 WILD-TYPE 118 108 69
'C14ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 0.84

Table S5277.  Gene #529: 'C14ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C14ORF50 MUTATED 3 1 1 0 1
C14ORF50 WILD-TYPE 85 65 44 55 46
'PKN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0061 (Fisher's exact test), Q value = 0.043

Table S5278.  Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PKN1 MUTATED 1 9 0 0
PKN1 WILD-TYPE 203 128 47 3

Figure S2159.  Get High-res Image Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PKN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.18

Table S5279.  Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PKN1 MUTATED 0 5 0 0 1
PKN1 WILD-TYPE 39 91 44 88 79
'PKN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 0.82

Table S5280.  Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PKN1 MUTATED 1 3 2 1 1
PKN1 WILD-TYPE 25 76 71 81 57
'PKN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00989 (Fisher's exact test), Q value = 0.056

Table S5281.  Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PKN1 MUTATED 2 5 0 1
PKN1 WILD-TYPE 125 46 71 68

Figure S2160.  Get High-res Image Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PKN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.37

Table S5282.  Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PKN1 MUTATED 0 2 4 1 2
PKN1 WILD-TYPE 84 83 81 68 45
'PKN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.62

Table S5283.  Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PKN1 MUTATED 2 1 2 4
PKN1 WILD-TYPE 93 73 119 76
'PKN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.19

Table S5284.  Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PKN1 MUTATED 3 4 0 1 1 1
PKN1 WILD-TYPE 49 60 72 103 39 58
'PKN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S5285.  Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PKN1 MUTATED 8 0 2
PKN1 WILD-TYPE 209 75 97
'PKN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S5286.  Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PKN1 MUTATED 4 1 2
PKN1 WILD-TYPE 117 107 70
'PKN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S5287.  Gene #530: 'PKN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PKN1 MUTATED 2 0 1 1 3
PKN1 WILD-TYPE 86 66 44 54 44
'ASAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.13

Table S5288.  Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ASAP2 MUTATED 5 11 0 0
ASAP2 WILD-TYPE 199 126 47 3

Figure S2161.  Get High-res Image Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ASAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.086

Table S5289.  Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ASAP2 MUTATED 2 7 3 1 0
ASAP2 WILD-TYPE 37 89 41 87 80

Figure S2162.  Get High-res Image Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ASAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.57

Table S5290.  Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ASAP2 MUTATED 0 7 4 3 2
ASAP2 WILD-TYPE 26 72 69 79 56
'ASAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.094

Table S5291.  Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ASAP2 MUTATED 2 6 5 3
ASAP2 WILD-TYPE 125 45 66 66

Figure S2163.  Get High-res Image Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ASAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.41

Table S5292.  Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ASAP2 MUTATED 3 3 6 1 0
ASAP2 WILD-TYPE 81 82 79 68 47
'ASAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5293.  Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ASAP2 MUTATED 3 3 4 3
ASAP2 WILD-TYPE 92 71 117 77
'ASAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 0.43

Table S5294.  Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ASAP2 MUTATED 0 5 4 4 2 1
ASAP2 WILD-TYPE 52 59 68 100 38 58
'ASAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S5295.  Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ASAP2 MUTATED 11 4 1
ASAP2 WILD-TYPE 206 71 98
'ASAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S5296.  Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ASAP2 MUTATED 4 2 5
ASAP2 WILD-TYPE 117 106 67
'ASAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.58

Table S5297.  Gene #531: 'ASAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ASAP2 MUTATED 5 2 2 0 2
ASAP2 WILD-TYPE 83 64 43 55 45
'FAM133A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0493 (Fisher's exact test), Q value = 0.14

Table S5298.  Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM133A MUTATED 1 6 2 0
FAM133A WILD-TYPE 203 131 45 3

Figure S2164.  Get High-res Image Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM133A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.062

Table S5299.  Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM133A MUTATED 0 6 1 0 0
FAM133A WILD-TYPE 39 90 43 88 80

Figure S2165.  Get High-res Image Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM133A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 0.88

Table S5300.  Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM133A MUTATED 1 2 2 1 1
FAM133A WILD-TYPE 25 77 71 81 57
'FAM133A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S5301.  Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM133A MUTATED 2 3 2 0
FAM133A WILD-TYPE 125 48 69 69
'FAM133A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00672 (Fisher's exact test), Q value = 0.045

Table S5302.  Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM133A MUTATED 1 1 7 0 0
FAM133A WILD-TYPE 83 84 78 69 47

Figure S2166.  Get High-res Image Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM133A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0212 (Fisher's exact test), Q value = 0.087

Table S5303.  Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM133A MUTATED 1 1 1 6
FAM133A WILD-TYPE 94 73 120 74

Figure S2167.  Get High-res Image Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM133A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.19

Table S5304.  Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM133A MUTATED 1 3 4 0 0 1
FAM133A WILD-TYPE 51 61 68 104 40 58
'FAM133A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S5305.  Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM133A MUTATED 8 0 1
FAM133A WILD-TYPE 209 75 98
'FAM133A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S5306.  Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM133A MUTATED 3 0 2
FAM133A WILD-TYPE 118 108 70
'FAM133A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.44

Table S5307.  Gene #532: 'FAM133A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM133A MUTATED 2 0 1 0 2
FAM133A WILD-TYPE 86 66 44 55 45
'METTL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.11

Table S5308.  Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
METTL6 MUTATED 0 5 0 0
METTL6 WILD-TYPE 204 132 47 3

Figure S2168.  Get High-res Image Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'METTL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.43

Table S5309.  Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
METTL6 MUTATED 1 2 0 0 0
METTL6 WILD-TYPE 38 94 44 88 80
'METTL6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.53

Table S5310.  Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
METTL6 MUTATED 0 1 2 0 2
METTL6 WILD-TYPE 26 78 71 82 56
'METTL6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0644 (Fisher's exact test), Q value = 0.17

Table S5311.  Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
METTL6 MUTATED 1 3 1 0
METTL6 WILD-TYPE 126 48 70 69
'METTL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S5312.  Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
METTL6 MUTATED 0 0 3 1 1
METTL6 WILD-TYPE 84 85 82 68 46
'METTL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0963 (Fisher's exact test), Q value = 0.21

Table S5313.  Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
METTL6 MUTATED 1 1 0 3
METTL6 WILD-TYPE 94 73 121 77
'METTL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S5314.  Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
METTL6 MUTATED 3 2 0 0 0 0
METTL6 WILD-TYPE 49 62 72 104 40 59

Figure S2169.  Get High-res Image Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'METTL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S5315.  Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
METTL6 MUTATED 4 0 1
METTL6 WILD-TYPE 213 75 98
'METTL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.58

Table S5316.  Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
METTL6 MUTATED 2 0 1
METTL6 WILD-TYPE 119 108 71
'METTL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S5317.  Gene #533: 'METTL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
METTL6 MUTATED 1 0 0 0 2
METTL6 WILD-TYPE 87 66 45 55 45
'EFHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S5318.  Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EFHD1 MUTATED 1 4 1 0
EFHD1 WILD-TYPE 203 133 46 3
'EFHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0744 (Fisher's exact test), Q value = 0.18

Table S5319.  Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EFHD1 MUTATED 0 5 0 0 1
EFHD1 WILD-TYPE 39 91 44 88 79
'EFHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S5320.  Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EFHD1 MUTATED 1 1 3 0 1
EFHD1 WILD-TYPE 25 78 70 82 57
'EFHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.076

Table S5321.  Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EFHD1 MUTATED 1 4 1 0
EFHD1 WILD-TYPE 126 47 70 69

Figure S2170.  Get High-res Image Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EFHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00573 (Fisher's exact test), Q value = 0.042

Table S5322.  Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EFHD1 MUTATED 0 0 5 0 1
EFHD1 WILD-TYPE 84 85 80 69 46

Figure S2171.  Get High-res Image Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EFHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.17

Table S5323.  Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EFHD1 MUTATED 1 0 1 4
EFHD1 WILD-TYPE 94 74 120 76
'EFHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.13

Table S5324.  Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EFHD1 MUTATED 3 2 1 0 0 0
EFHD1 WILD-TYPE 49 62 71 104 40 59

Figure S2172.  Get High-res Image Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EFHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S5325.  Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EFHD1 MUTATED 6 0 0
EFHD1 WILD-TYPE 211 75 99
'EFHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.36

Table S5326.  Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EFHD1 MUTATED 2 0 2
EFHD1 WILD-TYPE 119 108 70
'EFHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0224 (Fisher's exact test), Q value = 0.09

Table S5327.  Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EFHD1 MUTATED 0 0 2 0 2
EFHD1 WILD-TYPE 88 66 43 55 45

Figure S2173.  Get High-res Image Gene #534: 'EFHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.013

Table S5328.  Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
VPS13A MUTATED 9 24 5 0
VPS13A WILD-TYPE 195 113 42 3

Figure S2174.  Get High-res Image Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPS13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.089

Table S5329.  Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
VPS13A MUTATED 3 15 6 4 3
VPS13A WILD-TYPE 36 81 38 84 77

Figure S2175.  Get High-res Image Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'VPS13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.11

Table S5330.  Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
VPS13A MUTATED 2 15 9 3 7
VPS13A WILD-TYPE 24 64 64 79 51

Figure S2176.  Get High-res Image Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'VPS13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S5331.  Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
VPS13A MUTATED 5 19 8 4
VPS13A WILD-TYPE 122 32 63 65

Figure S2177.  Get High-res Image Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S5332.  Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
VPS13A MUTATED 3 3 19 4 6
VPS13A WILD-TYPE 81 82 66 65 41

Figure S2178.  Get High-res Image Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'VPS13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00304 (Fisher's exact test), Q value = 0.029

Table S5333.  Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
VPS13A MUTATED 6 4 8 17
VPS13A WILD-TYPE 89 70 113 63

Figure S2179.  Get High-res Image Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00767 (Fisher's exact test), Q value = 0.049

Table S5334.  Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
VPS13A MUTATED 6 13 9 6 3 1
VPS13A WILD-TYPE 46 51 63 98 37 58

Figure S2180.  Get High-res Image Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0298 (Fisher's exact test), Q value = 0.11

Table S5335.  Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
VPS13A MUTATED 29 4 5
VPS13A WILD-TYPE 188 71 94

Figure S2181.  Get High-res Image Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.024

Table S5336.  Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
VPS13A MUTATED 11 3 13
VPS13A WILD-TYPE 110 105 59

Figure S2182.  Get High-res Image Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'VPS13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.06

Table S5337.  Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
VPS13A MUTATED 7 2 7 2 9
VPS13A WILD-TYPE 81 64 38 53 38

Figure S2183.  Get High-res Image Gene #535: 'VPS13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ANKRD28 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00441 (Fisher's exact test), Q value = 0.036

Table S5338.  Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ANKRD28 MUTATED 2 11 0 0
ANKRD28 WILD-TYPE 202 126 47 3

Figure S2184.  Get High-res Image Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANKRD28 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.13

Table S5339.  Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ANKRD28 MUTATED 0 7 1 0 3
ANKRD28 WILD-TYPE 39 89 43 88 77

Figure S2185.  Get High-res Image Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANKRD28 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.8

Table S5340.  Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ANKRD28 MUTATED 2 2 2 3 2
ANKRD28 WILD-TYPE 24 77 71 79 56
'ANKRD28 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0864 (Fisher's exact test), Q value = 0.2

Table S5341.  Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ANKRD28 MUTATED 3 5 1 2
ANKRD28 WILD-TYPE 124 46 70 67
'ANKRD28 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0404 (Fisher's exact test), Q value = 0.13

Table S5342.  Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ANKRD28 MUTATED 1 4 7 0 1
ANKRD28 WILD-TYPE 83 81 78 69 46

Figure S2186.  Get High-res Image Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ANKRD28 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 0.8

Table S5343.  Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ANKRD28 MUTATED 3 4 3 3
ANKRD28 WILD-TYPE 92 70 118 77
'ANKRD28 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.966 (Fisher's exact test), Q value = 0.99

Table S5344.  Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ANKRD28 MUTATED 2 3 2 4 1 1
ANKRD28 WILD-TYPE 50 61 70 100 39 58
'ANKRD28 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S5345.  Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ANKRD28 MUTATED 6 5 2
ANKRD28 WILD-TYPE 211 70 97
'ANKRD28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 0.84

Table S5346.  Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ANKRD28 MUTATED 3 4 3
ANKRD28 WILD-TYPE 118 104 69
'ANKRD28 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S5347.  Gene #536: 'ANKRD28 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ANKRD28 MUTATED 1 3 3 0 3
ANKRD28 WILD-TYPE 87 63 42 55 44
'OR5M3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S5348.  Gene #537: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OR5M3 MUTATED 7 11 1 0
OR5M3 WILD-TYPE 197 126 46 3
'OR5M3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.41

Table S5349.  Gene #537: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OR5M3 MUTATED 1 9 1 4 2
OR5M3 WILD-TYPE 38 87 43 84 78
'OR5M3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S5350.  Gene #537: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OR5M3 MUTATED 0 6 4 2 1
OR5M3 WILD-TYPE 26 73 69 80 57
'OR5M3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S5351.  Gene #537: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OR5M3 MUTATED 3 4 5 1
OR5M3 WILD-TYPE 124 47 66 68
'OR5M3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.54

Table S5352.  Gene #537: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OR5M3 MUTATED 5 2 7 4 1
OR5M3 WILD-TYPE 79 83 78 65 46
'OR5M3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0705 (Fisher's exact test), Q value = 0.18

Table S5353.  Gene #537: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OR5M3 MUTATED 6 1 4 8
OR5M3 WILD-TYPE 89 73 117 72
'OR5M3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 0.21

Table S5354.  Gene #537: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OR5M3 MUTATED 6 3 2 2 1 5
OR5M3 WILD-TYPE 46 61 70 102 39 54
'OR5M3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.42

Table S5355.  Gene #537: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OR5M3 MUTATED 13 1 5
OR5M3 WILD-TYPE 204 74 94
'OR5M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.42

Table S5356.  Gene #537: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OR5M3 MUTATED 9 3 3
OR5M3 WILD-TYPE 112 105 69
'OR5M3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0658 (Fisher's exact test), Q value = 0.17

Table S5357.  Gene #537: 'OR5M3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OR5M3 MUTATED 4 0 2 4 5
OR5M3 WILD-TYPE 84 66 43 51 42
'EXPH5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00769 (Fisher's exact test), Q value = 0.049

Table S5358.  Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EXPH5 MUTATED 2 11 2 0
EXPH5 WILD-TYPE 202 126 45 3

Figure S2187.  Get High-res Image Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EXPH5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.071

Table S5359.  Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EXPH5 MUTATED 0 9 1 1 1
EXPH5 WILD-TYPE 39 87 43 87 79

Figure S2188.  Get High-res Image Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EXPH5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.19

Table S5360.  Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EXPH5 MUTATED 1 4 6 0 3
EXPH5 WILD-TYPE 25 75 67 82 55
'EXPH5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S5361.  Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EXPH5 MUTATED 3 10 1 0
EXPH5 WILD-TYPE 124 41 70 69

Figure S2189.  Get High-res Image Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EXPH5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.082

Table S5362.  Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EXPH5 MUTATED 1 1 7 1 4
EXPH5 WILD-TYPE 83 84 78 68 43

Figure S2190.  Get High-res Image Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EXPH5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S5363.  Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EXPH5 MUTATED 4 1 3 6
EXPH5 WILD-TYPE 91 73 118 74
'EXPH5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.012

Table S5364.  Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EXPH5 MUTATED 5 7 2 0 0 1
EXPH5 WILD-TYPE 47 57 70 104 40 58

Figure S2191.  Get High-res Image Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EXPH5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0348 (Fisher's exact test), Q value = 0.12

Table S5365.  Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EXPH5 MUTATED 13 0 2
EXPH5 WILD-TYPE 204 75 97

Figure S2192.  Get High-res Image Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EXPH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.071

Table S5366.  Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EXPH5 MUTATED 5 0 5
EXPH5 WILD-TYPE 116 108 67

Figure S2193.  Get High-res Image Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EXPH5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00024 (Fisher's exact test), Q value = 0.0068

Table S5367.  Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EXPH5 MUTATED 0 0 3 1 6
EXPH5 WILD-TYPE 88 66 42 54 41

Figure S2194.  Get High-res Image Gene #538: 'EXPH5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ABCB4 MUTATION STATUS' versus 'CN_CNMF'

P value = 9e-04 (Fisher's exact test), Q value = 0.015

Table S5368.  Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABCB4 MUTATED 4 16 5 0
ABCB4 WILD-TYPE 200 121 42 3

Figure S2195.  Get High-res Image Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCB4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S5369.  Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABCB4 MUTATED 3 11 4 2 1
ABCB4 WILD-TYPE 36 85 40 86 79

Figure S2196.  Get High-res Image Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCB4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S5370.  Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABCB4 MUTATED 1 9 6 3 6
ABCB4 WILD-TYPE 25 70 67 79 52
'ABCB4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00391 (Fisher's exact test), Q value = 0.034

Table S5371.  Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABCB4 MUTATED 6 11 5 3
ABCB4 WILD-TYPE 121 40 66 66

Figure S2197.  Get High-res Image Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABCB4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.1

Table S5372.  Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABCB4 MUTATED 1 4 10 3 5
ABCB4 WILD-TYPE 83 81 75 66 42

Figure S2198.  Get High-res Image Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ABCB4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0192 (Fisher's exact test), Q value = 0.082

Table S5373.  Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABCB4 MUTATED 5 4 3 11
ABCB4 WILD-TYPE 90 70 118 69

Figure S2199.  Get High-res Image Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.21

Table S5374.  Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABCB4 MUTATED 6 8 5 4 2 1
ABCB4 WILD-TYPE 46 56 67 100 38 58
'ABCB4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 0.095

Table S5375.  Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABCB4 MUTATED 21 3 2
ABCB4 WILD-TYPE 196 72 97

Figure S2200.  Get High-res Image Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S5376.  Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABCB4 MUTATED 8 4 8
ABCB4 WILD-TYPE 113 104 64
'ABCB4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S5377.  Gene #539: 'ABCB4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABCB4 MUTATED 7 3 2 1 7
ABCB4 WILD-TYPE 81 63 43 54 40
'HRNR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S5378.  Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HRNR MUTATED 18 15 6 1
HRNR WILD-TYPE 186 122 41 2
'HRNR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S5379.  Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HRNR MUTATED 8 14 4 9 2
HRNR WILD-TYPE 31 82 40 79 78

Figure S2201.  Get High-res Image Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HRNR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S5380.  Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HRNR MUTATED 1 7 9 6 10
HRNR WILD-TYPE 25 72 64 76 48
'HRNR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.48

Table S5381.  Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HRNR MUTATED 12 9 6 6
HRNR WILD-TYPE 115 42 65 63
'HRNR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.11

Table S5382.  Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HRNR MUTATED 6 4 15 9 8
HRNR WILD-TYPE 78 81 70 60 39

Figure S2202.  Get High-res Image Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HRNR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S5383.  Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HRNR MUTATED 13 5 10 14
HRNR WILD-TYPE 82 69 111 66
'HRNR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S5384.  Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HRNR MUTATED 9 9 5 7 4 8
HRNR WILD-TYPE 43 55 67 97 36 51
'HRNR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.32

Table S5385.  Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HRNR MUTATED 29 5 8
HRNR WILD-TYPE 188 70 91
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S5386.  Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HRNR MUTATED 20 9 7
HRNR WILD-TYPE 101 99 65
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0231 (Fisher's exact test), Q value = 0.091

Table S5387.  Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HRNR MUTATED 14 2 4 6 10
HRNR WILD-TYPE 74 64 41 49 37

Figure S2203.  Get High-res Image Gene #540: 'HRNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BAHCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 0.13

Table S5388.  Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BAHCC1 MUTATED 3 9 0 0
BAHCC1 WILD-TYPE 201 128 47 3

Figure S2204.  Get High-res Image Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BAHCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0785 (Fisher's exact test), Q value = 0.19

Table S5389.  Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BAHCC1 MUTATED 0 4 4 1 1
BAHCC1 WILD-TYPE 39 92 40 87 79
'BAHCC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S5390.  Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BAHCC1 MUTATED 2 3 1 0 2
BAHCC1 WILD-TYPE 24 76 72 82 56
'BAHCC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 0.58

Table S5391.  Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BAHCC1 MUTATED 4 2 2 0
BAHCC1 WILD-TYPE 123 49 69 69
'BAHCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 0.61

Table S5392.  Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BAHCC1 MUTATED 1 2 5 2 2
BAHCC1 WILD-TYPE 83 83 80 67 45
'BAHCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00762 (Fisher's exact test), Q value = 0.049

Table S5393.  Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BAHCC1 MUTATED 5 0 1 6
BAHCC1 WILD-TYPE 90 74 120 74

Figure S2205.  Get High-res Image Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BAHCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S5394.  Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BAHCC1 MUTATED 2 5 3 1 0 1
BAHCC1 WILD-TYPE 50 59 69 103 40 58
'BAHCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0382 (Fisher's exact test), Q value = 0.12

Table S5395.  Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BAHCC1 MUTATED 11 0 1
BAHCC1 WILD-TYPE 206 75 98

Figure S2206.  Get High-res Image Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BAHCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S5396.  Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BAHCC1 MUTATED 5 1 4
BAHCC1 WILD-TYPE 116 107 68
'BAHCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S5397.  Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BAHCC1 MUTATED 3 0 3 0 4
BAHCC1 WILD-TYPE 85 66 42 55 43

Figure S2207.  Get High-res Image Gene #541: 'BAHCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C1RL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S5398.  Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C1RL MUTATED 1 3 2 0
C1RL WILD-TYPE 203 134 45 3
'C1RL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.57

Table S5399.  Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C1RL MUTATED 0 3 0 1 0
C1RL WILD-TYPE 39 93 44 87 80
'C1RL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.065

Table S5400.  Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C1RL MUTATED 0 0 1 0 4
C1RL WILD-TYPE 26 79 72 82 54

Figure S2208.  Get High-res Image Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C1RL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00363 (Fisher's exact test), Q value = 0.033

Table S5401.  Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C1RL MUTATED 1 4 0 0
C1RL WILD-TYPE 126 47 71 69

Figure S2209.  Get High-res Image Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C1RL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S5402.  Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C1RL MUTATED 1 1 3 0 1
C1RL WILD-TYPE 83 84 82 69 46
'C1RL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00388 (Fisher's exact test), Q value = 0.034

Table S5403.  Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C1RL MUTATED 0 0 1 5
C1RL WILD-TYPE 95 74 120 75

Figure S2210.  Get High-res Image Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1RL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.33

Table S5404.  Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C1RL MUTATED 1 3 1 0 0 1
C1RL WILD-TYPE 51 61 71 104 40 58
'C1RL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.65

Table S5405.  Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C1RL MUTATED 5 0 1
C1RL WILD-TYPE 212 75 98
'C1RL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S5406.  Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C1RL MUTATED 2 0 2
C1RL WILD-TYPE 119 108 70
'C1RL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S5407.  Gene #542: 'C1RL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C1RL MUTATED 0 0 1 1 2
C1RL WILD-TYPE 88 66 44 54 45
'USP21 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S5408.  Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
USP21 MUTATED 3 8 1 0
USP21 WILD-TYPE 201 129 46 3
'USP21 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S5409.  Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
USP21 MUTATED 2 4 2 1 0
USP21 WILD-TYPE 37 92 42 87 80
'USP21 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S5410.  Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
USP21 MUTATED 0 6 2 1 1
USP21 WILD-TYPE 26 73 71 81 57
'USP21 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S5411.  Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
USP21 MUTATED 2 4 3 1
USP21 WILD-TYPE 125 47 68 68
'USP21 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S5412.  Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
USP21 MUTATED 2 1 7 0 2
USP21 WILD-TYPE 82 84 78 69 45

Figure S2211.  Get High-res Image Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'USP21 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0716 (Fisher's exact test), Q value = 0.18

Table S5413.  Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
USP21 MUTATED 3 2 1 6
USP21 WILD-TYPE 92 72 120 74
'USP21 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00915 (Fisher's exact test), Q value = 0.054

Table S5414.  Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
USP21 MUTATED 4 6 0 2 0 1
USP21 WILD-TYPE 48 58 72 102 40 58

Figure S2212.  Get High-res Image Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP21 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S5415.  Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
USP21 MUTATED 10 1 2
USP21 WILD-TYPE 207 74 97
'USP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 0.11

Table S5416.  Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
USP21 MUTATED 5 0 4
USP21 WILD-TYPE 116 108 68

Figure S2213.  Get High-res Image Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'USP21 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00148 (Fisher's exact test), Q value = 0.02

Table S5417.  Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
USP21 MUTATED 1 0 3 0 5
USP21 WILD-TYPE 87 66 42 55 42

Figure S2214.  Get High-res Image Gene #543: 'USP21 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZBTB38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.02

Table S5418.  Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZBTB38 MUTATED 3 15 2 0
ZBTB38 WILD-TYPE 201 122 45 3

Figure S2215.  Get High-res Image Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZBTB38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0954 (Fisher's exact test), Q value = 0.21

Table S5419.  Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZBTB38 MUTATED 1 9 4 2 2
ZBTB38 WILD-TYPE 38 87 40 86 78
'ZBTB38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S5420.  Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZBTB38 MUTATED 4 4 2 2 3
ZBTB38 WILD-TYPE 22 75 71 80 55
'ZBTB38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.73

Table S5421.  Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZBTB38 MUTATED 6 4 2 3
ZBTB38 WILD-TYPE 121 47 69 66
'ZBTB38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.514 (Fisher's exact test), Q value = 0.62

Table S5422.  Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZBTB38 MUTATED 2 4 7 3 3
ZBTB38 WILD-TYPE 82 81 78 66 44
'ZBTB38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S5423.  Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZBTB38 MUTATED 8 4 2 5
ZBTB38 WILD-TYPE 87 70 119 75
'ZBTB38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S5424.  Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZBTB38 MUTATED 4 7 4 2 1 2
ZBTB38 WILD-TYPE 48 57 68 102 39 57
'ZBTB38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S5425.  Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZBTB38 MUTATED 15 2 3
ZBTB38 WILD-TYPE 202 73 96
'ZBTB38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.066

Table S5426.  Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZBTB38 MUTATED 8 1 7
ZBTB38 WILD-TYPE 113 107 65

Figure S2216.  Get High-res Image Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZBTB38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00142 (Fisher's exact test), Q value = 0.019

Table S5427.  Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZBTB38 MUTATED 3 1 5 0 7
ZBTB38 WILD-TYPE 85 65 40 55 40

Figure S2217.  Get High-res Image Gene #544: 'ZBTB38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CBLN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0573 (Fisher's exact test), Q value = 0.16

Table S5428.  Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CBLN3 MUTATED 1 6 0 0
CBLN3 WILD-TYPE 203 131 47 3
'CBLN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.17

Table S5429.  Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CBLN3 MUTATED 1 4 0 0 0
CBLN3 WILD-TYPE 38 92 44 88 80
'CBLN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S5430.  Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CBLN3 MUTATED 2 1 2 0 1
CBLN3 WILD-TYPE 24 78 71 82 57
'CBLN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0792 (Fisher's exact test), Q value = 0.19

Table S5431.  Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CBLN3 MUTATED 3 3 0 0
CBLN3 WILD-TYPE 124 48 71 69
'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S5432.  Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CBLN3 MUTATED 1 0 2 2 2
CBLN3 WILD-TYPE 83 85 83 67 45
'CBLN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.075

Table S5433.  Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CBLN3 MUTATED 3 0 0 4
CBLN3 WILD-TYPE 92 74 121 76

Figure S2218.  Get High-res Image Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S5434.  Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CBLN3 MUTATED 3 2 1 0 0 1
CBLN3 WILD-TYPE 49 62 71 104 40 58
'CBLN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S5435.  Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CBLN3 MUTATED 6 0 1
CBLN3 WILD-TYPE 211 75 98
'CBLN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S5436.  Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CBLN3 MUTATED 4 0 1
CBLN3 WILD-TYPE 117 108 71
'CBLN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0688 (Fisher's exact test), Q value = 0.17

Table S5437.  Gene #545: 'CBLN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CBLN3 MUTATED 1 0 1 0 3
CBLN3 WILD-TYPE 87 66 44 55 44
'AXIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0305 (Fisher's exact test), Q value = 0.11

Table S5438.  Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AXIN2 MUTATED 5 13 2 0
AXIN2 WILD-TYPE 199 124 45 3

Figure S2219.  Get High-res Image Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AXIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0643 (Fisher's exact test), Q value = 0.17

Table S5439.  Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AXIN2 MUTATED 0 10 2 2 3
AXIN2 WILD-TYPE 39 86 42 86 77
'AXIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5440.  Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AXIN2 MUTATED 1 4 3 4 3
AXIN2 WILD-TYPE 25 75 70 78 55
'AXIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.35

Table S5441.  Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AXIN2 MUTATED 4 5 2 4
AXIN2 WILD-TYPE 123 46 69 65
'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.085

Table S5442.  Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AXIN2 MUTATED 2 5 9 0 3
AXIN2 WILD-TYPE 82 80 76 69 44

Figure S2220.  Get High-res Image Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AXIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.38

Table S5443.  Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AXIN2 MUTATED 5 4 3 7
AXIN2 WILD-TYPE 90 70 118 73
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.59

Table S5444.  Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AXIN2 MUTATED 4 5 2 3 3 3
AXIN2 WILD-TYPE 48 59 70 101 37 56
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5445.  Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AXIN2 MUTATED 11 4 5
AXIN2 WILD-TYPE 206 71 94
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5446.  Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AXIN2 MUTATED 7 6 4
AXIN2 WILD-TYPE 114 102 68
'AXIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.6

Table S5447.  Gene #546: 'AXIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AXIN2 MUTATED 6 2 2 2 5
AXIN2 WILD-TYPE 82 64 43 53 42
'CFI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.42

Table S5448.  Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CFI MUTATED 4 7 2 0
CFI WILD-TYPE 200 130 45 3
'CFI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.57

Table S5449.  Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CFI MUTATED 1 5 1 1 1
CFI WILD-TYPE 38 91 43 87 79
'CFI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.87

Table S5450.  Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CFI MUTATED 0 4 3 2 3
CFI WILD-TYPE 26 75 70 80 55
'CFI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S5451.  Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CFI MUTATED 4 5 2 1
CFI WILD-TYPE 123 46 69 68
'CFI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00657 (Fisher's exact test), Q value = 0.045

Table S5452.  Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CFI MUTATED 1 1 9 1 1
CFI WILD-TYPE 83 84 76 68 46

Figure S2221.  Get High-res Image Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CFI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0334 (Fisher's exact test), Q value = 0.11

Table S5453.  Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CFI MUTATED 5 1 1 6
CFI WILD-TYPE 90 73 120 74

Figure S2222.  Get High-res Image Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CFI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.13

Table S5454.  Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CFI MUTATED 4 5 1 3 0 0
CFI WILD-TYPE 48 59 71 101 40 59

Figure S2223.  Get High-res Image Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CFI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S5455.  Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CFI MUTATED 11 1 1
CFI WILD-TYPE 206 74 98
'CFI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5456.  Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CFI MUTATED 3 2 2
CFI WILD-TYPE 118 106 70
'CFI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.593 (Fisher's exact test), Q value = 0.69

Table S5457.  Gene #547: 'CFI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CFI MUTATED 1 1 2 1 2
CFI WILD-TYPE 87 65 43 54 45
'UNC50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S5458.  Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UNC50 MUTATED 0 3 0 0
UNC50 WILD-TYPE 204 134 47 3
'UNC50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.31

Table S5459.  Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UNC50 MUTATED 0 3 0 0 0
UNC50 WILD-TYPE 39 93 44 88 80
'UNC50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 0.67

Table S5460.  Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UNC50 MUTATED 0 2 1 0 0
UNC50 WILD-TYPE 26 77 72 82 58
'UNC50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.75

Table S5461.  Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UNC50 MUTATED 1 1 1 0
UNC50 WILD-TYPE 126 50 70 69
'UNC50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0382 (Fisher's exact test), Q value = 0.12

Table S5462.  Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UNC50 MUTATED 0 0 2 0 2
UNC50 WILD-TYPE 84 85 83 69 45

Figure S2224.  Get High-res Image Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UNC50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.13

Table S5463.  Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UNC50 MUTATED 1 0 0 3
UNC50 WILD-TYPE 94 74 121 77

Figure S2225.  Get High-res Image Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UNC50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S5464.  Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UNC50 MUTATED 2 1 1 0 0 0
UNC50 WILD-TYPE 50 63 71 104 40 59
'UNC50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S5465.  Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UNC50 MUTATED 4 0 0
UNC50 WILD-TYPE 213 75 99
'UNC50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.57

Table S5466.  Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
UNC50 MUTATED 2 0 1
UNC50 WILD-TYPE 119 108 71
'UNC50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S5467.  Gene #548: 'UNC50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
UNC50 MUTATED 1 0 0 0 2
UNC50 WILD-TYPE 87 66 45 55 45
'TH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.007 (Fisher's exact test), Q value = 0.046

Table S5468.  Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TH1L MUTATED 1 9 1 0
TH1L WILD-TYPE 203 128 46 3

Figure S2226.  Get High-res Image Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.76

Table S5469.  Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TH1L MUTATED 1 2 2 1 3
TH1L WILD-TYPE 38 94 42 87 77
'TH1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.72

Table S5470.  Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TH1L MUTATED 1 3 1 1 2
TH1L WILD-TYPE 25 76 72 81 56
'TH1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0948 (Fisher's exact test), Q value = 0.21

Table S5471.  Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TH1L MUTATED 2 3 3 0
TH1L WILD-TYPE 125 48 68 69
'TH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00765 (Fisher's exact test), Q value = 0.049

Table S5472.  Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TH1L MUTATED 0 1 7 2 0
TH1L WILD-TYPE 84 84 78 67 47

Figure S2227.  Get High-res Image Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.88

Table S5473.  Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TH1L MUTATED 2 1 4 3
TH1L WILD-TYPE 93 73 117 77
'TH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.1

Table S5474.  Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TH1L MUTATED 2 4 4 0 1 0
TH1L WILD-TYPE 50 60 68 104 39 59

Figure S2228.  Get High-res Image Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S5475.  Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TH1L MUTATED 9 1 1
TH1L WILD-TYPE 208 74 98
'TH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S5476.  Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TH1L MUTATED 3 0 3
TH1L WILD-TYPE 118 108 69
'TH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S5477.  Gene #549: 'TH1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TH1L MUTATED 2 0 2 0 2
TH1L WILD-TYPE 86 66 43 55 45
'HEXDC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.18

Table S5478.  Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HEXDC MUTATED 1 6 1 0
HEXDC WILD-TYPE 203 131 46 3
'HEXDC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0423 (Fisher's exact test), Q value = 0.13

Table S5479.  Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HEXDC MUTATED 1 5 1 0 0
HEXDC WILD-TYPE 38 91 43 88 80

Figure S2229.  Get High-res Image Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HEXDC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.068

Table S5480.  Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HEXDC MUTATED 1 0 5 0 2
HEXDC WILD-TYPE 25 79 68 82 56

Figure S2230.  Get High-res Image Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HEXDC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0498 (Fisher's exact test), Q value = 0.14

Table S5481.  Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HEXDC MUTATED 5 3 0 0
HEXDC WILD-TYPE 122 48 71 69

Figure S2231.  Get High-res Image Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HEXDC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S5482.  Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HEXDC MUTATED 0 1 3 3 1
HEXDC WILD-TYPE 84 84 82 66 46
'HEXDC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.069 (Fisher's exact test), Q value = 0.17

Table S5483.  Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HEXDC MUTATED 4 1 0 3
HEXDC WILD-TYPE 91 73 121 77
'HEXDC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S5484.  Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HEXDC MUTATED 2 2 0 3 1 0
HEXDC WILD-TYPE 50 62 72 101 39 59
'HEXDC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S5485.  Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HEXDC MUTATED 7 1 0
HEXDC WILD-TYPE 210 74 99
'HEXDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.68

Table S5486.  Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HEXDC MUTATED 4 1 1
HEXDC WILD-TYPE 117 107 71
'HEXDC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 0.84

Table S5487.  Gene #550: 'HEXDC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HEXDC MUTATED 3 1 1 0 1
HEXDC WILD-TYPE 85 65 44 55 46
'SOS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0021 (Fisher's exact test), Q value = 0.024

Table S5488.  Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SOS2 MUTATED 3 14 1 0
SOS2 WILD-TYPE 201 123 46 3

Figure S2232.  Get High-res Image Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.43

Table S5489.  Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SOS2 MUTATED 1 8 2 2 2
SOS2 WILD-TYPE 38 88 42 86 78
'SOS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 0.92

Table S5490.  Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SOS2 MUTATED 2 4 4 3 2
SOS2 WILD-TYPE 24 75 69 79 56
'SOS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.37

Table S5491.  Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SOS2 MUTATED 4 5 4 2
SOS2 WILD-TYPE 123 46 67 67
'SOS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.12

Table S5492.  Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SOS2 MUTATED 1 4 9 1 3
SOS2 WILD-TYPE 83 81 76 68 44

Figure S2233.  Get High-res Image Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SOS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00448 (Fisher's exact test), Q value = 0.036

Table S5493.  Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SOS2 MUTATED 6 2 1 9
SOS2 WILD-TYPE 89 72 120 71

Figure S2234.  Get High-res Image Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SOS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.59

Table S5494.  Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SOS2 MUTATED 2 5 5 4 0 2
SOS2 WILD-TYPE 50 59 67 100 40 57
'SOS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S5495.  Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SOS2 MUTATED 14 2 2
SOS2 WILD-TYPE 203 73 97
'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S5496.  Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SOS2 MUTATED 6 2 3
SOS2 WILD-TYPE 115 106 69
'SOS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S5497.  Gene #551: 'SOS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SOS2 MUTATED 4 1 2 0 4
SOS2 WILD-TYPE 84 65 43 55 43
'SPOCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00166 (Fisher's exact test), Q value = 0.021

Table S5498.  Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SPOCD1 MUTATED 1 11 1 0
SPOCD1 WILD-TYPE 203 126 46 3

Figure S2235.  Get High-res Image Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPOCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S5499.  Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SPOCD1 MUTATED 1 5 1 0 3
SPOCD1 WILD-TYPE 38 91 43 88 77
'SPOCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 0.21

Table S5500.  Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SPOCD1 MUTATED 2 4 3 0 1
SPOCD1 WILD-TYPE 24 75 70 82 57
'SPOCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S5501.  Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SPOCD1 MUTATED 4 4 2 0
SPOCD1 WILD-TYPE 123 47 69 69
'SPOCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.42

Table S5502.  Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SPOCD1 MUTATED 0 4 3 2 2
SPOCD1 WILD-TYPE 84 81 82 67 45
'SPOCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.41

Table S5503.  Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SPOCD1 MUTATED 3 3 1 4
SPOCD1 WILD-TYPE 92 71 120 76
'SPOCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S5504.  Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SPOCD1 MUTATED 2 4 2 2 3 0
SPOCD1 WILD-TYPE 50 60 70 102 37 59
'SPOCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S5505.  Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SPOCD1 MUTATED 10 2 1
SPOCD1 WILD-TYPE 207 73 98
'SPOCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5506.  Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SPOCD1 MUTATED 4 3 2
SPOCD1 WILD-TYPE 117 105 70
'SPOCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S5507.  Gene #552: 'SPOCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SPOCD1 MUTATED 2 3 1 0 3
SPOCD1 WILD-TYPE 86 63 44 55 44
'STX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S5508.  Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
STX2 MUTATED 0 6 0 0
STX2 WILD-TYPE 204 131 47 3

Figure S2236.  Get High-res Image Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'STX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.095

Table S5509.  Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
STX2 MUTATED 1 5 0 0 0
STX2 WILD-TYPE 38 91 44 88 80

Figure S2237.  Get High-res Image Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.54

Table S5510.  Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
STX2 MUTATED 0 0 2 1 2
STX2 WILD-TYPE 26 79 71 81 56
'STX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00168 (Fisher's exact test), Q value = 0.021

Table S5511.  Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
STX2 MUTATED 0 4 0 1
STX2 WILD-TYPE 127 47 71 68

Figure S2238.  Get High-res Image Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S5512.  Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
STX2 MUTATED 0 1 4 1 0
STX2 WILD-TYPE 84 84 81 68 47
'STX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0928 (Fisher's exact test), Q value = 0.21

Table S5513.  Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
STX2 MUTATED 1 2 0 3
STX2 WILD-TYPE 94 72 121 77
'STX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S5514.  Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
STX2 MUTATED 3 0 1 1 1 0
STX2 WILD-TYPE 49 64 71 103 39 59
'STX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.35

Table S5515.  Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
STX2 MUTATED 4 2 0
STX2 WILD-TYPE 213 73 99
'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S5516.  Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
STX2 MUTATED 4 1 1
STX2 WILD-TYPE 117 107 71
'STX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S5517.  Gene #553: 'STX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
STX2 MUTATED 2 1 0 0 3
STX2 WILD-TYPE 86 65 45 55 44
'SMAD7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.28

Table S5518.  Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SMAD7 MUTATED 1 5 1 0
SMAD7 WILD-TYPE 203 132 46 3
'SMAD7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.61

Table S5519.  Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SMAD7 MUTATED 0 3 1 1 0
SMAD7 WILD-TYPE 39 93 43 87 80
'SMAD7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.84

Table S5520.  Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SMAD7 MUTATED 0 3 1 1 1
SMAD7 WILD-TYPE 26 76 72 81 57
'SMAD7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 0.12

Table S5521.  Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SMAD7 MUTATED 0 2 3 1
SMAD7 WILD-TYPE 127 49 68 68

Figure S2239.  Get High-res Image Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SMAD7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S5522.  Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SMAD7 MUTATED 1 3 1 1 1
SMAD7 WILD-TYPE 83 82 84 68 46
'SMAD7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S5523.  Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SMAD7 MUTATED 1 2 1 3
SMAD7 WILD-TYPE 94 72 120 77
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 0.91

Table S5524.  Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SMAD7 MUTATED 1 2 2 1 0 1
SMAD7 WILD-TYPE 51 62 70 103 40 58
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S5525.  Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SMAD7 MUTATED 6 0 1
SMAD7 WILD-TYPE 211 75 98
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 0.89

Table S5526.  Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SMAD7 MUTATED 3 1 1
SMAD7 WILD-TYPE 118 107 71
'SMAD7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0624 (Fisher's exact test), Q value = 0.16

Table S5527.  Gene #554: 'SMAD7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SMAD7 MUTATED 2 0 0 0 3
SMAD7 WILD-TYPE 86 66 45 55 44
'GNPNAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.63

Table S5528.  Gene #555: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GNPNAT1 MUTATED 2 3 1 0
GNPNAT1 WILD-TYPE 202 134 46 3
'GNPNAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 0.96

Table S5529.  Gene #555: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GNPNAT1 MUTATED 0 1 1 2 1
GNPNAT1 WILD-TYPE 39 95 43 86 79
'GNPNAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 0.87

Table S5530.  Gene #555: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GNPNAT1 MUTATED 1 1 1 1 1
GNPNAT1 WILD-TYPE 25 78 72 81 57
'GNPNAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S5531.  Gene #555: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GNPNAT1 MUTATED 1 1 1 2
GNPNAT1 WILD-TYPE 126 50 70 67
'GNPNAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.79

Table S5532.  Gene #555: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GNPNAT1 MUTATED 0 1 2 1 1
GNPNAT1 WILD-TYPE 84 84 83 68 46
'GNPNAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.73

Table S5533.  Gene #555: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GNPNAT1 MUTATED 1 0 2 2
GNPNAT1 WILD-TYPE 94 74 119 78
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.65

Table S5534.  Gene #555: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GNPNAT1 MUTATED 1 2 0 2 1 0
GNPNAT1 WILD-TYPE 51 62 72 102 39 59
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.52

Table S5535.  Gene #555: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GNPNAT1 MUTATED 5 1 0
GNPNAT1 WILD-TYPE 212 74 99
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S5536.  Gene #555: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GNPNAT1 MUTATED 2 1 2
GNPNAT1 WILD-TYPE 119 107 70
'GNPNAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.61 (Fisher's exact test), Q value = 0.7

Table S5537.  Gene #555: 'GNPNAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GNPNAT1 MUTATED 3 1 1 0 0
GNPNAT1 WILD-TYPE 85 65 44 55 47
'ALDH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00033 (Fisher's exact test), Q value = 0.0081

Table S5538.  Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ALDH2 MUTATED 1 12 0 0
ALDH2 WILD-TYPE 203 125 47 3

Figure S2240.  Get High-res Image Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALDH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00674 (Fisher's exact test), Q value = 0.045

Table S5539.  Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ALDH2 MUTATED 0 8 1 0 1
ALDH2 WILD-TYPE 39 88 43 88 79

Figure S2241.  Get High-res Image Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALDH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.18

Table S5540.  Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ALDH2 MUTATED 2 2 3 0 4
ALDH2 WILD-TYPE 24 77 70 82 54
'ALDH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00107 (Fisher's exact test), Q value = 0.016

Table S5541.  Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ALDH2 MUTATED 3 7 1 0
ALDH2 WILD-TYPE 124 44 70 69

Figure S2242.  Get High-res Image Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.083

Table S5542.  Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ALDH2 MUTATED 0 1 7 2 2
ALDH2 WILD-TYPE 84 84 78 67 45

Figure S2243.  Get High-res Image Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALDH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.0078

Table S5543.  Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ALDH2 MUTATED 2 0 1 9
ALDH2 WILD-TYPE 93 74 120 71

Figure S2244.  Get High-res Image Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S5544.  Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ALDH2 MUTATED 3 6 3 1 0 0
ALDH2 WILD-TYPE 49 58 69 103 40 59

Figure S2245.  Get High-res Image Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.086

Table S5545.  Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ALDH2 MUTATED 12 0 1
ALDH2 WILD-TYPE 205 75 98

Figure S2246.  Get High-res Image Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S5546.  Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ALDH2 MUTATED 6 1 2
ALDH2 WILD-TYPE 115 107 70
'ALDH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0895 (Fisher's exact test), Q value = 0.2

Table S5547.  Gene #556: 'ALDH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ALDH2 MUTATED 4 0 2 0 3
ALDH2 WILD-TYPE 84 66 43 55 44
'TMEM55A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.79

Table S5548.  Gene #557: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMEM55A MUTATED 1 2 0 0
TMEM55A WILD-TYPE 203 135 47 3
'TMEM55A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S5549.  Gene #557: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMEM55A MUTATED 0 1 1 0 1
TMEM55A WILD-TYPE 26 78 72 82 57
'TMEM55A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S5550.  Gene #557: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMEM55A MUTATED 1 2 0 0
TMEM55A WILD-TYPE 126 49 71 69
'TMEM55A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.72

Table S5551.  Gene #557: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMEM55A MUTATED 0 1 2 0 0
TMEM55A WILD-TYPE 84 84 83 69 47
'TMEM55A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.2

Table S5552.  Gene #557: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMEM55A MUTATED 0 1 0 2
TMEM55A WILD-TYPE 95 73 121 78
'TMEM55A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5553.  Gene #557: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMEM55A MUTATED 0 1 1 1 0 0
TMEM55A WILD-TYPE 52 63 71 103 40 59
'TMEM55A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 0.83

Table S5554.  Gene #557: 'TMEM55A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMEM55A MUTATED 2 1 0
TMEM55A WILD-TYPE 215 74 99
'SPATA5L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S5555.  Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SPATA5L1 MUTATED 1 5 0 0
SPATA5L1 WILD-TYPE 203 132 47 3
'SPATA5L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00217 (Fisher's exact test), Q value = 0.024

Table S5556.  Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SPATA5L1 MUTATED 1 1 4 0 0
SPATA5L1 WILD-TYPE 38 95 40 88 80

Figure S2247.  Get High-res Image Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SPATA5L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.77

Table S5557.  Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SPATA5L1 MUTATED 0 2 1 0 1
SPATA5L1 WILD-TYPE 26 77 72 82 57
'SPATA5L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0472 (Fisher's exact test), Q value = 0.14

Table S5558.  Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SPATA5L1 MUTATED 0 2 2 0
SPATA5L1 WILD-TYPE 127 49 69 69

Figure S2248.  Get High-res Image Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SPATA5L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0589 (Fisher's exact test), Q value = 0.16

Table S5559.  Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SPATA5L1 MUTATED 0 1 4 0 0
SPATA5L1 WILD-TYPE 84 84 81 69 47
'SPATA5L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S5560.  Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SPATA5L1 MUTATED 0 1 1 3
SPATA5L1 WILD-TYPE 95 73 120 77
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S5561.  Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SPATA5L1 MUTATED 1 2 1 2 0 0
SPATA5L1 WILD-TYPE 51 62 71 102 40 59
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S5562.  Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SPATA5L1 MUTATED 4 2 0
SPATA5L1 WILD-TYPE 213 73 99
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.8

Table S5563.  Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SPATA5L1 MUTATED 2 1 2
SPATA5L1 WILD-TYPE 119 107 70
'SPATA5L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 0.74

Table S5564.  Gene #558: 'SPATA5L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SPATA5L1 MUTATED 2 2 1 0 0
SPATA5L1 WILD-TYPE 86 64 44 55 47
'CDC42EP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5565.  Gene #559: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDC42EP1 MUTATED 2 2 0 0
CDC42EP1 WILD-TYPE 202 135 47 3
'CDC42EP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0697 (Fisher's exact test), Q value = 0.17

Table S5566.  Gene #559: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDC42EP1 MUTATED 0 4 0 0 0
CDC42EP1 WILD-TYPE 39 92 44 88 80
'CDC42EP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S5567.  Gene #559: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDC42EP1 MUTATED 0 1 3 0 0
CDC42EP1 WILD-TYPE 26 78 70 82 58
'CDC42EP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00794 (Fisher's exact test), Q value = 0.05

Table S5568.  Gene #559: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDC42EP1 MUTATED 0 3 0 1
CDC42EP1 WILD-TYPE 127 48 71 68

Figure S2249.  Get High-res Image Gene #559: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDC42EP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S5569.  Gene #559: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDC42EP1 MUTATED 0 1 3 0 0
CDC42EP1 WILD-TYPE 84 84 82 69 47
'CDC42EP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.089

Table S5570.  Gene #559: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDC42EP1 MUTATED 0 1 0 3
CDC42EP1 WILD-TYPE 95 73 121 77

Figure S2250.  Get High-res Image Gene #559: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC42EP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.21

Table S5571.  Gene #559: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDC42EP1 MUTATED 2 0 1 0 1 0
CDC42EP1 WILD-TYPE 50 64 71 104 39 59
'CDC42EP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.62

Table S5572.  Gene #559: 'CDC42EP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDC42EP1 MUTATED 2 0 2
CDC42EP1 WILD-TYPE 215 75 97
'SPATA20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.14

Table S5573.  Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SPATA20 MUTATED 4 11 2 0
SPATA20 WILD-TYPE 200 126 45 3

Figure S2251.  Get High-res Image Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPATA20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.37

Table S5574.  Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SPATA20 MUTATED 1 8 0 3 3
SPATA20 WILD-TYPE 38 88 44 85 77
'SPATA20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 0.37

Table S5575.  Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SPATA20 MUTATED 0 2 5 2 5
SPATA20 WILD-TYPE 26 77 68 80 53
'SPATA20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0637 (Fisher's exact test), Q value = 0.17

Table S5576.  Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SPATA20 MUTATED 3 6 2 3
SPATA20 WILD-TYPE 124 45 69 66
'SPATA20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S5577.  Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SPATA20 MUTATED 2 5 7 1 2
SPATA20 WILD-TYPE 82 80 78 68 45
'SPATA20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S5578.  Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SPATA20 MUTATED 3 5 3 6
SPATA20 WILD-TYPE 92 69 118 74
'SPATA20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S5579.  Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SPATA20 MUTATED 4 2 3 6 0 2
SPATA20 WILD-TYPE 48 62 69 98 40 57
'SPATA20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 0.85

Table S5580.  Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SPATA20 MUTATED 10 2 5
SPATA20 WILD-TYPE 207 73 94
'SPATA20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S5581.  Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SPATA20 MUTATED 3 7 4
SPATA20 WILD-TYPE 118 101 68
'SPATA20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.727 (Fisher's exact test), Q value = 0.8

Table S5582.  Gene #560: 'SPATA20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SPATA20 MUTATED 3 3 1 4 3
SPATA20 WILD-TYPE 85 63 44 51 44
'KIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0039 (Fisher's exact test), Q value = 0.034

Table S5583.  Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIN MUTATED 0 7 0 0
KIN WILD-TYPE 204 130 47 3

Figure S2252.  Get High-res Image Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0535 (Fisher's exact test), Q value = 0.15

Table S5584.  Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIN MUTATED 1 4 2 0 0
KIN WILD-TYPE 38 92 42 88 80
'KIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.6

Table S5585.  Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIN MUTATED 0 2 2 0 2
KIN WILD-TYPE 26 77 71 82 56
'KIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.419 (Fisher's exact test), Q value = 0.54

Table S5586.  Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIN MUTATED 1 2 2 1
KIN WILD-TYPE 126 49 69 68
'KIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S5587.  Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIN MUTATED 0 2 4 1 0
KIN WILD-TYPE 84 83 81 68 47
'KIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0554 (Fisher's exact test), Q value = 0.15

Table S5588.  Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIN MUTATED 2 1 0 4
KIN WILD-TYPE 93 73 121 76
'KIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.16

Table S5589.  Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIN MUTATED 3 2 1 0 1 0
KIN WILD-TYPE 49 62 71 104 39 59
'KIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S5590.  Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIN MUTATED 6 0 1
KIN WILD-TYPE 211 75 98
'KIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S5591.  Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIN MUTATED 4 0 2
KIN WILD-TYPE 117 108 70
'KIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S5592.  Gene #561: 'KIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIN MUTATED 3 0 2 0 1
KIN WILD-TYPE 85 66 43 55 46
'TMEM87B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.11

Table S5593.  Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMEM87B MUTATED 0 5 0 0
TMEM87B WILD-TYPE 204 132 47 3

Figure S2253.  Get High-res Image Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM87B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.46

Table S5594.  Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TMEM87B MUTATED 0 3 0 0 1
TMEM87B WILD-TYPE 39 93 44 88 79
'TMEM87B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S5595.  Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMEM87B MUTATED 1 1 3 0 0
TMEM87B WILD-TYPE 25 78 70 82 58
'TMEM87B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0489 (Fisher's exact test), Q value = 0.14

Table S5596.  Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMEM87B MUTATED 2 3 0 0
TMEM87B WILD-TYPE 125 48 71 69

Figure S2254.  Get High-res Image Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TMEM87B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0727 (Fisher's exact test), Q value = 0.18

Table S5597.  Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMEM87B MUTATED 0 0 3 0 1
TMEM87B WILD-TYPE 84 85 82 69 46
'TMEM87B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.2

Table S5598.  Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMEM87B MUTATED 0 0 1 3
TMEM87B WILD-TYPE 95 74 120 77
'TMEM87B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S5599.  Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMEM87B MUTATED 2 2 0 1 0 0
TMEM87B WILD-TYPE 50 62 72 103 40 59
'TMEM87B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.38

Table S5600.  Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMEM87B MUTATED 5 0 0
TMEM87B WILD-TYPE 212 75 99
'TMEM87B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.42

Table S5601.  Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TMEM87B MUTATED 3 0 1
TMEM87B WILD-TYPE 118 108 71
'TMEM87B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.36

Table S5602.  Gene #562: 'TMEM87B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TMEM87B MUTATED 1 0 1 0 2
TMEM87B WILD-TYPE 87 66 44 55 45
'SP100 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S5603.  Gene #563: 'SP100 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SP100 MUTATED 7 6 4 0
SP100 WILD-TYPE 197 131 43 3
'SP100 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S5604.  Gene #563: 'SP100 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SP100 MUTATED 3 6 3 4 1
SP100 WILD-TYPE 36 90 41 84 79
'SP100 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 0.43

Table S5605.  Gene #563: 'SP100 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SP100 MUTATED 1 6 5 1 3
SP100 WILD-TYPE 25 73 68 81 55
'SP100 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.077 (Fisher's exact test), Q value = 0.19

Table S5606.  Gene #563: 'SP100 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SP100 MUTATED 3 5 6 2
SP100 WILD-TYPE 124 46 65 67
'SP100 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.21

Table S5607.  Gene #563: 'SP100 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SP100 MUTATED 2 2 7 5 0
SP100 WILD-TYPE 82 83 78 64 47
'SP100 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 0.95

Table S5608.  Gene #563: 'SP100 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SP100 MUTATED 5 3 4 4
SP100 WILD-TYPE 90 71 117 76
'SP100 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S5609.  Gene #563: 'SP100 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SP100 MUTATED 4 4 4 2 2 2
SP100 WILD-TYPE 48 60 68 102 38 57
'SP100 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S5610.  Gene #563: 'SP100 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SP100 MUTATED 14 1 3
SP100 WILD-TYPE 203 74 96
'SP100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S5611.  Gene #563: 'SP100 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SP100 MUTATED 7 2 6
SP100 WILD-TYPE 114 106 66
'SP100 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.44

Table S5612.  Gene #563: 'SP100 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SP100 MUTATED 4 1 4 2 4
SP100 WILD-TYPE 84 65 41 53 43
'SOAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.0079

Table S5613.  Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SOAT1 MUTATED 0 10 0 0
SOAT1 WILD-TYPE 204 127 47 3

Figure S2255.  Get High-res Image Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SOAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0465 (Fisher's exact test), Q value = 0.14

Table S5614.  Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SOAT1 MUTATED 0 6 1 0 1
SOAT1 WILD-TYPE 39 90 43 88 79

Figure S2256.  Get High-res Image Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SOAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S5615.  Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SOAT1 MUTATED 1 3 3 0 2
SOAT1 WILD-TYPE 25 76 70 82 56
'SOAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.18

Table S5616.  Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SOAT1 MUTATED 3 4 2 0
SOAT1 WILD-TYPE 124 47 69 69
'SOAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 0.2

Table S5617.  Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SOAT1 MUTATED 1 0 4 2 3
SOAT1 WILD-TYPE 83 85 81 67 44
'SOAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.063

Table S5618.  Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SOAT1 MUTATED 3 0 1 6
SOAT1 WILD-TYPE 92 74 120 74

Figure S2257.  Get High-res Image Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SOAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S5619.  Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SOAT1 MUTATED 3 1 4 1 0 1
SOAT1 WILD-TYPE 49 63 68 103 40 58
'SOAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0901 (Fisher's exact test), Q value = 0.2

Table S5620.  Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SOAT1 MUTATED 9 0 1
SOAT1 WILD-TYPE 208 75 98
'SOAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.17

Table S5621.  Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SOAT1 MUTATED 6 1 0
SOAT1 WILD-TYPE 115 107 72
'SOAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0501 (Fisher's exact test), Q value = 0.14

Table S5622.  Gene #564: 'SOAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SOAT1 MUTATED 4 0 0 0 3
SOAT1 WILD-TYPE 84 66 45 55 44
'IL7R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S5623.  Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IL7R MUTATED 4 9 1 0
IL7R WILD-TYPE 200 128 46 3
'IL7R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.32

Table S5624.  Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IL7R MUTATED 1 6 1 3 0
IL7R WILD-TYPE 38 90 43 85 80
'IL7R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S5625.  Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IL7R MUTATED 0 5 4 1 3
IL7R WILD-TYPE 26 74 69 81 55
'IL7R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00431 (Fisher's exact test), Q value = 0.035

Table S5626.  Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IL7R MUTATED 2 7 3 1
IL7R WILD-TYPE 125 44 68 68

Figure S2258.  Get High-res Image Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IL7R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0079 (Fisher's exact test), Q value = 0.049

Table S5627.  Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IL7R MUTATED 4 0 7 0 2
IL7R WILD-TYPE 80 85 78 69 45

Figure S2259.  Get High-res Image Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IL7R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S5628.  Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IL7R MUTATED 1 1 5 6
IL7R WILD-TYPE 94 73 116 74
'IL7R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S5629.  Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IL7R MUTATED 3 4 3 1 0 3
IL7R WILD-TYPE 49 60 69 103 40 56
'IL7R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S5630.  Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IL7R MUTATED 11 0 3
IL7R WILD-TYPE 206 75 96
'IL7R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S5631.  Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IL7R MUTATED 5 2 3
IL7R WILD-TYPE 116 106 69
'IL7R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S5632.  Gene #565: 'IL7R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IL7R MUTATED 3 0 2 1 4
IL7R WILD-TYPE 85 66 43 54 43
'KRT222 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.091

Table S5633.  Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KRT222 MUTATED 1 7 0 0
KRT222 WILD-TYPE 203 130 47 3

Figure S2260.  Get High-res Image Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRT222 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0839 (Fisher's exact test), Q value = 0.2

Table S5634.  Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KRT222 MUTATED 0 5 0 1 0
KRT222 WILD-TYPE 39 91 44 87 80
'KRT222 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 0.99

Table S5635.  Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KRT222 MUTATED 0 1 2 2 1
KRT222 WILD-TYPE 26 78 71 80 57
'KRT222 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 0.14

Table S5636.  Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KRT222 MUTATED 1 3 0 2
KRT222 WILD-TYPE 126 48 71 67
'KRT222 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.58

Table S5637.  Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KRT222 MUTATED 1 1 4 1 0
KRT222 WILD-TYPE 83 84 81 68 47
'KRT222 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 0.78

Table S5638.  Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KRT222 MUTATED 2 2 1 2
KRT222 WILD-TYPE 93 72 120 78
'KRT222 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S5639.  Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KRT222 MUTATED 3 2 0 1 1 1
KRT222 WILD-TYPE 49 62 72 103 39 58
'KRT222 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 0.78

Table S5640.  Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KRT222 MUTATED 5 2 1
KRT222 WILD-TYPE 212 73 98
'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S5641.  Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KRT222 MUTATED 4 0 2
KRT222 WILD-TYPE 117 108 70
'KRT222 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S5642.  Gene #566: 'KRT222 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KRT222 MUTATED 2 0 1 0 3
KRT222 WILD-TYPE 86 66 44 55 44
'AP2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S5643.  Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AP2A2 MUTATED 2 10 2 0
AP2A2 WILD-TYPE 202 127 45 3

Figure S2261.  Get High-res Image Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AP2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.015

Table S5644.  Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AP2A2 MUTATED 1 9 1 0 0
AP2A2 WILD-TYPE 38 87 43 88 80

Figure S2262.  Get High-res Image Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AP2A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.607 (Fisher's exact test), Q value = 0.7

Table S5645.  Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AP2A2 MUTATED 0 4 5 2 2
AP2A2 WILD-TYPE 26 75 68 80 56
'AP2A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S5646.  Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AP2A2 MUTATED 4 5 3 1
AP2A2 WILD-TYPE 123 46 68 68
'AP2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.095

Table S5647.  Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AP2A2 MUTATED 0 5 7 1 1
AP2A2 WILD-TYPE 84 80 78 68 46

Figure S2263.  Get High-res Image Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AP2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0707 (Fisher's exact test), Q value = 0.18

Table S5648.  Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AP2A2 MUTATED 3 5 1 5
AP2A2 WILD-TYPE 92 69 120 75
'AP2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.58

Table S5649.  Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AP2A2 MUTATED 2 4 3 3 2 0
AP2A2 WILD-TYPE 50 60 69 101 38 59
'AP2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S5650.  Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AP2A2 MUTATED 9 4 1
AP2A2 WILD-TYPE 208 71 98
'AP2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S5651.  Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AP2A2 MUTATED 1 4 2
AP2A2 WILD-TYPE 120 104 70
'AP2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 0.71

Table S5652.  Gene #567: 'AP2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AP2A2 MUTATED 2 3 1 0 1
AP2A2 WILD-TYPE 86 63 44 55 46
'RUSC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00056 (Fisher's exact test), Q value = 0.011

Table S5653.  Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RUSC2 MUTATED 3 16 1 0
RUSC2 WILD-TYPE 201 121 46 3

Figure S2264.  Get High-res Image Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RUSC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S5654.  Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RUSC2 MUTATED 2 9 3 0 2
RUSC2 WILD-TYPE 37 87 41 88 78

Figure S2265.  Get High-res Image Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RUSC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S5655.  Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RUSC2 MUTATED 2 5 5 1 4
RUSC2 WILD-TYPE 24 74 68 81 54
'RUSC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00528 (Fisher's exact test), Q value = 0.04

Table S5656.  Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RUSC2 MUTATED 8 7 2 0
RUSC2 WILD-TYPE 119 44 69 69

Figure S2266.  Get High-res Image Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.6

Table S5657.  Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RUSC2 MUTATED 2 3 7 4 2
RUSC2 WILD-TYPE 82 82 78 65 45
'RUSC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S5658.  Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RUSC2 MUTATED 7 4 2 5
RUSC2 WILD-TYPE 88 70 119 75
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S5659.  Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RUSC2 MUTATED 5 6 1 6 1 1
RUSC2 WILD-TYPE 47 58 71 98 39 58
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.41

Table S5660.  Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RUSC2 MUTATED 14 4 2
RUSC2 WILD-TYPE 203 71 97
'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S5661.  Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RUSC2 MUTATED 5 2 8
RUSC2 WILD-TYPE 116 106 64

Figure S2267.  Get High-res Image Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RUSC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S5662.  Gene #568: 'RUSC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RUSC2 MUTATED 4 4 3 0 4
RUSC2 WILD-TYPE 84 62 42 55 43
'FAM186B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.1

Table S5663.  Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM186B MUTATED 2 9 2 0
FAM186B WILD-TYPE 202 128 45 3

Figure S2268.  Get High-res Image Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM186B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0628 (Fisher's exact test), Q value = 0.16

Table S5664.  Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM186B MUTATED 2 5 0 1 0
FAM186B WILD-TYPE 37 91 44 87 80
'FAM186B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S5665.  Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM186B MUTATED 0 5 1 2 3
FAM186B WILD-TYPE 26 74 72 80 55
'FAM186B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.13

Table S5666.  Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM186B MUTATED 2 5 3 1
FAM186B WILD-TYPE 125 46 68 68

Figure S2269.  Get High-res Image Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM186B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0038 (Fisher's exact test), Q value = 0.033

Table S5667.  Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM186B MUTATED 0 0 7 3 2
FAM186B WILD-TYPE 84 85 78 66 45

Figure S2270.  Get High-res Image Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM186B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.077

Table S5668.  Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM186B MUTATED 5 2 0 5
FAM186B WILD-TYPE 90 72 121 75

Figure S2271.  Get High-res Image Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00492 (Fisher's exact test), Q value = 0.038

Table S5669.  Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM186B MUTATED 3 6 3 0 1 0
FAM186B WILD-TYPE 49 58 69 104 39 59

Figure S2272.  Get High-res Image Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM186B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S5670.  Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM186B MUTATED 11 1 1
FAM186B WILD-TYPE 206 74 98
'FAM186B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S5671.  Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM186B MUTATED 4 1 3
FAM186B WILD-TYPE 117 107 69
'FAM186B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00974 (Fisher's exact test), Q value = 0.056

Table S5672.  Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM186B MUTATED 2 0 0 1 5
FAM186B WILD-TYPE 86 66 45 54 42

Figure S2273.  Get High-res Image Gene #569: 'FAM186B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MEGF8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00042 (Fisher's exact test), Q value = 0.0094

Table S5673.  Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MEGF8 MUTATED 5 20 4 0
MEGF8 WILD-TYPE 199 117 43 3

Figure S2274.  Get High-res Image Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MEGF8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S5674.  Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MEGF8 MUTATED 1 14 6 1 1
MEGF8 WILD-TYPE 38 82 38 87 79

Figure S2275.  Get High-res Image Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MEGF8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.17

Table S5675.  Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MEGF8 MUTATED 1 8 8 1 4
MEGF8 WILD-TYPE 25 71 65 81 54
'MEGF8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00942 (Fisher's exact test), Q value = 0.055

Table S5676.  Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MEGF8 MUTATED 5 9 6 2
MEGF8 WILD-TYPE 122 42 65 67

Figure S2276.  Get High-res Image Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MEGF8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.11

Table S5677.  Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MEGF8 MUTATED 3 6 14 4 2
MEGF8 WILD-TYPE 81 79 71 65 45

Figure S2277.  Get High-res Image Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MEGF8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00209 (Fisher's exact test), Q value = 0.024

Table S5678.  Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MEGF8 MUTATED 7 5 3 14
MEGF8 WILD-TYPE 88 69 118 66

Figure S2278.  Get High-res Image Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MEGF8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00332 (Fisher's exact test), Q value = 0.031

Table S5679.  Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MEGF8 MUTATED 8 10 6 2 1 3
MEGF8 WILD-TYPE 44 54 66 102 39 56

Figure S2279.  Get High-res Image Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MEGF8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.082

Table S5680.  Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MEGF8 MUTATED 24 2 4
MEGF8 WILD-TYPE 193 73 95

Figure S2280.  Get High-res Image Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MEGF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.16

Table S5681.  Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MEGF8 MUTATED 10 2 6
MEGF8 WILD-TYPE 111 106 66
'MEGF8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.049 (Fisher's exact test), Q value = 0.14

Table S5682.  Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MEGF8 MUTATED 4 2 4 1 7
MEGF8 WILD-TYPE 84 64 41 54 40

Figure S2281.  Get High-res Image Gene #570: 'MEGF8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S5683.  Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CTSD MUTATED 2 4 2 0
CTSD WILD-TYPE 202 133 45 3
'CTSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 0.15

Table S5684.  Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CTSD MUTATED 0 6 0 2 0
CTSD WILD-TYPE 39 90 44 86 80
'CTSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.68

Table S5685.  Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CTSD MUTATED 0 1 2 1 3
CTSD WILD-TYPE 26 78 71 81 55
'CTSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0533 (Fisher's exact test), Q value = 0.15

Table S5686.  Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CTSD MUTATED 1 4 1 1
CTSD WILD-TYPE 126 47 70 68
'CTSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0195 (Fisher's exact test), Q value = 0.083

Table S5687.  Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CTSD MUTATED 1 0 5 0 2
CTSD WILD-TYPE 83 85 80 69 45

Figure S2282.  Get High-res Image Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.08

Table S5688.  Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CTSD MUTATED 2 1 0 5
CTSD WILD-TYPE 93 73 121 75

Figure S2283.  Get High-res Image Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S5689.  Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CTSD MUTATED 1 2 3 1 0 1
CTSD WILD-TYPE 51 62 69 103 40 58
'CTSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.6

Table S5690.  Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CTSD MUTATED 6 0 2
CTSD WILD-TYPE 211 75 97
'CTSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.16

Table S5691.  Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CTSD MUTATED 2 1 5
CTSD WILD-TYPE 119 107 67
'CTSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00124 (Fisher's exact test), Q value = 0.018

Table S5692.  Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CTSD MUTATED 0 0 2 1 5
CTSD WILD-TYPE 88 66 43 54 42

Figure S2284.  Get High-res Image Gene #571: 'CTSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UBQLN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S5693.  Gene #572: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UBQLN2 MUTATED 2 5 0 0
UBQLN2 WILD-TYPE 202 132 47 3
'UBQLN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5694.  Gene #572: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UBQLN2 MUTATED 0 2 1 2 1
UBQLN2 WILD-TYPE 39 94 43 86 79
'UBQLN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.33

Table S5695.  Gene #572: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UBQLN2 MUTATED 0 4 1 0 1
UBQLN2 WILD-TYPE 26 75 72 82 57
'UBQLN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S5696.  Gene #572: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UBQLN2 MUTATED 2 2 2 0
UBQLN2 WILD-TYPE 125 49 69 69
'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 0.76

Table S5697.  Gene #572: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UBQLN2 MUTATED 1 1 3 2 0
UBQLN2 WILD-TYPE 83 84 82 67 47
'UBQLN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S5698.  Gene #572: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UBQLN2 MUTATED 4 0 2 1
UBQLN2 WILD-TYPE 91 74 119 79
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S5699.  Gene #572: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UBQLN2 MUTATED 2 3 1 0 0 1
UBQLN2 WILD-TYPE 50 61 71 104 40 58
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 0.92

Table S5700.  Gene #572: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UBQLN2 MUTATED 5 1 1
UBQLN2 WILD-TYPE 212 74 98
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S5701.  Gene #572: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
UBQLN2 MUTATED 3 0 2
UBQLN2 WILD-TYPE 118 108 70
'UBQLN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.382 (Fisher's exact test), Q value = 0.5

Table S5702.  Gene #572: 'UBQLN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
UBQLN2 MUTATED 1 0 2 1 1
UBQLN2 WILD-TYPE 87 66 43 54 46
'FNDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S5703.  Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FNDC4 MUTATED 1 4 0 0
FNDC4 WILD-TYPE 203 133 47 3
'FNDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S5704.  Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FNDC4 MUTATED 0 4 1 0 1
FNDC4 WILD-TYPE 39 92 43 88 79
'FNDC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S5705.  Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FNDC4 MUTATED 0 3 1 0 1
FNDC4 WILD-TYPE 26 76 72 82 57
'FNDC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S5706.  Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FNDC4 MUTATED 1 2 2 0
FNDC4 WILD-TYPE 126 49 69 69
'FNDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.45

Table S5707.  Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FNDC4 MUTATED 0 1 1 1 2
FNDC4 WILD-TYPE 84 84 84 68 45
'FNDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S5708.  Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FNDC4 MUTATED 1 0 0 4
FNDC4 WILD-TYPE 94 74 121 76

Figure S2285.  Get High-res Image Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FNDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S5709.  Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FNDC4 MUTATED 3 1 0 1 1 0
FNDC4 WILD-TYPE 49 63 72 103 39 59
'FNDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S5710.  Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FNDC4 MUTATED 6 0 0
FNDC4 WILD-TYPE 211 75 99
'FNDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.68

Table S5711.  Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FNDC4 MUTATED 4 1 1
FNDC4 WILD-TYPE 117 107 71
'FNDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S5712.  Gene #573: 'FNDC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FNDC4 MUTATED 3 0 1 0 2
FNDC4 WILD-TYPE 85 66 44 55 45
'LIPH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S5713.  Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LIPH MUTATED 2 4 1 0
LIPH WILD-TYPE 202 133 46 3
'LIPH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.096

Table S5714.  Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LIPH MUTATED 3 1 2 1 0
LIPH WILD-TYPE 36 95 42 87 80

Figure S2286.  Get High-res Image Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LIPH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S5715.  Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LIPH MUTATED 1 2 1 0 2
LIPH WILD-TYPE 25 77 72 82 56
'LIPH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S5716.  Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LIPH MUTATED 2 2 1 1
LIPH WILD-TYPE 125 49 70 68
'LIPH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S5717.  Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LIPH MUTATED 0 1 3 2 1
LIPH WILD-TYPE 84 84 82 67 46
'LIPH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.78

Table S5718.  Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LIPH MUTATED 2 2 1 2
LIPH WILD-TYPE 93 72 120 78
'LIPH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.42

Table S5719.  Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LIPH MUTATED 0 3 2 1 1 0
LIPH WILD-TYPE 52 61 70 103 39 59
'LIPH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S5720.  Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LIPH MUTATED 6 0 1
LIPH WILD-TYPE 211 75 98
'LIPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.55

Table S5721.  Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LIPH MUTATED 3 1 3
LIPH WILD-TYPE 118 107 69
'LIPH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S5722.  Gene #574: 'LIPH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LIPH MUTATED 3 0 1 0 3
LIPH WILD-TYPE 85 66 44 55 44
'FBXO43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S5723.  Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FBXO43 MUTATED 1 8 1 0
FBXO43 WILD-TYPE 203 129 46 3

Figure S2287.  Get High-res Image Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FBXO43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S5724.  Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FBXO43 MUTATED 0 6 0 1 1
FBXO43 WILD-TYPE 39 90 44 87 79
'FBXO43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S5725.  Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FBXO43 MUTATED 1 2 2 0 3
FBXO43 WILD-TYPE 25 77 71 82 55
'FBXO43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0211 (Fisher's exact test), Q value = 0.087

Table S5726.  Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FBXO43 MUTATED 4 4 0 0
FBXO43 WILD-TYPE 123 47 71 69

Figure S2288.  Get High-res Image Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBXO43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S5727.  Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FBXO43 MUTATED 0 1 3 2 3
FBXO43 WILD-TYPE 84 84 82 67 44
'FBXO43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 0.16

Table S5728.  Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FBXO43 MUTATED 5 0 1 3
FBXO43 WILD-TYPE 90 74 120 77
'FBXO43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.1

Table S5729.  Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FBXO43 MUTATED 3 4 2 0 1 0
FBXO43 WILD-TYPE 49 60 70 104 39 59

Figure S2289.  Get High-res Image Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FBXO43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0881 (Fisher's exact test), Q value = 0.2

Table S5730.  Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FBXO43 MUTATED 9 0 1
FBXO43 WILD-TYPE 208 75 98
'FBXO43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S5731.  Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FBXO43 MUTATED 4 1 2
FBXO43 WILD-TYPE 117 107 70
'FBXO43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.06

Table S5732.  Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FBXO43 MUTATED 1 0 2 0 4
FBXO43 WILD-TYPE 87 66 43 55 43

Figure S2290.  Get High-res Image Gene #575: 'FBXO43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HOXB7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S5733.  Gene #576: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HOXB7 MUTATED 1 5 0 0
HOXB7 WILD-TYPE 203 132 47 3
'HOXB7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 0.2

Table S5734.  Gene #576: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HOXB7 MUTATED 1 4 1 0 0
HOXB7 WILD-TYPE 38 92 43 88 80
'HOXB7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S5735.  Gene #576: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HOXB7 MUTATED 1 2 2 0 0
HOXB7 WILD-TYPE 25 77 71 82 58
'HOXB7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.49

Table S5736.  Gene #576: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HOXB7 MUTATED 2 2 1 0
HOXB7 WILD-TYPE 125 49 70 69
'HOXB7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.75

Table S5737.  Gene #576: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HOXB7 MUTATED 0 2 2 1 1
HOXB7 WILD-TYPE 84 83 83 68 46
'HOXB7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.4

Table S5738.  Gene #576: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HOXB7 MUTATED 2 0 1 3
HOXB7 WILD-TYPE 93 74 120 77
'HOXB7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.29

Table S5739.  Gene #576: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HOXB7 MUTATED 2 0 1 1 2 0
HOXB7 WILD-TYPE 50 64 71 103 38 59
'HOXB7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.65

Table S5740.  Gene #576: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HOXB7 MUTATED 5 0 1
HOXB7 WILD-TYPE 212 75 98
'HOXB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.57

Table S5741.  Gene #576: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HOXB7 MUTATED 3 2 0
HOXB7 WILD-TYPE 118 106 72
'HOXB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0628 (Fisher's exact test), Q value = 0.16

Table S5742.  Gene #576: 'HOXB7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HOXB7 MUTATED 2 0 0 0 3
HOXB7 WILD-TYPE 86 66 45 55 44
'AGAP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00481 (Fisher's exact test), Q value = 0.038

Table S5743.  Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AGAP6 MUTATED 1 9 0 0
AGAP6 WILD-TYPE 203 128 47 3

Figure S2291.  Get High-res Image Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AGAP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.14

Table S5744.  Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AGAP6 MUTATED 0 7 0 1 1
AGAP6 WILD-TYPE 39 89 44 87 79

Figure S2292.  Get High-res Image Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AGAP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.48

Table S5745.  Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AGAP6 MUTATED 1 3 2 0 1
AGAP6 WILD-TYPE 25 76 71 82 57
'AGAP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S5746.  Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AGAP6 MUTATED 2 3 2 0
AGAP6 WILD-TYPE 125 48 69 69
'AGAP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.34

Table S5747.  Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AGAP6 MUTATED 1 0 3 3 2
AGAP6 WILD-TYPE 83 85 82 66 45
'AGAP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.062 (Fisher's exact test), Q value = 0.16

Table S5748.  Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AGAP6 MUTATED 5 0 1 3
AGAP6 WILD-TYPE 90 74 120 77
'AGAP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.14

Table S5749.  Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AGAP6 MUTATED 2 2 5 0 0 1
AGAP6 WILD-TYPE 50 62 67 104 40 58

Figure S2293.  Get High-res Image Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AGAP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0888 (Fisher's exact test), Q value = 0.2

Table S5750.  Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AGAP6 MUTATED 9 0 1
AGAP6 WILD-TYPE 208 75 98
'AGAP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S5751.  Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AGAP6 MUTATED 5 0 4
AGAP6 WILD-TYPE 116 108 68

Figure S2294.  Get High-res Image Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'AGAP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.088 (Fisher's exact test), Q value = 0.2

Table S5752.  Gene #577: 'AGAP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AGAP6 MUTATED 2 0 2 1 4
AGAP6 WILD-TYPE 86 66 43 54 43
'GPR160 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0715 (Fisher's exact test), Q value = 0.18

Table S5753.  Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPR160 MUTATED 1 6 1 0
GPR160 WILD-TYPE 203 131 46 3
'GPR160 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S5754.  Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPR160 MUTATED 2 1 1 1 0
GPR160 WILD-TYPE 37 95 43 87 80
'GPR160 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.33

Table S5755.  Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPR160 MUTATED 0 4 3 0 1
GPR160 WILD-TYPE 26 75 70 82 57
'GPR160 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-04 (Fisher's exact test), Q value = 0.0078

Table S5756.  Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPR160 MUTATED 0 5 3 0
GPR160 WILD-TYPE 127 46 68 69

Figure S2295.  Get High-res Image Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR160 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.75

Table S5757.  Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPR160 MUTATED 0 2 2 1 1
GPR160 WILD-TYPE 84 83 83 68 46
'GPR160 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 0.75

Table S5758.  Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPR160 MUTATED 3 1 1 1
GPR160 WILD-TYPE 92 73 120 79
'GPR160 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S5759.  Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPR160 MUTATED 1 4 0 1 1 1
GPR160 WILD-TYPE 51 60 72 103 39 58
'GPR160 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S5760.  Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPR160 MUTATED 6 1 1
GPR160 WILD-TYPE 211 74 98
'GPR160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S5761.  Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPR160 MUTATED 3 0 2
GPR160 WILD-TYPE 118 108 70
'GPR160 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5762.  Gene #578: 'GPR160 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPR160 MUTATED 1 1 1 1 1
GPR160 WILD-TYPE 87 65 44 54 46
'FAM46D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 0.42

Table S5763.  Gene #579: 'FAM46D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM46D MUTATED 3 6 1 0
FAM46D WILD-TYPE 201 131 46 3
'FAM46D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S5764.  Gene #579: 'FAM46D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM46D MUTATED 1 5 0 1 3
FAM46D WILD-TYPE 38 91 44 87 77
'FAM46D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.39

Table S5765.  Gene #579: 'FAM46D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM46D MUTATED 1 4 2 0 2
FAM46D WILD-TYPE 25 75 71 82 56
'FAM46D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.311 (Fisher's exact test), Q value = 0.44

Table S5766.  Gene #579: 'FAM46D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM46D MUTATED 2 2 4 1
FAM46D WILD-TYPE 125 49 67 68
'FAM46D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.62

Table S5767.  Gene #579: 'FAM46D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM46D MUTATED 2 2 3 0 2
FAM46D WILD-TYPE 82 83 82 69 45
'FAM46D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.32

Table S5768.  Gene #579: 'FAM46D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM46D MUTATED 0 3 3 3
FAM46D WILD-TYPE 95 71 118 77
'FAM46D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 0.9

Table S5769.  Gene #579: 'FAM46D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM46D MUTATED 1 3 1 2 1 2
FAM46D WILD-TYPE 51 61 71 102 39 57
'FAM46D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.76

Table S5770.  Gene #579: 'FAM46D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM46D MUTATED 5 3 2
FAM46D WILD-TYPE 212 72 97
'FAM46D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S5771.  Gene #579: 'FAM46D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM46D MUTATED 2 3 5
FAM46D WILD-TYPE 119 105 67
'FAM46D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S5772.  Gene #579: 'FAM46D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM46D MUTATED 0 3 2 2 3
FAM46D WILD-TYPE 88 63 43 53 44
'CSF3R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.14

Table S5773.  Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CSF3R MUTATED 2 8 2 0
CSF3R WILD-TYPE 202 129 45 3

Figure S2296.  Get High-res Image Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CSF3R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00643 (Fisher's exact test), Q value = 0.044

Table S5774.  Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CSF3R MUTATED 1 7 2 0 0
CSF3R WILD-TYPE 38 89 42 88 80

Figure S2297.  Get High-res Image Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSF3R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0956 (Fisher's exact test), Q value = 0.21

Table S5775.  Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CSF3R MUTATED 0 3 5 0 3
CSF3R WILD-TYPE 26 76 68 82 55
'CSF3R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.49

Table S5776.  Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CSF3R MUTATED 3 4 2 2
CSF3R WILD-TYPE 124 47 69 67
'CSF3R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.11

Table S5777.  Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CSF3R MUTATED 0 2 5 1 4
CSF3R WILD-TYPE 84 83 80 68 43

Figure S2298.  Get High-res Image Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CSF3R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00405 (Fisher's exact test), Q value = 0.034

Table S5778.  Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CSF3R MUTATED 3 2 0 7
CSF3R WILD-TYPE 92 72 121 73

Figure S2299.  Get High-res Image Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.072

Table S5779.  Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CSF3R MUTATED 3 6 1 1 1 0
CSF3R WILD-TYPE 49 58 71 103 39 59

Figure S2300.  Get High-res Image Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CSF3R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.62

Table S5780.  Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CSF3R MUTATED 9 1 2
CSF3R WILD-TYPE 208 74 97
'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S5781.  Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CSF3R MUTATED 4 1 4
CSF3R WILD-TYPE 117 107 68
'CSF3R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 0.44

Table S5782.  Gene #580: 'CSF3R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CSF3R MUTATED 3 1 2 0 3
CSF3R WILD-TYPE 85 65 43 55 44
'PRMT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.091

Table S5783.  Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRMT3 MUTATED 1 5 3 0
PRMT3 WILD-TYPE 203 132 44 3

Figure S2301.  Get High-res Image Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRMT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.2

Table S5784.  Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PRMT3 MUTATED 3 3 1 1 0
PRMT3 WILD-TYPE 36 93 43 87 80
'PRMT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 0.85

Table S5785.  Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRMT3 MUTATED 0 3 2 1 2
PRMT3 WILD-TYPE 26 76 71 81 56
'PRMT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.823 (Fisher's exact test), Q value = 0.87

Table S5786.  Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRMT3 MUTATED 3 1 3 1
PRMT3 WILD-TYPE 124 50 68 68
'PRMT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00595 (Fisher's exact test), Q value = 0.043

Table S5787.  Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRMT3 MUTATED 0 0 6 1 1
PRMT3 WILD-TYPE 84 85 79 68 46

Figure S2302.  Get High-res Image Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PRMT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0716 (Fisher's exact test), Q value = 0.18

Table S5788.  Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRMT3 MUTATED 1 1 1 5
PRMT3 WILD-TYPE 94 73 120 75
'PRMT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.49

Table S5789.  Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRMT3 MUTATED 1 3 3 1 1 0
PRMT3 WILD-TYPE 51 61 69 103 39 59
'PRMT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0971 (Fisher's exact test), Q value = 0.21

Table S5790.  Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRMT3 MUTATED 8 1 0
PRMT3 WILD-TYPE 209 74 99
'PRMT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S5791.  Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PRMT3 MUTATED 2 1 4
PRMT3 WILD-TYPE 119 107 68
'PRMT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S5792.  Gene #581: 'PRMT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PRMT3 MUTATED 4 0 1 0 2
PRMT3 WILD-TYPE 84 66 44 55 45
'FGF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.11

Table S5793.  Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FGF7 MUTATED 0 5 0 0
FGF7 WILD-TYPE 204 132 47 3

Figure S2303.  Get High-res Image Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FGF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 0.19

Table S5794.  Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FGF7 MUTATED 1 1 2 0 0
FGF7 WILD-TYPE 38 95 42 88 80
'FGF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S5795.  Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FGF7 MUTATED 1 1 1 0 1
FGF7 WILD-TYPE 25 78 72 82 57
'FGF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.88

Table S5796.  Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FGF7 MUTATED 2 1 1 0
FGF7 WILD-TYPE 125 50 70 69
'FGF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S5797.  Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FGF7 MUTATED 1 0 3 0 1
FGF7 WILD-TYPE 83 85 82 69 46
'FGF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0478 (Fisher's exact test), Q value = 0.14

Table S5798.  Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FGF7 MUTATED 2 0 0 3
FGF7 WILD-TYPE 93 74 121 77

Figure S2304.  Get High-res Image Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FGF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S5799.  Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FGF7 MUTATED 2 2 0 0 0 1
FGF7 WILD-TYPE 50 62 72 104 40 58
'FGF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 0.88

Table S5800.  Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FGF7 MUTATED 4 0 1
FGF7 WILD-TYPE 213 75 98
'FGF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S5801.  Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FGF7 MUTATED 3 0 1
FGF7 WILD-TYPE 118 108 71
'FGF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.64

Table S5802.  Gene #582: 'FGF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FGF7 MUTATED 2 0 1 0 1
FGF7 WILD-TYPE 86 66 44 55 46
'AGAP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S5803.  Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AGAP5 MUTATED 2 5 0 0
AGAP5 WILD-TYPE 202 132 47 3
'AGAP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.21

Table S5804.  Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AGAP5 MUTATED 1 5 0 0 1
AGAP5 WILD-TYPE 38 91 44 88 79
'AGAP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 0.99

Table S5805.  Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AGAP5 MUTATED 0 2 1 1 1
AGAP5 WILD-TYPE 26 77 72 81 57
'AGAP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.59

Table S5806.  Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AGAP5 MUTATED 1 2 1 1
AGAP5 WILD-TYPE 126 49 70 68
'AGAP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.034

Table S5807.  Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AGAP5 MUTATED 0 0 6 2 0
AGAP5 WILD-TYPE 84 85 79 67 47

Figure S2305.  Get High-res Image Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AGAP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.14

Table S5808.  Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AGAP5 MUTATED 3 1 0 4
AGAP5 WILD-TYPE 92 73 121 76

Figure S2306.  Get High-res Image Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AGAP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.21

Table S5809.  Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AGAP5 MUTATED 4 1 1 1 1 0
AGAP5 WILD-TYPE 48 63 71 103 39 59
'AGAP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S5810.  Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AGAP5 MUTATED 7 1 0
AGAP5 WILD-TYPE 210 74 99
'AGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0323 (Fisher's exact test), Q value = 0.11

Table S5811.  Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AGAP5 MUTATED 6 0 1
AGAP5 WILD-TYPE 115 108 71

Figure S2307.  Get High-res Image Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'AGAP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0486 (Fisher's exact test), Q value = 0.14

Table S5812.  Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AGAP5 MUTATED 4 0 0 0 3
AGAP5 WILD-TYPE 84 66 45 55 44

Figure S2308.  Get High-res Image Gene #583: 'AGAP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STEAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.48

Table S5813.  Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
STEAP2 MUTATED 2 4 0 0
STEAP2 WILD-TYPE 202 133 47 3
'STEAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.17

Table S5814.  Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
STEAP2 MUTATED 1 4 0 0 0
STEAP2 WILD-TYPE 38 92 44 88 80
'STEAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S5815.  Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
STEAP2 MUTATED 0 1 2 0 2
STEAP2 WILD-TYPE 26 78 71 82 56
'STEAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00224 (Fisher's exact test), Q value = 0.025

Table S5816.  Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
STEAP2 MUTATED 0 4 1 0
STEAP2 WILD-TYPE 127 47 70 69

Figure S2309.  Get High-res Image Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'STEAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00629 (Fisher's exact test), Q value = 0.044

Table S5817.  Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
STEAP2 MUTATED 0 0 5 0 1
STEAP2 WILD-TYPE 84 85 80 69 46

Figure S2310.  Get High-res Image Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STEAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00304 (Fisher's exact test), Q value = 0.029

Table S5818.  Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
STEAP2 MUTATED 1 0 0 5
STEAP2 WILD-TYPE 94 74 121 75

Figure S2311.  Get High-res Image Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STEAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.17

Table S5819.  Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
STEAP2 MUTATED 2 3 1 0 0 0
STEAP2 WILD-TYPE 50 61 71 104 40 59
'STEAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S5820.  Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
STEAP2 MUTATED 6 0 0
STEAP2 WILD-TYPE 211 75 99
'STEAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S5821.  Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
STEAP2 MUTATED 2 0 2
STEAP2 WILD-TYPE 119 108 70
'STEAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.37

Table S5822.  Gene #584: 'STEAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
STEAP2 MUTATED 1 0 1 0 2
STEAP2 WILD-TYPE 87 66 44 55 45
'CDKL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.065

Table S5823.  Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDKL3 MUTATED 0 6 1 0
CDKL3 WILD-TYPE 204 131 46 3

Figure S2312.  Get High-res Image Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDKL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.55

Table S5824.  Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDKL3 MUTATED 0 3 1 0 2
CDKL3 WILD-TYPE 39 93 43 88 78
'CDKL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.75

Table S5825.  Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDKL3 MUTATED 1 3 1 1 1
CDKL3 WILD-TYPE 25 76 72 81 57
'CDKL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0518 (Fisher's exact test), Q value = 0.15

Table S5826.  Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDKL3 MUTATED 1 4 1 1
CDKL3 WILD-TYPE 126 47 70 68
'CDKL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00608 (Fisher's exact test), Q value = 0.043

Table S5827.  Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDKL3 MUTATED 0 0 5 0 1
CDKL3 WILD-TYPE 84 85 80 69 46

Figure S2313.  Get High-res Image Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDKL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.57

Table S5828.  Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDKL3 MUTATED 0 1 3 2
CDKL3 WILD-TYPE 95 73 118 78
'CDKL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0421 (Fisher's exact test), Q value = 0.13

Table S5829.  Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDKL3 MUTATED 1 4 1 0 1 0
CDKL3 WILD-TYPE 51 60 71 104 39 59

Figure S2314.  Get High-res Image Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CDKL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 0.42

Table S5830.  Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDKL3 MUTATED 5 2 0
CDKL3 WILD-TYPE 212 73 99
'CDKL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.079

Table S5831.  Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDKL3 MUTATED 1 0 4
CDKL3 WILD-TYPE 120 108 68

Figure S2315.  Get High-res Image Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDKL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0528 (Fisher's exact test), Q value = 0.15

Table S5832.  Gene #585: 'CDKL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDKL3 MUTATED 1 0 3 0 1
CDKL3 WILD-TYPE 87 66 42 55 46
'FAM113A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 0.061

Table S5833.  Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM113A MUTATED 1 8 0 0
FAM113A WILD-TYPE 203 129 47 3

Figure S2316.  Get High-res Image Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM113A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.67

Table S5834.  Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM113A MUTATED 0 2 1 0 2
FAM113A WILD-TYPE 39 94 43 88 78
'FAM113A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S5835.  Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM113A MUTATED 2 2 1 1 2
FAM113A WILD-TYPE 24 77 72 81 56
'FAM113A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.51

Table S5836.  Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM113A MUTATED 2 3 1 2
FAM113A WILD-TYPE 125 48 70 67
'FAM113A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.765 (Fisher's exact test), Q value = 0.83

Table S5837.  Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM113A MUTATED 1 2 3 2 0
FAM113A WILD-TYPE 83 83 82 67 47
'FAM113A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0819 (Fisher's exact test), Q value = 0.19

Table S5838.  Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM113A MUTATED 4 3 1 0
FAM113A WILD-TYPE 91 71 120 80
'FAM113A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0086 (Fisher's exact test), Q value = 0.052

Table S5839.  Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM113A MUTATED 1 6 0 1 0 1
FAM113A WILD-TYPE 51 58 72 103 40 58

Figure S2317.  Get High-res Image Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM113A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.68

Table S5840.  Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM113A MUTATED 7 1 1
FAM113A WILD-TYPE 210 74 98
'FAM113A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S5841.  Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM113A MUTATED 1 1 3
FAM113A WILD-TYPE 120 107 69
'FAM113A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 0.6

Table S5842.  Gene #586: 'FAM113A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM113A MUTATED 1 1 2 0 1
FAM113A WILD-TYPE 87 65 43 55 46
'ZNF207 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0238 (Fisher's exact test), Q value = 0.093

Table S5843.  Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF207 MUTATED 1 7 0 0
ZNF207 WILD-TYPE 203 130 47 3

Figure S2318.  Get High-res Image Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF207 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.31

Table S5844.  Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF207 MUTATED 1 5 1 1 0
ZNF207 WILD-TYPE 38 91 43 87 80
'ZNF207 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S5845.  Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF207 MUTATED 0 0 4 1 2
ZNF207 WILD-TYPE 26 79 69 81 56
'ZNF207 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S5846.  Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF207 MUTATED 0 6 0 1
ZNF207 WILD-TYPE 127 45 71 68

Figure S2319.  Get High-res Image Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF207 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00191 (Fisher's exact test), Q value = 0.022

Table S5847.  Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF207 MUTATED 0 0 6 0 2
ZNF207 WILD-TYPE 84 85 79 69 45

Figure S2320.  Get High-res Image Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF207 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00262 (Fisher's exact test), Q value = 0.027

Table S5848.  Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF207 MUTATED 1 1 0 6
ZNF207 WILD-TYPE 94 73 121 74

Figure S2321.  Get High-res Image Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF207 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.37

Table S5849.  Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF207 MUTATED 3 2 2 1 0 0
ZNF207 WILD-TYPE 49 62 70 103 40 59
'ZNF207 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S5850.  Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF207 MUTATED 6 0 2
ZNF207 WILD-TYPE 211 75 97
'ZNF207 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S5851.  Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF207 MUTATED 4 1 1
ZNF207 WILD-TYPE 117 107 71
'ZNF207 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.697 (Fisher's exact test), Q value = 0.77

Table S5852.  Gene #587: 'ZNF207 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF207 MUTATED 3 0 1 1 1
ZNF207 WILD-TYPE 85 66 44 54 46
'ICAM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.49

Table S5853.  Gene #588: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ICAM3 MUTATED 1 3 0 0
ICAM3 WILD-TYPE 203 134 47 3
'ICAM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.14

Table S5854.  Gene #588: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ICAM3 MUTATED 2 0 1 1 0
ICAM3 WILD-TYPE 24 79 72 81 58

Figure S2322.  Get High-res Image Gene #588: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ICAM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 0.83

Table S5855.  Gene #588: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ICAM3 MUTATED 2 1 0 1
ICAM3 WILD-TYPE 125 50 71 68
'ICAM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5856.  Gene #588: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ICAM3 MUTATED 1 1 1 1 0
ICAM3 WILD-TYPE 83 84 84 68 47
'ICAM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.53

Table S5857.  Gene #588: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ICAM3 MUTATED 2 1 0 1
ICAM3 WILD-TYPE 93 73 121 79
'ICAM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S5858.  Gene #588: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ICAM3 MUTATED 1 2 0 0 0 1
ICAM3 WILD-TYPE 51 62 72 104 40 58
'ICAM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.62

Table S5859.  Gene #588: 'ICAM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ICAM3 MUTATED 2 0 2
ICAM3 WILD-TYPE 215 75 97
'MKL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00117 (Fisher's exact test), Q value = 0.017

Table S5860.  Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MKL1 MUTATED 2 11 1 1
MKL1 WILD-TYPE 202 126 46 2

Figure S2323.  Get High-res Image Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MKL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S5861.  Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MKL1 MUTATED 2 7 1 1 1
MKL1 WILD-TYPE 37 89 43 87 79
'MKL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.26

Table S5862.  Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MKL1 MUTATED 1 4 3 0 4
MKL1 WILD-TYPE 25 75 70 82 54
'MKL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00869 (Fisher's exact test), Q value = 0.052

Table S5863.  Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MKL1 MUTATED 3 6 3 0
MKL1 WILD-TYPE 124 45 68 69

Figure S2324.  Get High-res Image Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MKL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 0.8

Table S5864.  Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MKL1 MUTATED 2 2 5 3 1
MKL1 WILD-TYPE 82 83 80 66 46
'MKL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.5

Table S5865.  Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MKL1 MUTATED 4 1 3 5
MKL1 WILD-TYPE 91 73 118 75
'MKL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S5866.  Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MKL1 MUTATED 5 4 2 2 0 2
MKL1 WILD-TYPE 47 60 70 102 40 57
'MKL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 0.97

Table S5867.  Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MKL1 MUTATED 9 3 3
MKL1 WILD-TYPE 208 72 96
'MKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S5868.  Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MKL1 MUTATED 6 2 3
MKL1 WILD-TYPE 115 106 69
'MKL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 0.86

Table S5869.  Gene #589: 'MKL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MKL1 MUTATED 3 2 2 1 3
MKL1 WILD-TYPE 85 64 43 54 44
'HSP90AA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S5870.  Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HSP90AA1 MUTATED 3 8 1 0
HSP90AA1 WILD-TYPE 201 129 46 3
'HSP90AA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 0.077

Table S5871.  Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HSP90AA1 MUTATED 1 8 2 1 0
HSP90AA1 WILD-TYPE 38 88 42 87 80

Figure S2325.  Get High-res Image Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HSP90AA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S5872.  Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HSP90AA1 MUTATED 0 5 4 1 0
HSP90AA1 WILD-TYPE 26 74 69 81 58
'HSP90AA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.11

Table S5873.  Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HSP90AA1 MUTATED 1 4 4 1
HSP90AA1 WILD-TYPE 126 47 67 68

Figure S2326.  Get High-res Image Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HSP90AA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.18

Table S5874.  Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HSP90AA1 MUTATED 1 2 6 0 2
HSP90AA1 WILD-TYPE 83 83 79 69 45
'HSP90AA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00509 (Fisher's exact test), Q value = 0.039

Table S5875.  Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HSP90AA1 MUTATED 0 1 3 7
HSP90AA1 WILD-TYPE 95 73 118 73

Figure S2327.  Get High-res Image Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.49

Table S5876.  Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HSP90AA1 MUTATED 3 3 3 3 0 0
HSP90AA1 WILD-TYPE 49 61 69 101 40 59
'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S5877.  Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HSP90AA1 MUTATED 9 2 1
HSP90AA1 WILD-TYPE 208 73 98
'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S5878.  Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HSP90AA1 MUTATED 3 2 4
HSP90AA1 WILD-TYPE 118 106 68
'HSP90AA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.43

Table S5879.  Gene #590: 'HSP90AA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HSP90AA1 MUTATED 4 1 1 0 3
HSP90AA1 WILD-TYPE 84 65 44 55 44
'PRPF4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00572 (Fisher's exact test), Q value = 0.042

Table S5880.  Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRPF4B MUTATED 1 9 0 0
PRPF4B WILD-TYPE 203 128 47 3

Figure S2328.  Get High-res Image Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRPF4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S5881.  Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PRPF4B MUTATED 0 4 2 1 0
PRPF4B WILD-TYPE 39 92 42 87 80
'PRPF4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.57

Table S5882.  Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRPF4B MUTATED 0 2 4 1 3
PRPF4B WILD-TYPE 26 77 69 81 55
'PRPF4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.13

Table S5883.  Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRPF4B MUTATED 2 5 2 1
PRPF4B WILD-TYPE 125 46 69 68

Figure S2329.  Get High-res Image Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PRPF4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S5884.  Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRPF4B MUTATED 1 2 3 0 3
PRPF4B WILD-TYPE 83 83 82 69 44
'PRPF4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.088

Table S5885.  Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRPF4B MUTATED 1 1 1 6
PRPF4B WILD-TYPE 94 73 120 74

Figure S2330.  Get High-res Image Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRPF4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S5886.  Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRPF4B MUTATED 2 5 1 1 0 1
PRPF4B WILD-TYPE 50 59 71 103 40 58
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.5

Table S5887.  Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRPF4B MUTATED 8 1 1
PRPF4B WILD-TYPE 209 74 98
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 0.18

Table S5888.  Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PRPF4B MUTATED 4 0 3
PRPF4B WILD-TYPE 117 108 69
'PRPF4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.59 (Fisher's exact test), Q value = 0.68

Table S5889.  Gene #591: 'PRPF4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PRPF4B MUTATED 1 1 2 1 2
PRPF4B WILD-TYPE 87 65 43 54 45
'BRCA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0064 (Fisher's exact test), Q value = 0.044

Table S5890.  Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BRCA2 MUTATED 10 21 2 0
BRCA2 WILD-TYPE 194 116 45 3

Figure S2331.  Get High-res Image Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRCA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00141 (Fisher's exact test), Q value = 0.019

Table S5891.  Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BRCA2 MUTATED 2 17 4 2 3
BRCA2 WILD-TYPE 37 79 40 86 77

Figure S2332.  Get High-res Image Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRCA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.19

Table S5892.  Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BRCA2 MUTATED 2 8 9 2 8
BRCA2 WILD-TYPE 24 71 64 80 50
'BRCA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00432 (Fisher's exact test), Q value = 0.035

Table S5893.  Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BRCA2 MUTATED 10 12 4 3
BRCA2 WILD-TYPE 117 39 67 66

Figure S2333.  Get High-res Image Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BRCA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00131 (Fisher's exact test), Q value = 0.018

Table S5894.  Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BRCA2 MUTATED 2 4 16 4 2
BRCA2 WILD-TYPE 82 81 69 65 45

Figure S2334.  Get High-res Image Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRCA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00552 (Fisher's exact test), Q value = 0.041

Table S5895.  Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BRCA2 MUTATED 6 3 5 14
BRCA2 WILD-TYPE 89 71 116 66

Figure S2335.  Get High-res Image Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00039 (Fisher's exact test), Q value = 0.009

Table S5896.  Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BRCA2 MUTATED 10 10 7 5 1 0
BRCA2 WILD-TYPE 42 54 65 99 39 59

Figure S2336.  Get High-res Image Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00106 (Fisher's exact test), Q value = 0.016

Table S5897.  Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BRCA2 MUTATED 28 3 2
BRCA2 WILD-TYPE 189 72 97

Figure S2337.  Get High-res Image Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BRCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.17

Table S5898.  Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BRCA2 MUTATED 12 4 9
BRCA2 WILD-TYPE 109 104 63
'BRCA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.088

Table S5899.  Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BRCA2 MUTATED 7 3 5 1 9
BRCA2 WILD-TYPE 81 63 40 54 38

Figure S2338.  Get High-res Image Gene #592: 'BRCA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S5900.  Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAP3K1 MUTATED 0 15 0 0
MAP3K1 WILD-TYPE 204 122 47 3

Figure S2339.  Get High-res Image Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP3K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0626 (Fisher's exact test), Q value = 0.16

Table S5901.  Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAP3K1 MUTATED 1 7 2 0 2
MAP3K1 WILD-TYPE 38 89 42 88 78
'MAP3K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0385 (Fisher's exact test), Q value = 0.12

Table S5902.  Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAP3K1 MUTATED 2 8 2 1 1
MAP3K1 WILD-TYPE 24 71 71 81 57

Figure S2340.  Get High-res Image Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MAP3K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.11

Table S5903.  Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAP3K1 MUTATED 3 6 4 1
MAP3K1 WILD-TYPE 124 45 67 68

Figure S2341.  Get High-res Image Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S5904.  Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAP3K1 MUTATED 0 4 4 2 2
MAP3K1 WILD-TYPE 84 81 81 67 45
'MAP3K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0862 (Fisher's exact test), Q value = 0.2

Table S5905.  Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAP3K1 MUTATED 2 4 1 5
MAP3K1 WILD-TYPE 93 70 120 75
'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.1

Table S5906.  Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAP3K1 MUTATED 4 6 1 4 0 0
MAP3K1 WILD-TYPE 48 58 71 100 40 59

Figure S2342.  Get High-res Image Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.08

Table S5907.  Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAP3K1 MUTATED 13 2 0
MAP3K1 WILD-TYPE 204 73 99

Figure S2343.  Get High-res Image Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S5908.  Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAP3K1 MUTATED 3 4 5
MAP3K1 WILD-TYPE 118 104 67
'MAP3K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S5909.  Gene #593: 'MAP3K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAP3K1 MUTATED 2 3 4 0 3
MAP3K1 WILD-TYPE 86 63 41 55 44
'ASPN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S5910.  Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ASPN MUTATED 0 6 0 0
ASPN WILD-TYPE 204 131 47 3

Figure S2344.  Get High-res Image Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ASPN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.094 (Fisher's exact test), Q value = 0.21

Table S5911.  Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ASPN MUTATED 1 2 2 0 0
ASPN WILD-TYPE 38 94 42 88 80
'ASPN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S5912.  Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ASPN MUTATED 0 1 2 0 3
ASPN WILD-TYPE 26 78 71 82 55
'ASPN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S5913.  Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ASPN MUTATED 1 3 1 1
ASPN WILD-TYPE 126 48 70 68
'ASPN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.76

Table S5914.  Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ASPN MUTATED 0 2 2 1 1
ASPN WILD-TYPE 84 83 83 68 46
'ASPN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0321 (Fisher's exact test), Q value = 0.11

Table S5915.  Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ASPN MUTATED 1 1 0 4
ASPN WILD-TYPE 94 73 121 76

Figure S2345.  Get High-res Image Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ASPN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.74

Table S5916.  Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ASPN MUTATED 1 2 2 1 0 0
ASPN WILD-TYPE 51 62 70 103 40 59
'ASPN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.65

Table S5917.  Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ASPN MUTATED 5 0 1
ASPN WILD-TYPE 212 75 98
'ASPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S5918.  Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ASPN MUTATED 3 0 1
ASPN WILD-TYPE 118 108 71
'ASPN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 0.21

Table S5919.  Gene #594: 'ASPN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ASPN MUTATED 4 0 0 0 0
ASPN WILD-TYPE 84 66 45 55 47
'PHACTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S5920.  Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PHACTR1 MUTATED 1 8 1 0
PHACTR1 WILD-TYPE 203 129 46 3

Figure S2346.  Get High-res Image Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PHACTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.2

Table S5921.  Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PHACTR1 MUTATED 0 5 0 1 0
PHACTR1 WILD-TYPE 39 91 44 87 80
'PHACTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 0.86

Table S5922.  Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PHACTR1 MUTATED 0 2 3 2 3
PHACTR1 WILD-TYPE 26 77 70 80 55
'PHACTR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00385 (Fisher's exact test), Q value = 0.033

Table S5923.  Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PHACTR1 MUTATED 1 6 1 2
PHACTR1 WILD-TYPE 126 45 70 67

Figure S2347.  Get High-res Image Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHACTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.08

Table S5924.  Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PHACTR1 MUTATED 0 3 3 0 4
PHACTR1 WILD-TYPE 84 82 82 69 43

Figure S2348.  Get High-res Image Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PHACTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00599 (Fisher's exact test), Q value = 0.043

Table S5925.  Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PHACTR1 MUTATED 1 4 0 5
PHACTR1 WILD-TYPE 94 70 121 75

Figure S2349.  Get High-res Image Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0501 (Fisher's exact test), Q value = 0.14

Table S5926.  Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PHACTR1 MUTATED 4 3 0 2 1 0
PHACTR1 WILD-TYPE 48 61 72 102 39 59
'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.71

Table S5927.  Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PHACTR1 MUTATED 7 2 1
PHACTR1 WILD-TYPE 210 73 98
'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 0.92

Table S5928.  Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PHACTR1 MUTATED 2 2 2
PHACTR1 WILD-TYPE 119 106 70
'PHACTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S5929.  Gene #595: 'PHACTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PHACTR1 MUTATED 1 1 0 1 3
PHACTR1 WILD-TYPE 87 65 45 54 44
'DNAJB13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S5930.  Gene #596: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DNAJB13 MUTATED 1 5 0 0
DNAJB13 WILD-TYPE 203 132 47 3
'DNAJB13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.61

Table S5931.  Gene #596: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DNAJB13 MUTATED 0 3 1 1 0
DNAJB13 WILD-TYPE 39 93 43 87 80
'DNAJB13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S5932.  Gene #596: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DNAJB13 MUTATED 0 2 3 0 1
DNAJB13 WILD-TYPE 26 77 70 82 57
'DNAJB13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.27

Table S5933.  Gene #596: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DNAJB13 MUTATED 1 3 1 1
DNAJB13 WILD-TYPE 126 48 70 68
'DNAJB13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 0.84

Table S5934.  Gene #596: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DNAJB13 MUTATED 1 2 2 0 0
DNAJB13 WILD-TYPE 83 83 83 69 47
'DNAJB13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S5935.  Gene #596: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DNAJB13 MUTATED 0 1 1 3
DNAJB13 WILD-TYPE 95 73 120 77
'DNAJB13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S5936.  Gene #596: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DNAJB13 MUTATED 1 1 1 1 1 1
DNAJB13 WILD-TYPE 51 63 71 103 39 58
'DNAJB13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.72

Table S5937.  Gene #596: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DNAJB13 MUTATED 4 0 2
DNAJB13 WILD-TYPE 213 75 97
'DNAJB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 0.9

Table S5938.  Gene #596: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DNAJB13 MUTATED 3 1 1
DNAJB13 WILD-TYPE 118 107 71
'DNAJB13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S5939.  Gene #596: 'DNAJB13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DNAJB13 MUTATED 2 0 0 1 2
DNAJB13 WILD-TYPE 86 66 45 54 45
'KDM3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.075

Table S5940.  Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KDM3B MUTATED 5 14 1 0
KDM3B WILD-TYPE 199 123 46 3

Figure S2350.  Get High-res Image Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KDM3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S5941.  Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KDM3B MUTATED 1 8 1 1 5
KDM3B WILD-TYPE 38 88 43 87 75
'KDM3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.14

Table S5942.  Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KDM3B MUTATED 4 5 6 1 2
KDM3B WILD-TYPE 22 74 67 81 56

Figure S2351.  Get High-res Image Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KDM3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S5943.  Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KDM3B MUTATED 6 8 3 1
KDM3B WILD-TYPE 121 43 68 68

Figure S2352.  Get High-res Image Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KDM3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.18

Table S5944.  Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KDM3B MUTATED 2 3 9 1 3
KDM3B WILD-TYPE 82 82 76 68 44
'KDM3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S5945.  Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KDM3B MUTATED 5 4 3 6
KDM3B WILD-TYPE 90 70 118 74
'KDM3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 0.55

Table S5946.  Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KDM3B MUTATED 4 6 4 3 1 2
KDM3B WILD-TYPE 48 58 68 101 39 57
'KDM3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 0.41

Table S5947.  Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KDM3B MUTATED 14 4 2
KDM3B WILD-TYPE 203 71 97
'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S5948.  Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KDM3B MUTATED 6 3 5
KDM3B WILD-TYPE 115 105 67
'KDM3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.31

Table S5949.  Gene #597: 'KDM3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KDM3B MUTATED 3 4 3 0 4
KDM3B WILD-TYPE 85 62 42 55 43
'PDCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.16

Table S5950.  Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PDCD1 MUTATED 0 4 0 0
PDCD1 WILD-TYPE 204 133 47 3
'PDCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.17

Table S5951.  Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PDCD1 MUTATED 0 4 0 0 0
PDCD1 WILD-TYPE 39 92 44 88 80
'PDCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.911 (Fisher's exact test), Q value = 0.95

Table S5952.  Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PDCD1 MUTATED 0 1 0 1 1
PDCD1 WILD-TYPE 26 78 73 81 57
'PDCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.13

Table S5953.  Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PDCD1 MUTATED 0 2 0 1
PDCD1 WILD-TYPE 127 49 71 68

Figure S2353.  Get High-res Image Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PDCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.16

Table S5954.  Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PDCD1 MUTATED 0 1 4 0 0
PDCD1 WILD-TYPE 84 84 81 69 47
'PDCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S5955.  Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PDCD1 MUTATED 0 1 1 3
PDCD1 WILD-TYPE 95 73 120 77
'PDCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.33

Table S5956.  Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PDCD1 MUTATED 2 1 1 0 1 0
PDCD1 WILD-TYPE 50 63 71 104 39 59
'PDCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S5957.  Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PDCD1 MUTATED 4 1 0
PDCD1 WILD-TYPE 213 74 99
'PDCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5958.  Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PDCD1 MUTATED 2 1 1
PDCD1 WILD-TYPE 119 107 71
'PDCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S5959.  Gene #598: 'PDCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PDCD1 MUTATED 2 0 0 0 2
PDCD1 WILD-TYPE 86 66 45 55 45
'SYCP2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.1

Table S5960.  Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SYCP2L MUTATED 2 9 2 0
SYCP2L WILD-TYPE 202 128 45 3

Figure S2354.  Get High-res Image Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SYCP2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.55

Table S5961.  Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SYCP2L MUTATED 0 5 1 1 3
SYCP2L WILD-TYPE 39 91 43 87 77
'SYCP2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S5962.  Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SYCP2L MUTATED 0 4 1 2 4
SYCP2L WILD-TYPE 26 75 72 80 54
'SYCP2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.49

Table S5963.  Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SYCP2L MUTATED 3 4 2 2
SYCP2L WILD-TYPE 124 47 69 67
'SYCP2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.58

Table S5964.  Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SYCP2L MUTATED 1 2 5 3 2
SYCP2L WILD-TYPE 83 83 80 66 45
'SYCP2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S5965.  Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SYCP2L MUTATED 7 1 2 3
SYCP2L WILD-TYPE 88 73 119 77
'SYCP2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.12

Table S5966.  Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SYCP2L MUTATED 4 5 0 3 0 1
SYCP2L WILD-TYPE 48 59 72 101 40 58

Figure S2355.  Get High-res Image Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SYCP2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S5967.  Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SYCP2L MUTATED 8 2 3
SYCP2L WILD-TYPE 209 73 96
'SYCP2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S5968.  Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SYCP2L MUTATED 4 4 2
SYCP2L WILD-TYPE 117 104 70
'SYCP2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S5969.  Gene #599: 'SYCP2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SYCP2L MUTATED 2 1 2 2 3
SYCP2L WILD-TYPE 86 65 43 53 44
'RNF111 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00688 (Fisher's exact test), Q value = 0.046

Table S5970.  Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RNF111 MUTATED 1 9 1 0
RNF111 WILD-TYPE 203 128 46 3

Figure S2356.  Get High-res Image Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNF111 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S5971.  Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RNF111 MUTATED 1 4 0 0 1
RNF111 WILD-TYPE 38 92 44 88 79
'RNF111 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S5972.  Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RNF111 MUTATED 1 3 3 0 4
RNF111 WILD-TYPE 25 76 70 82 54
'RNF111 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00171 (Fisher's exact test), Q value = 0.021

Table S5973.  Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RNF111 MUTATED 2 7 1 1
RNF111 WILD-TYPE 125 44 70 68

Figure S2357.  Get High-res Image Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RNF111 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S5974.  Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RNF111 MUTATED 0 2 4 1 3
RNF111 WILD-TYPE 84 83 81 68 44
'RNF111 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.032 (Fisher's exact test), Q value = 0.11

Table S5975.  Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RNF111 MUTATED 1 2 1 6
RNF111 WILD-TYPE 94 72 120 74

Figure S2358.  Get High-res Image Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RNF111 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00316 (Fisher's exact test), Q value = 0.03

Table S5976.  Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RNF111 MUTATED 3 6 0 1 1 0
RNF111 WILD-TYPE 49 58 72 103 39 59

Figure S2359.  Get High-res Image Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNF111 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S5977.  Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RNF111 MUTATED 9 1 1
RNF111 WILD-TYPE 208 74 98
'RNF111 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S5978.  Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RNF111 MUTATED 4 0 2
RNF111 WILD-TYPE 117 108 70
'RNF111 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S5979.  Gene #600: 'RNF111 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RNF111 MUTATED 3 0 2 0 1
RNF111 WILD-TYPE 85 66 43 55 46
'OPLAH MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S5980.  Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OPLAH MUTATED 2 20 1 0
OPLAH WILD-TYPE 202 117 46 3

Figure S2360.  Get High-res Image Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OPLAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.0078

Table S5981.  Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OPLAH MUTATED 0 13 3 1 1
OPLAH WILD-TYPE 39 83 41 87 79

Figure S2361.  Get High-res Image Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OPLAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.15

Table S5982.  Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OPLAH MUTATED 2 4 8 1 6
OPLAH WILD-TYPE 24 75 65 81 52
'OPLAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0044

Table S5983.  Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OPLAH MUTATED 5 12 2 2
OPLAH WILD-TYPE 122 39 69 67

Figure S2362.  Get High-res Image Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OPLAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.12

Table S5984.  Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OPLAH MUTATED 2 5 10 1 4
OPLAH WILD-TYPE 82 80 75 68 43

Figure S2363.  Get High-res Image Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OPLAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00092 (Fisher's exact test), Q value = 0.015

Table S5985.  Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OPLAH MUTATED 3 3 3 13
OPLAH WILD-TYPE 92 71 118 67

Figure S2364.  Get High-res Image Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OPLAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.63

Table S5986.  Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OPLAH MUTATED 5 6 4 4 2 2
OPLAH WILD-TYPE 47 58 68 100 38 57
'OPLAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.6

Table S5987.  Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OPLAH MUTATED 16 3 4
OPLAH WILD-TYPE 201 72 95
'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S5988.  Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OPLAH MUTATED 8 4 6
OPLAH WILD-TYPE 113 104 66
'OPLAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.13

Table S5989.  Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OPLAH MUTATED 7 2 1 1 7
OPLAH WILD-TYPE 81 64 44 54 40

Figure S2365.  Get High-res Image Gene #601: 'OPLAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DYX1C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.1

Table S5990.  Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DYX1C1 MUTATED 2 9 1 0
DYX1C1 WILD-TYPE 202 128 46 3

Figure S2366.  Get High-res Image Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DYX1C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S5991.  Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DYX1C1 MUTATED 2 6 0 1 1
DYX1C1 WILD-TYPE 37 90 44 87 79
'DYX1C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.35

Table S5992.  Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DYX1C1 MUTATED 0 3 4 0 2
DYX1C1 WILD-TYPE 26 76 69 82 56
'DYX1C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0025 (Fisher's exact test), Q value = 0.026

Table S5993.  Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DYX1C1 MUTATED 1 6 1 1
DYX1C1 WILD-TYPE 126 45 70 68

Figure S2367.  Get High-res Image Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DYX1C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.57

Table S5994.  Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DYX1C1 MUTATED 1 3 5 1 1
DYX1C1 WILD-TYPE 83 82 80 68 46
'DYX1C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 0.77

Table S5995.  Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DYX1C1 MUTATED 3 3 2 3
DYX1C1 WILD-TYPE 92 71 119 77
'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S5996.  Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DYX1C1 MUTATED 3 4 1 3 0 1
DYX1C1 WILD-TYPE 49 60 71 101 40 58
'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S5997.  Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DYX1C1 MUTATED 8 3 1
DYX1C1 WILD-TYPE 209 72 98
'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 0.21

Table S5998.  Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DYX1C1 MUTATED 2 2 5
DYX1C1 WILD-TYPE 119 106 67
'DYX1C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S5999.  Gene #602: 'DYX1C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DYX1C1 MUTATED 3 2 2 0 2
DYX1C1 WILD-TYPE 85 64 43 55 45
'RSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S6000.  Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RSF1 MUTATED 4 9 2 0
RSF1 WILD-TYPE 200 128 45 3
'RSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00761 (Fisher's exact test), Q value = 0.049

Table S6001.  Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RSF1 MUTATED 3 2 4 1 0
RSF1 WILD-TYPE 36 94 40 87 80

Figure S2368.  Get High-res Image Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RSF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S6002.  Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RSF1 MUTATED 0 5 3 1 5
RSF1 WILD-TYPE 26 74 70 81 53
'RSF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.11

Table S6003.  Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RSF1 MUTATED 3 6 4 1
RSF1 WILD-TYPE 124 45 67 68

Figure S2369.  Get High-res Image Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.62

Table S6004.  Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RSF1 MUTATED 2 2 6 3 1
RSF1 WILD-TYPE 82 83 79 66 46
'RSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S6005.  Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RSF1 MUTATED 5 2 2 5
RSF1 WILD-TYPE 90 72 119 75
'RSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 0.19

Table S6006.  Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RSF1 MUTATED 1 7 2 2 2 1
RSF1 WILD-TYPE 51 57 70 102 38 58
'RSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.29

Table S6007.  Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RSF1 MUTATED 12 2 1
RSF1 WILD-TYPE 205 73 98
'RSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0766 (Fisher's exact test), Q value = 0.19

Table S6008.  Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RSF1 MUTATED 4 0 3
RSF1 WILD-TYPE 117 108 69
'RSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0813 (Fisher's exact test), Q value = 0.19

Table S6009.  Gene #603: 'RSF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RSF1 MUTATED 2 0 3 0 2
RSF1 WILD-TYPE 86 66 42 55 45
'PRICKLE4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.091

Table S6010.  Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRICKLE4 MUTATED 0 4 2 0
PRICKLE4 WILD-TYPE 204 133 45 3

Figure S2370.  Get High-res Image Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PRICKLE4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.57

Table S6011.  Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PRICKLE4 MUTATED 1 1 0 0 1
PRICKLE4 WILD-TYPE 38 95 44 88 79
'PRICKLE4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S6012.  Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRICKLE4 MUTATED 1 2 1 0 2
PRICKLE4 WILD-TYPE 25 77 72 82 56
'PRICKLE4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S6013.  Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRICKLE4 MUTATED 2 2 2 0
PRICKLE4 WILD-TYPE 125 49 69 69
'PRICKLE4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.4

Table S6014.  Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRICKLE4 MUTATED 0 1 1 3 1
PRICKLE4 WILD-TYPE 84 84 84 66 46
'PRICKLE4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S6015.  Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRICKLE4 MUTATED 4 1 1 0
PRICKLE4 WILD-TYPE 91 73 120 80
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00096 (Fisher's exact test), Q value = 0.015

Table S6016.  Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRICKLE4 MUTATED 0 5 0 0 1 0
PRICKLE4 WILD-TYPE 52 59 72 104 39 59

Figure S2371.  Get High-res Image Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S6017.  Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRICKLE4 MUTATED 5 1 0
PRICKLE4 WILD-TYPE 212 74 99
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S6018.  Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PRICKLE4 MUTATED 1 0 2
PRICKLE4 WILD-TYPE 120 108 70
'PRICKLE4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 0.11

Table S6019.  Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PRICKLE4 MUTATED 0 0 2 0 1
PRICKLE4 WILD-TYPE 88 66 43 55 46

Figure S2372.  Get High-res Image Gene #604: 'PRICKLE4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ANTXR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.3

Table S6020.  Gene #605: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ANTXR1 MUTATED 3 7 0 0
ANTXR1 WILD-TYPE 201 130 47 3
'ANTXR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S6021.  Gene #605: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ANTXR1 MUTATED 1 6 0 1 1
ANTXR1 WILD-TYPE 38 90 44 87 79
'ANTXR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.61

Table S6022.  Gene #605: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ANTXR1 MUTATED 1 1 2 1 3
ANTXR1 WILD-TYPE 25 78 71 81 55
'ANTXR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S6023.  Gene #605: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ANTXR1 MUTATED 2 3 1 2
ANTXR1 WILD-TYPE 125 48 70 67
'ANTXR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S6024.  Gene #605: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ANTXR1 MUTATED 1 1 4 3 1
ANTXR1 WILD-TYPE 83 84 81 66 46
'ANTXR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S6025.  Gene #605: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ANTXR1 MUTATED 5 2 1 2
ANTXR1 WILD-TYPE 90 72 120 78
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.76

Table S6026.  Gene #605: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ANTXR1 MUTATED 2 3 2 1 1 1
ANTXR1 WILD-TYPE 50 61 70 103 39 58
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6027.  Gene #605: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ANTXR1 MUTATED 6 2 2
ANTXR1 WILD-TYPE 211 73 97
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S6028.  Gene #605: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ANTXR1 MUTATED 2 2 4
ANTXR1 WILD-TYPE 119 106 68
'ANTXR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.895 (Fisher's exact test), Q value = 0.93

Table S6029.  Gene #605: 'ANTXR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ANTXR1 MUTATED 3 1 2 1 1
ANTXR1 WILD-TYPE 85 65 43 54 46
'DNAJA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00062 (Fisher's exact test), Q value = 0.012

Table S6030.  Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DNAJA1 MUTATED 0 9 0 0
DNAJA1 WILD-TYPE 204 128 47 3

Figure S2373.  Get High-res Image Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAJA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.1

Table S6031.  Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DNAJA1 MUTATED 0 6 0 0 1
DNAJA1 WILD-TYPE 39 90 44 88 79

Figure S2374.  Get High-res Image Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DNAJA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0884 (Fisher's exact test), Q value = 0.2

Table S6032.  Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DNAJA1 MUTATED 2 1 3 0 2
DNAJA1 WILD-TYPE 24 78 70 82 56
'DNAJA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0599 (Fisher's exact test), Q value = 0.16

Table S6033.  Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DNAJA1 MUTATED 3 4 1 0
DNAJA1 WILD-TYPE 124 47 70 69
'DNAJA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S6034.  Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DNAJA1 MUTATED 0 1 4 3 1
DNAJA1 WILD-TYPE 84 84 81 66 46
'DNAJA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0367 (Fisher's exact test), Q value = 0.12

Table S6035.  Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DNAJA1 MUTATED 3 0 1 5
DNAJA1 WILD-TYPE 92 74 120 75

Figure S2375.  Get High-res Image Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DNAJA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00558 (Fisher's exact test), Q value = 0.041

Table S6036.  Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DNAJA1 MUTATED 4 4 0 1 0 0
DNAJA1 WILD-TYPE 48 60 72 103 40 59

Figure S2376.  Get High-res Image Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAJA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S6037.  Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DNAJA1 MUTATED 7 0 2
DNAJA1 WILD-TYPE 210 75 97
'DNAJA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S6038.  Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DNAJA1 MUTATED 2 1 3
DNAJA1 WILD-TYPE 119 107 69
'DNAJA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0423 (Fisher's exact test), Q value = 0.13

Table S6039.  Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DNAJA1 MUTATED 1 0 2 0 3
DNAJA1 WILD-TYPE 87 66 43 55 44

Figure S2377.  Get High-res Image Gene #606: 'DNAJA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C11ORF80 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.48

Table S6040.  Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C11ORF80 MUTATED 2 4 0 0
C11ORF80 WILD-TYPE 202 133 47 3
'C11ORF80 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.085

Table S6041.  Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C11ORF80 MUTATED 0 5 0 0 0
C11ORF80 WILD-TYPE 39 91 44 88 80

Figure S2378.  Get High-res Image Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C11ORF80 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00777 (Fisher's exact test), Q value = 0.049

Table S6042.  Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C11ORF80 MUTATED 0 5 0 0 0
C11ORF80 WILD-TYPE 26 74 73 82 58

Figure S2379.  Get High-res Image Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C11ORF80 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S6043.  Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C11ORF80 MUTATED 0 3 2 0
C11ORF80 WILD-TYPE 127 48 69 69

Figure S2380.  Get High-res Image Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C11ORF80 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00948 (Fisher's exact test), Q value = 0.055

Table S6044.  Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C11ORF80 MUTATED 0 0 4 0 2
C11ORF80 WILD-TYPE 84 85 81 69 45

Figure S2381.  Get High-res Image Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C11ORF80 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S6045.  Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C11ORF80 MUTATED 0 0 0 6
C11ORF80 WILD-TYPE 95 74 121 74

Figure S2382.  Get High-res Image Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C11ORF80 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S6046.  Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C11ORF80 MUTATED 1 1 3 1 0 0
C11ORF80 WILD-TYPE 51 63 69 103 40 59
'C11ORF80 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S6047.  Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C11ORF80 MUTATED 6 0 0
C11ORF80 WILD-TYPE 211 75 99
'C11ORF80 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.57

Table S6048.  Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C11ORF80 MUTATED 3 1 0
C11ORF80 WILD-TYPE 118 107 72
'C11ORF80 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S6049.  Gene #607: 'C11ORF80 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C11ORF80 MUTATED 2 0 0 0 2
C11ORF80 WILD-TYPE 86 66 45 55 45
'CLCA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S6050.  Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CLCA4 MUTATED 4 12 0 0
CLCA4 WILD-TYPE 200 125 47 3

Figure S2383.  Get High-res Image Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CLCA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S6051.  Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CLCA4 MUTATED 0 8 2 2 2
CLCA4 WILD-TYPE 39 88 42 86 78
'CLCA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0931 (Fisher's exact test), Q value = 0.21

Table S6052.  Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CLCA4 MUTATED 0 9 3 2 2
CLCA4 WILD-TYPE 26 70 70 80 56
'CLCA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00022 (Fisher's exact test), Q value = 0.0065

Table S6053.  Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CLCA4 MUTATED 0 7 5 4
CLCA4 WILD-TYPE 127 44 66 65

Figure S2384.  Get High-res Image Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CLCA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0073

Table S6054.  Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CLCA4 MUTATED 2 2 12 0 1
CLCA4 WILD-TYPE 82 83 73 69 46

Figure S2385.  Get High-res Image Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CLCA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0581 (Fisher's exact test), Q value = 0.16

Table S6055.  Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CLCA4 MUTATED 1 5 4 7
CLCA4 WILD-TYPE 94 69 117 73
'CLCA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.17

Table S6056.  Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CLCA4 MUTATED 4 6 3 1 2 1
CLCA4 WILD-TYPE 48 58 69 103 38 58
'CLCA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S6057.  Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CLCA4 MUTATED 13 2 2
CLCA4 WILD-TYPE 204 73 97
'CLCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0369 (Fisher's exact test), Q value = 0.12

Table S6058.  Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CLCA4 MUTATED 6 1 6
CLCA4 WILD-TYPE 115 107 66

Figure S2386.  Get High-res Image Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CLCA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0763 (Fisher's exact test), Q value = 0.18

Table S6059.  Gene #608: 'CLCA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CLCA4 MUTATED 5 0 4 1 3
CLCA4 WILD-TYPE 83 66 41 54 44
'ANAPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S6060.  Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ANAPC1 MUTATED 1 14 1 0
ANAPC1 WILD-TYPE 203 123 46 3

Figure S2387.  Get High-res Image Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANAPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00947 (Fisher's exact test), Q value = 0.055

Table S6061.  Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ANAPC1 MUTATED 1 7 4 0 1
ANAPC1 WILD-TYPE 38 89 40 88 79

Figure S2388.  Get High-res Image Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANAPC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.18

Table S6062.  Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ANAPC1 MUTATED 1 6 4 0 4
ANAPC1 WILD-TYPE 25 73 69 82 54
'ANAPC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S6063.  Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ANAPC1 MUTATED 1 9 4 1
ANAPC1 WILD-TYPE 126 42 67 68

Figure S2389.  Get High-res Image Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ANAPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.018

Table S6064.  Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ANAPC1 MUTATED 1 2 10 0 1
ANAPC1 WILD-TYPE 83 83 75 69 46

Figure S2390.  Get High-res Image Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ANAPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00048 (Fisher's exact test), Q value = 0.01

Table S6065.  Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ANAPC1 MUTATED 1 1 2 10
ANAPC1 WILD-TYPE 94 73 119 70

Figure S2391.  Get High-res Image Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.06

Table S6066.  Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ANAPC1 MUTATED 6 5 3 1 0 1
ANAPC1 WILD-TYPE 46 59 69 103 40 58

Figure S2392.  Get High-res Image Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.73

Table S6067.  Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ANAPC1 MUTATED 11 2 3
ANAPC1 WILD-TYPE 206 73 96
'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S6068.  Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ANAPC1 MUTATED 4 2 5
ANAPC1 WILD-TYPE 117 106 67
'ANAPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S6069.  Gene #609: 'ANAPC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ANAPC1 MUTATED 6 1 1 0 3
ANAPC1 WILD-TYPE 82 65 44 55 44
'SYT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.17

Table S6070.  Gene #610: 'SYT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SYT4 MUTATED 3 9 2 0
SYT4 WILD-TYPE 201 128 45 3
'SYT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S6071.  Gene #610: 'SYT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SYT4 MUTATED 1 5 2 0 3
SYT4 WILD-TYPE 38 91 42 88 77
'SYT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.65

Table S6072.  Gene #610: 'SYT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SYT4 MUTATED 1 3 1 3 4
SYT4 WILD-TYPE 25 76 72 79 54
'SYT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.58

Table S6073.  Gene #610: 'SYT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SYT4 MUTATED 3 3 2 4
SYT4 WILD-TYPE 124 48 69 65
'SYT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S6074.  Gene #610: 'SYT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SYT4 MUTATED 1 5 4 3 1
SYT4 WILD-TYPE 83 80 81 66 46
'SYT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.479 (Fisher's exact test), Q value = 0.59

Table S6075.  Gene #610: 'SYT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SYT4 MUTATED 2 5 4 3
SYT4 WILD-TYPE 93 69 117 77
'SYT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S6076.  Gene #610: 'SYT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SYT4 MUTATED 1 5 3 3 2 0
SYT4 WILD-TYPE 51 59 69 101 38 59
'SYT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S6077.  Gene #610: 'SYT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SYT4 MUTATED 11 2 1
SYT4 WILD-TYPE 206 73 98
'SYT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 0.95

Table S6078.  Gene #610: 'SYT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SYT4 MUTATED 5 3 2
SYT4 WILD-TYPE 116 105 70
'SYT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S6079.  Gene #610: 'SYT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SYT4 MUTATED 5 1 1 0 3
SYT4 WILD-TYPE 83 65 44 55 44
'TAF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00145 (Fisher's exact test), Q value = 0.019

Table S6080.  Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TAF6 MUTATED 2 12 0 0
TAF6 WILD-TYPE 202 125 47 3

Figure S2393.  Get High-res Image Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TAF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S6081.  Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TAF6 MUTATED 1 7 2 1 1
TAF6 WILD-TYPE 38 89 42 87 79
'TAF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S6082.  Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TAF6 MUTATED 1 3 4 1 4
TAF6 WILD-TYPE 25 76 69 81 54
'TAF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00389 (Fisher's exact test), Q value = 0.034

Table S6083.  Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TAF6 MUTATED 2 7 1 3
TAF6 WILD-TYPE 125 44 70 66

Figure S2394.  Get High-res Image Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TAF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0649 (Fisher's exact test), Q value = 0.17

Table S6084.  Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TAF6 MUTATED 1 3 8 1 1
TAF6 WILD-TYPE 83 82 77 68 46
'TAF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0725 (Fisher's exact test), Q value = 0.18

Table S6085.  Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TAF6 MUTATED 2 3 2 7
TAF6 WILD-TYPE 93 71 119 73
'TAF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S6086.  Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TAF6 MUTATED 4 4 1 2 2 1
TAF6 WILD-TYPE 48 60 71 102 38 58
'TAF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S6087.  Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TAF6 MUTATED 10 2 2
TAF6 WILD-TYPE 207 73 97
'TAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S6088.  Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TAF6 MUTATED 5 2 4
TAF6 WILD-TYPE 116 106 68
'TAF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S6089.  Gene #611: 'TAF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TAF6 MUTATED 5 0 2 1 3
TAF6 WILD-TYPE 83 66 43 54 44
'C9ORF41 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0309 (Fisher's exact test), Q value = 0.11

Table S6090.  Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C9ORF41 MUTATED 0 5 0 0
C9ORF41 WILD-TYPE 204 132 47 3

Figure S2395.  Get High-res Image Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S6091.  Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C9ORF41 MUTATED 0 3 1 0 0
C9ORF41 WILD-TYPE 39 93 43 88 80
'C9ORF41 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.89

Table S6092.  Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C9ORF41 MUTATED 0 1 2 1 0
C9ORF41 WILD-TYPE 26 78 71 81 58
'C9ORF41 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 0.21

Table S6093.  Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C9ORF41 MUTATED 0 2 1 1
C9ORF41 WILD-TYPE 127 49 70 68
'C9ORF41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.1

Table S6094.  Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C9ORF41 MUTATED 0 0 3 0 2
C9ORF41 WILD-TYPE 84 85 82 69 45

Figure S2396.  Get High-res Image Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C9ORF41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.46

Table S6095.  Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C9ORF41 MUTATED 2 1 0 2
C9ORF41 WILD-TYPE 93 73 121 78
'C9ORF41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S6096.  Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C9ORF41 MUTATED 1 2 1 0 1 0
C9ORF41 WILD-TYPE 51 62 71 104 39 59
'C9ORF41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6097.  Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C9ORF41 MUTATED 3 1 1
C9ORF41 WILD-TYPE 214 74 98
'C9ORF41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S6098.  Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C9ORF41 MUTATED 1 0 2
C9ORF41 WILD-TYPE 120 108 70
'C9ORF41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S6099.  Gene #612: 'C9ORF41 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C9ORF41 MUTATED 3 0 0 0 0
C9ORF41 WILD-TYPE 85 66 45 55 47
'MARCH7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00992 (Fisher's exact test), Q value = 0.056

Table S6100.  Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MARCH7 MUTATED 0 6 0 0
MARCH7 WILD-TYPE 204 131 47 3

Figure S2397.  Get High-res Image Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MARCH7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S6101.  Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MARCH7 MUTATED 0 2 2 0 0
MARCH7 WILD-TYPE 39 94 42 88 80
'MARCH7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S6102.  Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MARCH7 MUTATED 1 3 1 0 0
MARCH7 WILD-TYPE 25 76 72 82 58
'MARCH7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.68

Table S6103.  Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MARCH7 MUTATED 2 1 2 0
MARCH7 WILD-TYPE 125 50 69 69
'MARCH7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 0.84

Table S6104.  Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MARCH7 MUTATED 1 0 1 1 1
MARCH7 WILD-TYPE 83 85 84 68 46
'MARCH7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S6105.  Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MARCH7 MUTATED 2 0 0 2
MARCH7 WILD-TYPE 93 74 121 78
'MARCH7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S6106.  Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MARCH7 MUTATED 2 2 0 1 0 1
MARCH7 WILD-TYPE 50 62 72 103 40 58
'MARCH7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6107.  Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MARCH7 MUTATED 4 1 1
MARCH7 WILD-TYPE 213 74 98
'MARCH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S6108.  Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MARCH7 MUTATED 2 0 2
MARCH7 WILD-TYPE 119 108 70
'MARCH7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S6109.  Gene #613: 'MARCH7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MARCH7 MUTATED 0 1 1 0 2
MARCH7 WILD-TYPE 88 65 44 55 45
'TAPT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.62

Table S6110.  Gene #614: 'TAPT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TAPT1 MUTATED 2 3 1 0
TAPT1 WILD-TYPE 202 134 46 3
'TAPT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.77

Table S6111.  Gene #614: 'TAPT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TAPT1 MUTATED 0 3 0 1 1
TAPT1 WILD-TYPE 39 93 44 87 79
'TAPT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S6112.  Gene #614: 'TAPT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TAPT1 MUTATED 1 1 2 0 2
TAPT1 WILD-TYPE 25 78 71 82 56
'TAPT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0804 (Fisher's exact test), Q value = 0.19

Table S6113.  Gene #614: 'TAPT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TAPT1 MUTATED 3 3 0 0
TAPT1 WILD-TYPE 124 48 71 69
'TAPT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 0.82

Table S6114.  Gene #614: 'TAPT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TAPT1 MUTATED 1 1 3 1 0
TAPT1 WILD-TYPE 83 84 82 68 47
'TAPT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 0.78

Table S6115.  Gene #614: 'TAPT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TAPT1 MUTATED 2 0 2 2
TAPT1 WILD-TYPE 93 74 119 78
'TAPT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S6116.  Gene #614: 'TAPT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TAPT1 MUTATED 0 3 1 0 1 1
TAPT1 WILD-TYPE 52 61 71 104 39 58
'TAPT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.65

Table S6117.  Gene #614: 'TAPT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TAPT1 MUTATED 5 0 1
TAPT1 WILD-TYPE 212 75 98
'TAPT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.16

Table S6118.  Gene #614: 'TAPT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TAPT1 MUTATED 1 0 3
TAPT1 WILD-TYPE 120 108 69
'TAPT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S6119.  Gene #614: 'TAPT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TAPT1 MUTATED 0 0 2 1 1
TAPT1 WILD-TYPE 88 66 43 54 46
'SDAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.09

Table S6120.  Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SDAD1 MUTATED 1 7 0 0
SDAD1 WILD-TYPE 203 130 47 3

Figure S2398.  Get High-res Image Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SDAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.13

Table S6121.  Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SDAD1 MUTATED 0 4 2 0 0
SDAD1 WILD-TYPE 39 92 42 88 80

Figure S2399.  Get High-res Image Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SDAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 0.83

Table S6122.  Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SDAD1 MUTATED 0 2 3 1 2
SDAD1 WILD-TYPE 26 77 70 81 56
'SDAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0528 (Fisher's exact test), Q value = 0.15

Table S6123.  Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SDAD1 MUTATED 1 4 2 1
SDAD1 WILD-TYPE 126 47 69 68
'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S6124.  Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SDAD1 MUTATED 0 2 4 0 1
SDAD1 WILD-TYPE 84 83 81 69 46
'SDAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S6125.  Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SDAD1 MUTATED 1 2 0 4
SDAD1 WILD-TYPE 94 72 121 76

Figure S2400.  Get High-res Image Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S6126.  Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SDAD1 MUTATED 0 3 1 3 1 0
SDAD1 WILD-TYPE 52 61 71 101 39 59
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S6127.  Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SDAD1 MUTATED 6 2 0
SDAD1 WILD-TYPE 211 73 99
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.66

Table S6128.  Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SDAD1 MUTATED 1 1 2
SDAD1 WILD-TYPE 120 107 70
'SDAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S6129.  Gene #615: 'SDAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SDAD1 MUTATED 3 0 1 0 0
SDAD1 WILD-TYPE 85 66 44 55 47
'PPIAL4A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00196 (Fisher's exact test), Q value = 0.023

Table S6130.  Gene #616: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PPIAL4A MUTATED 0 0 3 0
PPIAL4A WILD-TYPE 204 137 44 3

Figure S2401.  Get High-res Image Gene #616: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPIAL4A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 0.38

Table S6131.  Gene #616: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PPIAL4A MUTATED 1 1 1 0 0
PPIAL4A WILD-TYPE 38 95 43 88 80
'PPIAL4A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S6132.  Gene #616: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PPIAL4A MUTATED 0 0 0 1 2
PPIAL4A WILD-TYPE 26 79 73 81 56
'PPIAL4A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0806 (Fisher's exact test), Q value = 0.19

Table S6133.  Gene #616: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PPIAL4A MUTATED 0 1 0 2
PPIAL4A WILD-TYPE 127 50 71 67
'PPIAL4A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.31

Table S6134.  Gene #616: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PPIAL4A MUTATED 1 0 2 0 0 0
PPIAL4A WILD-TYPE 51 64 70 104 40 59
'PPIAL4A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 0.83

Table S6135.  Gene #616: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PPIAL4A MUTATED 2 1 0
PPIAL4A WILD-TYPE 215 74 99
'PPIAL4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.57

Table S6136.  Gene #616: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PPIAL4A MUTATED 2 0 1
PPIAL4A WILD-TYPE 119 108 71
'PPIAL4A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S6137.  Gene #616: 'PPIAL4A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PPIAL4A MUTATED 2 0 0 0 1
PPIAL4A WILD-TYPE 86 66 45 55 46
'SCN10A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.082

Table S6138.  Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SCN10A MUTATED 12 22 5 0
SCN10A WILD-TYPE 192 115 42 3

Figure S2402.  Get High-res Image Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SCN10A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.009 (Fisher's exact test), Q value = 0.054

Table S6139.  Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SCN10A MUTATED 3 17 7 5 3
SCN10A WILD-TYPE 36 79 37 83 77

Figure S2403.  Get High-res Image Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SCN10A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S6140.  Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SCN10A MUTATED 1 12 10 5 6
SCN10A WILD-TYPE 25 67 63 77 52
'SCN10A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0312 (Fisher's exact test), Q value = 0.11

Table S6141.  Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SCN10A MUTATED 8 11 9 6
SCN10A WILD-TYPE 119 40 62 63

Figure S2404.  Get High-res Image Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SCN10A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S6142.  Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SCN10A MUTATED 7 7 14 6 3
SCN10A WILD-TYPE 77 78 71 63 44
'SCN10A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.734 (Fisher's exact test), Q value = 0.8

Table S6143.  Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SCN10A MUTATED 11 5 12 9
SCN10A WILD-TYPE 84 69 109 71
'SCN10A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.29

Table S6144.  Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SCN10A MUTATED 4 11 8 7 6 3
SCN10A WILD-TYPE 48 53 64 97 34 56
'SCN10A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S6145.  Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SCN10A MUTATED 27 6 6
SCN10A WILD-TYPE 190 69 93
'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.097

Table S6146.  Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SCN10A MUTATED 12 5 12
SCN10A WILD-TYPE 109 103 60

Figure S2405.  Get High-res Image Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SCN10A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S6147.  Gene #617: 'SCN10A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SCN10A MUTATED 8 4 6 3 8
SCN10A WILD-TYPE 80 62 39 52 39
'PSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0371 (Fisher's exact test), Q value = 0.12

Table S6148.  Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PSD MUTATED 4 11 3 0
PSD WILD-TYPE 200 126 44 3

Figure S2406.  Get High-res Image Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0067

Table S6149.  Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PSD MUTATED 3 10 4 0 0
PSD WILD-TYPE 36 86 40 88 80

Figure S2407.  Get High-res Image Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S6150.  Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PSD MUTATED 1 3 3 1 5
PSD WILD-TYPE 25 76 70 81 53
'PSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0461 (Fisher's exact test), Q value = 0.14

Table S6151.  Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PSD MUTATED 4 6 1 2
PSD WILD-TYPE 123 45 70 67

Figure S2408.  Get High-res Image Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0032 (Fisher's exact test), Q value = 0.03

Table S6152.  Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PSD MUTATED 1 1 11 3 2
PSD WILD-TYPE 83 84 74 66 45

Figure S2409.  Get High-res Image Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0082 (Fisher's exact test), Q value = 0.05

Table S6153.  Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PSD MUTATED 4 1 3 10
PSD WILD-TYPE 91 73 118 70

Figure S2410.  Get High-res Image Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00542 (Fisher's exact test), Q value = 0.04

Table S6154.  Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PSD MUTATED 6 4 6 1 1 0
PSD WILD-TYPE 46 60 66 103 39 59

Figure S2411.  Get High-res Image Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0015 (Fisher's exact test), Q value = 0.02

Table S6155.  Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PSD MUTATED 17 1 0
PSD WILD-TYPE 200 74 99

Figure S2412.  Get High-res Image Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.075

Table S6156.  Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PSD MUTATED 7 0 4
PSD WILD-TYPE 114 108 68

Figure S2413.  Get High-res Image Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S6157.  Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PSD MUTATED 7 0 1 0 3
PSD WILD-TYPE 81 66 44 55 44

Figure S2414.  Get High-res Image Gene #618: 'PSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PODN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.15

Table S6158.  Gene #619: 'PODN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PODN MUTATED 2 8 1 0
PODN WILD-TYPE 202 129 46 3
'PODN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 0.83

Table S6159.  Gene #619: 'PODN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PODN MUTATED 1 3 2 1 2
PODN WILD-TYPE 38 93 42 87 78
'PODN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.77

Table S6160.  Gene #619: 'PODN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PODN MUTATED 1 3 1 2 3
PODN WILD-TYPE 25 76 72 80 55
'PODN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6161.  Gene #619: 'PODN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PODN MUTATED 4 2 2 2
PODN WILD-TYPE 123 49 69 67
'PODN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.5

Table S6162.  Gene #619: 'PODN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PODN MUTATED 1 2 3 4 0
PODN WILD-TYPE 83 83 82 65 47
'PODN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 0.87

Table S6163.  Gene #619: 'PODN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PODN MUTATED 3 2 2 3
PODN WILD-TYPE 92 72 119 77
'PODN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S6164.  Gene #619: 'PODN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PODN MUTATED 1 4 1 5 1 0
PODN WILD-TYPE 51 60 71 99 39 59
'PODN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.62

Table S6165.  Gene #619: 'PODN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PODN MUTATED 9 1 2
PODN WILD-TYPE 208 74 97
'PODN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.62

Table S6166.  Gene #619: 'PODN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PODN MUTATED 2 4 3
PODN WILD-TYPE 119 104 69
'PODN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 0.91

Table S6167.  Gene #619: 'PODN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PODN MUTATED 2 3 1 1 2
PODN WILD-TYPE 86 63 44 54 45
'NUFIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.14

Table S6168.  Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NUFIP2 MUTATED 1 4 3 0
NUFIP2 WILD-TYPE 203 133 44 3

Figure S2415.  Get High-res Image Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NUFIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.41

Table S6169.  Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NUFIP2 MUTATED 0 4 1 1 0
NUFIP2 WILD-TYPE 39 92 43 87 80
'NUFIP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.16

Table S6170.  Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NUFIP2 MUTATED 0 1 5 0 2
NUFIP2 WILD-TYPE 26 78 68 82 56
'NUFIP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.43

Table S6171.  Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NUFIP2 MUTATED 5 2 0 1
NUFIP2 WILD-TYPE 122 49 71 68
'NUFIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.56

Table S6172.  Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NUFIP2 MUTATED 0 2 2 2 2
NUFIP2 WILD-TYPE 84 83 83 67 45
'NUFIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.64

Table S6173.  Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NUFIP2 MUTATED 2 2 1 3
NUFIP2 WILD-TYPE 93 72 120 77
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.88

Table S6174.  Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NUFIP2 MUTATED 1 2 1 3 1 0
NUFIP2 WILD-TYPE 51 62 71 101 39 59
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S6175.  Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NUFIP2 MUTATED 6 1 1
NUFIP2 WILD-TYPE 211 74 98
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.74

Table S6176.  Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NUFIP2 MUTATED 3 1 2
NUFIP2 WILD-TYPE 118 107 70
'NUFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S6177.  Gene #620: 'NUFIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NUFIP2 MUTATED 4 1 1 0 0
NUFIP2 WILD-TYPE 84 65 44 55 47
'FRYL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00206 (Fisher's exact test), Q value = 0.024

Table S6178.  Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FRYL MUTATED 7 17 0 0
FRYL WILD-TYPE 197 120 47 3

Figure S2416.  Get High-res Image Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FRYL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S6179.  Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FRYL MUTATED 1 8 2 5 1
FRYL WILD-TYPE 38 88 42 83 79
'FRYL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S6180.  Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FRYL MUTATED 2 8 5 2 5
FRYL WILD-TYPE 24 71 68 80 53
'FRYL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0971 (Fisher's exact test), Q value = 0.21

Table S6181.  Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FRYL MUTATED 6 8 4 4
FRYL WILD-TYPE 121 43 67 65
'FRYL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0945 (Fisher's exact test), Q value = 0.21

Table S6182.  Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FRYL MUTATED 2 4 10 2 3
FRYL WILD-TYPE 82 81 75 67 44
'FRYL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.11

Table S6183.  Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FRYL MUTATED 6 4 2 9
FRYL WILD-TYPE 89 70 119 71

Figure S2417.  Get High-res Image Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FRYL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00086 (Fisher's exact test), Q value = 0.014

Table S6184.  Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FRYL MUTATED 6 11 1 3 1 2
FRYL WILD-TYPE 46 53 71 101 39 57

Figure S2418.  Get High-res Image Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FRYL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0678 (Fisher's exact test), Q value = 0.17

Table S6185.  Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FRYL MUTATED 19 2 3
FRYL WILD-TYPE 198 73 96
'FRYL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.21

Table S6186.  Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FRYL MUTATED 8 2 6
FRYL WILD-TYPE 113 106 66
'FRYL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.056 (Fisher's exact test), Q value = 0.15

Table S6187.  Gene #621: 'FRYL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FRYL MUTATED 3 1 6 2 4
FRYL WILD-TYPE 85 65 39 53 43
'MYCN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.16

Table S6188.  Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MYCN MUTATED 1 6 0 0
MYCN WILD-TYPE 203 131 47 3
'MYCN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S6189.  Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MYCN MUTATED 0 5 1 0 1
MYCN WILD-TYPE 39 91 43 88 79
'MYCN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.49

Table S6190.  Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MYCN MUTATED 0 2 3 0 2
MYCN WILD-TYPE 26 77 70 82 56
'MYCN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.15

Table S6191.  Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MYCN MUTATED 1 4 1 1
MYCN WILD-TYPE 126 47 70 68
'MYCN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.076

Table S6192.  Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MYCN MUTATED 0 1 1 1 4
MYCN WILD-TYPE 84 84 84 68 43

Figure S2419.  Get High-res Image Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MYCN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S6193.  Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MYCN MUTATED 1 1 1 4
MYCN WILD-TYPE 94 73 120 76
'MYCN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.17

Table S6194.  Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MYCN MUTATED 3 2 1 0 1 0
MYCN WILD-TYPE 49 62 71 104 39 59
'MYCN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S6195.  Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MYCN MUTATED 6 1 0
MYCN WILD-TYPE 211 74 99
'MYCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 0.18

Table S6196.  Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MYCN MUTATED 4 0 3
MYCN WILD-TYPE 117 108 69
'MYCN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.11

Table S6197.  Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MYCN MUTATED 2 0 1 0 4
MYCN WILD-TYPE 86 66 44 55 43

Figure S2420.  Get High-res Image Gene #622: 'MYCN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TNK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.017

Table S6198.  Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TNK2 MUTATED 2 13 3 0
TNK2 WILD-TYPE 202 124 44 3

Figure S2421.  Get High-res Image Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TNK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0067

Table S6199.  Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TNK2 MUTATED 4 10 2 0 0
TNK2 WILD-TYPE 35 86 42 88 80

Figure S2422.  Get High-res Image Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TNK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0405 (Fisher's exact test), Q value = 0.13

Table S6200.  Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TNK2 MUTATED 3 4 5 0 3
TNK2 WILD-TYPE 23 75 68 82 55

Figure S2423.  Get High-res Image Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TNK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0563 (Fisher's exact test), Q value = 0.15

Table S6201.  Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TNK2 MUTATED 4 6 4 1
TNK2 WILD-TYPE 123 45 67 68
'TNK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.032 (Fisher's exact test), Q value = 0.11

Table S6202.  Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TNK2 MUTATED 2 2 10 2 1
TNK2 WILD-TYPE 82 83 75 67 46

Figure S2424.  Get High-res Image Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00152 (Fisher's exact test), Q value = 0.02

Table S6203.  Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TNK2 MUTATED 6 1 1 9
TNK2 WILD-TYPE 89 73 120 71

Figure S2425.  Get High-res Image Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 0.44

Table S6204.  Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TNK2 MUTATED 5 2 4 3 3 1
TNK2 WILD-TYPE 47 62 68 101 37 58
'TNK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.28

Table S6205.  Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TNK2 MUTATED 14 1 3
TNK2 WILD-TYPE 203 74 96
'TNK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.1

Table S6206.  Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TNK2 MUTATED 10 2 1
TNK2 WILD-TYPE 111 106 71

Figure S2426.  Get High-res Image Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TNK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00896 (Fisher's exact test), Q value = 0.053

Table S6207.  Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TNK2 MUTATED 8 1 0 0 4
TNK2 WILD-TYPE 80 65 45 55 43

Figure S2427.  Get High-res Image Gene #623: 'TNK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C2ORF42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 0.89

Table S6208.  Gene #624: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C2ORF42 MUTATED 5 5 1 0
C2ORF42 WILD-TYPE 199 132 46 3
'C2ORF42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S6209.  Gene #624: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C2ORF42 MUTATED 0 5 1 2 0
C2ORF42 WILD-TYPE 39 91 43 86 80
'C2ORF42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 0.56

Table S6210.  Gene #624: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C2ORF42 MUTATED 0 5 3 1 2
C2ORF42 WILD-TYPE 26 74 70 81 56
'C2ORF42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.74

Table S6211.  Gene #624: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C2ORF42 MUTATED 3 3 3 2
C2ORF42 WILD-TYPE 124 48 68 67
'C2ORF42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.41

Table S6212.  Gene #624: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C2ORF42 MUTATED 1 3 6 1 1
C2ORF42 WILD-TYPE 83 82 79 68 46
'C2ORF42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 0.48

Table S6213.  Gene #624: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C2ORF42 MUTATED 3 2 2 5
C2ORF42 WILD-TYPE 92 72 119 75
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.41

Table S6214.  Gene #624: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C2ORF42 MUTATED 1 5 3 2 0 1
C2ORF42 WILD-TYPE 51 59 69 102 40 58
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S6215.  Gene #624: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C2ORF42 MUTATED 10 1 1
C2ORF42 WILD-TYPE 207 74 98
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 0.83

Table S6216.  Gene #624: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C2ORF42 MUTATED 2 3 1
C2ORF42 WILD-TYPE 119 105 71
'C2ORF42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 0.43

Table S6217.  Gene #624: 'C2ORF42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C2ORF42 MUTATED 0 2 1 1 2
C2ORF42 WILD-TYPE 88 64 44 54 45
'ADCY10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S6218.  Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ADCY10 MUTATED 7 12 1 0
ADCY10 WILD-TYPE 197 125 46 3
'ADCY10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.35

Table S6219.  Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ADCY10 MUTATED 1 9 1 3 2
ADCY10 WILD-TYPE 38 87 43 85 78
'ADCY10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 0.64

Table S6220.  Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ADCY10 MUTATED 1 6 5 2 2
ADCY10 WILD-TYPE 25 73 68 80 56
'ADCY10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.013

Table S6221.  Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ADCY10 MUTATED 3 9 3 1
ADCY10 WILD-TYPE 124 42 68 68

Figure S2428.  Get High-res Image Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADCY10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S6222.  Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ADCY10 MUTATED 4 4 6 2 3
ADCY10 WILD-TYPE 80 81 79 67 44
'ADCY10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S6223.  Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ADCY10 MUTATED 7 2 4 6
ADCY10 WILD-TYPE 88 72 117 74
'ADCY10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.526 (Fisher's exact test), Q value = 0.63

Table S6224.  Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ADCY10 MUTATED 4 5 5 3 1 2
ADCY10 WILD-TYPE 48 59 67 101 39 57
'ADCY10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.75

Table S6225.  Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ADCY10 MUTATED 13 2 5
ADCY10 WILD-TYPE 204 73 94
'ADCY10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.63

Table S6226.  Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ADCY10 MUTATED 8 5 2
ADCY10 WILD-TYPE 113 103 70
'ADCY10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.744 (Fisher's exact test), Q value = 0.81

Table S6227.  Gene #625: 'ADCY10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ADCY10 MUTATED 5 2 2 2 4
ADCY10 WILD-TYPE 83 64 43 53 43
'QRFPR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S6228.  Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
QRFPR MUTATED 4 7 1 0
QRFPR WILD-TYPE 200 130 46 3
'QRFPR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S6229.  Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
QRFPR MUTATED 1 5 1 1 0
QRFPR WILD-TYPE 38 91 43 87 80
'QRFPR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S6230.  Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
QRFPR MUTATED 0 4 5 0 2
QRFPR WILD-TYPE 26 75 68 82 56
'QRFPR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 0.72

Table S6231.  Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
QRFPR MUTATED 5 3 2 1
QRFPR WILD-TYPE 122 48 69 68
'QRFPR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.58

Table S6232.  Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
QRFPR MUTATED 2 1 2 3 3
QRFPR WILD-TYPE 82 84 83 66 44
'QRFPR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.5

Table S6233.  Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
QRFPR MUTATED 5 1 2 3
QRFPR WILD-TYPE 90 73 119 77
'QRFPR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00674 (Fisher's exact test), Q value = 0.045

Table S6234.  Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
QRFPR MUTATED 3 6 2 0 0 1
QRFPR WILD-TYPE 49 58 70 104 40 58

Figure S2429.  Get High-res Image Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'QRFPR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S6235.  Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
QRFPR MUTATED 10 0 2
QRFPR WILD-TYPE 207 75 97
'QRFPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0637 (Fisher's exact test), Q value = 0.17

Table S6236.  Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
QRFPR MUTATED 5 0 3
QRFPR WILD-TYPE 116 108 69
'QRFPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0982 (Fisher's exact test), Q value = 0.21

Table S6237.  Gene #626: 'QRFPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
QRFPR MUTATED 2 0 1 1 4
QRFPR WILD-TYPE 86 66 44 54 43
'C19ORF26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.3

Table S6238.  Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C19ORF26 MUTATED 3 7 0 0
C19ORF26 WILD-TYPE 201 130 47 3
'C19ORF26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S6239.  Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C19ORF26 MUTATED 0 5 0 2 1
C19ORF26 WILD-TYPE 39 91 44 86 79
'C19ORF26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.67

Table S6240.  Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C19ORF26 MUTATED 1 2 3 2 0
C19ORF26 WILD-TYPE 25 77 70 80 58
'C19ORF26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.59

Table S6241.  Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C19ORF26 MUTATED 3 3 1 1
C19ORF26 WILD-TYPE 124 48 70 68
'C19ORF26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.12

Table S6242.  Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C19ORF26 MUTATED 0 4 5 0 1
C19ORF26 WILD-TYPE 84 81 80 69 46

Figure S2430.  Get High-res Image Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C19ORF26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.639 (Fisher's exact test), Q value = 0.72

Table S6243.  Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C19ORF26 MUTATED 2 3 2 3
C19ORF26 WILD-TYPE 93 71 119 77
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.43

Table S6244.  Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C19ORF26 MUTATED 1 4 0 2 1 2
C19ORF26 WILD-TYPE 51 60 72 102 39 57
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.88

Table S6245.  Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C19ORF26 MUTATED 6 1 3
C19ORF26 WILD-TYPE 211 74 96
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S6246.  Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C19ORF26 MUTATED 1 4 3
C19ORF26 WILD-TYPE 120 104 69
'C19ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.461 (Fisher's exact test), Q value = 0.57

Table S6247.  Gene #627: 'C19ORF26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C19ORF26 MUTATED 1 1 2 3 1
C19ORF26 WILD-TYPE 87 65 43 52 46
'SPANXC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.19

Table S6248.  Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SPANXC MUTATED 1 5 2 0
SPANXC WILD-TYPE 203 132 45 3
'SPANXC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.081 (Fisher's exact test), Q value = 0.19

Table S6249.  Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SPANXC MUTATED 0 4 1 0 0
SPANXC WILD-TYPE 39 92 43 88 80
'SPANXC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.57

Table S6250.  Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SPANXC MUTATED 0 3 2 0 1
SPANXC WILD-TYPE 26 76 71 82 57
'SPANXC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.002 (Fisher's exact test), Q value = 0.023

Table S6251.  Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SPANXC MUTATED 0 4 2 0
SPANXC WILD-TYPE 127 47 69 69

Figure S2431.  Get High-res Image Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SPANXC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00186 (Fisher's exact test), Q value = 0.022

Table S6252.  Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SPANXC MUTATED 0 0 6 0 2
SPANXC WILD-TYPE 84 85 79 69 45

Figure S2432.  Get High-res Image Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SPANXC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.005

Table S6253.  Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SPANXC MUTATED 1 0 0 7
SPANXC WILD-TYPE 94 74 121 73

Figure S2433.  Get High-res Image Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SPANXC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.14

Table S6254.  Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SPANXC MUTATED 2 3 3 0 0 0
SPANXC WILD-TYPE 50 61 69 104 40 59
'SPANXC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S6255.  Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SPANXC MUTATED 7 0 1
SPANXC WILD-TYPE 210 75 98
'SPANXC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S6256.  Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SPANXC MUTATED 1 0 2
SPANXC WILD-TYPE 120 108 70
'SPANXC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S6257.  Gene #628: 'SPANXC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SPANXC MUTATED 1 0 0 0 2
SPANXC WILD-TYPE 87 66 45 55 45
'XRN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00343 (Fisher's exact test), Q value = 0.032

Table S6258.  Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
XRN1 MUTATED 6 17 1 0
XRN1 WILD-TYPE 198 120 46 3

Figure S2434.  Get High-res Image Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'XRN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0425 (Fisher's exact test), Q value = 0.13

Table S6259.  Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
XRN1 MUTATED 0 10 2 2 2
XRN1 WILD-TYPE 39 86 42 86 78

Figure S2435.  Get High-res Image Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'XRN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S6260.  Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
XRN1 MUTATED 2 9 4 2 5
XRN1 WILD-TYPE 24 70 69 80 53
'XRN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.069 (Fisher's exact test), Q value = 0.17

Table S6261.  Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
XRN1 MUTATED 8 8 4 2
XRN1 WILD-TYPE 119 43 67 67
'XRN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S6262.  Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
XRN1 MUTATED 3 2 9 6 3
XRN1 WILD-TYPE 81 83 76 63 44
'XRN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S6263.  Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
XRN1 MUTATED 10 2 6 5
XRN1 WILD-TYPE 85 72 115 75
'XRN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.063

Table S6264.  Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
XRN1 MUTATED 5 10 1 4 1 3
XRN1 WILD-TYPE 47 54 71 100 39 56

Figure S2436.  Get High-res Image Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'XRN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S6265.  Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
XRN1 MUTATED 16 2 6
XRN1 WILD-TYPE 201 73 93
'XRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0585 (Fisher's exact test), Q value = 0.16

Table S6266.  Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
XRN1 MUTATED 3 3 7
XRN1 WILD-TYPE 118 105 65
'XRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.71

Table S6267.  Gene #629: 'XRN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
XRN1 MUTATED 4 1 3 2 3
XRN1 WILD-TYPE 84 65 42 53 44
'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.013

Table S6268.  Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SORBS2 MUTATED 3 16 2 0
SORBS2 WILD-TYPE 201 121 45 3

Figure S2437.  Get High-res Image Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00135 (Fisher's exact test), Q value = 0.019

Table S6269.  Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SORBS2 MUTATED 5 9 0 0 4
SORBS2 WILD-TYPE 34 87 44 88 76

Figure S2438.  Get High-res Image Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SORBS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.16

Table S6270.  Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SORBS2 MUTATED 4 2 6 2 2
SORBS2 WILD-TYPE 22 77 67 80 56
'SORBS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00933 (Fisher's exact test), Q value = 0.055

Table S6271.  Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SORBS2 MUTATED 4 8 2 2
SORBS2 WILD-TYPE 123 43 69 67

Figure S2439.  Get High-res Image Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.45

Table S6272.  Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SORBS2 MUTATED 3 3 9 4 2
SORBS2 WILD-TYPE 81 82 76 65 45
'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 0.18

Table S6273.  Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SORBS2 MUTATED 6 3 3 9
SORBS2 WILD-TYPE 89 71 118 71
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0266 (Fisher's exact test), Q value = 0.1

Table S6274.  Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SORBS2 MUTATED 7 6 3 2 2 1
SORBS2 WILD-TYPE 45 58 69 102 38 58

Figure S2440.  Get High-res Image Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0619 (Fisher's exact test), Q value = 0.16

Table S6275.  Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SORBS2 MUTATED 17 2 2
SORBS2 WILD-TYPE 200 73 97
'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.091

Table S6276.  Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SORBS2 MUTATED 10 1 5
SORBS2 WILD-TYPE 111 107 67

Figure S2441.  Get High-res Image Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0799 (Fisher's exact test), Q value = 0.19

Table S6277.  Gene #630: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SORBS2 MUTATED 5 1 3 1 6
SORBS2 WILD-TYPE 83 65 42 54 41
'LRP12 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-04 (Fisher's exact test), Q value = 0.006

Table S6278.  Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LRP12 MUTATED 5 21 4 0
LRP12 WILD-TYPE 199 116 43 3

Figure S2442.  Get High-res Image Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRP12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S6279.  Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LRP12 MUTATED 3 13 2 5 3
LRP12 WILD-TYPE 36 83 42 83 77
'LRP12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.13

Table S6280.  Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LRP12 MUTATED 3 6 9 1 5
LRP12 WILD-TYPE 23 73 64 81 53

Figure S2443.  Get High-res Image Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'LRP12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00119 (Fisher's exact test), Q value = 0.017

Table S6281.  Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LRP12 MUTATED 9 11 2 2
LRP12 WILD-TYPE 118 40 69 67

Figure S2444.  Get High-res Image Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 0.61

Table S6282.  Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LRP12 MUTATED 3 6 9 5 4
LRP12 WILD-TYPE 81 79 76 64 43
'LRP12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00876 (Fisher's exact test), Q value = 0.053

Table S6283.  Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LRP12 MUTATED 8 4 3 12
LRP12 WILD-TYPE 87 70 118 68

Figure S2445.  Get High-res Image Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00061 (Fisher's exact test), Q value = 0.012

Table S6284.  Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LRP12 MUTATED 8 7 8 1 5 1
LRP12 WILD-TYPE 44 57 64 103 35 58

Figure S2446.  Get High-res Image Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0419 (Fisher's exact test), Q value = 0.13

Table S6285.  Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LRP12 MUTATED 21 1 8
LRP12 WILD-TYPE 196 74 91

Figure S2447.  Get High-res Image Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LRP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S6286.  Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LRP12 MUTATED 12 4 6
LRP12 WILD-TYPE 109 104 66
'LRP12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0022 (Fisher's exact test), Q value = 0.024

Table S6287.  Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LRP12 MUTATED 8 2 3 0 9
LRP12 WILD-TYPE 80 64 42 55 38

Figure S2448.  Get High-res Image Gene #631: 'LRP12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S6288.  Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIF13A MUTATED 0 16 2 0
KIF13A WILD-TYPE 204 121 45 3

Figure S2449.  Get High-res Image Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIF13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.013

Table S6289.  Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIF13A MUTATED 0 10 3 0 1
KIF13A WILD-TYPE 39 86 41 88 79

Figure S2450.  Get High-res Image Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIF13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.543 (Fisher's exact test), Q value = 0.65

Table S6290.  Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIF13A MUTATED 1 5 6 2 4
KIF13A WILD-TYPE 25 74 67 80 54
'KIF13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S6291.  Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIF13A MUTATED 3 11 1 3
KIF13A WILD-TYPE 124 40 70 66

Figure S2451.  Get High-res Image Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S6292.  Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIF13A MUTATED 0 3 13 0 3
KIF13A WILD-TYPE 84 82 72 69 44

Figure S2452.  Get High-res Image Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIF13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00552 (Fisher's exact test), Q value = 0.041

Table S6293.  Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIF13A MUTATED 2 6 2 9
KIF13A WILD-TYPE 93 68 119 71

Figure S2453.  Get High-res Image Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.11

Table S6294.  Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIF13A MUTATED 3 8 4 3 1 0
KIF13A WILD-TYPE 49 56 68 101 39 59

Figure S2454.  Get High-res Image Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0705 (Fisher's exact test), Q value = 0.18

Table S6295.  Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIF13A MUTATED 15 3 1
KIF13A WILD-TYPE 202 72 98
'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S6296.  Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIF13A MUTATED 4 1 6
KIF13A WILD-TYPE 117 107 66

Figure S2455.  Get High-res Image Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIF13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0956 (Fisher's exact test), Q value = 0.21

Table S6297.  Gene #632: 'KIF13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIF13A MUTATED 3 1 3 0 4
KIF13A WILD-TYPE 85 65 42 55 43
'C6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S6298.  Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C6 MUTATED 4 7 0 0
C6 WILD-TYPE 200 130 47 3
'C6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 0.88

Table S6299.  Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C6 MUTATED 1 3 2 2 1
C6 WILD-TYPE 38 93 42 86 79
'C6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S6300.  Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C6 MUTATED 0 5 2 0 3
C6 WILD-TYPE 26 74 71 82 55
'C6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00806 (Fisher's exact test), Q value = 0.05

Table S6301.  Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C6 MUTATED 2 6 1 1
C6 WILD-TYPE 125 45 70 68

Figure S2456.  Get High-res Image Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0631 (Fisher's exact test), Q value = 0.17

Table S6302.  Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C6 MUTATED 2 0 6 1 2
C6 WILD-TYPE 82 85 79 68 45
'C6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S6303.  Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C6 MUTATED 2 1 2 6
C6 WILD-TYPE 93 73 119 74
'C6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.34

Table S6304.  Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C6 MUTATED 3 4 2 1 0 1
C6 WILD-TYPE 49 60 70 103 40 58
'C6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S6305.  Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C6 MUTATED 9 0 2
C6 WILD-TYPE 208 75 97
'C6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.903 (Fisher's exact test), Q value = 0.94

Table S6306.  Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C6 MUTATED 4 2 2
C6 WILD-TYPE 117 106 70
'C6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 0.62

Table S6307.  Gene #633: 'C6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C6 MUTATED 3 0 2 2 1
C6 WILD-TYPE 85 66 43 53 46
'HIVEP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.001 (Fisher's exact test), Q value = 0.016

Table S6308.  Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HIVEP3 MUTATED 7 21 2 0
HIVEP3 WILD-TYPE 197 116 45 3

Figure S2457.  Get High-res Image Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIVEP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00574 (Fisher's exact test), Q value = 0.042

Table S6309.  Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HIVEP3 MUTATED 1 12 8 3 3
HIVEP3 WILD-TYPE 38 84 36 85 77

Figure S2458.  Get High-res Image Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0232 (Fisher's exact test), Q value = 0.092

Table S6310.  Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HIVEP3 MUTATED 4 7 9 1 4
HIVEP3 WILD-TYPE 22 72 64 81 54

Figure S2459.  Get High-res Image Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HIVEP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S6311.  Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HIVEP3 MUTATED 11 8 3 3
HIVEP3 WILD-TYPE 116 43 68 66
'HIVEP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00125 (Fisher's exact test), Q value = 0.018

Table S6312.  Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HIVEP3 MUTATED 2 5 16 5 1
HIVEP3 WILD-TYPE 82 80 69 64 46

Figure S2460.  Get High-res Image Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.49

Table S6313.  Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HIVEP3 MUTATED 7 7 6 9
HIVEP3 WILD-TYPE 88 67 115 71
'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S6314.  Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HIVEP3 MUTATED 7 8 6 3 3 3
HIVEP3 WILD-TYPE 45 56 66 101 37 56
'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.6

Table S6315.  Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HIVEP3 MUTATED 20 4 6
HIVEP3 WILD-TYPE 197 71 93
'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00459 (Fisher's exact test), Q value = 0.037

Table S6316.  Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HIVEP3 MUTATED 10 3 12
HIVEP3 WILD-TYPE 111 105 60

Figure S2461.  Get High-res Image Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HIVEP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0028 (Fisher's exact test), Q value = 0.028

Table S6317.  Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HIVEP3 MUTATED 8 1 7 1 8
HIVEP3 WILD-TYPE 80 65 38 54 39

Figure S2462.  Get High-res Image Gene #634: 'HIVEP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM123C MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S6318.  Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM123C MUTATED 0 12 1 0
FAM123C WILD-TYPE 204 125 46 3

Figure S2463.  Get High-res Image Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM123C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.15

Table S6319.  Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM123C MUTATED 2 6 2 0 1
FAM123C WILD-TYPE 37 90 42 88 79
'FAM123C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S6320.  Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM123C MUTATED 1 3 7 1 1
FAM123C WILD-TYPE 25 76 66 81 57
'FAM123C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 0.36

Table S6321.  Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM123C MUTATED 4 5 2 2
FAM123C WILD-TYPE 123 46 69 67
'FAM123C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S6322.  Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM123C MUTATED 0 2 5 2 3
FAM123C WILD-TYPE 84 83 80 67 44
'FAM123C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S6323.  Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM123C MUTATED 3 1 2 6
FAM123C WILD-TYPE 92 73 119 74
'FAM123C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S6324.  Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM123C MUTATED 3 6 1 1 2 0
FAM123C WILD-TYPE 49 58 71 103 38 59

Figure S2464.  Get High-res Image Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM123C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.69

Table S6325.  Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM123C MUTATED 9 1 3
FAM123C WILD-TYPE 208 74 96
'FAM123C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.1

Table S6326.  Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM123C MUTATED 3 1 6
FAM123C WILD-TYPE 118 107 66

Figure S2465.  Get High-res Image Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'FAM123C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S6327.  Gene #635: 'FAM123C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM123C MUTATED 3 1 3 0 3
FAM123C WILD-TYPE 85 65 42 55 44
'EPHB6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S6328.  Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EPHB6 MUTATED 3 12 2 0
EPHB6 WILD-TYPE 201 125 45 3

Figure S2466.  Get High-res Image Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHB6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00552 (Fisher's exact test), Q value = 0.041

Table S6329.  Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EPHB6 MUTATED 2 9 3 1 0
EPHB6 WILD-TYPE 37 87 41 87 80

Figure S2467.  Get High-res Image Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPHB6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0375 (Fisher's exact test), Q value = 0.12

Table S6330.  Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EPHB6 MUTATED 0 9 3 1 2
EPHB6 WILD-TYPE 26 70 70 81 56

Figure S2468.  Get High-res Image Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHB6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00079 (Fisher's exact test), Q value = 0.013

Table S6331.  Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EPHB6 MUTATED 1 6 7 1
EPHB6 WILD-TYPE 126 45 64 68

Figure S2469.  Get High-res Image Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S6332.  Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EPHB6 MUTATED 1 1 12 0 1
EPHB6 WILD-TYPE 83 84 73 69 46

Figure S2470.  Get High-res Image Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHB6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.012

Table S6333.  Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EPHB6 MUTATED 2 2 1 10
EPHB6 WILD-TYPE 93 72 120 70

Figure S2471.  Get High-res Image Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S6334.  Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EPHB6 MUTATED 3 6 4 2 1 1
EPHB6 WILD-TYPE 49 58 68 102 39 58
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.077 (Fisher's exact test), Q value = 0.19

Table S6335.  Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EPHB6 MUTATED 14 2 1
EPHB6 WILD-TYPE 203 73 98
'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.12

Table S6336.  Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EPHB6 MUTATED 6 1 6
EPHB6 WILD-TYPE 115 107 66

Figure S2472.  Get High-res Image Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHB6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 0.16

Table S6337.  Gene #636: 'EPHB6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EPHB6 MUTATED 5 1 2 0 5
EPHB6 WILD-TYPE 83 65 43 55 42
'PTPN13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.095

Table S6338.  Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTPN13 MUTATED 9 18 2 0
PTPN13 WILD-TYPE 195 119 45 3

Figure S2473.  Get High-res Image Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPN13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S6339.  Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTPN13 MUTATED 4 13 6 2 3
PTPN13 WILD-TYPE 35 83 38 86 77

Figure S2474.  Get High-res Image Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPN13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.11

Table S6340.  Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTPN13 MUTATED 2 10 4 1 6
PTPN13 WILD-TYPE 24 69 69 81 52

Figure S2475.  Get High-res Image Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTPN13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00379 (Fisher's exact test), Q value = 0.033

Table S6341.  Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTPN13 MUTATED 6 9 7 1
PTPN13 WILD-TYPE 121 42 64 68

Figure S2476.  Get High-res Image Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTPN13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.19

Table S6342.  Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTPN13 MUTATED 2 4 11 6 3
PTPN13 WILD-TYPE 82 81 74 63 44
'PTPN13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.22

Table S6343.  Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTPN13 MUTATED 8 3 5 10
PTPN13 WILD-TYPE 87 71 116 70
'PTPN13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.025

Table S6344.  Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTPN13 MUTATED 6 12 5 3 2 1
PTPN13 WILD-TYPE 46 52 67 101 38 58

Figure S2477.  Get High-res Image Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTPN13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0821 (Fisher's exact test), Q value = 0.19

Table S6345.  Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTPN13 MUTATED 22 3 4
PTPN13 WILD-TYPE 195 72 95
'PTPN13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.011

Table S6346.  Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTPN13 MUTATED 11 2 13
PTPN13 WILD-TYPE 110 106 59

Figure S2478.  Get High-res Image Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTPN13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00011 (Fisher's exact test), Q value = 0.0041

Table S6347.  Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTPN13 MUTATED 3 2 9 2 10
PTPN13 WILD-TYPE 85 64 36 53 37

Figure S2479.  Get High-res Image Gene #637: 'PTPN13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CALCRL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.91 (Fisher's exact test), Q value = 0.95

Table S6348.  Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CALCRL MUTATED 6 3 1 0
CALCRL WILD-TYPE 198 134 46 3
'CALCRL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.082

Table S6349.  Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CALCRL MUTATED 3 3 1 0 0
CALCRL WILD-TYPE 36 93 43 88 80

Figure S2480.  Get High-res Image Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CALCRL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.17

Table S6350.  Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CALCRL MUTATED 0 4 0 1 4
CALCRL WILD-TYPE 26 75 73 81 54
'CALCRL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00374 (Fisher's exact test), Q value = 0.033

Table S6351.  Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CALCRL MUTATED 1 5 0 3
CALCRL WILD-TYPE 126 46 71 66

Figure S2481.  Get High-res Image Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CALCRL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.57

Table S6352.  Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CALCRL MUTATED 1 1 4 1 2
CALCRL WILD-TYPE 83 84 81 68 45
'CALCRL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 0.92

Table S6353.  Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CALCRL MUTATED 3 2 2 2
CALCRL WILD-TYPE 92 72 119 78
'CALCRL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S6354.  Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CALCRL MUTATED 1 5 1 2 1 0
CALCRL WILD-TYPE 51 59 71 102 39 59
'CALCRL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S6355.  Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CALCRL MUTATED 7 3 0
CALCRL WILD-TYPE 210 72 99
'CALCRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6356.  Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CALCRL MUTATED 3 2 2
CALCRL WILD-TYPE 118 106 70
'CALCRL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.59

Table S6357.  Gene #638: 'CALCRL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CALCRL MUTATED 2 1 2 0 2
CALCRL WILD-TYPE 86 65 43 55 45
'AZGP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.69

Table S6358.  Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AZGP1 MUTATED 2 1 1 0
AZGP1 WILD-TYPE 202 136 46 3
'AZGP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 0.57

Table S6359.  Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AZGP1 MUTATED 0 3 0 1 0
AZGP1 WILD-TYPE 39 93 44 87 80
'AZGP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.7

Table S6360.  Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AZGP1 MUTATED 0 1 2 0 1
AZGP1 WILD-TYPE 26 78 71 82 57
'AZGP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.079

Table S6361.  Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AZGP1 MUTATED 1 3 0 0
AZGP1 WILD-TYPE 126 48 71 69

Figure S2482.  Get High-res Image Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AZGP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S6362.  Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AZGP1 MUTATED 1 0 3 0 0
AZGP1 WILD-TYPE 83 85 82 69 47
'AZGP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 0.2

Table S6363.  Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AZGP1 MUTATED 0 0 1 3
AZGP1 WILD-TYPE 95 74 120 77
'AZGP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.41

Table S6364.  Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AZGP1 MUTATED 1 0 2 0 0 1
AZGP1 WILD-TYPE 51 64 70 104 40 58
'AZGP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.87

Table S6365.  Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AZGP1 MUTATED 3 0 1
AZGP1 WILD-TYPE 214 75 98
'AZGP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S6366.  Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AZGP1 MUTATED 3 0 1
AZGP1 WILD-TYPE 118 108 71
'AZGP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.065

Table S6367.  Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AZGP1 MUTATED 0 0 0 1 3
AZGP1 WILD-TYPE 88 66 45 54 44

Figure S2483.  Get High-res Image Gene #639: 'AZGP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0733 (Fisher's exact test), Q value = 0.18

Table S6368.  Gene #640: 'DOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DOK1 MUTATED 0 4 1 0
DOK1 WILD-TYPE 204 133 46 3
'DOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 0.18

Table S6369.  Gene #640: 'DOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DOK1 MUTATED 0 4 0 0 0
DOK1 WILD-TYPE 39 92 44 88 80
'DOK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0893 (Fisher's exact test), Q value = 0.2

Table S6370.  Gene #640: 'DOK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DOK1 MUTATED 0 0 3 0 2
DOK1 WILD-TYPE 26 79 70 82 56
'DOK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00366 (Fisher's exact test), Q value = 0.033

Table S6371.  Gene #640: 'DOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DOK1 MUTATED 1 4 0 0
DOK1 WILD-TYPE 126 47 71 69

Figure S2484.  Get High-res Image Gene #640: 'DOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S6372.  Gene #640: 'DOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DOK1 MUTATED 0 0 3 1 1
DOK1 WILD-TYPE 84 85 82 68 46
'DOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.047 (Fisher's exact test), Q value = 0.14

Table S6373.  Gene #640: 'DOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DOK1 MUTATED 2 0 0 3
DOK1 WILD-TYPE 93 74 121 77

Figure S2485.  Get High-res Image Gene #640: 'DOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S6374.  Gene #640: 'DOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DOK1 MUTATED 1 2 2 0 0 0
DOK1 WILD-TYPE 51 62 70 104 40 59
'DOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.38

Table S6375.  Gene #640: 'DOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DOK1 MUTATED 5 0 0
DOK1 WILD-TYPE 212 75 99
'CDC5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00807 (Fisher's exact test), Q value = 0.05

Table S6376.  Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDC5L MUTATED 2 11 2 0
CDC5L WILD-TYPE 202 126 45 3

Figure S2486.  Get High-res Image Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDC5L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.53

Table S6377.  Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDC5L MUTATED 1 6 2 2 1
CDC5L WILD-TYPE 38 90 42 86 79
'CDC5L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.56

Table S6378.  Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDC5L MUTATED 0 5 3 1 2
CDC5L WILD-TYPE 26 74 70 81 56
'CDC5L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0139 (Fisher's exact test), Q value = 0.068

Table S6379.  Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDC5L MUTATED 2 6 2 1
CDC5L WILD-TYPE 125 45 69 68

Figure S2487.  Get High-res Image Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CDC5L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.16

Table S6380.  Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDC5L MUTATED 2 4 8 1 0
CDC5L WILD-TYPE 82 81 77 68 47
'CDC5L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.085 (Fisher's exact test), Q value = 0.2

Table S6381.  Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDC5L MUTATED 2 5 2 6
CDC5L WILD-TYPE 93 69 119 74
'CDC5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0941 (Fisher's exact test), Q value = 0.21

Table S6382.  Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDC5L MUTATED 5 5 1 3 0 2
CDC5L WILD-TYPE 47 59 71 101 40 57
'CDC5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S6383.  Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDC5L MUTATED 12 2 2
CDC5L WILD-TYPE 205 73 97
'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S6384.  Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDC5L MUTATED 7 2 3
CDC5L WILD-TYPE 114 106 69
'CDC5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 0.86

Table S6385.  Gene #641: 'CDC5L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDC5L MUTATED 4 2 2 1 3
CDC5L WILD-TYPE 84 64 43 54 44
'KIF2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.76

Table S6386.  Gene #642: 'KIF2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIF2B MUTATED 17 13 2 0
KIF2B WILD-TYPE 187 124 45 3
'KIF2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.7

Table S6387.  Gene #642: 'KIF2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIF2B MUTATED 6 8 4 6 6
KIF2B WILD-TYPE 33 88 40 82 74
'KIF2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S6388.  Gene #642: 'KIF2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIF2B MUTATED 3 7 8 3 4
KIF2B WILD-TYPE 23 72 65 79 54
'KIF2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 0.67

Table S6389.  Gene #642: 'KIF2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIF2B MUTATED 10 5 7 3
KIF2B WILD-TYPE 117 46 64 66
'KIF2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S6390.  Gene #642: 'KIF2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIF2B MUTATED 7 4 10 6 4
KIF2B WILD-TYPE 77 81 75 63 43
'KIF2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.36

Table S6391.  Gene #642: 'KIF2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIF2B MUTATED 11 5 6 9
KIF2B WILD-TYPE 84 69 115 71
'KIF2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S6392.  Gene #642: 'KIF2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIF2B MUTATED 4 3 6 8 6 5
KIF2B WILD-TYPE 48 61 66 96 34 54
'KIF2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.38

Table S6393.  Gene #642: 'KIF2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIF2B MUTATED 22 3 7
KIF2B WILD-TYPE 195 72 92
'KIF2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S6394.  Gene #642: 'KIF2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIF2B MUTATED 12 7 7
KIF2B WILD-TYPE 109 101 65
'KIF2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.91

Table S6395.  Gene #642: 'KIF2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIF2B MUTATED 9 5 4 3 5
KIF2B WILD-TYPE 79 61 41 52 42
'NOBOX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.019

Table S6396.  Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NOBOX MUTATED 0 9 1 0
NOBOX WILD-TYPE 204 128 46 3

Figure S2488.  Get High-res Image Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOBOX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.19

Table S6397.  Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NOBOX MUTATED 1 3 2 0 0
NOBOX WILD-TYPE 38 93 42 88 80
'NOBOX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.523 (Fisher's exact test), Q value = 0.63

Table S6398.  Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NOBOX MUTATED 0 4 2 1 3
NOBOX WILD-TYPE 26 75 71 81 55
'NOBOX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S6399.  Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NOBOX MUTATED 2 4 2 2
NOBOX WILD-TYPE 125 47 69 67
'NOBOX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S6400.  Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NOBOX MUTATED 0 4 4 1 0
NOBOX WILD-TYPE 84 81 81 68 47
'NOBOX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.59

Table S6401.  Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NOBOX MUTATED 1 3 2 3
NOBOX WILD-TYPE 94 71 119 77
'NOBOX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S6402.  Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NOBOX MUTATED 2 4 3 1 0 0
NOBOX WILD-TYPE 50 60 69 103 40 59
'NOBOX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S6403.  Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NOBOX MUTATED 8 1 1
NOBOX WILD-TYPE 209 74 98
'NOBOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.68

Table S6404.  Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NOBOX MUTATED 4 1 1
NOBOX WILD-TYPE 117 107 71
'NOBOX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.33

Table S6405.  Gene #643: 'NOBOX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NOBOX MUTATED 2 1 0 0 3
NOBOX WILD-TYPE 86 65 45 55 44
'GPR45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.61

Table S6406.  Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPR45 MUTATED 6 8 2 0
GPR45 WILD-TYPE 198 129 45 3
'GPR45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S6407.  Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPR45 MUTATED 0 8 1 2 2
GPR45 WILD-TYPE 39 88 43 86 78
'GPR45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0621 (Fisher's exact test), Q value = 0.16

Table S6408.  Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPR45 MUTATED 1 6 2 0 1
GPR45 WILD-TYPE 25 73 71 82 57
'GPR45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0266 (Fisher's exact test), Q value = 0.1

Table S6409.  Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPR45 MUTATED 3 5 2 0
GPR45 WILD-TYPE 124 46 69 69

Figure S2489.  Get High-res Image Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.74

Table S6410.  Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPR45 MUTATED 4 1 4 2 2
GPR45 WILD-TYPE 80 84 81 67 45
'GPR45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S6411.  Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPR45 MUTATED 6 1 3 3
GPR45 WILD-TYPE 89 73 118 77
'GPR45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.47

Table S6412.  Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPR45 MUTATED 4 3 4 2 0 3
GPR45 WILD-TYPE 48 61 68 102 40 56
'GPR45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0846 (Fisher's exact test), Q value = 0.2

Table S6413.  Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPR45 MUTATED 12 0 4
GPR45 WILD-TYPE 205 75 95
'GPR45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S6414.  Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPR45 MUTATED 6 2 4
GPR45 WILD-TYPE 115 106 68
'GPR45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00258 (Fisher's exact test), Q value = 0.027

Table S6415.  Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPR45 MUTATED 3 0 1 1 7
GPR45 WILD-TYPE 85 66 44 54 40

Figure S2490.  Get High-res Image Gene #644: 'GPR45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ACTR8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.066

Table S6416.  Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ACTR8 MUTATED 1 8 1 0
ACTR8 WILD-TYPE 203 129 46 3

Figure S2491.  Get High-res Image Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACTR8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.57

Table S6417.  Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ACTR8 MUTATED 1 5 1 1 1
ACTR8 WILD-TYPE 38 91 43 87 79
'ACTR8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.49

Table S6418.  Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ACTR8 MUTATED 0 2 3 1 4
ACTR8 WILD-TYPE 26 77 70 81 54
'ACTR8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S6419.  Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ACTR8 MUTATED 0 7 1 2
ACTR8 WILD-TYPE 127 44 70 67

Figure S2492.  Get High-res Image Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACTR8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S6420.  Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ACTR8 MUTATED 1 3 5 0 1
ACTR8 WILD-TYPE 83 82 80 69 46
'ACTR8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00602 (Fisher's exact test), Q value = 0.043

Table S6421.  Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ACTR8 MUTATED 1 1 1 7
ACTR8 WILD-TYPE 94 73 120 73

Figure S2493.  Get High-res Image Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACTR8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.14

Table S6422.  Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ACTR8 MUTATED 4 4 0 2 0 1
ACTR8 WILD-TYPE 48 60 72 102 40 58

Figure S2494.  Get High-res Image Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ACTR8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.598 (Fisher's exact test), Q value = 0.69

Table S6423.  Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ACTR8 MUTATED 8 1 2
ACTR8 WILD-TYPE 209 74 97
'ACTR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6424.  Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ACTR8 MUTATED 3 3 2
ACTR8 WILD-TYPE 118 105 70
'ACTR8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.827 (Fisher's exact test), Q value = 0.88

Table S6425.  Gene #645: 'ACTR8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ACTR8 MUTATED 2 1 2 1 2
ACTR8 WILD-TYPE 86 65 43 54 45
'SCAMP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.28

Table S6426.  Gene #646: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SCAMP2 MUTATED 1 5 1 0
SCAMP2 WILD-TYPE 203 132 46 3
'SCAMP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 0.64

Table S6427.  Gene #646: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SCAMP2 MUTATED 1 2 1 0 1
SCAMP2 WILD-TYPE 38 94 43 88 79
'SCAMP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.16

Table S6428.  Gene #646: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SCAMP2 MUTATED 0 3 0 0 3
SCAMP2 WILD-TYPE 26 76 73 82 55
'SCAMP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S6429.  Gene #646: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SCAMP2 MUTATED 1 2 3 0
SCAMP2 WILD-TYPE 126 49 68 69
'SCAMP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.57

Table S6430.  Gene #646: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SCAMP2 MUTATED 0 2 2 1 2
SCAMP2 WILD-TYPE 84 83 83 68 45
'SCAMP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0548 (Fisher's exact test), Q value = 0.15

Table S6431.  Gene #646: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SCAMP2 MUTATED 2 1 0 4
SCAMP2 WILD-TYPE 93 73 121 76
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.72

Table S6432.  Gene #646: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SCAMP2 MUTATED 2 2 1 2 0 0
SCAMP2 WILD-TYPE 50 62 71 102 40 59
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.075 (Fisher's exact test), Q value = 0.18

Table S6433.  Gene #646: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SCAMP2 MUTATED 7 0 0
SCAMP2 WILD-TYPE 210 75 99
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.5

Table S6434.  Gene #646: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SCAMP2 MUTATED 2 3 0
SCAMP2 WILD-TYPE 119 105 72
'SCAMP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S6435.  Gene #646: 'SCAMP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SCAMP2 MUTATED 3 0 0 0 2
SCAMP2 WILD-TYPE 85 66 45 55 45
'HMGCLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.82

Table S6436.  Gene #647: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HMGCLL1 MUTATED 5 3 2 0
HMGCLL1 WILD-TYPE 199 134 45 3
'HMGCLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 0.43

Table S6437.  Gene #647: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HMGCLL1 MUTATED 0 5 0 1 3
HMGCLL1 WILD-TYPE 39 91 44 87 77
'HMGCLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S6438.  Gene #647: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HMGCLL1 MUTATED 1 4 1 2 1
HMGCLL1 WILD-TYPE 25 75 72 80 57
'HMGCLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S6439.  Gene #647: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HMGCLL1 MUTATED 6 1 1 1
HMGCLL1 WILD-TYPE 121 50 70 68
'HMGCLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S6440.  Gene #647: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HMGCLL1 MUTATED 1 2 3 3 1
HMGCLL1 WILD-TYPE 83 83 82 66 46
'HMGCLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 0.37

Table S6441.  Gene #647: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HMGCLL1 MUTATED 5 0 3 2
HMGCLL1 WILD-TYPE 90 74 118 78
'HMGCLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.813 (Fisher's exact test), Q value = 0.87

Table S6442.  Gene #647: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HMGCLL1 MUTATED 2 3 1 2 1 1
HMGCLL1 WILD-TYPE 50 61 71 102 39 58
'HMGCLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 0.82

Table S6443.  Gene #647: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HMGCLL1 MUTATED 7 1 2
HMGCLL1 WILD-TYPE 210 74 97
'HMGCLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.37

Table S6444.  Gene #647: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HMGCLL1 MUTATED 1 2 3
HMGCLL1 WILD-TYPE 120 106 69
'HMGCLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.324 (Fisher's exact test), Q value = 0.45

Table S6445.  Gene #647: 'HMGCLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HMGCLL1 MUTATED 1 0 2 2 1
HMGCLL1 WILD-TYPE 87 66 43 53 46
'COL11A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.44

Table S6446.  Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
COL11A1 MUTATED 16 19 5 0
COL11A1 WILD-TYPE 188 118 42 3
'COL11A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0255 (Fisher's exact test), Q value = 0.098

Table S6447.  Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
COL11A1 MUTATED 5 18 2 5 6
COL11A1 WILD-TYPE 34 78 42 83 74

Figure S2495.  Get High-res Image Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL11A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 0.83

Table S6448.  Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
COL11A1 MUTATED 2 9 8 6 8
COL11A1 WILD-TYPE 24 70 65 76 50
'COL11A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.0099

Table S6449.  Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
COL11A1 MUTATED 6 14 7 6
COL11A1 WILD-TYPE 121 37 64 63

Figure S2496.  Get High-res Image Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'COL11A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S6450.  Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
COL11A1 MUTATED 5 6 18 6 4
COL11A1 WILD-TYPE 79 79 67 63 43

Figure S2497.  Get High-res Image Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'COL11A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0204 (Fisher's exact test), Q value = 0.085

Table S6451.  Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
COL11A1 MUTATED 13 6 6 14
COL11A1 WILD-TYPE 82 68 115 66

Figure S2498.  Get High-res Image Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'COL11A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.13

Table S6452.  Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
COL11A1 MUTATED 11 6 9 6 6 3
COL11A1 WILD-TYPE 41 58 63 98 34 56

Figure S2499.  Get High-res Image Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'COL11A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.26

Table S6453.  Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
COL11A1 MUTATED 29 6 6
COL11A1 WILD-TYPE 188 69 93
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 0.45

Table S6454.  Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
COL11A1 MUTATED 17 9 6
COL11A1 WILD-TYPE 104 99 66
'COL11A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0258 (Fisher's exact test), Q value = 0.099

Table S6455.  Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
COL11A1 MUTATED 11 3 3 4 11
COL11A1 WILD-TYPE 77 63 42 51 36

Figure S2500.  Get High-res Image Gene #648: 'COL11A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BIN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.16

Table S6456.  Gene #649: 'BIN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BIN3 MUTATED 0 4 0 0
BIN3 WILD-TYPE 204 133 47 3
'BIN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.07 (Fisher's exact test), Q value = 0.18

Table S6457.  Gene #649: 'BIN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BIN3 MUTATED 0 4 0 0 0
BIN3 WILD-TYPE 39 92 44 88 80
'BIN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.71

Table S6458.  Gene #649: 'BIN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BIN3 MUTATED 0 1 2 0 0
BIN3 WILD-TYPE 84 84 83 69 47
'BIN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S6459.  Gene #649: 'BIN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BIN3 MUTATED 1 0 0 2
BIN3 WILD-TYPE 94 74 121 78
'BIN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0761 (Fisher's exact test), Q value = 0.18

Table S6460.  Gene #649: 'BIN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BIN3 MUTATED 2 1 0 0 1 0
BIN3 WILD-TYPE 50 63 72 104 39 59
'BIN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.62

Table S6461.  Gene #649: 'BIN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BIN3 MUTATED 2 0 2
BIN3 WILD-TYPE 215 75 97
'BIN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6462.  Gene #649: 'BIN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BIN3 MUTATED 1 1 1
BIN3 WILD-TYPE 120 107 71
'BIN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S6463.  Gene #649: 'BIN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BIN3 MUTATED 1 0 1 0 1
BIN3 WILD-TYPE 87 66 44 55 46
'SLC25A17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S6464.  Gene #650: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC25A17 MUTATED 1 2 1 0
SLC25A17 WILD-TYPE 203 135 46 3
'SLC25A17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S6465.  Gene #650: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC25A17 MUTATED 0 2 0 0 2
SLC25A17 WILD-TYPE 26 77 73 82 56
'SLC25A17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 0.88

Table S6466.  Gene #650: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC25A17 MUTATED 2 1 1 0
SLC25A17 WILD-TYPE 125 50 70 69
'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S6467.  Gene #650: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC25A17 MUTATED 0 1 2 1 0
SLC25A17 WILD-TYPE 84 84 83 68 47
'SLC25A17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S6468.  Gene #650: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC25A17 MUTATED 2 0 0 2
SLC25A17 WILD-TYPE 93 74 121 78
'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 0.74

Table S6469.  Gene #650: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC25A17 MUTATED 0 2 1 1 0 0
SLC25A17 WILD-TYPE 52 62 71 103 40 59
'SLC25A17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 0.87

Table S6470.  Gene #650: 'SLC25A17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC25A17 MUTATED 3 0 1
SLC25A17 WILD-TYPE 214 75 98
'CTSO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.48

Table S6471.  Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CTSO MUTATED 2 4 0 0
CTSO WILD-TYPE 202 133 47 3
'CTSO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 0.52

Table S6472.  Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CTSO MUTATED 1 3 0 1 0
CTSO WILD-TYPE 38 93 44 87 80
'CTSO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 0.88

Table S6473.  Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CTSO MUTATED 0 1 2 1 2
CTSO WILD-TYPE 26 78 71 81 56
'CTSO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.062

Table S6474.  Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CTSO MUTATED 2 4 0 0
CTSO WILD-TYPE 125 47 71 69

Figure S2501.  Get High-res Image Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CTSO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.55

Table S6475.  Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CTSO MUTATED 1 0 3 1 1
CTSO WILD-TYPE 83 85 82 68 46
'CTSO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.4

Table S6476.  Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CTSO MUTATED 2 0 1 3
CTSO WILD-TYPE 93 74 120 77
'CTSO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 0.86

Table S6477.  Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CTSO MUTATED 2 1 1 1 0 1
CTSO WILD-TYPE 50 63 71 103 40 58
'CTSO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S6478.  Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CTSO MUTATED 4 0 2
CTSO WILD-TYPE 213 75 97
'CTSO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.89

Table S6479.  Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CTSO MUTATED 3 1 1
CTSO WILD-TYPE 118 107 71
'CTSO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.432 (Fisher's exact test), Q value = 0.55

Table S6480.  Gene #651: 'CTSO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CTSO MUTATED 1 0 1 1 2
CTSO WILD-TYPE 87 66 44 54 45
'PAM MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00305 (Fisher's exact test), Q value = 0.029

Table S6481.  Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PAM MUTATED 0 8 1 0
PAM WILD-TYPE 204 129 46 3

Figure S2502.  Get High-res Image Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PAM MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0231 (Fisher's exact test), Q value = 0.091

Table S6482.  Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PAM MUTATED 1 2 3 0 0
PAM WILD-TYPE 38 94 41 88 80

Figure S2503.  Get High-res Image Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PAM MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S6483.  Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PAM MUTATED 0 3 1 0 1
PAM WILD-TYPE 26 76 72 82 57
'PAM MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.49

Table S6484.  Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PAM MUTATED 2 2 1 0
PAM WILD-TYPE 125 49 70 69
'PAM MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.45

Table S6485.  Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PAM MUTATED 0 2 4 1 1
PAM WILD-TYPE 84 83 81 68 46
'PAM MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.72

Table S6486.  Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PAM MUTATED 1 2 2 3
PAM WILD-TYPE 94 72 119 77
'PAM MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.16

Table S6487.  Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PAM MUTATED 1 5 2 1 0 0
PAM WILD-TYPE 51 59 70 103 40 59
'PAM MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0979 (Fisher's exact test), Q value = 0.21

Table S6488.  Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PAM MUTATED 8 1 0
PAM WILD-TYPE 209 74 99
'PAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S6489.  Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PAM MUTATED 3 0 3
PAM WILD-TYPE 118 108 69
'PAM MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 0.74

Table S6490.  Gene #652: 'PAM MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PAM MUTATED 2 1 1 0 2
PAM WILD-TYPE 86 65 44 55 45
'TLE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00091 (Fisher's exact test), Q value = 0.015

Table S6491.  Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TLE1 MUTATED 1 11 0 0
TLE1 WILD-TYPE 203 126 47 3

Figure S2504.  Get High-res Image Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TLE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.091

Table S6492.  Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TLE1 MUTATED 0 7 1 1 0
TLE1 WILD-TYPE 39 89 43 87 80

Figure S2505.  Get High-res Image Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TLE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 0.94

Table S6493.  Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TLE1 MUTATED 1 3 3 2 1
TLE1 WILD-TYPE 25 76 70 80 57
'TLE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.012

Table S6494.  Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TLE1 MUTATED 1 7 1 1
TLE1 WILD-TYPE 126 44 70 68

Figure S2506.  Get High-res Image Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TLE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.11

Table S6495.  Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TLE1 MUTATED 2 1 7 0 1
TLE1 WILD-TYPE 82 84 78 69 46

Figure S2507.  Get High-res Image Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TLE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S6496.  Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TLE1 MUTATED 2 1 2 6
TLE1 WILD-TYPE 93 73 119 74
'TLE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 0.43

Table S6497.  Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TLE1 MUTATED 3 2 4 1 0 2
TLE1 WILD-TYPE 49 62 68 103 40 57
'TLE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.34

Table S6498.  Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TLE1 MUTATED 9 0 3
TLE1 WILD-TYPE 208 75 96
'TLE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.088 (Fisher's exact test), Q value = 0.2

Table S6499.  Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TLE1 MUTATED 5 0 2
TLE1 WILD-TYPE 116 108 70
'TLE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S6500.  Gene #653: 'TLE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TLE1 MUTATED 2 0 1 1 3
TLE1 WILD-TYPE 86 66 44 54 44
'ZNF285 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.59

Table S6501.  Gene #654: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF285 MUTATED 4 5 0 0
ZNF285 WILD-TYPE 200 132 47 3
'ZNF285 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S6502.  Gene #654: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF285 MUTATED 0 5 0 2 0
ZNF285 WILD-TYPE 39 91 44 86 80
'ZNF285 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.75

Table S6503.  Gene #654: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF285 MUTATED 0 3 1 2 3
ZNF285 WILD-TYPE 26 76 72 80 55
'ZNF285 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S6504.  Gene #654: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF285 MUTATED 3 4 1 1
ZNF285 WILD-TYPE 124 47 70 68
'ZNF285 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.64 (Fisher's exact test), Q value = 0.72

Table S6505.  Gene #654: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF285 MUTATED 2 2 4 1 0
ZNF285 WILD-TYPE 82 83 81 68 47
'ZNF285 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 0.97

Table S6506.  Gene #654: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF285 MUTATED 2 1 4 2
ZNF285 WILD-TYPE 93 73 117 78
'ZNF285 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S6507.  Gene #654: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF285 MUTATED 2 4 1 2 0 0
ZNF285 WILD-TYPE 50 60 71 102 40 59
'ZNF285 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.68

Table S6508.  Gene #654: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF285 MUTATED 7 1 1
ZNF285 WILD-TYPE 210 74 98
'ZNF285 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S6509.  Gene #654: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF285 MUTATED 1 4 2
ZNF285 WILD-TYPE 120 104 70
'ZNF285 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.739 (Fisher's exact test), Q value = 0.81

Table S6510.  Gene #654: 'ZNF285 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF285 MUTATED 2 2 2 1 0
ZNF285 WILD-TYPE 86 64 43 54 47
'PTOV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S6511.  Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTOV1 MUTATED 1 7 3 0
PTOV1 WILD-TYPE 203 130 44 3

Figure S2508.  Get High-res Image Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTOV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S6512.  Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTOV1 MUTATED 0 7 2 0 1
PTOV1 WILD-TYPE 39 89 42 88 79

Figure S2509.  Get High-res Image Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTOV1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 0.61

Table S6513.  Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTOV1 MUTATED 0 4 4 1 2
PTOV1 WILD-TYPE 26 75 69 81 56
'PTOV1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S6514.  Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTOV1 MUTATED 2 6 2 1
PTOV1 WILD-TYPE 125 45 69 68

Figure S2510.  Get High-res Image Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTOV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00732 (Fisher's exact test), Q value = 0.048

Table S6515.  Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTOV1 MUTATED 0 2 5 0 4
PTOV1 WILD-TYPE 84 83 80 69 43

Figure S2511.  Get High-res Image Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTOV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00133 (Fisher's exact test), Q value = 0.018

Table S6516.  Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTOV1 MUTATED 1 1 1 8
PTOV1 WILD-TYPE 94 73 120 72

Figure S2512.  Get High-res Image Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTOV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.54

Table S6517.  Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTOV1 MUTATED 3 2 3 3 0 0
PTOV1 WILD-TYPE 49 62 69 101 40 59
'PTOV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0859 (Fisher's exact test), Q value = 0.2

Table S6518.  Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTOV1 MUTATED 9 2 0
PTOV1 WILD-TYPE 208 73 99
'PTOV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.55

Table S6519.  Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTOV1 MUTATED 3 1 3
PTOV1 WILD-TYPE 118 107 69
'PTOV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S6520.  Gene #655: 'PTOV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTOV1 MUTATED 1 1 2 0 3
PTOV1 WILD-TYPE 87 65 43 55 44
'SLC6A11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.093

Table S6521.  Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC6A11 MUTATED 1 7 2 0
SLC6A11 WILD-TYPE 203 130 45 3

Figure S2513.  Get High-res Image Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC6A11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S6522.  Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC6A11 MUTATED 0 3 2 0 2
SLC6A11 WILD-TYPE 39 93 42 88 78
'SLC6A11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0897 (Fisher's exact test), Q value = 0.2

Table S6523.  Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC6A11 MUTATED 2 1 3 0 2
SLC6A11 WILD-TYPE 24 78 70 82 56
'SLC6A11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 0.31

Table S6524.  Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC6A11 MUTATED 4 3 1 0
SLC6A11 WILD-TYPE 123 48 70 69
'SLC6A11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.6

Table S6525.  Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC6A11 MUTATED 2 2 4 0 1
SLC6A11 WILD-TYPE 82 83 81 69 46
'SLC6A11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 0.99

Table S6526.  Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC6A11 MUTATED 3 1 3 2
SLC6A11 WILD-TYPE 92 73 118 78
'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S6527.  Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC6A11 MUTATED 1 5 1 1 1 1
SLC6A11 WILD-TYPE 51 59 71 103 39 58
'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 0.41

Table S6528.  Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC6A11 MUTATED 8 0 2
SLC6A11 WILD-TYPE 209 75 97
'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.072

Table S6529.  Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC6A11 MUTATED 0 2 4
SLC6A11 WILD-TYPE 121 106 68

Figure S2514.  Get High-res Image Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC6A11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S6530.  Gene #656: 'SLC6A11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC6A11 MUTATED 2 0 3 0 1
SLC6A11 WILD-TYPE 86 66 42 55 46
'BRCA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.12

Table S6531.  Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BRCA1 MUTATED 3 10 2 0
BRCA1 WILD-TYPE 201 127 45 3

Figure S2515.  Get High-res Image Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRCA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.069 (Fisher's exact test), Q value = 0.17

Table S6532.  Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BRCA1 MUTATED 1 5 3 1 0
BRCA1 WILD-TYPE 38 91 41 87 80
'BRCA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.081

Table S6533.  Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BRCA1 MUTATED 0 7 2 0 4
BRCA1 WILD-TYPE 26 72 71 82 54

Figure S2516.  Get High-res Image Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BRCA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00656 (Fisher's exact test), Q value = 0.045

Table S6534.  Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BRCA1 MUTATED 3 6 4 0
BRCA1 WILD-TYPE 124 45 67 69

Figure S2517.  Get High-res Image Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BRCA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00635 (Fisher's exact test), Q value = 0.044

Table S6535.  Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BRCA1 MUTATED 2 1 9 1 0
BRCA1 WILD-TYPE 82 84 76 68 47

Figure S2518.  Get High-res Image Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRCA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00351 (Fisher's exact test), Q value = 0.032

Table S6536.  Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BRCA1 MUTATED 1 0 4 8
BRCA1 WILD-TYPE 94 74 117 72

Figure S2519.  Get High-res Image Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRCA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S6537.  Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BRCA1 MUTATED 1 4 6 3 0 1
BRCA1 WILD-TYPE 51 60 66 101 40 58
'BRCA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 0.5

Table S6538.  Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BRCA1 MUTATED 11 1 3
BRCA1 WILD-TYPE 206 74 96
'BRCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S6539.  Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BRCA1 MUTATED 2 2 5
BRCA1 WILD-TYPE 119 106 67
'BRCA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.32

Table S6540.  Gene #657: 'BRCA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BRCA1 MUTATED 3 1 0 1 4
BRCA1 WILD-TYPE 85 65 45 54 43
'HAUS6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00194 (Fisher's exact test), Q value = 0.023

Table S6541.  Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HAUS6 MUTATED 1 11 1 0
HAUS6 WILD-TYPE 203 126 46 3

Figure S2520.  Get High-res Image Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HAUS6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 0.17

Table S6542.  Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HAUS6 MUTATED 1 8 0 1 2
HAUS6 WILD-TYPE 38 88 44 87 78
'HAUS6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S6543.  Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HAUS6 MUTATED 2 3 3 1 4
HAUS6 WILD-TYPE 24 76 70 81 54
'HAUS6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00627 (Fisher's exact test), Q value = 0.044

Table S6544.  Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HAUS6 MUTATED 4 7 1 1
HAUS6 WILD-TYPE 123 44 70 68

Figure S2521.  Get High-res Image Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0202 (Fisher's exact test), Q value = 0.085

Table S6545.  Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HAUS6 MUTATED 1 0 7 2 2
HAUS6 WILD-TYPE 83 85 78 67 45

Figure S2522.  Get High-res Image Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HAUS6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 0.67

Table S6546.  Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HAUS6 MUTATED 4 1 3 4
HAUS6 WILD-TYPE 91 73 118 76
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S6547.  Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HAUS6 MUTATED 5 6 0 0 1 1
HAUS6 WILD-TYPE 47 58 72 104 39 58

Figure S2523.  Get High-res Image Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S6548.  Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HAUS6 MUTATED 10 2 1
HAUS6 WILD-TYPE 207 73 98
'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00579 (Fisher's exact test), Q value = 0.042

Table S6549.  Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HAUS6 MUTATED 6 0 6
HAUS6 WILD-TYPE 115 108 66

Figure S2524.  Get High-res Image Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HAUS6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0295 (Fisher's exact test), Q value = 0.11

Table S6550.  Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HAUS6 MUTATED 3 0 5 1 3
HAUS6 WILD-TYPE 85 66 40 54 44

Figure S2525.  Get High-res Image Gene #658: 'HAUS6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARHGEF11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.039

Table S6551.  Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARHGEF11 MUTATED 6 15 0 0
ARHGEF11 WILD-TYPE 198 122 47 3

Figure S2526.  Get High-res Image Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.012

Table S6552.  Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARHGEF11 MUTATED 1 13 0 1 2
ARHGEF11 WILD-TYPE 38 83 44 87 78

Figure S2527.  Get High-res Image Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S6553.  Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARHGEF11 MUTATED 1 2 6 1 5
ARHGEF11 WILD-TYPE 25 77 67 81 53
'ARHGEF11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00588 (Fisher's exact test), Q value = 0.042

Table S6554.  Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARHGEF11 MUTATED 8 6 1 0
ARHGEF11 WILD-TYPE 119 45 70 69

Figure S2528.  Get High-res Image Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARHGEF11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00177 (Fisher's exact test), Q value = 0.022

Table S6555.  Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARHGEF11 MUTATED 0 3 10 7 1
ARHGEF11 WILD-TYPE 84 82 75 62 46

Figure S2529.  Get High-res Image Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0117 (Fisher's exact test), Q value = 0.062

Table S6556.  Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARHGEF11 MUTATED 10 2 2 7
ARHGEF11 WILD-TYPE 85 72 119 73

Figure S2530.  Get High-res Image Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0193 (Fisher's exact test), Q value = 0.082

Table S6557.  Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARHGEF11 MUTATED 5 6 2 2 5 1
ARHGEF11 WILD-TYPE 47 58 70 102 35 58

Figure S2531.  Get High-res Image Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.073

Table S6558.  Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARHGEF11 MUTATED 18 1 2
ARHGEF11 WILD-TYPE 199 74 97

Figure S2532.  Get High-res Image Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0819 (Fisher's exact test), Q value = 0.19

Table S6559.  Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARHGEF11 MUTATED 10 2 4
ARHGEF11 WILD-TYPE 111 106 68
'ARHGEF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.079

Table S6560.  Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARHGEF11 MUTATED 6 1 3 0 6
ARHGEF11 WILD-TYPE 82 65 42 55 41

Figure S2533.  Get High-res Image Gene #659: 'ARHGEF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MGST2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S6561.  Gene #660: 'MGST2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MGST2 MUTATED 0 3 0 0
MGST2 WILD-TYPE 204 134 47 3
'MGST2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0885 (Fisher's exact test), Q value = 0.2

Table S6562.  Gene #660: 'MGST2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MGST2 MUTATED 0 1 2 0 0
MGST2 WILD-TYPE 39 95 42 88 80
'MGST2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.2

Table S6563.  Gene #660: 'MGST2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MGST2 MUTATED 0 0 3 0 0
MGST2 WILD-TYPE 84 85 82 69 47
'MGST2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.079

Table S6564.  Gene #660: 'MGST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MGST2 MUTATED 0 0 0 3
MGST2 WILD-TYPE 95 74 121 77

Figure S2534.  Get High-res Image Gene #660: 'MGST2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MGST2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S6565.  Gene #660: 'MGST2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MGST2 MUTATED 0 2 1 0 0 0
MGST2 WILD-TYPE 52 62 71 104 40 59
'MGST2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.68

Table S6566.  Gene #660: 'MGST2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MGST2 MUTATED 3 0 0
MGST2 WILD-TYPE 214 75 99
'CD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00738 (Fisher's exact test), Q value = 0.048

Table S6567.  Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CD4 MUTATED 1 9 1 0
CD4 WILD-TYPE 203 128 46 3

Figure S2535.  Get High-res Image Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00296 (Fisher's exact test), Q value = 0.029

Table S6568.  Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CD4 MUTATED 1 8 1 0 0
CD4 WILD-TYPE 38 88 43 88 80

Figure S2536.  Get High-res Image Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 0.18

Table S6569.  Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CD4 MUTATED 0 4 5 0 1
CD4 WILD-TYPE 26 75 68 82 57
'CD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 0.59

Table S6570.  Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CD4 MUTATED 3 3 3 1
CD4 WILD-TYPE 124 48 68 68
'CD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.17

Table S6571.  Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CD4 MUTATED 0 2 5 1 3
CD4 WILD-TYPE 84 83 80 68 44
'CD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S6572.  Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CD4 MUTATED 3 2 1 5
CD4 WILD-TYPE 92 72 120 75
'CD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.58

Table S6573.  Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CD4 MUTATED 4 1 2 2 1 1
CD4 WILD-TYPE 48 63 70 102 39 58
'CD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 0.69

Table S6574.  Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CD4 MUTATED 8 1 2
CD4 WILD-TYPE 209 74 97
'CD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S6575.  Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CD4 MUTATED 6 1 3
CD4 WILD-TYPE 115 107 69
'CD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.636 (Fisher's exact test), Q value = 0.72

Table S6576.  Gene #661: 'CD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CD4 MUTATED 4 1 1 1 3
CD4 WILD-TYPE 84 65 44 54 44
'RP1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.079 (Fisher's exact test), Q value = 0.19

Table S6577.  Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RP1L1 MUTATED 10 17 4 0
RP1L1 WILD-TYPE 194 120 43 3
'RP1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00699 (Fisher's exact test), Q value = 0.046

Table S6578.  Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RP1L1 MUTATED 3 15 4 2 3
RP1L1 WILD-TYPE 36 81 40 86 77

Figure S2537.  Get High-res Image Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RP1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.15

Table S6579.  Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RP1L1 MUTATED 2 12 7 2 4
RP1L1 WILD-TYPE 24 67 66 80 54
'RP1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.08

Table S6580.  Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RP1L1 MUTATED 10 10 5 2
RP1L1 WILD-TYPE 117 41 66 67

Figure S2538.  Get High-res Image Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RP1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.12

Table S6581.  Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RP1L1 MUTATED 3 4 13 7 2
RP1L1 WILD-TYPE 81 81 72 62 45

Figure S2539.  Get High-res Image Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RP1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.13

Table S6582.  Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RP1L1 MUTATED 13 5 4 7
RP1L1 WILD-TYPE 82 69 117 73

Figure S2540.  Get High-res Image Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RP1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S6583.  Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RP1L1 MUTATED 5 7 7 4 6 2
RP1L1 WILD-TYPE 47 57 65 100 34 57
'RP1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0487 (Fisher's exact test), Q value = 0.14

Table S6584.  Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RP1L1 MUTATED 24 3 4
RP1L1 WILD-TYPE 193 72 95

Figure S2541.  Get High-res Image Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S6585.  Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RP1L1 MUTATED 11 4 8
RP1L1 WILD-TYPE 110 104 64
'RP1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.77

Table S6586.  Gene #662: 'RP1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RP1L1 MUTATED 8 3 4 3 5
RP1L1 WILD-TYPE 80 63 41 52 42
'UVRAG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.016

Table S6587.  Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UVRAG MUTATED 1 11 0 0
UVRAG WILD-TYPE 203 126 47 3

Figure S2542.  Get High-res Image Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UVRAG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.4

Table S6588.  Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UVRAG MUTATED 0 3 2 0 2
UVRAG WILD-TYPE 39 93 42 88 78
'UVRAG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S6589.  Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UVRAG MUTATED 1 7 1 0 3
UVRAG WILD-TYPE 25 72 72 82 55

Figure S2543.  Get High-res Image Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'UVRAG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00253 (Fisher's exact test), Q value = 0.026

Table S6590.  Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UVRAG MUTATED 2 6 4 0
UVRAG WILD-TYPE 125 45 67 69

Figure S2544.  Get High-res Image Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UVRAG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S6591.  Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UVRAG MUTATED 0 2 7 1 1
UVRAG WILD-TYPE 84 83 78 68 46

Figure S2545.  Get High-res Image Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UVRAG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S6592.  Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UVRAG MUTATED 3 2 2 4
UVRAG WILD-TYPE 92 72 119 76
'UVRAG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S6593.  Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UVRAG MUTATED 1 9 0 2 0 0
UVRAG WILD-TYPE 51 55 72 102 40 59

Figure S2546.  Get High-res Image Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UVRAG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0263 (Fisher's exact test), Q value = 0.1

Table S6594.  Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UVRAG MUTATED 11 1 0
UVRAG WILD-TYPE 206 74 99

Figure S2547.  Get High-res Image Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UVRAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S6595.  Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
UVRAG MUTATED 1 2 4
UVRAG WILD-TYPE 120 106 68
'UVRAG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.097

Table S6596.  Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
UVRAG MUTATED 2 0 4 0 1
UVRAG WILD-TYPE 86 66 41 55 46

Figure S2548.  Get High-res Image Gene #663: 'UVRAG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S6597.  Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CHD1 MUTATED 3 7 3 0
CHD1 WILD-TYPE 201 130 44 3
'CHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0939 (Fisher's exact test), Q value = 0.21

Table S6598.  Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CHD1 MUTATED 2 5 0 0 3
CHD1 WILD-TYPE 37 91 44 88 77
'CHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.6

Table S6599.  Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CHD1 MUTATED 1 2 4 1 3
CHD1 WILD-TYPE 25 77 69 81 55
'CHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00476 (Fisher's exact test), Q value = 0.037

Table S6600.  Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CHD1 MUTATED 6 5 0 0
CHD1 WILD-TYPE 121 46 71 69

Figure S2549.  Get High-res Image Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.2

Table S6601.  Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CHD1 MUTATED 0 1 5 3 2
CHD1 WILD-TYPE 84 84 80 66 45
'CHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0112 (Fisher's exact test), Q value = 0.06

Table S6602.  Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CHD1 MUTATED 7 0 1 3
CHD1 WILD-TYPE 88 74 120 77

Figure S2550.  Get High-res Image Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S6603.  Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CHD1 MUTATED 2 6 2 1 2 0
CHD1 WILD-TYPE 50 58 70 103 38 59

Figure S2551.  Get High-res Image Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S6604.  Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CHD1 MUTATED 11 1 1
CHD1 WILD-TYPE 206 74 98
'CHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S6605.  Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CHD1 MUTATED 5 1 4
CHD1 WILD-TYPE 116 107 68
'CHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S6606.  Gene #664: 'CHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CHD1 MUTATED 3 1 3 0 3
CHD1 WILD-TYPE 85 65 42 55 44
'ZMYND8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0054

Table S6607.  Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZMYND8 MUTATED 2 16 1 0
ZMYND8 WILD-TYPE 202 121 46 3

Figure S2552.  Get High-res Image Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZMYND8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0046

Table S6608.  Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZMYND8 MUTATED 1 13 2 0 1
ZMYND8 WILD-TYPE 38 83 42 88 79

Figure S2553.  Get High-res Image Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZMYND8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S6609.  Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZMYND8 MUTATED 0 4 7 1 3
ZMYND8 WILD-TYPE 26 75 66 81 55
'ZMYND8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.0079

Table S6610.  Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZMYND8 MUTATED 2 9 3 1
ZMYND8 WILD-TYPE 125 42 68 68

Figure S2554.  Get High-res Image Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00199 (Fisher's exact test), Q value = 0.023

Table S6611.  Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZMYND8 MUTATED 0 2 10 5 1
ZMYND8 WILD-TYPE 84 83 75 64 46

Figure S2555.  Get High-res Image Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZMYND8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0635 (Fisher's exact test), Q value = 0.17

Table S6612.  Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZMYND8 MUTATED 5 3 2 8
ZMYND8 WILD-TYPE 90 71 119 72
'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S6613.  Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZMYND8 MUTATED 9 6 1 2 1 0
ZMYND8 WILD-TYPE 43 58 71 102 39 59

Figure S2556.  Get High-res Image Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00881 (Fisher's exact test), Q value = 0.053

Table S6614.  Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZMYND8 MUTATED 17 1 1
ZMYND8 WILD-TYPE 200 74 98

Figure S2557.  Get High-res Image Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S6615.  Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZMYND8 MUTATED 9 2 5
ZMYND8 WILD-TYPE 112 106 67
'ZMYND8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0045 (Fisher's exact test), Q value = 0.036

Table S6616.  Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZMYND8 MUTATED 4 1 4 0 7
ZMYND8 WILD-TYPE 84 65 41 55 40

Figure S2558.  Get High-res Image Gene #665: 'ZMYND8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPATCH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S6617.  Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPATCH4 MUTATED 3 4 2 0
GPATCH4 WILD-TYPE 201 133 45 3
'GPATCH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S6618.  Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPATCH4 MUTATED 0 5 0 2 0
GPATCH4 WILD-TYPE 39 91 44 86 80
'GPATCH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S6619.  Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPATCH4 MUTATED 0 3 3 0 1
GPATCH4 WILD-TYPE 26 76 70 82 57
'GPATCH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0443 (Fisher's exact test), Q value = 0.13

Table S6620.  Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPATCH4 MUTATED 2 4 1 0
GPATCH4 WILD-TYPE 125 47 70 69

Figure S2559.  Get High-res Image Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0774 (Fisher's exact test), Q value = 0.19

Table S6621.  Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPATCH4 MUTATED 3 0 5 1 0
GPATCH4 WILD-TYPE 81 85 80 68 47
'GPATCH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.51 (Fisher's exact test), Q value = 0.62

Table S6622.  Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPATCH4 MUTATED 2 1 2 4
GPATCH4 WILD-TYPE 93 73 119 76
'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 0.2

Table S6623.  Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPATCH4 MUTATED 3 1 3 0 0 2
GPATCH4 WILD-TYPE 49 63 69 104 40 57
'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S6624.  Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPATCH4 MUTATED 7 0 2
GPATCH4 WILD-TYPE 210 75 97
'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S6625.  Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPATCH4 MUTATED 3 0 3
GPATCH4 WILD-TYPE 118 108 69
'GPATCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S6626.  Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPATCH4 MUTATED 1 0 1 0 4
GPATCH4 WILD-TYPE 87 66 44 55 43

Figure S2560.  Get High-res Image Gene #666: 'GPATCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MASTL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 0.18

Table S6627.  Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MASTL MUTATED 3 9 1 0
MASTL WILD-TYPE 201 128 46 3
'MASTL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.35

Table S6628.  Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MASTL MUTATED 1 4 4 1 2
MASTL WILD-TYPE 38 92 40 87 78
'MASTL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.58

Table S6629.  Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MASTL MUTATED 1 3 5 1 2
MASTL WILD-TYPE 25 76 68 81 56
'MASTL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.48

Table S6630.  Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MASTL MUTATED 3 4 3 2
MASTL WILD-TYPE 124 47 68 67
'MASTL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.017

Table S6631.  Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MASTL MUTATED 0 1 9 1 1
MASTL WILD-TYPE 84 84 76 68 46

Figure S2561.  Get High-res Image Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MASTL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 0.94

Table S6632.  Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MASTL MUTATED 4 2 3 3
MASTL WILD-TYPE 91 72 118 77
'MASTL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 0.12

Table S6633.  Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MASTL MUTATED 3 6 2 2 0 0
MASTL WILD-TYPE 49 58 70 102 40 59

Figure S2562.  Get High-res Image Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MASTL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S6634.  Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MASTL MUTATED 11 1 1
MASTL WILD-TYPE 206 74 98
'MASTL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00415 (Fisher's exact test), Q value = 0.035

Table S6635.  Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MASTL MUTATED 3 1 8
MASTL WILD-TYPE 118 107 64

Figure S2563.  Get High-res Image Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MASTL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.075 (Fisher's exact test), Q value = 0.18

Table S6636.  Gene #667: 'MASTL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MASTL MUTATED 2 1 5 1 3
MASTL WILD-TYPE 86 65 40 54 44
'KIRREL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00359 (Fisher's exact test), Q value = 0.032

Table S6637.  Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIRREL2 MUTATED 2 12 2 0
KIRREL2 WILD-TYPE 202 125 45 3

Figure S2564.  Get High-res Image Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIRREL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.013

Table S6638.  Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIRREL2 MUTATED 2 11 1 0 1
KIRREL2 WILD-TYPE 37 85 43 88 79

Figure S2565.  Get High-res Image Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIRREL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S6639.  Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIRREL2 MUTATED 1 3 4 0 4
KIRREL2 WILD-TYPE 25 76 69 82 54
'KIRREL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00165 (Fisher's exact test), Q value = 0.021

Table S6640.  Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIRREL2 MUTATED 4 7 1 0
KIRREL2 WILD-TYPE 123 44 70 69

Figure S2566.  Get High-res Image Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.086

Table S6641.  Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIRREL2 MUTATED 1 2 7 1 5
KIRREL2 WILD-TYPE 83 83 78 68 42

Figure S2567.  Get High-res Image Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIRREL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00064 (Fisher's exact test), Q value = 0.012

Table S6642.  Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIRREL2 MUTATED 4 0 2 10
KIRREL2 WILD-TYPE 91 74 119 70

Figure S2568.  Get High-res Image Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00751 (Fisher's exact test), Q value = 0.048

Table S6643.  Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIRREL2 MUTATED 6 5 3 1 1 0
KIRREL2 WILD-TYPE 46 59 69 103 39 59

Figure S2569.  Get High-res Image Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S6644.  Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIRREL2 MUTATED 13 2 1
KIRREL2 WILD-TYPE 204 73 98
'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S6645.  Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIRREL2 MUTATED 6 2 6
KIRREL2 WILD-TYPE 115 106 66
'KIRREL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00392 (Fisher's exact test), Q value = 0.034

Table S6646.  Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIRREL2 MUTATED 3 1 3 0 7
KIRREL2 WILD-TYPE 85 65 42 55 40

Figure S2570.  Get High-res Image Gene #668: 'KIRREL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HSPB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00949 (Fisher's exact test), Q value = 0.055

Table S6647.  Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HSPB8 MUTATED 0 6 0 0
HSPB8 WILD-TYPE 204 131 47 3

Figure S2571.  Get High-res Image Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HSPB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.11

Table S6648.  Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HSPB8 MUTATED 0 5 1 0 0
HSPB8 WILD-TYPE 39 91 43 88 80

Figure S2572.  Get High-res Image Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HSPB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S6649.  Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HSPB8 MUTATED 0 1 3 0 0
HSPB8 WILD-TYPE 26 78 70 82 58
'HSPB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00063 (Fisher's exact test), Q value = 0.012

Table S6650.  Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HSPB8 MUTATED 0 4 0 0
HSPB8 WILD-TYPE 127 47 71 69

Figure S2573.  Get High-res Image Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HSPB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00612 (Fisher's exact test), Q value = 0.043

Table S6651.  Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HSPB8 MUTATED 0 0 5 0 1
HSPB8 WILD-TYPE 84 85 80 69 46

Figure S2574.  Get High-res Image Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HSPB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00326 (Fisher's exact test), Q value = 0.031

Table S6652.  Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HSPB8 MUTATED 1 0 0 5
HSPB8 WILD-TYPE 94 74 121 75

Figure S2575.  Get High-res Image Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HSPB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.13

Table S6653.  Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HSPB8 MUTATED 3 2 1 0 0 0
HSPB8 WILD-TYPE 49 62 71 104 40 59

Figure S2576.  Get High-res Image Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HSPB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.64

Table S6654.  Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HSPB8 MUTATED 5 0 1
HSPB8 WILD-TYPE 212 75 98
'HSPB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S6655.  Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HSPB8 MUTATED 4 0 1
HSPB8 WILD-TYPE 117 108 71
'HSPB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S6656.  Gene #669: 'HSPB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HSPB8 MUTATED 2 0 1 0 2
HSPB8 WILD-TYPE 86 66 44 55 45
'GTF3C4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0062

Table S6657.  Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GTF3C4 MUTATED 1 12 0 0
GTF3C4 WILD-TYPE 203 125 47 3

Figure S2577.  Get High-res Image Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GTF3C4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0313 (Fisher's exact test), Q value = 0.11

Table S6658.  Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GTF3C4 MUTATED 1 7 2 0 1
GTF3C4 WILD-TYPE 38 89 42 88 79

Figure S2578.  Get High-res Image Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GTF3C4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S6659.  Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GTF3C4 MUTATED 0 6 4 1 1
GTF3C4 WILD-TYPE 26 73 69 81 57
'GTF3C4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 0.15

Table S6660.  Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GTF3C4 MUTATED 2 3 6 1
GTF3C4 WILD-TYPE 125 48 65 68
'GTF3C4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0859 (Fisher's exact test), Q value = 0.2

Table S6661.  Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GTF3C4 MUTATED 0 3 5 1 3
GTF3C4 WILD-TYPE 84 82 80 68 44
'GTF3C4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0222 (Fisher's exact test), Q value = 0.089

Table S6662.  Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GTF3C4 MUTATED 2 2 1 7
GTF3C4 WILD-TYPE 93 72 120 73

Figure S2579.  Get High-res Image Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S6663.  Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GTF3C4 MUTATED 4 4 1 3 1 0
GTF3C4 WILD-TYPE 48 60 71 101 39 59
'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0578 (Fisher's exact test), Q value = 0.16

Table S6664.  Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GTF3C4 MUTATED 10 3 0
GTF3C4 WILD-TYPE 207 72 99
'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0675 (Fisher's exact test), Q value = 0.17

Table S6665.  Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GTF3C4 MUTATED 4 1 5
GTF3C4 WILD-TYPE 117 107 67
'GTF3C4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0345 (Fisher's exact test), Q value = 0.12

Table S6666.  Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GTF3C4 MUTATED 2 1 2 0 5
GTF3C4 WILD-TYPE 86 65 43 55 42

Figure S2580.  Get High-res Image Gene #670: 'GTF3C4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPP3CA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.14

Table S6667.  Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PPP3CA MUTATED 2 8 2 0
PPP3CA WILD-TYPE 202 129 45 3

Figure S2581.  Get High-res Image Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPP3CA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.41

Table S6668.  Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PPP3CA MUTATED 0 5 2 1 1
PPP3CA WILD-TYPE 39 91 42 87 79
'PPP3CA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.48

Table S6669.  Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PPP3CA MUTATED 2 4 2 1 1
PPP3CA WILD-TYPE 24 75 71 81 57
'PPP3CA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S6670.  Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PPP3CA MUTATED 4 3 2 1
PPP3CA WILD-TYPE 123 48 69 68
'PPP3CA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 0.18

Table S6671.  Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PPP3CA MUTATED 1 2 6 0 2
PPP3CA WILD-TYPE 83 83 79 69 45
'PPP3CA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S6672.  Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PPP3CA MUTATED 3 0 3 5
PPP3CA WILD-TYPE 92 74 118 75
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.31

Table S6673.  Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PPP3CA MUTATED 2 3 5 1 0 1
PPP3CA WILD-TYPE 50 61 67 103 40 58
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S6674.  Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PPP3CA MUTATED 9 1 2
PPP3CA WILD-TYPE 208 74 97
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S6675.  Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PPP3CA MUTATED 5 1 2
PPP3CA WILD-TYPE 116 107 70
'PPP3CA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S6676.  Gene #671: 'PPP3CA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PPP3CA MUTATED 4 0 1 0 3
PPP3CA WILD-TYPE 84 66 44 55 44
'NOB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S6677.  Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NOB1 MUTATED 1 5 1 0
NOB1 WILD-TYPE 203 132 46 3
'NOB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S6678.  Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NOB1 MUTATED 0 3 1 0 0
NOB1 WILD-TYPE 39 93 43 88 80
'NOB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S6679.  Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NOB1 MUTATED 0 2 0 0 2
NOB1 WILD-TYPE 26 77 73 82 56
'NOB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.88

Table S6680.  Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NOB1 MUTATED 2 1 1 0
NOB1 WILD-TYPE 125 50 70 69
'NOB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S6681.  Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NOB1 MUTATED 0 1 3 2 1
NOB1 WILD-TYPE 84 84 82 67 46
'NOB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S6682.  Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NOB1 MUTATED 3 2 0 2
NOB1 WILD-TYPE 92 72 121 78
'NOB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.13

Table S6683.  Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NOB1 MUTATED 1 4 1 0 1 0
NOB1 WILD-TYPE 51 60 71 104 39 59

Figure S2582.  Get High-res Image Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S6684.  Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NOB1 MUTATED 6 0 1
NOB1 WILD-TYPE 211 75 98
'NOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S6685.  Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NOB1 MUTATED 3 0 1
NOB1 WILD-TYPE 118 108 71
'NOB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.37

Table S6686.  Gene #672: 'NOB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NOB1 MUTATED 1 0 1 0 2
NOB1 WILD-TYPE 87 66 44 55 45
'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0275 (Fisher's exact test), Q value = 0.1

Table S6687.  Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C15ORF52 MUTATED 0 5 1 0
C15ORF52 WILD-TYPE 204 132 46 3

Figure S2583.  Get High-res Image Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0203 (Fisher's exact test), Q value = 0.085

Table S6688.  Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C15ORF52 MUTATED 0 5 0 0 0
C15ORF52 WILD-TYPE 39 91 44 88 80

Figure S2584.  Get High-res Image Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C15ORF52 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S6689.  Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C15ORF52 MUTATED 0 3 0 0 2
C15ORF52 WILD-TYPE 26 76 73 82 56
'C15ORF52 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S6690.  Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C15ORF52 MUTATED 1 2 2 0
C15ORF52 WILD-TYPE 126 49 69 69
'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.57

Table S6691.  Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C15ORF52 MUTATED 0 1 3 1 1
C15ORF52 WILD-TYPE 84 84 82 68 46
'C15ORF52 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0327 (Fisher's exact test), Q value = 0.11

Table S6692.  Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C15ORF52 MUTATED 1 1 0 4
C15ORF52 WILD-TYPE 94 73 121 76

Figure S2585.  Get High-res Image Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.36

Table S6693.  Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C15ORF52 MUTATED 3 1 1 1 0 0
C15ORF52 WILD-TYPE 49 63 71 103 40 59
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.27

Table S6694.  Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C15ORF52 MUTATED 6 0 0
C15ORF52 WILD-TYPE 211 75 99
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.89

Table S6695.  Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C15ORF52 MUTATED 3 1 1
C15ORF52 WILD-TYPE 118 107 71
'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0617 (Fisher's exact test), Q value = 0.16

Table S6696.  Gene #673: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C15ORF52 MUTATED 2 0 0 0 3
C15ORF52 WILD-TYPE 86 66 45 55 44
'MEN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.12

Table S6697.  Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MEN1 MUTATED 2 8 0 0
MEN1 WILD-TYPE 202 129 47 3

Figure S2586.  Get High-res Image Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MEN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.73

Table S6698.  Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MEN1 MUTATED 1 4 1 1 1
MEN1 WILD-TYPE 38 92 43 87 79
'MEN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 0.49

Table S6699.  Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MEN1 MUTATED 1 3 2 0 2
MEN1 WILD-TYPE 25 76 71 82 56
'MEN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.095 (Fisher's exact test), Q value = 0.21

Table S6700.  Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MEN1 MUTATED 2 3 3 0
MEN1 WILD-TYPE 125 48 68 69
'MEN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0426 (Fisher's exact test), Q value = 0.13

Table S6701.  Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MEN1 MUTATED 0 1 3 2 4
MEN1 WILD-TYPE 84 84 82 67 43

Figure S2587.  Get High-res Image Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MEN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S6702.  Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MEN1 MUTATED 4 0 2 4
MEN1 WILD-TYPE 91 74 119 76
'MEN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S6703.  Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MEN1 MUTATED 3 4 1 2 0 0
MEN1 WILD-TYPE 49 60 71 102 40 59
'MEN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0762 (Fisher's exact test), Q value = 0.18

Table S6704.  Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MEN1 MUTATED 9 1 0
MEN1 WILD-TYPE 208 74 99
'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S6705.  Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MEN1 MUTATED 3 2 3
MEN1 WILD-TYPE 118 106 69
'MEN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S6706.  Gene #674: 'MEN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MEN1 MUTATED 2 1 2 0 3
MEN1 WILD-TYPE 86 65 43 55 44
'MAPK15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00507 (Fisher's exact test), Q value = 0.039

Table S6707.  Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAPK15 MUTATED 0 7 1 0
MAPK15 WILD-TYPE 204 130 46 3

Figure S2588.  Get High-res Image Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAPK15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S6708.  Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAPK15 MUTATED 0 3 1 0 0
MAPK15 WILD-TYPE 39 93 43 88 80
'MAPK15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S6709.  Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAPK15 MUTATED 0 1 1 1 4
MAPK15 WILD-TYPE 26 78 72 81 54
'MAPK15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S6710.  Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAPK15 MUTATED 2 3 1 1
MAPK15 WILD-TYPE 125 48 70 68
'MAPK15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S6711.  Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAPK15 MUTATED 0 1 4 1 1
MAPK15 WILD-TYPE 84 84 81 68 46
'MAPK15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S6712.  Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAPK15 MUTATED 3 1 0 3
MAPK15 WILD-TYPE 92 73 121 77
'MAPK15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.1

Table S6713.  Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAPK15 MUTATED 0 5 2 1 0 0
MAPK15 WILD-TYPE 52 59 70 103 40 59

Figure S2589.  Get High-res Image Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAPK15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S6714.  Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAPK15 MUTATED 6 1 1
MAPK15 WILD-TYPE 211 74 98
'MAPK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S6715.  Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAPK15 MUTATED 2 0 2
MAPK15 WILD-TYPE 119 108 70
'MAPK15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.91

Table S6716.  Gene #675: 'MAPK15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAPK15 MUTATED 1 1 1 0 1
MAPK15 WILD-TYPE 87 65 44 55 46
'DDX50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0067

Table S6717.  Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DDX50 MUTATED 0 11 1 0
DDX50 WILD-TYPE 204 126 46 3

Figure S2590.  Get High-res Image Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDX50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.016

Table S6718.  Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DDX50 MUTATED 0 9 0 0 1
DDX50 WILD-TYPE 39 87 44 88 79

Figure S2591.  Get High-res Image Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDX50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.54

Table S6719.  Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DDX50 MUTATED 1 1 4 1 2
DDX50 WILD-TYPE 25 78 69 81 56
'DDX50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00234 (Fisher's exact test), Q value = 0.025

Table S6720.  Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DDX50 MUTATED 1 6 1 1
DDX50 WILD-TYPE 126 45 70 68

Figure S2592.  Get High-res Image Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0276 (Fisher's exact test), Q value = 0.1

Table S6721.  Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DDX50 MUTATED 0 2 7 1 2
DDX50 WILD-TYPE 84 83 78 68 45

Figure S2593.  Get High-res Image Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DDX50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0088 (Fisher's exact test), Q value = 0.053

Table S6722.  Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DDX50 MUTATED 1 3 1 7
DDX50 WILD-TYPE 94 71 120 73

Figure S2594.  Get High-res Image Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DDX50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0438 (Fisher's exact test), Q value = 0.13

Table S6723.  Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DDX50 MUTATED 4 3 4 1 0 0
DDX50 WILD-TYPE 48 61 68 103 40 59

Figure S2595.  Get High-res Image Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDX50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.1

Table S6724.  Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DDX50 MUTATED 11 1 0
DDX50 WILD-TYPE 206 74 99

Figure S2596.  Get High-res Image Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DDX50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S6725.  Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DDX50 MUTATED 6 1 3
DDX50 WILD-TYPE 115 107 69
'DDX50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00806 (Fisher's exact test), Q value = 0.05

Table S6726.  Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DDX50 MUTATED 2 1 1 0 6
DDX50 WILD-TYPE 86 65 44 55 41

Figure S2597.  Get High-res Image Gene #676: 'DDX50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ATP6V1H MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0752 (Fisher's exact test), Q value = 0.18

Table S6727.  Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ATP6V1H MUTATED 3 9 1 0
ATP6V1H WILD-TYPE 201 128 46 3
'ATP6V1H MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.1

Table S6728.  Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ATP6V1H MUTATED 2 7 1 0 1
ATP6V1H WILD-TYPE 37 89 43 88 79

Figure S2598.  Get High-res Image Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP6V1H MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 0.89

Table S6729.  Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ATP6V1H MUTATED 1 4 2 2 3
ATP6V1H WILD-TYPE 25 75 71 80 55
'ATP6V1H MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00142 (Fisher's exact test), Q value = 0.019

Table S6730.  Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ATP6V1H MUTATED 1 7 2 2
ATP6V1H WILD-TYPE 126 44 69 67

Figure S2599.  Get High-res Image Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATP6V1H MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S6731.  Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ATP6V1H MUTATED 1 4 5 0 2
ATP6V1H WILD-TYPE 83 81 80 69 45
'ATP6V1H MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.42

Table S6732.  Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ATP6V1H MUTATED 2 3 2 5
ATP6V1H WILD-TYPE 93 71 119 75
'ATP6V1H MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.478 (Fisher's exact test), Q value = 0.59

Table S6733.  Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ATP6V1H MUTATED 3 2 4 3 1 0
ATP6V1H WILD-TYPE 49 62 68 101 39 59
'ATP6V1H MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 0.16

Table S6734.  Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ATP6V1H MUTATED 10 3 0
ATP6V1H WILD-TYPE 207 72 99
'ATP6V1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.47

Table S6735.  Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ATP6V1H MUTATED 6 2 1
ATP6V1H WILD-TYPE 115 106 71
'ATP6V1H MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S6736.  Gene #677: 'ATP6V1H MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ATP6V1H MUTATED 2 2 1 0 4
ATP6V1H WILD-TYPE 86 64 44 55 43
'KIAA1609 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.089

Table S6737.  Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1609 MUTATED 1 7 0 0
KIAA1609 WILD-TYPE 203 130 47 3

Figure S2600.  Get High-res Image Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1609 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S6738.  Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1609 MUTATED 0 5 1 0 1
KIAA1609 WILD-TYPE 39 91 43 88 79
'KIAA1609 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.5

Table S6739.  Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1609 MUTATED 1 1 3 1 0
KIAA1609 WILD-TYPE 25 78 70 81 58
'KIAA1609 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.069

Table S6740.  Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1609 MUTATED 1 4 0 1
KIAA1609 WILD-TYPE 126 47 71 68

Figure S2601.  Get High-res Image Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1609 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.076

Table S6741.  Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1609 MUTATED 0 1 6 1 0
KIAA1609 WILD-TYPE 84 84 79 68 47

Figure S2602.  Get High-res Image Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1609 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.18

Table S6742.  Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1609 MUTATED 1 1 1 5
KIAA1609 WILD-TYPE 94 73 120 75
'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S6743.  Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1609 MUTATED 3 2 1 2 0 0
KIAA1609 WILD-TYPE 49 62 71 102 40 59
'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S6744.  Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1609 MUTATED 6 1 1
KIAA1609 WILD-TYPE 211 74 98
'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S6745.  Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1609 MUTATED 4 0 1
KIAA1609 WILD-TYPE 117 108 71
'KIAA1609 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S6746.  Gene #678: 'KIAA1609 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1609 MUTATED 2 0 1 0 2
KIAA1609 WILD-TYPE 86 66 44 55 45
'ITPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.021

Table S6747.  Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ITPR2 MUTATED 6 19 2 0
ITPR2 WILD-TYPE 198 118 45 3

Figure S2603.  Get High-res Image Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S6748.  Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ITPR2 MUTATED 2 11 3 3 2
ITPR2 WILD-TYPE 37 85 41 85 78
'ITPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S6749.  Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ITPR2 MUTATED 2 7 6 1 4
ITPR2 WILD-TYPE 24 72 67 81 54
'ITPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S6750.  Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ITPR2 MUTATED 4 12 2 2
ITPR2 WILD-TYPE 123 39 69 67

Figure S2604.  Get High-res Image Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.1

Table S6751.  Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ITPR2 MUTATED 3 5 13 2 3
ITPR2 WILD-TYPE 81 80 72 67 44

Figure S2605.  Get High-res Image Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ITPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.42

Table S6752.  Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ITPR2 MUTATED 9 3 6 8
ITPR2 WILD-TYPE 86 71 115 72
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.11

Table S6753.  Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ITPR2 MUTATED 4 10 5 2 3 3
ITPR2 WILD-TYPE 48 54 67 102 37 56

Figure S2606.  Get High-res Image Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.59

Table S6754.  Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ITPR2 MUTATED 18 3 6
ITPR2 WILD-TYPE 199 72 93
'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.14

Table S6755.  Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ITPR2 MUTATED 9 2 7
ITPR2 WILD-TYPE 112 106 65

Figure S2607.  Get High-res Image Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ITPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00211 (Fisher's exact test), Q value = 0.024

Table S6756.  Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ITPR2 MUTATED 3 1 5 1 8
ITPR2 WILD-TYPE 85 65 40 54 39

Figure S2608.  Get High-res Image Gene #679: 'ITPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NUP35 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.48

Table S6757.  Gene #680: 'NUP35 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NUP35 MUTATED 2 4 0 0
NUP35 WILD-TYPE 202 133 47 3
'NUP35 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.64

Table S6758.  Gene #680: 'NUP35 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NUP35 MUTATED 1 2 1 0 1
NUP35 WILD-TYPE 38 94 43 88 79
'NUP35 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6759.  Gene #680: 'NUP35 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NUP35 MUTATED 0 1 1 1 0
NUP35 WILD-TYPE 26 78 72 81 58
'NUP35 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6760.  Gene #680: 'NUP35 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NUP35 MUTATED 1 0 1 1
NUP35 WILD-TYPE 126 51 70 68
'NUP35 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.44

Table S6761.  Gene #680: 'NUP35 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NUP35 MUTATED 1 0 3 2 0
NUP35 WILD-TYPE 83 85 82 67 47
'NUP35 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.45

Table S6762.  Gene #680: 'NUP35 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NUP35 MUTATED 3 0 1 2
NUP35 WILD-TYPE 92 74 120 78
'NUP35 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S6763.  Gene #680: 'NUP35 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NUP35 MUTATED 1 2 1 2 0 0
NUP35 WILD-TYPE 51 62 71 102 40 59
'NUP35 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.863 (Fisher's exact test), Q value = 0.91

Table S6764.  Gene #680: 'NUP35 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NUP35 MUTATED 3 1 2
NUP35 WILD-TYPE 214 74 97
'NUP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.27

Table S6765.  Gene #680: 'NUP35 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NUP35 MUTATED 4 0 1
NUP35 WILD-TYPE 117 108 71
'NUP35 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.86

Table S6766.  Gene #680: 'NUP35 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NUP35 MUTATED 2 0 1 1 1
NUP35 WILD-TYPE 86 66 44 54 46
'LIMCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.27

Table S6767.  Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LIMCH1 MUTATED 4 8 0 0
LIMCH1 WILD-TYPE 200 129 47 3
'LIMCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.12

Table S6768.  Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LIMCH1 MUTATED 0 8 2 1 1
LIMCH1 WILD-TYPE 39 88 42 87 79

Figure S2609.  Get High-res Image Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LIMCH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 0.83

Table S6769.  Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LIMCH1 MUTATED 0 2 3 1 2
LIMCH1 WILD-TYPE 26 77 70 81 56
'LIMCH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.59

Table S6770.  Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LIMCH1 MUTATED 3 3 1 1
LIMCH1 WILD-TYPE 124 48 70 68
'LIMCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00634 (Fisher's exact test), Q value = 0.044

Table S6771.  Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LIMCH1 MUTATED 0 2 7 0 2
LIMCH1 WILD-TYPE 84 83 78 69 45

Figure S2610.  Get High-res Image Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LIMCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S6772.  Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LIMCH1 MUTATED 1 3 3 4
LIMCH1 WILD-TYPE 94 71 118 76
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.53

Table S6773.  Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LIMCH1 MUTATED 3 2 1 4 2 0
LIMCH1 WILD-TYPE 49 62 71 100 38 59
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S6774.  Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LIMCH1 MUTATED 8 3 1
LIMCH1 WILD-TYPE 209 72 98
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 0.66

Table S6775.  Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LIMCH1 MUTATED 3 5 4
LIMCH1 WILD-TYPE 118 103 68
'LIMCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.6

Table S6776.  Gene #681: 'LIMCH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LIMCH1 MUTATED 5 3 2 0 2
LIMCH1 WILD-TYPE 83 63 43 55 45
'NAGPA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.33

Table S6777.  Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NAGPA MUTATED 2 5 0 0
NAGPA WILD-TYPE 202 132 47 3
'NAGPA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.48

Table S6778.  Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NAGPA MUTATED 0 4 1 2 0
NAGPA WILD-TYPE 39 92 43 86 80
'NAGPA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.38

Table S6779.  Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NAGPA MUTATED 1 2 2 0 0
NAGPA WILD-TYPE 25 77 71 82 58
'NAGPA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S6780.  Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NAGPA MUTATED 2 1 2 0
NAGPA WILD-TYPE 125 50 69 69
'NAGPA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 0.48

Table S6781.  Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NAGPA MUTATED 0 1 2 1 2
NAGPA WILD-TYPE 84 84 83 68 45
'NAGPA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S6782.  Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NAGPA MUTATED 1 1 0 4
NAGPA WILD-TYPE 94 73 121 76

Figure S2611.  Get High-res Image Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NAGPA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S6783.  Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NAGPA MUTATED 3 2 0 1 1 0
NAGPA WILD-TYPE 49 62 72 103 39 59
'NAGPA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S6784.  Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NAGPA MUTATED 6 0 1
NAGPA WILD-TYPE 211 75 98
'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.14

Table S6785.  Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NAGPA MUTATED 3 0 4
NAGPA WILD-TYPE 118 108 68

Figure S2612.  Get High-res Image Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NAGPA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.059

Table S6786.  Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NAGPA MUTATED 1 0 2 0 4
NAGPA WILD-TYPE 87 66 43 55 43

Figure S2613.  Get High-res Image Gene #682: 'NAGPA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PDS5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00131 (Fisher's exact test), Q value = 0.018

Table S6787.  Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PDS5A MUTATED 2 13 1 0
PDS5A WILD-TYPE 202 124 46 3

Figure S2614.  Get High-res Image Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PDS5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S6788.  Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PDS5A MUTATED 1 8 3 1 2
PDS5A WILD-TYPE 38 88 41 87 78
'PDS5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.66

Table S6789.  Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PDS5A MUTATED 1 4 2 1 3
PDS5A WILD-TYPE 25 75 71 81 55
'PDS5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.11

Table S6790.  Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PDS5A MUTATED 4 5 2 0
PDS5A WILD-TYPE 123 46 69 69

Figure S2615.  Get High-res Image Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PDS5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S6791.  Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PDS5A MUTATED 1 2 9 3 0
PDS5A WILD-TYPE 83 83 76 66 47

Figure S2616.  Get High-res Image Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PDS5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S6792.  Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PDS5A MUTATED 4 1 3 7
PDS5A WILD-TYPE 91 73 118 73
'PDS5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0351 (Fisher's exact test), Q value = 0.12

Table S6793.  Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PDS5A MUTATED 6 5 3 2 0 1
PDS5A WILD-TYPE 46 59 69 102 40 58

Figure S2617.  Get High-res Image Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PDS5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0243 (Fisher's exact test), Q value = 0.095

Table S6794.  Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PDS5A MUTATED 15 1 1
PDS5A WILD-TYPE 202 74 98

Figure S2618.  Get High-res Image Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PDS5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.14

Table S6795.  Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PDS5A MUTATED 8 1 5
PDS5A WILD-TYPE 113 107 67

Figure S2619.  Get High-res Image Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PDS5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S6796.  Gene #683: 'PDS5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PDS5A MUTATED 4 1 3 1 5
PDS5A WILD-TYPE 84 65 42 54 42
'CEP110 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00829 (Fisher's exact test), Q value = 0.051

Table S6797.  Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CEP110 MUTATED 2 11 2 0
CEP110 WILD-TYPE 202 126 45 3

Figure S2620.  Get High-res Image Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CEP110 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S6798.  Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CEP110 MUTATED 1 10 1 1 1
CEP110 WILD-TYPE 38 86 43 87 79

Figure S2621.  Get High-res Image Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CEP110 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S6799.  Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CEP110 MUTATED 2 2 3 1 5
CEP110 WILD-TYPE 24 77 70 81 53
'CEP110 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S6800.  Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CEP110 MUTATED 4 5 1 3
CEP110 WILD-TYPE 123 46 70 66
'CEP110 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.69

Table S6801.  Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CEP110 MUTATED 1 3 4 4 2
CEP110 WILD-TYPE 83 82 81 65 45
'CEP110 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00888 (Fisher's exact test), Q value = 0.053

Table S6802.  Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CEP110 MUTATED 5 3 0 6
CEP110 WILD-TYPE 90 71 121 74

Figure S2622.  Get High-res Image Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CEP110 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S6803.  Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CEP110 MUTATED 5 3 3 2 1 1
CEP110 WILD-TYPE 47 61 69 102 39 58
'CEP110 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S6804.  Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CEP110 MUTATED 12 2 1
CEP110 WILD-TYPE 205 73 98
'CEP110 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.38

Table S6805.  Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CEP110 MUTATED 7 2 4
CEP110 WILD-TYPE 114 106 68
'CEP110 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S6806.  Gene #684: 'CEP110 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CEP110 MUTATED 5 2 2 0 4
CEP110 WILD-TYPE 83 64 43 55 43
'DPAGT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.62

Table S6807.  Gene #685: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DPAGT1 MUTATED 2 3 1 0
DPAGT1 WILD-TYPE 202 134 46 3
'DPAGT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6808.  Gene #685: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DPAGT1 MUTATED 0 2 1 1 1
DPAGT1 WILD-TYPE 39 94 43 87 79
'DPAGT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 0.95

Table S6809.  Gene #685: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DPAGT1 MUTATED 0 1 2 1 1
DPAGT1 WILD-TYPE 26 78 71 81 57
'DPAGT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.59

Table S6810.  Gene #685: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DPAGT1 MUTATED 1 2 1 1
DPAGT1 WILD-TYPE 126 49 70 68
'DPAGT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S6811.  Gene #685: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DPAGT1 MUTATED 0 1 2 2 1
DPAGT1 WILD-TYPE 84 84 83 67 46
'DPAGT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.32

Table S6812.  Gene #685: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DPAGT1 MUTATED 3 1 0 2
DPAGT1 WILD-TYPE 92 73 121 78
'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 0.84

Table S6813.  Gene #685: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DPAGT1 MUTATED 0 1 2 2 1 0
DPAGT1 WILD-TYPE 52 63 70 102 39 59
'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.65

Table S6814.  Gene #685: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DPAGT1 MUTATED 5 0 1
DPAGT1 WILD-TYPE 212 75 98
'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6815.  Gene #685: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DPAGT1 MUTATED 2 2 1
DPAGT1 WILD-TYPE 119 106 71
'DPAGT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0939 (Fisher's exact test), Q value = 0.21

Table S6816.  Gene #685: 'DPAGT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DPAGT1 MUTATED 1 0 0 1 3
DPAGT1 WILD-TYPE 87 66 45 54 44
'KCNH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.4

Table S6817.  Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCNH4 MUTATED 4 3 3 0
KCNH4 WILD-TYPE 200 134 44 3
'KCNH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0811 (Fisher's exact test), Q value = 0.19

Table S6818.  Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCNH4 MUTATED 0 7 2 1 1
KCNH4 WILD-TYPE 39 89 42 87 79
'KCNH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.78

Table S6819.  Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCNH4 MUTATED 0 2 1 2 3
KCNH4 WILD-TYPE 26 77 72 80 55
'KCNH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0017 (Fisher's exact test), Q value = 0.021

Table S6820.  Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCNH4 MUTATED 0 5 1 2
KCNH4 WILD-TYPE 127 46 70 67

Figure S2623.  Get High-res Image Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S6821.  Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCNH4 MUTATED 1 1 6 1 2
KCNH4 WILD-TYPE 83 84 79 68 45
'KCNH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S6822.  Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCNH4 MUTATED 2 1 2 6
KCNH4 WILD-TYPE 93 73 119 74
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.44

Table S6823.  Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCNH4 MUTATED 3 3 3 1 0 1
KCNH4 WILD-TYPE 49 61 69 103 40 58
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S6824.  Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCNH4 MUTATED 9 1 1
KCNH4 WILD-TYPE 208 74 98
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0927 (Fisher's exact test), Q value = 0.21

Table S6825.  Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCNH4 MUTATED 5 1 5
KCNH4 WILD-TYPE 116 107 67
'KCNH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00015 (Fisher's exact test), Q value = 0.005

Table S6826.  Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCNH4 MUTATED 0 1 4 0 6
KCNH4 WILD-TYPE 88 65 41 55 41

Figure S2624.  Get High-res Image Gene #686: 'KCNH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TCF20 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00023 (Fisher's exact test), Q value = 0.0067

Table S6827.  Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TCF20 MUTATED 2 14 0 0
TCF20 WILD-TYPE 202 123 47 3

Figure S2625.  Get High-res Image Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TCF20 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S6828.  Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TCF20 MUTATED 2 6 1 1 3
TCF20 WILD-TYPE 37 90 43 87 77
'TCF20 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 0.78

Table S6829.  Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TCF20 MUTATED 2 5 2 3 3
TCF20 WILD-TYPE 24 74 71 79 55
'TCF20 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0597 (Fisher's exact test), Q value = 0.16

Table S6830.  Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TCF20 MUTATED 3 6 4 2
TCF20 WILD-TYPE 124 45 67 67
'TCF20 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.5

Table S6831.  Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TCF20 MUTATED 1 4 6 2 2
TCF20 WILD-TYPE 83 81 79 67 45
'TCF20 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 0.86

Table S6832.  Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TCF20 MUTATED 3 4 4 4
TCF20 WILD-TYPE 92 70 117 76
'TCF20 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0979 (Fisher's exact test), Q value = 0.21

Table S6833.  Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TCF20 MUTATED 3 7 2 2 2 1
TCF20 WILD-TYPE 49 57 70 102 38 58
'TCF20 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 0.53

Table S6834.  Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TCF20 MUTATED 12 3 2
TCF20 WILD-TYPE 205 72 97
'TCF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.49

Table S6835.  Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TCF20 MUTATED 4 3 5
TCF20 WILD-TYPE 117 105 67
'TCF20 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S6836.  Gene #687: 'TCF20 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TCF20 MUTATED 4 1 4 0 3
TCF20 WILD-TYPE 84 65 41 55 44
'EPB41 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0037 (Fisher's exact test), Q value = 0.033

Table S6837.  Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EPB41 MUTATED 1 10 2 0
EPB41 WILD-TYPE 203 127 45 3

Figure S2626.  Get High-res Image Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPB41 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0358 (Fisher's exact test), Q value = 0.12

Table S6838.  Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EPB41 MUTATED 1 7 1 0 1
EPB41 WILD-TYPE 38 89 43 88 79

Figure S2627.  Get High-res Image Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPB41 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 0.88

Table S6839.  Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EPB41 MUTATED 0 2 4 3 2
EPB41 WILD-TYPE 26 77 69 79 56
'EPB41 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00028 (Fisher's exact test), Q value = 0.0075

Table S6840.  Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EPB41 MUTATED 0 6 1 4
EPB41 WILD-TYPE 127 45 70 65

Figure S2628.  Get High-res Image Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPB41 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.063

Table S6841.  Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EPB41 MUTATED 0 4 7 1 0
EPB41 WILD-TYPE 84 81 78 68 47

Figure S2629.  Get High-res Image Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPB41 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00527 (Fisher's exact test), Q value = 0.04

Table S6842.  Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EPB41 MUTATED 2 4 0 6
EPB41 WILD-TYPE 93 70 121 74

Figure S2630.  Get High-res Image Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPB41 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0179 (Fisher's exact test), Q value = 0.079

Table S6843.  Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EPB41 MUTATED 4 5 1 1 2 0
EPB41 WILD-TYPE 48 59 71 103 38 59

Figure S2631.  Get High-res Image Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPB41 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 0.13

Table S6844.  Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EPB41 MUTATED 11 2 0
EPB41 WILD-TYPE 206 73 99

Figure S2632.  Get High-res Image Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPB41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 0.72

Table S6845.  Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EPB41 MUTATED 4 2 3
EPB41 WILD-TYPE 117 106 69
'EPB41 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.43

Table S6846.  Gene #688: 'EPB41 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EPB41 MUTATED 4 1 1 0 3
EPB41 WILD-TYPE 84 65 44 55 44
'ARSJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S6847.  Gene #689: 'ARSJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARSJ MUTATED 1 5 0 0
ARSJ WILD-TYPE 203 132 47 3
'ARSJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.53

Table S6848.  Gene #689: 'ARSJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARSJ MUTATED 1 3 1 0 1
ARSJ WILD-TYPE 38 93 43 88 79
'ARSJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S6849.  Gene #689: 'ARSJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARSJ MUTATED 1 3 1 0 0
ARSJ WILD-TYPE 25 76 72 82 58
'ARSJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.75

Table S6850.  Gene #689: 'ARSJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARSJ MUTATED 1 1 2 1
ARSJ WILD-TYPE 126 50 69 68
'ARSJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S6851.  Gene #689: 'ARSJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARSJ MUTATED 0 2 2 1 0
ARSJ WILD-TYPE 84 83 83 68 47
'ARSJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S6852.  Gene #689: 'ARSJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARSJ MUTATED 3 1 1 0
ARSJ WILD-TYPE 92 73 120 80
'ARSJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.59

Table S6853.  Gene #689: 'ARSJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARSJ MUTATED 1 1 1 1 2 0
ARSJ WILD-TYPE 51 63 71 103 38 59
'ARSJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.58

Table S6854.  Gene #689: 'ARSJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARSJ MUTATED 2 2 2
ARSJ WILD-TYPE 215 73 97
'ARSJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.8

Table S6855.  Gene #689: 'ARSJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARSJ MUTATED 2 1 2
ARSJ WILD-TYPE 119 107 70
'ARSJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S6856.  Gene #689: 'ARSJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARSJ MUTATED 2 1 1 0 1
ARSJ WILD-TYPE 86 65 44 55 46
'PNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S6857.  Gene #690: 'PNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PNMT MUTATED 4 7 0 0
PNMT WILD-TYPE 200 130 47 3
'PNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.868 (Fisher's exact test), Q value = 0.91

Table S6858.  Gene #690: 'PNMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PNMT MUTATED 0 4 1 2 2
PNMT WILD-TYPE 39 92 43 86 78
'PNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 0.9

Table S6859.  Gene #690: 'PNMT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PNMT MUTATED 1 2 2 2 3
PNMT WILD-TYPE 25 77 71 80 55
'PNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S6860.  Gene #690: 'PNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PNMT MUTATED 4 4 1 1
PNMT WILD-TYPE 123 47 70 68
'PNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 0.85

Table S6861.  Gene #690: 'PNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PNMT MUTATED 1 2 3 3 1
PNMT WILD-TYPE 83 83 82 66 46
'PNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.6

Table S6862.  Gene #690: 'PNMT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PNMT MUTATED 3 1 2 4
PNMT WILD-TYPE 92 73 119 76
'PNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 0.55

Table S6863.  Gene #690: 'PNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PNMT MUTATED 3 3 2 2 1 0
PNMT WILD-TYPE 49 61 70 102 39 59
'PNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S6864.  Gene #690: 'PNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PNMT MUTATED 8 1 2
PNMT WILD-TYPE 209 74 97
'PNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.55 (Fisher's exact test), Q value = 0.65

Table S6865.  Gene #690: 'PNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PNMT MUTATED 2 2 3
PNMT WILD-TYPE 119 106 69
'PNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S6866.  Gene #690: 'PNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PNMT MUTATED 1 2 1 0 3
PNMT WILD-TYPE 87 64 44 55 44
'AP3M2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00796 (Fisher's exact test), Q value = 0.05

Table S6867.  Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AP3M2 MUTATED 1 8 3 0
AP3M2 WILD-TYPE 203 129 44 3

Figure S2633.  Get High-res Image Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AP3M2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0148 (Fisher's exact test), Q value = 0.07

Table S6868.  Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AP3M2 MUTATED 1 6 2 0 0
AP3M2 WILD-TYPE 38 90 42 88 80

Figure S2634.  Get High-res Image Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AP3M2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 0.96

Table S6869.  Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AP3M2 MUTATED 0 3 3 2 2
AP3M2 WILD-TYPE 26 76 70 80 56
'AP3M2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00284 (Fisher's exact test), Q value = 0.028

Table S6870.  Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AP3M2 MUTATED 2 6 2 0
AP3M2 WILD-TYPE 125 45 69 69

Figure S2635.  Get High-res Image Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AP3M2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S6871.  Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AP3M2 MUTATED 0 2 5 3 2
AP3M2 WILD-TYPE 84 83 80 66 45
'AP3M2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S6872.  Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AP3M2 MUTATED 7 1 2 2
AP3M2 WILD-TYPE 88 73 119 78
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 0.21

Table S6873.  Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AP3M2 MUTATED 3 3 2 1 3 0
AP3M2 WILD-TYPE 49 61 70 103 37 59
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 0.95

Table S6874.  Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AP3M2 MUTATED 8 2 2
AP3M2 WILD-TYPE 209 73 97
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S6875.  Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AP3M2 MUTATED 2 2 2
AP3M2 WILD-TYPE 119 106 70
'AP3M2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S6876.  Gene #691: 'AP3M2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AP3M2 MUTATED 1 1 2 0 2
AP3M2 WILD-TYPE 87 65 43 55 45
'EHBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S6877.  Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EHBP1 MUTATED 6 8 0 0
EHBP1 WILD-TYPE 198 129 47 3
'EHBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.5

Table S6878.  Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EHBP1 MUTATED 1 6 2 1 2
EHBP1 WILD-TYPE 38 90 42 87 78
'EHBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 0.93

Table S6879.  Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EHBP1 MUTATED 1 4 3 3 1
EHBP1 WILD-TYPE 25 75 70 79 57
'EHBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S6880.  Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EHBP1 MUTATED 2 3 5 2
EHBP1 WILD-TYPE 125 48 66 67
'EHBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S6881.  Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EHBP1 MUTATED 1 1 9 2 1
EHBP1 WILD-TYPE 83 84 76 67 46

Figure S2636.  Get High-res Image Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EHBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 0.46

Table S6882.  Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EHBP1 MUTATED 3 2 3 6
EHBP1 WILD-TYPE 92 72 118 74
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S6883.  Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EHBP1 MUTATED 2 6 3 2 1 0
EHBP1 WILD-TYPE 50 58 69 102 39 59
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.43

Table S6884.  Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EHBP1 MUTATED 10 3 1
EHBP1 WILD-TYPE 207 72 98
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6885.  Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EHBP1 MUTATED 5 4 3
EHBP1 WILD-TYPE 116 104 69
'EHBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S6886.  Gene #692: 'EHBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EHBP1 MUTATED 6 1 3 1 1
EHBP1 WILD-TYPE 82 65 42 54 46
'CRAT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00793 (Fisher's exact test), Q value = 0.05

Table S6887.  Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CRAT MUTATED 1 8 3 0
CRAT WILD-TYPE 203 129 44 3

Figure S2637.  Get High-res Image Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CRAT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0556 (Fisher's exact test), Q value = 0.15

Table S6888.  Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CRAT MUTATED 3 3 2 0 1
CRAT WILD-TYPE 36 93 42 88 79
'CRAT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S6889.  Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CRAT MUTATED 1 2 4 0 3
CRAT WILD-TYPE 25 77 69 82 55
'CRAT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S6890.  Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CRAT MUTATED 4 4 1 1
CRAT WILD-TYPE 123 47 70 68
'CRAT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.44

Table S6891.  Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CRAT MUTATED 1 1 5 3 2
CRAT WILD-TYPE 83 84 80 66 45
'CRAT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 0.64

Table S6892.  Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CRAT MUTATED 3 3 2 4
CRAT WILD-TYPE 92 71 119 76
'CRAT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S6893.  Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CRAT MUTATED 3 5 1 1 1 1
CRAT WILD-TYPE 49 59 71 103 39 58
'CRAT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0384 (Fisher's exact test), Q value = 0.12

Table S6894.  Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CRAT MUTATED 11 0 1
CRAT WILD-TYPE 206 75 98

Figure S2638.  Get High-res Image Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.14

Table S6895.  Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CRAT MUTATED 3 0 4
CRAT WILD-TYPE 118 108 68

Figure S2639.  Get High-res Image Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CRAT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0868 (Fisher's exact test), Q value = 0.2

Table S6896.  Gene #693: 'CRAT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CRAT MUTATED 2 0 2 0 3
CRAT WILD-TYPE 86 66 43 55 44
'SMAP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S6897.  Gene #694: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SMAP2 MUTATED 1 4 0 0
SMAP2 WILD-TYPE 203 133 47 3
'SMAP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S6898.  Gene #694: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SMAP2 MUTATED 0 3 1 0 0
SMAP2 WILD-TYPE 39 93 43 88 80
'SMAP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S6899.  Gene #694: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SMAP2 MUTATED 0 2 3 0 0
SMAP2 WILD-TYPE 26 77 70 82 58
'SMAP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 0.49

Table S6900.  Gene #694: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SMAP2 MUTATED 2 2 1 0
SMAP2 WILD-TYPE 125 49 70 69
'SMAP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S6901.  Gene #694: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SMAP2 MUTATED 0 1 3 0 1
SMAP2 WILD-TYPE 84 84 82 69 46
'SMAP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S6902.  Gene #694: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SMAP2 MUTATED 3 1 0 1
SMAP2 WILD-TYPE 92 73 121 79
'SMAP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 0.41

Table S6903.  Gene #694: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SMAP2 MUTATED 0 3 1 1 0 0
SMAP2 WILD-TYPE 52 61 71 103 40 59
'SMAP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.6

Table S6904.  Gene #694: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SMAP2 MUTATED 4 1 0
SMAP2 WILD-TYPE 213 74 99
'SMAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.65

Table S6905.  Gene #694: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SMAP2 MUTATED 1 1 2
SMAP2 WILD-TYPE 120 107 70
'SMAP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S6906.  Gene #694: 'SMAP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SMAP2 MUTATED 1 1 2 0 0
SMAP2 WILD-TYPE 87 65 43 55 47
'APITD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.57

Table S6907.  Gene #695: 'APITD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
APITD1 MUTATED 2 3 0 0
APITD1 WILD-TYPE 202 134 47 3
'APITD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.18

Table S6908.  Gene #695: 'APITD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
APITD1 MUTATED 0 4 0 0 0
APITD1 WILD-TYPE 39 92 44 88 80
'APITD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.242 (Fisher's exact test), Q value = 0.37

Table S6909.  Gene #695: 'APITD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
APITD1 MUTATED 0 3 2 0 0
APITD1 WILD-TYPE 26 76 71 82 58
'APITD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6910.  Gene #695: 'APITD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
APITD1 MUTATED 2 1 1 1
APITD1 WILD-TYPE 125 50 70 68
'APITD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S6911.  Gene #695: 'APITD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
APITD1 MUTATED 0 2 3 0 0
APITD1 WILD-TYPE 84 83 82 69 47
'APITD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S6912.  Gene #695: 'APITD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
APITD1 MUTATED 1 2 0 2
APITD1 WILD-TYPE 94 72 121 78
'APITD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.884 (Fisher's exact test), Q value = 0.92

Table S6913.  Gene #695: 'APITD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
APITD1 MUTATED 1 1 1 1 1 0
APITD1 WILD-TYPE 51 63 71 103 39 59
'APITD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S6914.  Gene #695: 'APITD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
APITD1 MUTATED 3 1 1
APITD1 WILD-TYPE 214 74 98
'APITD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.76

Table S6915.  Gene #695: 'APITD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
APITD1 MUTATED 2 2 0
APITD1 WILD-TYPE 119 106 72
'APITD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 0.88

Table S6916.  Gene #695: 'APITD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
APITD1 MUTATED 2 1 0 0 1
APITD1 WILD-TYPE 86 65 45 55 46
'KIFAP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.071

Table S6917.  Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIFAP3 MUTATED 2 10 2 0
KIFAP3 WILD-TYPE 202 127 45 3

Figure S2640.  Get High-res Image Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIFAP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S6918.  Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIFAP3 MUTATED 0 8 0 3 0
KIFAP3 WILD-TYPE 39 88 44 85 80

Figure S2641.  Get High-res Image Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIFAP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 0.9

Table S6919.  Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIFAP3 MUTATED 1 2 3 2 3
KIFAP3 WILD-TYPE 25 77 70 80 55
'KIFAP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.12

Table S6920.  Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIFAP3 MUTATED 2 5 1 3
KIFAP3 WILD-TYPE 125 46 70 66

Figure S2642.  Get High-res Image Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIFAP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.57

Table S6921.  Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIFAP3 MUTATED 4 2 5 2 0
KIFAP3 WILD-TYPE 80 83 80 67 47
'KIFAP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.91

Table S6922.  Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIFAP3 MUTATED 4 3 3 3
KIFAP3 WILD-TYPE 91 71 118 77
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.8

Table S6923.  Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIFAP3 MUTATED 3 2 3 3 0 3
KIFAP3 WILD-TYPE 49 62 69 101 40 56
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.873 (Fisher's exact test), Q value = 0.91

Table S6924.  Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIFAP3 MUTATED 9 2 3
KIFAP3 WILD-TYPE 208 73 96
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 0.9

Table S6925.  Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIFAP3 MUTATED 4 3 3
KIFAP3 WILD-TYPE 117 105 69
'KIFAP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.079

Table S6926.  Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIFAP3 MUTATED 0 2 1 2 5
KIFAP3 WILD-TYPE 88 64 44 53 42

Figure S2643.  Get High-res Image Gene #696: 'KIFAP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ELL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00495 (Fisher's exact test), Q value = 0.038

Table S6927.  Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ELL2 MUTATED 3 12 0 0
ELL2 WILD-TYPE 201 125 47 3

Figure S2644.  Get High-res Image Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ELL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S6928.  Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ELL2 MUTATED 0 7 1 1 3
ELL2 WILD-TYPE 39 89 43 87 77
'ELL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.66

Table S6929.  Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ELL2 MUTATED 1 4 3 2 5
ELL2 WILD-TYPE 25 75 70 80 53
'ELL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S6930.  Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ELL2 MUTATED 5 5 3 2
ELL2 WILD-TYPE 122 46 68 67
'ELL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0594 (Fisher's exact test), Q value = 0.16

Table S6931.  Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ELL2 MUTATED 0 3 6 5 1
ELL2 WILD-TYPE 84 82 79 64 46
'ELL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 0.77

Table S6932.  Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ELL2 MUTATED 5 3 3 4
ELL2 WILD-TYPE 90 71 118 76
'ELL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S6933.  Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ELL2 MUTATED 3 5 4 2 1 0
ELL2 WILD-TYPE 49 59 68 102 39 59
'ELL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.36

Table S6934.  Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ELL2 MUTATED 10 4 1
ELL2 WILD-TYPE 207 71 98
'ELL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S6935.  Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ELL2 MUTATED 5 2 5
ELL2 WILD-TYPE 116 106 67
'ELL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 0.16

Table S6936.  Gene #697: 'ELL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ELL2 MUTATED 2 2 4 0 4
ELL2 WILD-TYPE 86 64 41 55 43
'CEP290 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S6937.  Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CEP290 MUTATED 5 8 1 0
CEP290 WILD-TYPE 199 129 46 3
'CEP290 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00923 (Fisher's exact test), Q value = 0.054

Table S6938.  Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CEP290 MUTATED 1 9 0 3 0
CEP290 WILD-TYPE 38 87 44 85 80

Figure S2645.  Get High-res Image Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CEP290 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.41

Table S6939.  Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CEP290 MUTATED 0 5 5 1 2
CEP290 WILD-TYPE 26 74 68 81 56
'CEP290 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00674 (Fisher's exact test), Q value = 0.045

Table S6940.  Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CEP290 MUTATED 3 7 1 2
CEP290 WILD-TYPE 124 44 70 67

Figure S2646.  Get High-res Image Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CEP290 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S6941.  Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CEP290 MUTATED 2 1 6 1 3
CEP290 WILD-TYPE 82 84 79 68 44
'CEP290 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S6942.  Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CEP290 MUTATED 3 2 2 6
CEP290 WILD-TYPE 92 72 119 74
'CEP290 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.11

Table S6943.  Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CEP290 MUTATED 5 2 3 0 1 3
CEP290 WILD-TYPE 47 62 69 104 39 56

Figure S2647.  Get High-res Image Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CEP290 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S6944.  Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CEP290 MUTATED 10 0 4
CEP290 WILD-TYPE 207 75 95
'CEP290 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S6945.  Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CEP290 MUTATED 7 2 4
CEP290 WILD-TYPE 114 106 68
'CEP290 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 0.08

Table S6946.  Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CEP290 MUTATED 3 0 1 3 6
CEP290 WILD-TYPE 85 66 44 52 41

Figure S2648.  Get High-res Image Gene #698: 'CEP290 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MBD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S6947.  Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MBD2 MUTATED 1 8 0 0
MBD2 WILD-TYPE 203 129 47 3

Figure S2649.  Get High-res Image Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MBD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0301 (Fisher's exact test), Q value = 0.11

Table S6948.  Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MBD2 MUTATED 0 5 1 0 0
MBD2 WILD-TYPE 39 91 43 88 80

Figure S2650.  Get High-res Image Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MBD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 0.82

Table S6949.  Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MBD2 MUTATED 1 3 2 1 1
MBD2 WILD-TYPE 25 76 71 81 57
'MBD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0032 (Fisher's exact test), Q value = 0.03

Table S6950.  Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MBD2 MUTATED 1 5 0 2
MBD2 WILD-TYPE 126 46 71 67

Figure S2651.  Get High-res Image Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MBD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.924 (Fisher's exact test), Q value = 0.96

Table S6951.  Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MBD2 MUTATED 1 2 3 1 1
MBD2 WILD-TYPE 83 83 82 68 46
'MBD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S6952.  Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MBD2 MUTATED 3 2 0 3
MBD2 WILD-TYPE 92 72 121 77
'MBD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S6953.  Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MBD2 MUTATED 2 4 1 1 0 1
MBD2 WILD-TYPE 50 60 71 103 40 58
'MBD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S6954.  Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MBD2 MUTATED 8 0 1
MBD2 WILD-TYPE 209 75 98
'MBD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S6955.  Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MBD2 MUTATED 4 0 2
MBD2 WILD-TYPE 117 108 70
'MBD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S6956.  Gene #699: 'MBD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MBD2 MUTATED 2 0 1 0 3
MBD2 WILD-TYPE 86 66 44 55 44
'DDX43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.24

Table S6957.  Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DDX43 MUTATED 3 8 2 0
DDX43 WILD-TYPE 201 129 45 3
'DDX43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S6958.  Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DDX43 MUTATED 1 4 1 3 0
DDX43 WILD-TYPE 38 92 43 85 80
'DDX43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S6959.  Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DDX43 MUTATED 0 2 2 1 5
DDX43 WILD-TYPE 26 77 71 81 53
'DDX43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0391 (Fisher's exact test), Q value = 0.12

Table S6960.  Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DDX43 MUTATED 2 5 1 2
DDX43 WILD-TYPE 125 46 70 67

Figure S2652.  Get High-res Image Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDX43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S6961.  Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DDX43 MUTATED 2 1 2 3 4
DDX43 WILD-TYPE 82 84 83 66 43
'DDX43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.67

Table S6962.  Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DDX43 MUTATED 4 1 3 4
DDX43 WILD-TYPE 91 73 118 76
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S6963.  Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DDX43 MUTATED 3 4 4 1 0 1
DDX43 WILD-TYPE 49 60 68 103 40 58
'DDX43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.52

Table S6964.  Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DDX43 MUTATED 10 1 2
DDX43 WILD-TYPE 207 74 97
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.6

Table S6965.  Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DDX43 MUTATED 4 1 2
DDX43 WILD-TYPE 117 107 70
'DDX43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 0.64

Table S6966.  Gene #700: 'DDX43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DDX43 MUTATED 3 0 1 1 2
DDX43 WILD-TYPE 85 66 44 54 45
'DDHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00178 (Fisher's exact test), Q value = 0.022

Table S6967.  Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DDHD1 MUTATED 1 11 1 0
DDHD1 WILD-TYPE 203 126 46 3

Figure S2653.  Get High-res Image Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DDHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.09

Table S6968.  Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DDHD1 MUTATED 1 4 3 0 0
DDHD1 WILD-TYPE 38 92 41 88 80

Figure S2654.  Get High-res Image Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DDHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S6969.  Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DDHD1 MUTATED 0 7 2 2 1
DDHD1 WILD-TYPE 26 72 71 80 57
'DDHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00163 (Fisher's exact test), Q value = 0.021

Table S6970.  Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DDHD1 MUTATED 0 4 6 2
DDHD1 WILD-TYPE 127 47 65 67

Figure S2655.  Get High-res Image Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DDHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S6971.  Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DDHD1 MUTATED 0 4 4 1 3
DDHD1 WILD-TYPE 84 81 81 68 44
'DDHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S6972.  Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DDHD1 MUTATED 3 3 1 5
DDHD1 WILD-TYPE 92 71 120 75
'DDHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0321 (Fisher's exact test), Q value = 0.11

Table S6973.  Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DDHD1 MUTATED 1 7 2 1 1 1
DDHD1 WILD-TYPE 51 57 70 103 39 58

Figure S2656.  Get High-res Image Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DDHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S6974.  Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DDHD1 MUTATED 11 1 1
DDHD1 WILD-TYPE 206 74 98
'DDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S6975.  Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DDHD1 MUTATED 1 1 5
DDHD1 WILD-TYPE 120 107 67

Figure S2657.  Get High-res Image Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DDHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S6976.  Gene #701: 'DDHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DDHD1 MUTATED 3 0 2 0 2
DDHD1 WILD-TYPE 85 66 43 55 45
'TMEM64 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.67

Table S6977.  Gene #702: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMEM64 MUTATED 3 4 0 0
TMEM64 WILD-TYPE 201 133 47 3
'TMEM64 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.6

Table S6978.  Gene #702: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TMEM64 MUTATED 0 4 0 1 1
TMEM64 WILD-TYPE 39 92 44 87 79
'TMEM64 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.4

Table S6979.  Gene #702: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMEM64 MUTATED 0 3 1 0 0
TMEM64 WILD-TYPE 26 76 72 82 58
'TMEM64 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S6980.  Gene #702: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMEM64 MUTATED 1 2 1 0
TMEM64 WILD-TYPE 126 49 70 69
'TMEM64 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.63

Table S6981.  Gene #702: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMEM64 MUTATED 2 1 3 0 0
TMEM64 WILD-TYPE 82 84 82 69 47
'TMEM64 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.3

Table S6982.  Gene #702: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMEM64 MUTATED 4 0 1 1
TMEM64 WILD-TYPE 91 74 120 79
'TMEM64 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S6983.  Gene #702: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMEM64 MUTATED 1 2 1 0 2 1
TMEM64 WILD-TYPE 51 62 71 104 38 58
'TMEM64 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.56

Table S6984.  Gene #702: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMEM64 MUTATED 4 0 3
TMEM64 WILD-TYPE 213 75 96
'TMEM64 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S6985.  Gene #702: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TMEM64 MUTATED 2 2 2
TMEM64 WILD-TYPE 119 106 70
'TMEM64 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.692 (Fisher's exact test), Q value = 0.77

Table S6986.  Gene #702: 'TMEM64 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TMEM64 MUTATED 3 0 1 1 1
TMEM64 WILD-TYPE 85 66 44 54 46
'ECSIT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S6987.  Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ECSIT MUTATED 1 4 1 0
ECSIT WILD-TYPE 203 133 46 3
'ECSIT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.698 (Fisher's exact test), Q value = 0.77

Table S6988.  Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ECSIT MUTATED 0 3 0 1 1
ECSIT WILD-TYPE 39 93 44 87 79
'ECSIT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S6989.  Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ECSIT MUTATED 0 1 1 1 0
ECSIT WILD-TYPE 26 78 72 81 58
'ECSIT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0409 (Fisher's exact test), Q value = 0.13

Table S6990.  Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ECSIT MUTATED 0 2 0 1
ECSIT WILD-TYPE 127 49 71 68

Figure S2658.  Get High-res Image Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ECSIT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.55

Table S6991.  Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ECSIT MUTATED 1 0 3 1 1
ECSIT WILD-TYPE 83 85 82 68 46
'ECSIT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.58

Table S6992.  Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ECSIT MUTATED 1 1 1 3
ECSIT WILD-TYPE 94 73 120 77
'ECSIT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.065

Table S6993.  Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ECSIT MUTATED 4 0 0 2 0 0
ECSIT WILD-TYPE 48 64 72 102 40 59

Figure S2659.  Get High-res Image Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ECSIT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S6994.  Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ECSIT MUTATED 3 0 3
ECSIT WILD-TYPE 214 75 96
'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.76

Table S6995.  Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ECSIT MUTATED 2 2 0
ECSIT WILD-TYPE 119 106 72
'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 0.46

Table S6996.  Gene #703: 'ECSIT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ECSIT MUTATED 1 0 0 1 2
ECSIT WILD-TYPE 87 66 45 54 45
'KIAA1543 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.061

Table S6997.  Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1543 MUTATED 3 12 1 0
KIAA1543 WILD-TYPE 201 125 46 3

Figure S2660.  Get High-res Image Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1543 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0138 (Fisher's exact test), Q value = 0.068

Table S6998.  Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1543 MUTATED 2 8 2 0 1
KIAA1543 WILD-TYPE 37 88 42 88 79

Figure S2661.  Get High-res Image Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1543 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S6999.  Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1543 MUTATED 1 5 6 1 3
KIAA1543 WILD-TYPE 25 74 67 81 55
'KIAA1543 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S7000.  Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1543 MUTATED 6 5 4 1
KIAA1543 WILD-TYPE 121 46 67 68
'KIAA1543 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 0.13

Table S7001.  Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1543 MUTATED 0 4 8 3 2
KIAA1543 WILD-TYPE 84 81 77 66 45

Figure S2662.  Get High-res Image Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1543 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0771 (Fisher's exact test), Q value = 0.19

Table S7002.  Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1543 MUTATED 6 2 2 7
KIAA1543 WILD-TYPE 89 72 119 73
'KIAA1543 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0048 (Fisher's exact test), Q value = 0.038

Table S7003.  Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1543 MUTATED 4 7 2 1 3 0
KIAA1543 WILD-TYPE 48 57 70 103 37 59

Figure S2663.  Get High-res Image Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1543 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0608 (Fisher's exact test), Q value = 0.16

Table S7004.  Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1543 MUTATED 13 0 4
KIAA1543 WILD-TYPE 204 75 95
'KIAA1543 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S7005.  Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1543 MUTATED 4 2 4
KIAA1543 WILD-TYPE 117 106 68
'KIAA1543 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0564 (Fisher's exact test), Q value = 0.15

Table S7006.  Gene #704: 'KIAA1543 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1543 MUTATED 4 0 3 0 3
KIAA1543 WILD-TYPE 84 66 42 55 44
'UPK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.19

Table S7007.  Gene #705: 'UPK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UPK2 MUTATED 0 3 1 0
UPK2 WILD-TYPE 204 134 46 3
'UPK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S7008.  Gene #705: 'UPK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UPK2 MUTATED 0 2 1 0 0
UPK2 WILD-TYPE 39 94 43 88 80
'UPK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 0.77

Table S7009.  Gene #705: 'UPK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UPK2 MUTATED 0 2 1 0 1
UPK2 WILD-TYPE 26 77 72 82 57
'UPK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S7010.  Gene #705: 'UPK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UPK2 MUTATED 1 2 1 0
UPK2 WILD-TYPE 126 49 70 69
'UPK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.81

Table S7011.  Gene #705: 'UPK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UPK2 MUTATED 0 1 1 0 1
UPK2 WILD-TYPE 84 84 84 69 46
'UPK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.018 (Fisher's exact test), Q value = 0.079

Table S7012.  Gene #705: 'UPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UPK2 MUTATED 0 0 0 3
UPK2 WILD-TYPE 95 74 121 77

Figure S2664.  Get High-res Image Gene #705: 'UPK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UPK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0959 (Fisher's exact test), Q value = 0.21

Table S7013.  Gene #705: 'UPK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UPK2 MUTATED 0 1 3 0 0 0
UPK2 WILD-TYPE 52 63 69 104 40 59
'UPK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S7014.  Gene #705: 'UPK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UPK2 MUTATED 4 0 0
UPK2 WILD-TYPE 213 75 99
'IGFBP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S7015.  Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IGFBP7 MUTATED 0 3 0 0
IGFBP7 WILD-TYPE 204 134 47 3
'IGFBP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S7016.  Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IGFBP7 MUTATED 0 3 0 0 0
IGFBP7 WILD-TYPE 39 93 44 88 80
'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0856 (Fisher's exact test), Q value = 0.2

Table S7017.  Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IGFBP7 MUTATED 0 0 3 0 0
IGFBP7 WILD-TYPE 84 85 82 69 47
'IGFBP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0177 (Fisher's exact test), Q value = 0.078

Table S7018.  Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IGFBP7 MUTATED 0 0 0 3
IGFBP7 WILD-TYPE 95 74 121 77

Figure S2665.  Get High-res Image Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0477 (Fisher's exact test), Q value = 0.14

Table S7019.  Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IGFBP7 MUTATED 2 2 0 0 0 0
IGFBP7 WILD-TYPE 50 62 72 104 40 59

Figure S2666.  Get High-res Image Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.52

Table S7020.  Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IGFBP7 MUTATED 4 0 0
IGFBP7 WILD-TYPE 213 75 99
'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S7021.  Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IGFBP7 MUTATED 2 0 1
IGFBP7 WILD-TYPE 119 108 71
'IGFBP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 0.13

Table S7022.  Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IGFBP7 MUTATED 0 0 1 0 2
IGFBP7 WILD-TYPE 88 66 44 55 45

Figure S2667.  Get High-res Image Gene #706: 'IGFBP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARPC5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S7023.  Gene #707: 'ARPC5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARPC5L MUTATED 0 3 0 0
ARPC5L WILD-TYPE 204 134 47 3
'ARPC5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.36

Table S7024.  Gene #707: 'ARPC5L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARPC5L MUTATED 0 2 1 0 0 0
ARPC5L WILD-TYPE 52 62 71 104 40 59
'ARPC5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S7025.  Gene #707: 'ARPC5L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARPC5L MUTATED 3 0 0
ARPC5L WILD-TYPE 214 75 99
'TEX13A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S7026.  Gene #708: 'TEX13A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TEX13A MUTATED 1 4 0 0
TEX13A WILD-TYPE 203 133 47 3
'TEX13A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.696 (Fisher's exact test), Q value = 0.77

Table S7027.  Gene #708: 'TEX13A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TEX13A MUTATED 0 3 0 1 1
TEX13A WILD-TYPE 39 93 44 87 79
'TEX13A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.67

Table S7028.  Gene #708: 'TEX13A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TEX13A MUTATED 0 2 1 0 0
TEX13A WILD-TYPE 26 77 72 82 58
'TEX13A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0583 (Fisher's exact test), Q value = 0.16

Table S7029.  Gene #708: 'TEX13A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TEX13A MUTATED 0 2 1 0
TEX13A WILD-TYPE 127 49 70 69
'TEX13A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.39

Table S7030.  Gene #708: 'TEX13A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TEX13A MUTATED 1 0 3 0 1
TEX13A WILD-TYPE 83 85 82 69 46
'TEX13A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.73

Table S7031.  Gene #708: 'TEX13A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TEX13A MUTATED 1 0 2 2
TEX13A WILD-TYPE 94 74 119 78
'TEX13A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S7032.  Gene #708: 'TEX13A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TEX13A MUTATED 2 1 1 0 0 1
TEX13A WILD-TYPE 50 63 71 104 40 58
'TEX13A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7033.  Gene #708: 'TEX13A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TEX13A MUTATED 3 1 1
TEX13A WILD-TYPE 214 74 98
'TEX13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.35

Table S7034.  Gene #708: 'TEX13A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TEX13A MUTATED 3 0 2
TEX13A WILD-TYPE 118 108 70
'TEX13A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.55

Table S7035.  Gene #708: 'TEX13A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TEX13A MUTATED 1 0 1 1 2
TEX13A WILD-TYPE 87 66 44 54 45
'KCNQ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00983 (Fisher's exact test), Q value = 0.056

Table S7036.  Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCNQ1 MUTATED 0 6 0 0
KCNQ1 WILD-TYPE 204 131 47 3

Figure S2668.  Get High-res Image Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNQ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S7037.  Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCNQ1 MUTATED 1 3 1 0 0
KCNQ1 WILD-TYPE 38 93 43 88 80
'KCNQ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.13

Table S7038.  Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCNQ1 MUTATED 0 0 3 0 3
KCNQ1 WILD-TYPE 26 79 70 82 55

Figure S2669.  Get High-res Image Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KCNQ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 6e-04 (Fisher's exact test), Q value = 0.012

Table S7039.  Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCNQ1 MUTATED 1 5 0 0
KCNQ1 WILD-TYPE 126 46 71 69

Figure S2670.  Get High-res Image Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNQ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.063

Table S7040.  Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCNQ1 MUTATED 0 0 5 1 0
KCNQ1 WILD-TYPE 84 85 80 68 47

Figure S2671.  Get High-res Image Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNQ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0326 (Fisher's exact test), Q value = 0.11

Table S7041.  Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCNQ1 MUTATED 1 1 0 4
KCNQ1 WILD-TYPE 94 73 121 76

Figure S2672.  Get High-res Image Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNQ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S7042.  Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCNQ1 MUTATED 3 1 0 2 0 0
KCNQ1 WILD-TYPE 49 63 72 102 40 59
'KCNQ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S7043.  Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCNQ1 MUTATED 4 0 2
KCNQ1 WILD-TYPE 213 75 97
'KCNQ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.31

Table S7044.  Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCNQ1 MUTATED 3 0 0
KCNQ1 WILD-TYPE 118 108 72
'KCNQ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S7045.  Gene #709: 'KCNQ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCNQ1 MUTATED 2 0 0 0 1
KCNQ1 WILD-TYPE 86 66 45 55 46
'HAPLN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.11

Table S7046.  Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HAPLN1 MUTATED 1 7 1 0
HAPLN1 WILD-TYPE 203 130 46 3

Figure S2673.  Get High-res Image Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HAPLN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S7047.  Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HAPLN1 MUTATED 1 4 1 0 1
HAPLN1 WILD-TYPE 38 92 43 88 79
'HAPLN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.72

Table S7048.  Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HAPLN1 MUTATED 1 3 1 1 2
HAPLN1 WILD-TYPE 25 76 72 81 56
'HAPLN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S7049.  Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HAPLN1 MUTATED 2 3 2 1
HAPLN1 WILD-TYPE 125 48 69 68
'HAPLN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.48

Table S7050.  Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HAPLN1 MUTATED 1 1 3 1 3
HAPLN1 WILD-TYPE 83 84 82 68 44
'HAPLN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00598 (Fisher's exact test), Q value = 0.043

Table S7051.  Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HAPLN1 MUTATED 2 1 0 6
HAPLN1 WILD-TYPE 93 73 121 74

Figure S2674.  Get High-res Image Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HAPLN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.6

Table S7052.  Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HAPLN1 MUTATED 1 4 1 2 0 1
HAPLN1 WILD-TYPE 51 60 71 102 40 58
'HAPLN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.94

Table S7053.  Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HAPLN1 MUTATED 6 1 2
HAPLN1 WILD-TYPE 211 74 97
'HAPLN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.65

Table S7054.  Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HAPLN1 MUTATED 2 2 3
HAPLN1 WILD-TYPE 119 106 69
'HAPLN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S7055.  Gene #710: 'HAPLN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HAPLN1 MUTATED 2 1 1 0 3
HAPLN1 WILD-TYPE 86 65 44 55 44
'AXIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S7056.  Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AXIN1 MUTATED 5 5 4 0
AXIN1 WILD-TYPE 199 132 43 3
'AXIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.1

Table S7057.  Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AXIN1 MUTATED 2 8 0 1 1
AXIN1 WILD-TYPE 37 88 44 87 79

Figure S2675.  Get High-res Image Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AXIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S7058.  Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AXIN1 MUTATED 0 6 4 1 2
AXIN1 WILD-TYPE 26 73 69 81 56
'AXIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00101 (Fisher's exact test), Q value = 0.016

Table S7059.  Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AXIN1 MUTATED 3 8 1 1
AXIN1 WILD-TYPE 124 43 70 68

Figure S2676.  Get High-res Image Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AXIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S7060.  Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AXIN1 MUTATED 1 2 6 2 2
AXIN1 WILD-TYPE 83 83 79 67 45
'AXIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0043 (Fisher's exact test), Q value = 0.035

Table S7061.  Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AXIN1 MUTATED 4 2 0 7
AXIN1 WILD-TYPE 91 72 121 73

Figure S2677.  Get High-res Image Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AXIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S7062.  Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AXIN1 MUTATED 5 2 3 2 1 1
AXIN1 WILD-TYPE 47 62 69 102 39 58
'AXIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S7063.  Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AXIN1 MUTATED 11 2 1
AXIN1 WILD-TYPE 206 73 98
'AXIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 0.7

Table S7064.  Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AXIN1 MUTATED 5 2 3
AXIN1 WILD-TYPE 116 106 69
'AXIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00037 (Fisher's exact test), Q value = 0.0087

Table S7065.  Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AXIN1 MUTATED 1 2 0 0 7
AXIN1 WILD-TYPE 87 64 45 55 40

Figure S2678.  Get High-res Image Gene #711: 'AXIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AOC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0046

Table S7066.  Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AOC3 MUTATED 0 11 0 0
AOC3 WILD-TYPE 204 126 47 3

Figure S2679.  Get High-res Image Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AOC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.18

Table S7067.  Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AOC3 MUTATED 0 5 0 0 1
AOC3 WILD-TYPE 39 91 44 88 79
'AOC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.56

Table S7068.  Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AOC3 MUTATED 1 1 3 1 3
AOC3 WILD-TYPE 25 78 70 81 55
'AOC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0289 (Fisher's exact test), Q value = 0.1

Table S7069.  Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AOC3 MUTATED 2 5 1 1
AOC3 WILD-TYPE 125 46 70 68

Figure S2680.  Get High-res Image Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AOC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S7070.  Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AOC3 MUTATED 1 1 5 2 2
AOC3 WILD-TYPE 83 84 80 67 45
'AOC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.06

Table S7071.  Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AOC3 MUTATED 5 1 0 5
AOC3 WILD-TYPE 90 73 121 75

Figure S2681.  Get High-res Image Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'AOC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 0.17

Table S7072.  Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AOC3 MUTATED 3 5 1 1 0 1
AOC3 WILD-TYPE 49 59 71 103 40 58
'AOC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S7073.  Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AOC3 MUTATED 9 0 2
AOC3 WILD-TYPE 208 75 97
'AOC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S7074.  Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AOC3 MUTATED 3 1 2
AOC3 WILD-TYPE 118 107 70
'AOC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S7075.  Gene #712: 'AOC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AOC3 MUTATED 2 0 1 0 3
AOC3 WILD-TYPE 86 66 44 55 44
'ANKRD23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00997 (Fisher's exact test), Q value = 0.057

Table S7076.  Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ANKRD23 MUTATED 0 6 0 0
ANKRD23 WILD-TYPE 204 131 47 3

Figure S2682.  Get High-res Image Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANKRD23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 0.19

Table S7077.  Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ANKRD23 MUTATED 0 4 1 0 0
ANKRD23 WILD-TYPE 39 92 43 88 80
'ANKRD23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 0.99

Table S7078.  Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ANKRD23 MUTATED 0 2 1 1 1
ANKRD23 WILD-TYPE 26 77 72 81 57
'ANKRD23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.096

Table S7079.  Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ANKRD23 MUTATED 0 3 1 1
ANKRD23 WILD-TYPE 127 48 70 68

Figure S2683.  Get High-res Image Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S7080.  Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ANKRD23 MUTATED 0 1 2 0 2
ANKRD23 WILD-TYPE 84 84 83 69 45
'ANKRD23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00731 (Fisher's exact test), Q value = 0.048

Table S7081.  Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ANKRD23 MUTATED 0 1 0 4
ANKRD23 WILD-TYPE 95 73 121 76

Figure S2684.  Get High-res Image Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.31

Table S7082.  Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ANKRD23 MUTATED 3 0 1 2 0 0
ANKRD23 WILD-TYPE 49 64 71 102 40 59
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S7083.  Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ANKRD23 MUTATED 4 2 0
ANKRD23 WILD-TYPE 213 73 99
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S7084.  Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ANKRD23 MUTATED 4 0 1
ANKRD23 WILD-TYPE 117 108 71
'ANKRD23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S7085.  Gene #713: 'ANKRD23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ANKRD23 MUTATED 1 1 0 0 3
ANKRD23 WILD-TYPE 87 65 45 55 44
'SOHLH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.648 (Fisher's exact test), Q value = 0.73

Table S7086.  Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SOHLH2 MUTATED 8 8 1 0
SOHLH2 WILD-TYPE 196 129 46 3
'SOHLH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.024 (Fisher's exact test), Q value = 0.094

Table S7087.  Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SOHLH2 MUTATED 0 9 0 5 1
SOHLH2 WILD-TYPE 39 87 44 83 79

Figure S2685.  Get High-res Image Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SOHLH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 0.89

Table S7088.  Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SOHLH2 MUTATED 0 5 4 4 2
SOHLH2 WILD-TYPE 26 74 69 78 56
'SOHLH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.73

Table S7089.  Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SOHLH2 MUTATED 6 4 2 3
SOHLH2 WILD-TYPE 121 47 69 66
'SOHLH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7090.  Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SOHLH2 MUTATED 3 4 3 3 2
SOHLH2 WILD-TYPE 81 81 82 66 45
'SOHLH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.357 (Fisher's exact test), Q value = 0.48

Table S7091.  Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SOHLH2 MUTATED 5 4 2 4
SOHLH2 WILD-TYPE 90 70 119 76
'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.754 (Fisher's exact test), Q value = 0.82

Table S7092.  Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SOHLH2 MUTATED 2 3 3 5 0 4
SOHLH2 WILD-TYPE 50 61 69 99 40 55
'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 0.56

Table S7093.  Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SOHLH2 MUTATED 7 4 6
SOHLH2 WILD-TYPE 210 71 93
'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7094.  Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SOHLH2 MUTATED 5 5 3
SOHLH2 WILD-TYPE 116 103 69
'SOHLH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0415 (Fisher's exact test), Q value = 0.13

Table S7095.  Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SOHLH2 MUTATED 1 3 1 2 6
SOHLH2 WILD-TYPE 87 63 44 53 41

Figure S2686.  Get High-res Image Gene #714: 'SOHLH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC26A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S7096.  Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC26A7 MUTATED 4 8 2 0
SLC26A7 WILD-TYPE 200 129 45 3
'SLC26A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S7097.  Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC26A7 MUTATED 2 7 1 2 2
SLC26A7 WILD-TYPE 37 89 43 86 78
'SLC26A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0983 (Fisher's exact test), Q value = 0.21

Table S7098.  Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC26A7 MUTATED 1 2 4 0 4
SLC26A7 WILD-TYPE 25 77 69 82 54
'SLC26A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0977 (Fisher's exact test), Q value = 0.21

Table S7099.  Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC26A7 MUTATED 3 5 2 1
SLC26A7 WILD-TYPE 124 46 69 68
'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S7100.  Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC26A7 MUTATED 2 1 5 4 3
SLC26A7 WILD-TYPE 82 84 80 65 44
'SLC26A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.13

Table S7101.  Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC26A7 MUTATED 8 0 4 3
SLC26A7 WILD-TYPE 87 74 117 77

Figure S2687.  Get High-res Image Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.61

Table S7102.  Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC26A7 MUTATED 3 3 3 2 3 1
SLC26A7 WILD-TYPE 49 61 69 102 37 58
'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 0.63

Table S7103.  Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC26A7 MUTATED 10 1 4
SLC26A7 WILD-TYPE 207 74 95
'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S7104.  Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC26A7 MUTATED 6 3 4
SLC26A7 WILD-TYPE 115 105 68
'SLC26A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0413 (Fisher's exact test), Q value = 0.13

Table S7105.  Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC26A7 MUTATED 4 0 3 1 5
SLC26A7 WILD-TYPE 84 66 42 54 42

Figure S2688.  Get High-res Image Gene #715: 'SLC26A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RHOBTB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00135 (Fisher's exact test), Q value = 0.019

Table S7106.  Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RHOBTB2 MUTATED 3 15 2 0
RHOBTB2 WILD-TYPE 201 122 45 3

Figure S2689.  Get High-res Image Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00806 (Fisher's exact test), Q value = 0.05

Table S7107.  Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RHOBTB2 MUTATED 0 11 2 2 1
RHOBTB2 WILD-TYPE 39 85 42 86 79

Figure S2690.  Get High-res Image Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0676 (Fisher's exact test), Q value = 0.17

Table S7108.  Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RHOBTB2 MUTATED 0 9 2 2 4
RHOBTB2 WILD-TYPE 26 70 71 80 54
'RHOBTB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00982 (Fisher's exact test), Q value = 0.056

Table S7109.  Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RHOBTB2 MUTATED 2 7 5 3
RHOBTB2 WILD-TYPE 125 44 66 66

Figure S2691.  Get High-res Image Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RHOBTB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 0.15

Table S7110.  Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RHOBTB2 MUTATED 1 2 9 3 2
RHOBTB2 WILD-TYPE 83 83 76 66 45
'RHOBTB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00376 (Fisher's exact test), Q value = 0.033

Table S7111.  Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RHOBTB2 MUTATED 6 4 0 7
RHOBTB2 WILD-TYPE 89 70 121 73

Figure S2692.  Get High-res Image Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.07

Table S7112.  Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RHOBTB2 MUTATED 3 8 5 2 2 0
RHOBTB2 WILD-TYPE 49 56 67 102 38 59

Figure S2693.  Get High-res Image Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0207 (Fisher's exact test), Q value = 0.086

Table S7113.  Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RHOBTB2 MUTATED 17 2 1
RHOBTB2 WILD-TYPE 200 73 98

Figure S2694.  Get High-res Image Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00719 (Fisher's exact test), Q value = 0.047

Table S7114.  Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RHOBTB2 MUTATED 6 1 8
RHOBTB2 WILD-TYPE 115 107 64

Figure S2695.  Get High-res Image Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RHOBTB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00593 (Fisher's exact test), Q value = 0.043

Table S7115.  Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RHOBTB2 MUTATED 4 1 3 0 7
RHOBTB2 WILD-TYPE 84 65 42 55 40

Figure S2696.  Get High-res Image Gene #716: 'RHOBTB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DGKA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.29

Table S7116.  Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DGKA MUTATED 2 5 2 0
DGKA WILD-TYPE 202 132 45 3
'DGKA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.77

Table S7117.  Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DGKA MUTATED 0 3 0 1 1
DGKA WILD-TYPE 39 93 44 87 79
'DGKA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S7118.  Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DGKA MUTATED 0 3 2 0 3
DGKA WILD-TYPE 26 76 71 82 55
'DGKA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S7119.  Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DGKA MUTATED 2 5 1 0
DGKA WILD-TYPE 125 46 70 69

Figure S2697.  Get High-res Image Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DGKA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S7120.  Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DGKA MUTATED 1 1 2 1 2
DGKA WILD-TYPE 83 84 83 68 45
'DGKA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S7121.  Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DGKA MUTATED 1 1 1 4
DGKA WILD-TYPE 94 73 120 76
'DGKA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00531 (Fisher's exact test), Q value = 0.04

Table S7122.  Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DGKA MUTATED 1 6 1 0 0 1
DGKA WILD-TYPE 51 58 71 104 40 58

Figure S2698.  Get High-res Image Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DGKA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S7123.  Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DGKA MUTATED 7 0 2
DGKA WILD-TYPE 210 75 97
'DGKA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S7124.  Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DGKA MUTATED 3 0 2
DGKA WILD-TYPE 118 108 70
'DGKA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.16

Table S7125.  Gene #717: 'DGKA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DGKA MUTATED 0 0 2 1 2
DGKA WILD-TYPE 88 66 43 54 45
'KIAA1797 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00683 (Fisher's exact test), Q value = 0.046

Table S7126.  Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1797 MUTATED 4 14 1 0
KIAA1797 WILD-TYPE 200 123 46 3

Figure S2699.  Get High-res Image Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1797 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.376 (Fisher's exact test), Q value = 0.5

Table S7127.  Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1797 MUTATED 2 7 3 2 2
KIAA1797 WILD-TYPE 37 89 41 86 78
'KIAA1797 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S7128.  Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1797 MUTATED 2 4 2 1 5
KIAA1797 WILD-TYPE 24 75 71 81 53
'KIAA1797 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.074

Table S7129.  Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1797 MUTATED 3 7 2 2
KIAA1797 WILD-TYPE 124 44 69 67

Figure S2700.  Get High-res Image Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1797 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00628 (Fisher's exact test), Q value = 0.044

Table S7130.  Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1797 MUTATED 1 2 11 3 1
KIAA1797 WILD-TYPE 83 83 74 66 46

Figure S2701.  Get High-res Image Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1797 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S7131.  Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1797 MUTATED 5 2 4 7
KIAA1797 WILD-TYPE 90 72 117 73
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S7132.  Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1797 MUTATED 5 8 2 3 0 1
KIAA1797 WILD-TYPE 47 56 70 101 40 58

Figure S2702.  Get High-res Image Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S7133.  Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1797 MUTATED 14 3 2
KIAA1797 WILD-TYPE 203 72 97
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.37

Table S7134.  Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1797 MUTATED 6 3 6
KIAA1797 WILD-TYPE 115 105 66
'KIAA1797 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S7135.  Gene #718: 'KIAA1797 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1797 MUTATED 3 2 4 2 4
KIAA1797 WILD-TYPE 85 64 41 53 43
'SERPINB10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00516 (Fisher's exact test), Q value = 0.039

Table S7136.  Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SERPINB10 MUTATED 0 7 1 0
SERPINB10 WILD-TYPE 204 130 46 3

Figure S2703.  Get High-res Image Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SERPINB10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S7137.  Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SERPINB10 MUTATED 1 4 2 0 1
SERPINB10 WILD-TYPE 38 92 42 88 79
'SERPINB10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.29

Table S7138.  Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SERPINB10 MUTATED 1 1 0 1 3
SERPINB10 WILD-TYPE 25 78 73 81 55
'SERPINB10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.718 (Fisher's exact test), Q value = 0.79

Table S7139.  Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SERPINB10 MUTATED 2 2 1 1
SERPINB10 WILD-TYPE 125 49 70 68
'SERPINB10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.11

Table S7140.  Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SERPINB10 MUTATED 0 0 5 2 1
SERPINB10 WILD-TYPE 84 85 80 67 46

Figure S2704.  Get High-res Image Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SERPINB10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0905 (Fisher's exact test), Q value = 0.2

Table S7141.  Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SERPINB10 MUTATED 3 0 1 4
SERPINB10 WILD-TYPE 92 74 120 76
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.13

Table S7142.  Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SERPINB10 MUTATED 3 3 1 0 1 0
SERPINB10 WILD-TYPE 49 61 71 104 39 59

Figure S2705.  Get High-res Image Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S7143.  Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SERPINB10 MUTATED 8 0 0
SERPINB10 WILD-TYPE 209 75 99

Figure S2706.  Get High-res Image Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S7144.  Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SERPINB10 MUTATED 4 1 3
SERPINB10 WILD-TYPE 117 107 69
'SERPINB10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S7145.  Gene #719: 'SERPINB10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SERPINB10 MUTATED 4 0 2 0 2
SERPINB10 WILD-TYPE 84 66 43 55 45
'SMCHD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S7146.  Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SMCHD1 MUTATED 6 7 1 0
SMCHD1 WILD-TYPE 198 130 46 3
'SMCHD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S7147.  Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SMCHD1 MUTATED 2 5 2 2 0
SMCHD1 WILD-TYPE 37 91 42 86 80
'SMCHD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S7148.  Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SMCHD1 MUTATED 1 4 3 0 3
SMCHD1 WILD-TYPE 25 75 70 82 55
'SMCHD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S7149.  Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SMCHD1 MUTATED 4 4 3 0
SMCHD1 WILD-TYPE 123 47 68 69
'SMCHD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.19

Table S7150.  Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SMCHD1 MUTATED 2 1 7 3 0
SMCHD1 WILD-TYPE 82 84 78 66 47
'SMCHD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S7151.  Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SMCHD1 MUTATED 4 1 2 6
SMCHD1 WILD-TYPE 91 73 119 74
'SMCHD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.098

Table S7152.  Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SMCHD1 MUTATED 3 4 5 0 0 2
SMCHD1 WILD-TYPE 49 60 67 104 40 57

Figure S2707.  Get High-res Image Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SMCHD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0515 (Fisher's exact test), Q value = 0.15

Table S7153.  Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SMCHD1 MUTATED 12 0 2
SMCHD1 WILD-TYPE 205 75 97
'SMCHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 0.2

Table S7154.  Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SMCHD1 MUTATED 5 0 2
SMCHD1 WILD-TYPE 116 108 70
'SMCHD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 0.41

Table S7155.  Gene #720: 'SMCHD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SMCHD1 MUTATED 2 0 1 1 3
SMCHD1 WILD-TYPE 86 66 44 54 44
'MOCS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.57

Table S7156.  Gene #721: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MOCS2 MUTATED 2 3 0 0
MOCS2 WILD-TYPE 202 134 47 3
'MOCS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.6

Table S7157.  Gene #721: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MOCS2 MUTATED 1 2 0 1 1
MOCS2 WILD-TYPE 25 77 73 81 57
'MOCS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7158.  Gene #721: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MOCS2 MUTATED 2 1 1 1
MOCS2 WILD-TYPE 125 50 70 68
'MOCS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.64

Table S7159.  Gene #721: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MOCS2 MUTATED 0 1 2 2 0
MOCS2 WILD-TYPE 84 84 83 67 47
'MOCS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 0.41

Table S7160.  Gene #721: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MOCS2 MUTATED 2 2 0 1
MOCS2 WILD-TYPE 93 72 121 79
'MOCS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S7161.  Gene #721: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MOCS2 MUTATED 1 3 1 0 0 0
MOCS2 WILD-TYPE 51 61 71 104 40 59
'MOCS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.38

Table S7162.  Gene #721: 'MOCS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MOCS2 MUTATED 5 0 0
MOCS2 WILD-TYPE 212 75 99
'DGKD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S7163.  Gene #722: 'DGKD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DGKD MUTATED 1 5 0 0
DGKD WILD-TYPE 203 132 47 3
'DGKD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S7164.  Gene #722: 'DGKD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DGKD MUTATED 0 4 0 1 0
DGKD WILD-TYPE 39 92 44 87 80
'DGKD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S7165.  Gene #722: 'DGKD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DGKD MUTATED 0 2 2 0 1
DGKD WILD-TYPE 26 77 71 82 57
'DGKD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.49

Table S7166.  Gene #722: 'DGKD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DGKD MUTATED 2 2 1 0
DGKD WILD-TYPE 125 49 70 69
'DGKD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S7167.  Gene #722: 'DGKD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DGKD MUTATED 1 1 3 0 1
DGKD WILD-TYPE 83 84 82 69 46
'DGKD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S7168.  Gene #722: 'DGKD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DGKD MUTATED 0 2 1 3
DGKD WILD-TYPE 95 72 120 77
'DGKD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 0.86

Table S7169.  Gene #722: 'DGKD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DGKD MUTATED 2 1 1 1 0 1
DGKD WILD-TYPE 50 63 71 103 40 58
'DGKD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7170.  Gene #722: 'DGKD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DGKD MUTATED 4 1 1
DGKD WILD-TYPE 213 74 98
'DGKD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S7171.  Gene #722: 'DGKD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DGKD MUTATED 3 2 0
DGKD WILD-TYPE 118 106 72
'DGKD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 0.73

Table S7172.  Gene #722: 'DGKD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DGKD MUTATED 1 1 0 1 2
DGKD WILD-TYPE 87 65 45 54 45
'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S7173.  Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
THEMIS MUTATED 0 11 0 0
THEMIS WILD-TYPE 204 126 47 3

Figure S2708.  Get High-res Image Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.326 (Fisher's exact test), Q value = 0.46

Table S7174.  Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
THEMIS MUTATED 1 5 0 1 1
THEMIS WILD-TYPE 38 91 44 87 79
'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 0.83

Table S7175.  Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
THEMIS MUTATED 1 3 3 1 2
THEMIS WILD-TYPE 25 76 70 81 56
'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.011

Table S7176.  Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
THEMIS MUTATED 0 6 3 1
THEMIS WILD-TYPE 127 45 68 68

Figure S2709.  Get High-res Image Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 0.13

Table S7177.  Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
THEMIS MUTATED 0 2 5 0 2
THEMIS WILD-TYPE 84 83 80 69 45

Figure S2710.  Get High-res Image Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 0.43

Table S7178.  Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
THEMIS MUTATED 2 2 1 4
THEMIS WILD-TYPE 93 72 120 76
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.1

Table S7179.  Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
THEMIS MUTATED 4 4 0 2 1 0
THEMIS WILD-TYPE 48 60 72 102 39 59

Figure S2711.  Get High-res Image Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.56

Table S7180.  Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
THEMIS MUTATED 7 3 1
THEMIS WILD-TYPE 210 72 98
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 0.69

Table S7181.  Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
THEMIS MUTATED 3 2 3
THEMIS WILD-TYPE 118 106 69
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.268 (Fisher's exact test), Q value = 0.4

Table S7182.  Gene #723: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
THEMIS MUTATED 2 1 2 0 3
THEMIS WILD-TYPE 86 65 43 55 44
'BMPR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S7183.  Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BMPR2 MUTATED 1 14 4 0
BMPR2 WILD-TYPE 203 123 43 3

Figure S2712.  Get High-res Image Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BMPR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S7184.  Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BMPR2 MUTATED 3 5 5 0 3
BMPR2 WILD-TYPE 36 91 39 88 77

Figure S2713.  Get High-res Image Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BMPR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S7185.  Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BMPR2 MUTATED 0 7 6 2 2
BMPR2 WILD-TYPE 26 72 67 80 56
'BMPR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S7186.  Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BMPR2 MUTATED 4 5 6 2
BMPR2 WILD-TYPE 123 46 65 67
'BMPR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.068

Table S7187.  Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BMPR2 MUTATED 0 3 9 3 3
BMPR2 WILD-TYPE 84 82 76 66 44

Figure S2714.  Get High-res Image Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BMPR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S7188.  Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BMPR2 MUTATED 7 0 1 10
BMPR2 WILD-TYPE 88 74 120 70

Figure S2715.  Get High-res Image Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.11

Table S7189.  Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BMPR2 MUTATED 3 8 4 3 1 0
BMPR2 WILD-TYPE 49 56 68 101 39 59

Figure S2716.  Get High-res Image Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BMPR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0883 (Fisher's exact test), Q value = 0.2

Table S7190.  Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BMPR2 MUTATED 14 4 1
BMPR2 WILD-TYPE 203 71 98
'BMPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S7191.  Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BMPR2 MUTATED 5 2 6
BMPR2 WILD-TYPE 116 106 66
'BMPR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S7192.  Gene #724: 'BMPR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BMPR2 MUTATED 4 2 2 0 5
BMPR2 WILD-TYPE 84 64 43 55 42
'R3HDM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00181 (Fisher's exact test), Q value = 0.022

Table S7193.  Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
R3HDM2 MUTATED 0 8 0 0
R3HDM2 WILD-TYPE 204 129 47 3

Figure S2717.  Get High-res Image Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'R3HDM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.64

Table S7194.  Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
R3HDM2 MUTATED 1 2 1 0 1
R3HDM2 WILD-TYPE 38 94 43 88 79
'R3HDM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.78

Table S7195.  Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
R3HDM2 MUTATED 0 3 3 1 1
R3HDM2 WILD-TYPE 26 76 70 81 57
'R3HDM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00326 (Fisher's exact test), Q value = 0.031

Table S7196.  Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
R3HDM2 MUTATED 1 5 2 0
R3HDM2 WILD-TYPE 126 46 69 69

Figure S2718.  Get High-res Image Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'R3HDM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.56

Table S7197.  Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
R3HDM2 MUTATED 0 2 2 2 2
R3HDM2 WILD-TYPE 84 83 83 67 45
'R3HDM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S7198.  Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
R3HDM2 MUTATED 3 3 0 2
R3HDM2 WILD-TYPE 92 71 121 78
'R3HDM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00671 (Fisher's exact test), Q value = 0.045

Table S7199.  Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
R3HDM2 MUTATED 0 6 2 1 0 0
R3HDM2 WILD-TYPE 52 58 70 103 40 59

Figure S2719.  Get High-res Image Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'R3HDM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0287 (Fisher's exact test), Q value = 0.1

Table S7200.  Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
R3HDM2 MUTATED 9 0 0
R3HDM2 WILD-TYPE 208 75 99

Figure S2720.  Get High-res Image Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'R3HDM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.2

Table S7201.  Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
R3HDM2 MUTATED 2 0 3
R3HDM2 WILD-TYPE 119 108 69
'R3HDM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S7202.  Gene #725: 'R3HDM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
R3HDM2 MUTATED 1 0 2 0 2
R3HDM2 WILD-TYPE 87 66 43 55 45
'BLMH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 0.77

Table S7203.  Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BLMH MUTATED 2 2 1 0
BLMH WILD-TYPE 202 135 46 3
'BLMH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S7204.  Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BLMH MUTATED 0 4 0 1 0
BLMH WILD-TYPE 39 92 44 87 80
'BLMH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S7205.  Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BLMH MUTATED 0 3 0 0 1
BLMH WILD-TYPE 26 76 73 82 57
'BLMH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0473 (Fisher's exact test), Q value = 0.14

Table S7206.  Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BLMH MUTATED 0 2 2 0
BLMH WILD-TYPE 127 49 69 69

Figure S2721.  Get High-res Image Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BLMH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.8

Table S7207.  Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BLMH MUTATED 0 1 2 1 1
BLMH WILD-TYPE 84 84 83 68 46
'BLMH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.64

Table S7208.  Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BLMH MUTATED 2 0 1 2
BLMH WILD-TYPE 93 74 120 78
'BLMH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S7209.  Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BLMH MUTATED 2 0 2 0 0 1
BLMH WILD-TYPE 50 64 70 104 40 58
'BLMH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S7210.  Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BLMH MUTATED 4 0 1
BLMH WILD-TYPE 213 75 98
'BLMH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S7211.  Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BLMH MUTATED 3 0 2
BLMH WILD-TYPE 118 108 70
'BLMH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00259 (Fisher's exact test), Q value = 0.027

Table S7212.  Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BLMH MUTATED 0 0 0 1 4
BLMH WILD-TYPE 88 66 45 54 43

Figure S2722.  Get High-res Image Gene #726: 'BLMH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLEKHO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00374 (Fisher's exact test), Q value = 0.033

Table S7213.  Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLEKHO1 MUTATED 0 7 0 0
PLEKHO1 WILD-TYPE 204 130 47 3

Figure S2723.  Get High-res Image Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.535 (Fisher's exact test), Q value = 0.64

Table S7214.  Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLEKHO1 MUTATED 1 2 1 0 1
PLEKHO1 WILD-TYPE 38 94 43 88 79
'PLEKHO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.49

Table S7215.  Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLEKHO1 MUTATED 0 2 3 0 2
PLEKHO1 WILD-TYPE 26 77 70 82 56
'PLEKHO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00728 (Fisher's exact test), Q value = 0.047

Table S7216.  Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLEKHO1 MUTATED 0 4 2 1
PLEKHO1 WILD-TYPE 127 47 69 68

Figure S2724.  Get High-res Image Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLEKHO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S7217.  Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLEKHO1 MUTATED 0 2 3 0 2
PLEKHO1 WILD-TYPE 84 83 82 69 45
'PLEKHO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.712 (Fisher's exact test), Q value = 0.78

Table S7218.  Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLEKHO1 MUTATED 2 2 1 2
PLEKHO1 WILD-TYPE 93 72 120 78
'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.016

Table S7219.  Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLEKHO1 MUTATED 2 5 0 0 0 0
PLEKHO1 WILD-TYPE 50 59 72 104 40 59

Figure S2725.  Get High-res Image Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S7220.  Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLEKHO1 MUTATED 6 1 0
PLEKHO1 WILD-TYPE 211 74 99
'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0191 (Fisher's exact test), Q value = 0.081

Table S7221.  Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLEKHO1 MUTATED 1 0 4
PLEKHO1 WILD-TYPE 120 108 68

Figure S2726.  Get High-res Image Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PLEKHO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.294 (Fisher's exact test), Q value = 0.42

Table S7222.  Gene #727: 'PLEKHO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLEKHO1 MUTATED 2 0 2 0 1
PLEKHO1 WILD-TYPE 86 66 43 55 46
'INPP5F MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S7223.  Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
INPP5F MUTATED 0 13 2 0
INPP5F WILD-TYPE 204 124 45 3

Figure S2727.  Get High-res Image Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INPP5F MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S7224.  Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
INPP5F MUTATED 1 6 2 1 1
INPP5F WILD-TYPE 38 90 42 87 79
'INPP5F MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.13

Table S7225.  Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
INPP5F MUTATED 0 5 3 0 5
INPP5F WILD-TYPE 26 74 70 82 53

Figure S2728.  Get High-res Image Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'INPP5F MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0058

Table S7226.  Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
INPP5F MUTATED 1 8 3 1
INPP5F WILD-TYPE 126 43 68 68

Figure S2729.  Get High-res Image Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'INPP5F MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0036 (Fisher's exact test), Q value = 0.033

Table S7227.  Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
INPP5F MUTATED 0 2 8 1 4
INPP5F WILD-TYPE 84 83 77 68 43

Figure S2730.  Get High-res Image Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'INPP5F MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S7228.  Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
INPP5F MUTATED 3 3 1 8
INPP5F WILD-TYPE 92 71 120 72

Figure S2731.  Get High-res Image Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'INPP5F MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S7229.  Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
INPP5F MUTATED 5 9 0 1 0 0
INPP5F WILD-TYPE 47 55 72 103 40 59

Figure S2732.  Get High-res Image Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'INPP5F MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0648 (Fisher's exact test), Q value = 0.17

Table S7230.  Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
INPP5F MUTATED 13 1 1
INPP5F WILD-TYPE 204 74 98
'INPP5F MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0937 (Fisher's exact test), Q value = 0.21

Table S7231.  Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
INPP5F MUTATED 5 1 5
INPP5F WILD-TYPE 116 107 67
'INPP5F MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0254 (Fisher's exact test), Q value = 0.098

Table S7232.  Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
INPP5F MUTATED 4 0 4 0 3
INPP5F WILD-TYPE 84 66 41 55 44

Figure S2733.  Get High-res Image Gene #728: 'INPP5F MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S7233.  Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NLRC5 MUTATED 3 19 1 0
NLRC5 WILD-TYPE 201 118 46 3

Figure S2734.  Get High-res Image Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NLRC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0178 (Fisher's exact test), Q value = 0.079

Table S7234.  Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NLRC5 MUTATED 1 9 3 0 3
NLRC5 WILD-TYPE 38 87 41 88 77

Figure S2735.  Get High-res Image Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NLRC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S7235.  Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NLRC5 MUTATED 2 10 4 2 3
NLRC5 WILD-TYPE 24 69 69 80 55
'NLRC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0213 (Fisher's exact test), Q value = 0.087

Table S7236.  Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NLRC5 MUTATED 4 8 6 3
NLRC5 WILD-TYPE 123 43 65 66

Figure S2736.  Get High-res Image Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NLRC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.1

Table S7237.  Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NLRC5 MUTATED 3 3 11 1 3
NLRC5 WILD-TYPE 81 82 74 68 44

Figure S2737.  Get High-res Image Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NLRC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 0.2

Table S7238.  Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NLRC5 MUTATED 6 2 4 9
NLRC5 WILD-TYPE 89 72 117 71
'NLRC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.12

Table S7239.  Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NLRC5 MUTATED 3 9 6 3 1 1
NLRC5 WILD-TYPE 49 55 66 101 39 58

Figure S2738.  Get High-res Image Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NLRC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.068 (Fisher's exact test), Q value = 0.17

Table S7240.  Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NLRC5 MUTATED 18 3 2
NLRC5 WILD-TYPE 199 72 97
'NLRC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.17

Table S7241.  Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NLRC5 MUTATED 6 2 7
NLRC5 WILD-TYPE 115 106 65
'NLRC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.13

Table S7242.  Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NLRC5 MUTATED 8 1 2 0 4
NLRC5 WILD-TYPE 80 65 43 55 43

Figure S2739.  Get High-res Image Gene #729: 'NLRC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MYCT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 0.93

Table S7243.  Gene #730: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MYCT1 MUTATED 5 2 1 0
MYCT1 WILD-TYPE 199 135 46 3
'MYCT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S7244.  Gene #730: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MYCT1 MUTATED 0 4 0 2 0
MYCT1 WILD-TYPE 39 92 44 86 80
'MYCT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S7245.  Gene #730: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MYCT1 MUTATED 0 1 4 0 1
MYCT1 WILD-TYPE 26 78 69 82 57
'MYCT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0791 (Fisher's exact test), Q value = 0.19

Table S7246.  Gene #730: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MYCT1 MUTATED 3 3 0 0
MYCT1 WILD-TYPE 124 48 71 69
'MYCT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.6

Table S7247.  Gene #730: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MYCT1 MUTATED 2 0 3 1 1
MYCT1 WILD-TYPE 82 85 82 68 46
'MYCT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 0.54

Table S7248.  Gene #730: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MYCT1 MUTATED 2 0 2 3
MYCT1 WILD-TYPE 93 74 119 77
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.16

Table S7249.  Gene #730: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MYCT1 MUTATED 2 3 0 0 1 2
MYCT1 WILD-TYPE 50 61 72 104 39 57
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S7250.  Gene #730: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MYCT1 MUTATED 5 0 3
MYCT1 WILD-TYPE 212 75 96
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S7251.  Gene #730: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MYCT1 MUTATED 5 0 1
MYCT1 WILD-TYPE 116 108 71
'MYCT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S7252.  Gene #730: 'MYCT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MYCT1 MUTATED 1 0 1 3 1
MYCT1 WILD-TYPE 87 66 44 52 46
'CDC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S7253.  Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDC6 MUTATED 3 3 2 0
CDC6 WILD-TYPE 201 134 45 3
'CDC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 0.95

Table S7254.  Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDC6 MUTATED 1 1 1 2 2
CDC6 WILD-TYPE 38 95 43 86 78
'CDC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S7255.  Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDC6 MUTATED 0 4 1 0 3
CDC6 WILD-TYPE 26 75 72 82 55
'CDC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.822 (Fisher's exact test), Q value = 0.87

Table S7256.  Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDC6 MUTATED 3 1 3 1
CDC6 WILD-TYPE 124 50 68 68
'CDC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 0.85

Table S7257.  Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDC6 MUTATED 1 3 2 1 0
CDC6 WILD-TYPE 83 82 83 68 47
'CDC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.14

Table S7258.  Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDC6 MUTATED 1 3 0 3
CDC6 WILD-TYPE 94 71 121 77

Figure S2740.  Get High-res Image Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CDC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S7259.  Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDC6 MUTATED 0 1 0 5 0 2
CDC6 WILD-TYPE 52 63 72 99 40 57
'CDC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S7260.  Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDC6 MUTATED 4 1 3
CDC6 WILD-TYPE 213 74 96
'CDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.11

Table S7261.  Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDC6 MUTATED 0 5 1
CDC6 WILD-TYPE 121 103 71

Figure S2741.  Get High-res Image Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CDC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.49

Table S7262.  Gene #731: 'CDC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDC6 MUTATED 2 1 0 3 0
CDC6 WILD-TYPE 86 65 45 52 47
'CDX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.19

Table S7263.  Gene #732: 'CDX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDX2 MUTATED 0 3 1 0
CDX2 WILD-TYPE 204 134 46 3
'CDX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S7264.  Gene #732: 'CDX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDX2 MUTATED 1 1 1 0 0
CDX2 WILD-TYPE 38 95 43 88 80
'CDX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 0.89

Table S7265.  Gene #732: 'CDX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDX2 MUTATED 0 1 2 1 0
CDX2 WILD-TYPE 26 78 71 81 58
'CDX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S7266.  Gene #732: 'CDX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDX2 MUTATED 1 2 0 1
CDX2 WILD-TYPE 126 49 71 68
'CDX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.79

Table S7267.  Gene #732: 'CDX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDX2 MUTATED 0 1 2 1 0
CDX2 WILD-TYPE 84 84 83 68 47
'CDX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S7268.  Gene #732: 'CDX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDX2 MUTATED 2 2 0 0
CDX2 WILD-TYPE 93 72 121 80
'CDX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.15

Table S7269.  Gene #732: 'CDX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDX2 MUTATED 0 3 1 0 0 0
CDX2 WILD-TYPE 52 61 71 104 40 59
'CDX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S7270.  Gene #732: 'CDX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDX2 MUTATED 4 0 0
CDX2 WILD-TYPE 213 75 99
'CDX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S7271.  Gene #732: 'CDX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDX2 MUTATED 1 0 2
CDX2 WILD-TYPE 120 108 70
'CDX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S7272.  Gene #732: 'CDX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDX2 MUTATED 1 0 2 0 0
CDX2 WILD-TYPE 87 66 43 55 47
'EFHA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00142 (Fisher's exact test), Q value = 0.019

Table S7273.  Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EFHA1 MUTATED 2 12 0 0
EFHA1 WILD-TYPE 202 125 47 3

Figure S2742.  Get High-res Image Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EFHA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00524 (Fisher's exact test), Q value = 0.04

Table S7274.  Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EFHA1 MUTATED 0 9 1 0 2
EFHA1 WILD-TYPE 39 87 43 88 78

Figure S2743.  Get High-res Image Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EFHA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0447 (Fisher's exact test), Q value = 0.13

Table S7275.  Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EFHA1 MUTATED 1 5 3 0 0
EFHA1 WILD-TYPE 25 74 70 82 58

Figure S2744.  Get High-res Image Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EFHA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.066

Table S7276.  Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EFHA1 MUTATED 2 5 2 0
EFHA1 WILD-TYPE 125 46 69 69

Figure S2745.  Get High-res Image Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EFHA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00327 (Fisher's exact test), Q value = 0.031

Table S7277.  Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EFHA1 MUTATED 0 2 9 1 1
EFHA1 WILD-TYPE 84 83 76 68 46

Figure S2746.  Get High-res Image Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EFHA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.11

Table S7278.  Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EFHA1 MUTATED 5 1 1 6
EFHA1 WILD-TYPE 90 73 120 74

Figure S2747.  Get High-res Image Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.1

Table S7279.  Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EFHA1 MUTATED 2 3 7 1 1 0
EFHA1 WILD-TYPE 50 61 65 103 39 59

Figure S2748.  Get High-res Image Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EFHA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S7280.  Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EFHA1 MUTATED 11 1 2
EFHA1 WILD-TYPE 206 74 97
'EFHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S7281.  Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EFHA1 MUTATED 4 2 5
EFHA1 WILD-TYPE 117 106 67
'EFHA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0529 (Fisher's exact test), Q value = 0.15

Table S7282.  Gene #733: 'EFHA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EFHA1 MUTATED 4 1 1 0 5
EFHA1 WILD-TYPE 84 65 44 55 42
'GPR124 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00155 (Fisher's exact test), Q value = 0.02

Table S7283.  Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPR124 MUTATED 2 13 2 0
GPR124 WILD-TYPE 202 124 45 3

Figure S2749.  Get High-res Image Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR124 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.12

Table S7284.  Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPR124 MUTATED 2 8 1 0 3
GPR124 WILD-TYPE 37 88 43 88 77

Figure S2750.  Get High-res Image Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR124 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S7285.  Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPR124 MUTATED 1 5 5 2 3
GPR124 WILD-TYPE 25 74 68 80 55
'GPR124 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0283 (Fisher's exact test), Q value = 0.1

Table S7286.  Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPR124 MUTATED 5 7 3 1
GPR124 WILD-TYPE 122 44 68 68

Figure S2751.  Get High-res Image Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR124 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0757 (Fisher's exact test), Q value = 0.18

Table S7287.  Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPR124 MUTATED 0 5 6 2 3
GPR124 WILD-TYPE 84 80 79 67 44
'GPR124 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S7288.  Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPR124 MUTATED 5 1 4 6
GPR124 WILD-TYPE 90 73 117 74
'GPR124 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S7289.  Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPR124 MUTATED 2 6 5 3 1 0
GPR124 WILD-TYPE 50 58 67 101 39 59
'GPR124 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.66

Table S7290.  Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPR124 MUTATED 12 2 3
GPR124 WILD-TYPE 205 73 96
'GPR124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.13

Table S7291.  Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPR124 MUTATED 4 2 7
GPR124 WILD-TYPE 117 106 65

Figure S2752.  Get High-res Image Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GPR124 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.19

Table S7292.  Gene #734: 'GPR124 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPR124 MUTATED 5 0 3 1 4
GPR124 WILD-TYPE 83 66 42 54 43
'TEX15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.095

Table S7293.  Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TEX15 MUTATED 8 17 2 0
TEX15 WILD-TYPE 196 120 45 3

Figure S2753.  Get High-res Image Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TEX15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00085 (Fisher's exact test), Q value = 0.014

Table S7294.  Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TEX15 MUTATED 4 12 2 2 0
TEX15 WILD-TYPE 35 84 42 86 80

Figure S2754.  Get High-res Image Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TEX15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.71

Table S7295.  Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TEX15 MUTATED 1 7 6 3 5
TEX15 WILD-TYPE 25 72 67 79 53
'TEX15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0527 (Fisher's exact test), Q value = 0.15

Table S7296.  Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TEX15 MUTATED 8 7 6 1
TEX15 WILD-TYPE 119 44 65 68
'TEX15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.62

Table S7297.  Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TEX15 MUTATED 3 6 9 5 3
TEX15 WILD-TYPE 81 79 76 64 44
'TEX15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0053 (Fisher's exact test), Q value = 0.04

Table S7298.  Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TEX15 MUTATED 12 4 2 8
TEX15 WILD-TYPE 83 70 119 72

Figure S2755.  Get High-res Image Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TEX15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 0.078

Table S7299.  Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TEX15 MUTATED 5 10 5 2 3 2
TEX15 WILD-TYPE 47 54 67 102 37 57

Figure S2756.  Get High-res Image Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TEX15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.086

Table S7300.  Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TEX15 MUTATED 22 2 3
TEX15 WILD-TYPE 195 73 96

Figure S2757.  Get High-res Image Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TEX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.38

Table S7301.  Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TEX15 MUTATED 8 4 7
TEX15 WILD-TYPE 113 104 65
'TEX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.065

Table S7302.  Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TEX15 MUTATED 6 1 3 1 8
TEX15 WILD-TYPE 82 65 42 54 39

Figure S2758.  Get High-res Image Gene #735: 'TEX15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CD33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S7303.  Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CD33 MUTATED 5 4 0 0
CD33 WILD-TYPE 199 133 47 3
'CD33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S7304.  Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CD33 MUTATED 0 2 1 5 0
CD33 WILD-TYPE 39 94 43 83 80
'CD33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.12

Table S7305.  Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CD33 MUTATED 0 3 5 0 0
CD33 WILD-TYPE 26 76 68 82 58

Figure S2759.  Get High-res Image Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CD33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0995 (Fisher's exact test), Q value = 0.22

Table S7306.  Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CD33 MUTATED 2 4 1 1
CD33 WILD-TYPE 125 47 70 68
'CD33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 0.95

Table S7307.  Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CD33 MUTATED 2 1 3 2 1
CD33 WILD-TYPE 82 84 82 67 46
'CD33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.967 (Fisher's exact test), Q value = 0.99

Table S7308.  Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CD33 MUTATED 3 1 3 2
CD33 WILD-TYPE 92 73 118 78
'CD33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 0.88

Table S7309.  Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CD33 MUTATED 0 2 1 2 1 2
CD33 WILD-TYPE 52 62 71 102 39 57
'CD33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S7310.  Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CD33 MUTATED 4 1 3
CD33 WILD-TYPE 213 74 96
'CD33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7311.  Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CD33 MUTATED 3 2 1
CD33 WILD-TYPE 118 106 71
'CD33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.886 (Fisher's exact test), Q value = 0.93

Table S7312.  Gene #736: 'CD33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CD33 MUTATED 1 1 1 2 1
CD33 WILD-TYPE 87 65 44 53 46
'GIPC3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00954 (Fisher's exact test), Q value = 0.055

Table S7313.  Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GIPC3 MUTATED 0 6 0 0
GIPC3 WILD-TYPE 204 131 47 3

Figure S2760.  Get High-res Image Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GIPC3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S7314.  Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GIPC3 MUTATED 0 6 1 0 0
GIPC3 WILD-TYPE 39 90 43 88 80

Figure S2761.  Get High-res Image Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GIPC3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S7315.  Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GIPC3 MUTATED 0 0 4 0 0
GIPC3 WILD-TYPE 26 79 69 82 58

Figure S2762.  Get High-res Image Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GIPC3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.38

Table S7316.  Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GIPC3 MUTATED 1 2 0 1
GIPC3 WILD-TYPE 126 49 71 68
'GIPC3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S7317.  Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GIPC3 MUTATED 0 2 4 0 1
GIPC3 WILD-TYPE 84 83 81 69 46
'GIPC3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00247 (Fisher's exact test), Q value = 0.026

Table S7318.  Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GIPC3 MUTATED 0 2 0 5
GIPC3 WILD-TYPE 95 72 121 75

Figure S2763.  Get High-res Image Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GIPC3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.577 (Fisher's exact test), Q value = 0.68

Table S7319.  Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GIPC3 MUTATED 2 1 2 1 1 0
GIPC3 WILD-TYPE 50 63 70 103 39 59
'GIPC3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7320.  Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GIPC3 MUTATED 4 1 2
GIPC3 WILD-TYPE 213 74 97
'GIPC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S7321.  Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GIPC3 MUTATED 5 1 0
GIPC3 WILD-TYPE 116 107 72
'GIPC3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.52

Table S7322.  Gene #737: 'GIPC3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GIPC3 MUTATED 4 1 0 0 1
GIPC3 WILD-TYPE 84 65 45 55 46
'PRAMEF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S7323.  Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRAMEF14 MUTATED 1 4 0 0
PRAMEF14 WILD-TYPE 203 133 47 3
'PRAMEF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.17

Table S7324.  Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PRAMEF14 MUTATED 1 4 0 0 0
PRAMEF14 WILD-TYPE 38 92 44 88 80
'PRAMEF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S7325.  Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRAMEF14 MUTATED 0 1 3 0 1
PRAMEF14 WILD-TYPE 26 78 70 82 57
'PRAMEF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0564 (Fisher's exact test), Q value = 0.15

Table S7326.  Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRAMEF14 MUTATED 1 3 0 1
PRAMEF14 WILD-TYPE 126 48 71 68
'PRAMEF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.57

Table S7327.  Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRAMEF14 MUTATED 1 2 0 0 1
PRAMEF14 WILD-TYPE 83 83 85 69 46
'PRAMEF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.5

Table S7328.  Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRAMEF14 MUTATED 0 2 1 1
PRAMEF14 WILD-TYPE 95 72 120 79
'PRAMEF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.74

Table S7329.  Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRAMEF14 MUTATED 1 0 1 3 0 0
PRAMEF14 WILD-TYPE 51 64 71 101 40 59
'PRAMEF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S7330.  Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRAMEF14 MUTATED 3 2 0
PRAMEF14 WILD-TYPE 214 73 99
'PRAMEF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.12

Table S7331.  Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PRAMEF14 MUTATED 0 1 3
PRAMEF14 WILD-TYPE 121 107 69

Figure S2764.  Get High-res Image Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PRAMEF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.58

Table S7332.  Gene #738: 'PRAMEF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PRAMEF14 MUTATED 1 1 0 0 2
PRAMEF14 WILD-TYPE 87 65 45 55 45
'PYGO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.18

Table S7333.  Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PYGO2 MUTATED 1 6 1 0
PYGO2 WILD-TYPE 203 131 46 3
'PYGO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 0.08

Table S7334.  Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PYGO2 MUTATED 1 6 1 0 0
PYGO2 WILD-TYPE 38 90 43 88 80

Figure S2765.  Get High-res Image Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PYGO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 0.99

Table S7335.  Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PYGO2 MUTATED 0 2 1 1 1
PYGO2 WILD-TYPE 26 77 72 81 57
'PYGO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.67 (Fisher's exact test), Q value = 0.75

Table S7336.  Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PYGO2 MUTATED 1 1 2 1
PYGO2 WILD-TYPE 126 50 69 68
'PYGO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S7337.  Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PYGO2 MUTATED 0 1 2 2 3
PYGO2 WILD-TYPE 84 84 83 67 44
'PYGO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.08

Table S7338.  Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PYGO2 MUTATED 2 1 0 5
PYGO2 WILD-TYPE 93 73 121 75

Figure S2766.  Get High-res Image Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 0.08

Table S7339.  Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PYGO2 MUTATED 4 2 1 0 1 0
PYGO2 WILD-TYPE 48 62 71 104 39 59

Figure S2767.  Get High-res Image Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PYGO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S7340.  Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PYGO2 MUTATED 7 1 0
PYGO2 WILD-TYPE 210 74 99
'PYGO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.19

Table S7341.  Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PYGO2 MUTATED 4 0 3
PYGO2 WILD-TYPE 117 108 69
'PYGO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 0.11

Table S7342.  Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PYGO2 MUTATED 2 0 1 0 4
PYGO2 WILD-TYPE 86 66 44 55 43

Figure S2768.  Get High-res Image Gene #739: 'PYGO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'AVEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S7343.  Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AVEN MUTATED 2 4 1 0
AVEN WILD-TYPE 202 133 46 3
'AVEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0813 (Fisher's exact test), Q value = 0.19

Table S7344.  Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AVEN MUTATED 0 4 1 0 0
AVEN WILD-TYPE 39 92 43 88 80
'AVEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S7345.  Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AVEN MUTATED 0 2 3 0 0
AVEN WILD-TYPE 26 77 70 82 58
'AVEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.49

Table S7346.  Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AVEN MUTATED 2 2 1 0
AVEN WILD-TYPE 125 49 70 69
'AVEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.022

Table S7347.  Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AVEN MUTATED 0 0 6 0 1
AVEN WILD-TYPE 84 85 79 69 46

Figure S2769.  Get High-res Image Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AVEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S7348.  Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AVEN MUTATED 1 1 1 4
AVEN WILD-TYPE 94 73 120 76
'AVEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0552 (Fisher's exact test), Q value = 0.15

Table S7349.  Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AVEN MUTATED 3 2 2 0 0 0
AVEN WILD-TYPE 49 62 70 104 40 59
'AVEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S7350.  Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AVEN MUTATED 6 0 1
AVEN WILD-TYPE 211 75 98
'AVEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S7351.  Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AVEN MUTATED 3 0 0
AVEN WILD-TYPE 118 108 72
'AVEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.63

Table S7352.  Gene #740: 'AVEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AVEN MUTATED 2 0 0 0 1
AVEN WILD-TYPE 86 66 45 55 46
'BAT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.14

Table S7353.  Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BAT4 MUTATED 0 3 2 0
BAT4 WILD-TYPE 204 134 45 3

Figure S2770.  Get High-res Image Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BAT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S7354.  Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BAT4 MUTATED 1 3 1 0 0
BAT4 WILD-TYPE 38 93 43 88 80
'BAT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 0.63

Table S7355.  Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BAT4 MUTATED 0 0 1 1 2
BAT4 WILD-TYPE 26 79 72 81 56
'BAT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0401 (Fisher's exact test), Q value = 0.13

Table S7356.  Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BAT4 MUTATED 0 2 0 2
BAT4 WILD-TYPE 127 49 71 67

Figure S2771.  Get High-res Image Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BAT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.5

Table S7357.  Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BAT4 MUTATED 0 2 2 0 0
BAT4 WILD-TYPE 84 83 83 69 47
'BAT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0737 (Fisher's exact test), Q value = 0.18

Table S7358.  Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BAT4 MUTATED 0 2 0 2
BAT4 WILD-TYPE 95 72 121 78
'BAT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 0.87

Table S7359.  Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BAT4 MUTATED 1 1 2 1 0 0
BAT4 WILD-TYPE 51 63 70 103 40 59
'BAT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.44

Table S7360.  Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BAT4 MUTATED 3 2 0
BAT4 WILD-TYPE 214 73 99
'BAT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.8

Table S7361.  Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BAT4 MUTATED 2 1 2
BAT4 WILD-TYPE 119 107 70
'BAT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S7362.  Gene #741: 'BAT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BAT4 MUTATED 3 1 0 0 1
BAT4 WILD-TYPE 85 65 45 55 46
'GPR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.34

Table S7363.  Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPR1 MUTATED 1 4 1 0
GPR1 WILD-TYPE 203 133 46 3
'GPR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 0.097

Table S7364.  Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPR1 MUTATED 1 5 0 0 0
GPR1 WILD-TYPE 38 91 44 88 80

Figure S2772.  Get High-res Image Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GPR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 0.63

Table S7365.  Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPR1 MUTATED 0 0 1 1 2
GPR1 WILD-TYPE 26 79 72 81 56
'GPR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00886 (Fisher's exact test), Q value = 0.053

Table S7366.  Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPR1 MUTATED 0 3 0 1
GPR1 WILD-TYPE 127 48 71 68

Figure S2773.  Get High-res Image Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S7367.  Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPR1 MUTATED 0 1 5 0 0
GPR1 WILD-TYPE 84 84 80 69 47

Figure S2774.  Get High-res Image Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0332 (Fisher's exact test), Q value = 0.11

Table S7368.  Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPR1 MUTATED 1 1 0 4
GPR1 WILD-TYPE 94 73 121 76

Figure S2775.  Get High-res Image Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.12

Table S7369.  Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPR1 MUTATED 2 0 2 0 2 0
GPR1 WILD-TYPE 50 64 70 104 38 59

Figure S2776.  Get High-res Image Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7370.  Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPR1 MUTATED 4 1 1
GPR1 WILD-TYPE 213 74 98
'GPR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.8

Table S7371.  Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPR1 MUTATED 2 1 2
GPR1 WILD-TYPE 119 107 70
'GPR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S7372.  Gene #742: 'GPR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPR1 MUTATED 4 0 0 0 1
GPR1 WILD-TYPE 84 66 45 55 46
'KCTD9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00637 (Fisher's exact test), Q value = 0.044

Table S7373.  Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCTD9 MUTATED 1 6 4 0
KCTD9 WILD-TYPE 203 131 43 3

Figure S2777.  Get High-res Image Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCTD9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.11

Table S7374.  Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCTD9 MUTATED 3 4 0 0 1
KCTD9 WILD-TYPE 36 92 44 88 79

Figure S2778.  Get High-res Image Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCTD9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.975 (Fisher's exact test), Q value = 1

Table S7375.  Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCTD9 MUTATED 1 3 2 2 2
KCTD9 WILD-TYPE 25 76 71 80 56
'KCTD9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S7376.  Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCTD9 MUTATED 3 3 2 2
KCTD9 WILD-TYPE 124 48 69 67
'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S7377.  Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCTD9 MUTATED 0 2 2 4 1
KCTD9 WILD-TYPE 84 83 83 65 46
'KCTD9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0247 (Fisher's exact test), Q value = 0.096

Table S7378.  Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCTD9 MUTATED 6 2 1 0
KCTD9 WILD-TYPE 89 72 120 80

Figure S2779.  Get High-res Image Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0417 (Fisher's exact test), Q value = 0.13

Table S7379.  Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCTD9 MUTATED 3 5 1 1 1 0
KCTD9 WILD-TYPE 49 59 71 103 39 59

Figure S2780.  Get High-res Image Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0869 (Fisher's exact test), Q value = 0.2

Table S7380.  Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCTD9 MUTATED 9 2 0
KCTD9 WILD-TYPE 208 73 99
'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0492 (Fisher's exact test), Q value = 0.14

Table S7381.  Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCTD9 MUTATED 6 0 2
KCTD9 WILD-TYPE 115 108 70

Figure S2781.  Get High-res Image Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KCTD9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S7382.  Gene #743: 'KCTD9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCTD9 MUTATED 3 0 2 0 3
KCTD9 WILD-TYPE 85 66 43 55 44
'ZNF514 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0494 (Fisher's exact test), Q value = 0.14

Table S7383.  Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF514 MUTATED 1 6 2 0
ZNF514 WILD-TYPE 203 131 45 3

Figure S2782.  Get High-res Image Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF514 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.15

Table S7384.  Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF514 MUTATED 2 3 0 0 0
ZNF514 WILD-TYPE 37 93 44 88 80
'ZNF514 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S7385.  Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF514 MUTATED 1 4 1 1 2
ZNF514 WILD-TYPE 25 75 72 81 56
'ZNF514 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00254 (Fisher's exact test), Q value = 0.027

Table S7386.  Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF514 MUTATED 1 6 1 1
ZNF514 WILD-TYPE 126 45 70 68

Figure S2783.  Get High-res Image Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF514 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 0.96

Table S7387.  Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF514 MUTATED 1 2 3 1 1
ZNF514 WILD-TYPE 83 83 82 68 46
'ZNF514 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.536 (Fisher's exact test), Q value = 0.64

Table S7388.  Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF514 MUTATED 2 2 1 3
ZNF514 WILD-TYPE 93 72 120 77
'ZNF514 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.17

Table S7389.  Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF514 MUTATED 1 5 1 1 1 0
ZNF514 WILD-TYPE 51 59 71 103 39 59
'ZNF514 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0962 (Fisher's exact test), Q value = 0.21

Table S7390.  Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF514 MUTATED 8 1 0
ZNF514 WILD-TYPE 209 74 99
'ZNF514 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.2

Table S7391.  Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF514 MUTATED 2 0 3
ZNF514 WILD-TYPE 119 108 69
'ZNF514 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S7392.  Gene #744: 'ZNF514 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF514 MUTATED 2 0 2 0 1
ZNF514 WILD-TYPE 86 66 43 55 46
'AFP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.083 (Fisher's exact test), Q value = 0.19

Table S7393.  Gene #745: 'AFP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AFP MUTATED 0 3 1 0
AFP WILD-TYPE 204 134 46 3
'AFP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.76

Table S7394.  Gene #745: 'AFP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AFP MUTATED 0 1 1 0 1
AFP WILD-TYPE 39 95 43 88 79
'AFP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.67

Table S7395.  Gene #745: 'AFP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AFP MUTATED 0 2 1 0 0
AFP WILD-TYPE 26 77 72 82 58
'AFP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 0.75

Table S7396.  Gene #745: 'AFP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AFP MUTATED 1 1 1 0
AFP WILD-TYPE 126 50 70 69
'AFP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.66

Table S7397.  Gene #745: 'AFP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AFP MUTATED 1 2 0 0 0
AFP WILD-TYPE 83 83 85 69 47
'AFP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S7398.  Gene #745: 'AFP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AFP MUTATED 0 1 1 1
AFP WILD-TYPE 95 73 120 79
'AFP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 0.97

Table S7399.  Gene #745: 'AFP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AFP MUTATED 0 1 1 2 0 0
AFP WILD-TYPE 52 63 71 102 40 59
'AFP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7400.  Gene #745: 'AFP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AFP MUTATED 2 1 1
AFP WILD-TYPE 215 74 98
'AFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 0.71

Table S7401.  Gene #745: 'AFP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AFP MUTATED 1 2 0
AFP WILD-TYPE 120 106 72
'AFP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7402.  Gene #745: 'AFP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AFP MUTATED 1 1 0 1 0
AFP WILD-TYPE 87 65 45 54 47
'TRIOBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00054 (Fisher's exact test), Q value = 0.011

Table S7403.  Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TRIOBP MUTATED 5 18 6 0
TRIOBP WILD-TYPE 199 119 41 3

Figure S2784.  Get High-res Image Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRIOBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0406 (Fisher's exact test), Q value = 0.13

Table S7404.  Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TRIOBP MUTATED 2 14 4 5 2
TRIOBP WILD-TYPE 37 82 40 83 78

Figure S2785.  Get High-res Image Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRIOBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.47

Table S7405.  Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TRIOBP MUTATED 1 4 4 5 8
TRIOBP WILD-TYPE 25 75 69 77 50
'TRIOBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.062

Table S7406.  Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TRIOBP MUTATED 4 9 4 5
TRIOBP WILD-TYPE 123 42 67 64

Figure S2786.  Get High-res Image Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S7407.  Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TRIOBP MUTATED 4 6 11 3 4
TRIOBP WILD-TYPE 80 79 74 66 43
'TRIOBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0497 (Fisher's exact test), Q value = 0.14

Table S7408.  Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TRIOBP MUTATED 6 5 5 12
TRIOBP WILD-TYPE 89 69 116 68

Figure S2787.  Get High-res Image Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0259 (Fisher's exact test), Q value = 0.099

Table S7409.  Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TRIOBP MUTATED 7 10 2 4 3 4
TRIOBP WILD-TYPE 45 54 70 100 37 55

Figure S2788.  Get High-res Image Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.435 (Fisher's exact test), Q value = 0.55

Table S7410.  Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TRIOBP MUTATED 20 5 5
TRIOBP WILD-TYPE 197 70 94
'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S7411.  Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TRIOBP MUTATED 10 3 11
TRIOBP WILD-TYPE 111 105 61

Figure S2789.  Get High-res Image Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TRIOBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00221 (Fisher's exact test), Q value = 0.024

Table S7412.  Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TRIOBP MUTATED 4 2 6 2 10
TRIOBP WILD-TYPE 84 64 39 53 37

Figure S2790.  Get High-res Image Gene #746: 'TRIOBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 0.21

Table S7413.  Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCAR1 MUTATED 6 12 1 0
CCAR1 WILD-TYPE 198 125 46 3
'CCAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S7414.  Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCAR1 MUTATED 3 8 2 2 3
CCAR1 WILD-TYPE 36 88 42 86 77
'CCAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S7415.  Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCAR1 MUTATED 1 5 3 1 6
CCAR1 WILD-TYPE 25 74 70 81 52
'CCAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S7416.  Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCAR1 MUTATED 6 6 1 3
CCAR1 WILD-TYPE 121 45 70 66
'CCAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.14

Table S7417.  Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCAR1 MUTATED 1 2 9 4 3
CCAR1 WILD-TYPE 83 83 76 65 44

Figure S2791.  Get High-res Image Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.163 (Fisher's exact test), Q value = 0.29

Table S7418.  Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCAR1 MUTATED 5 2 4 8
CCAR1 WILD-TYPE 90 72 117 72
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.43

Table S7419.  Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCAR1 MUTATED 6 3 4 4 1 1
CCAR1 WILD-TYPE 46 61 68 100 39 58
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.49

Table S7420.  Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCAR1 MUTATED 14 2 3
CCAR1 WILD-TYPE 203 73 96
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.69

Table S7421.  Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCAR1 MUTATED 8 4 3
CCAR1 WILD-TYPE 113 104 69
'CCAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S7422.  Gene #747: 'CCAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCAR1 MUTATED 7 0 2 3 3
CCAR1 WILD-TYPE 81 66 43 52 44
'TMEM127 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.18

Table S7423.  Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMEM127 MUTATED 0 4 1 0
TMEM127 WILD-TYPE 204 133 46 3
'TMEM127 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.56

Table S7424.  Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TMEM127 MUTATED 0 3 1 0 1
TMEM127 WILD-TYPE 39 93 43 88 79
'TMEM127 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S7425.  Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMEM127 MUTATED 0 0 2 0 2
TMEM127 WILD-TYPE 26 79 71 82 56
'TMEM127 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0185 (Fisher's exact test), Q value = 0.08

Table S7426.  Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMEM127 MUTATED 1 3 0 0
TMEM127 WILD-TYPE 126 48 71 69

Figure S2792.  Get High-res Image Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TMEM127 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.79

Table S7427.  Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMEM127 MUTATED 0 1 2 1 1
TMEM127 WILD-TYPE 84 84 83 68 46
'TMEM127 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.544 (Fisher's exact test), Q value = 0.65

Table S7428.  Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMEM127 MUTATED 2 0 1 2
TMEM127 WILD-TYPE 93 74 120 78
'TMEM127 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.36

Table S7429.  Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMEM127 MUTATED 1 2 2 0 0 0
TMEM127 WILD-TYPE 51 62 70 104 40 59
'TMEM127 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 0.88

Table S7430.  Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMEM127 MUTATED 4 0 1
TMEM127 WILD-TYPE 213 75 98
'TMEM127 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S7431.  Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TMEM127 MUTATED 2 0 2
TMEM127 WILD-TYPE 119 108 70
'TMEM127 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S7432.  Gene #748: 'TMEM127 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TMEM127 MUTATED 1 0 2 0 1
TMEM127 WILD-TYPE 87 66 43 55 46
'ZNF142 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S7433.  Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF142 MUTATED 1 15 3 0
ZNF142 WILD-TYPE 203 122 44 3

Figure S2793.  Get High-res Image Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF142 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00309 (Fisher's exact test), Q value = 0.03

Table S7434.  Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF142 MUTATED 2 10 2 1 0
ZNF142 WILD-TYPE 37 86 42 87 80

Figure S2794.  Get High-res Image Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF142 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.14

Table S7435.  Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF142 MUTATED 0 6 4 1 7
ZNF142 WILD-TYPE 26 73 69 81 51

Figure S2795.  Get High-res Image Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ZNF142 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S7436.  Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF142 MUTATED 3 12 2 1
ZNF142 WILD-TYPE 124 39 69 68

Figure S2796.  Get High-res Image Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF142 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 9e-05 (Fisher's exact test), Q value = 0.0037

Table S7437.  Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF142 MUTATED 0 1 11 1 4
ZNF142 WILD-TYPE 84 84 74 68 43

Figure S2797.  Get High-res Image Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF142 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00031 (Fisher's exact test), Q value = 0.0079

Table S7438.  Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF142 MUTATED 5 2 0 10
ZNF142 WILD-TYPE 90 72 121 70

Figure S2798.  Get High-res Image Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF142 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0588 (Fisher's exact test), Q value = 0.16

Table S7439.  Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF142 MUTATED 6 5 2 5 1 0
ZNF142 WILD-TYPE 46 59 70 99 39 59
'ZNF142 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S7440.  Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF142 MUTATED 15 1 3
ZNF142 WILD-TYPE 202 74 96
'ZNF142 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S7441.  Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF142 MUTATED 6 3 5
ZNF142 WILD-TYPE 115 105 67
'ZNF142 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0808 (Fisher's exact test), Q value = 0.19

Table S7442.  Gene #749: 'ZNF142 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF142 MUTATED 4 1 2 1 6
ZNF142 WILD-TYPE 84 65 43 54 41
'MRPS5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.1

Table S7443.  Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MRPS5 MUTATED 0 5 1 0
MRPS5 WILD-TYPE 204 132 46 3

Figure S2799.  Get High-res Image Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MRPS5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.091 (Fisher's exact test), Q value = 0.2

Table S7444.  Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MRPS5 MUTATED 1 5 0 0 1
MRPS5 WILD-TYPE 38 91 44 88 79
'MRPS5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.93

Table S7445.  Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MRPS5 MUTATED 0 2 1 1 2
MRPS5 WILD-TYPE 26 77 72 81 56
'MRPS5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.11

Table S7446.  Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MRPS5 MUTATED 0 3 2 1
MRPS5 WILD-TYPE 127 48 69 68

Figure S2800.  Get High-res Image Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00157 (Fisher's exact test), Q value = 0.02

Table S7447.  Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MRPS5 MUTATED 0 0 6 0 1
MRPS5 WILD-TYPE 84 85 79 69 46

Figure S2801.  Get High-res Image Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MRPS5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 0.66

Table S7448.  Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MRPS5 MUTATED 2 1 1 3
MRPS5 WILD-TYPE 93 73 120 77
'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S7449.  Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MRPS5 MUTATED 2 2 2 0 1 0
MRPS5 WILD-TYPE 50 62 70 104 39 59
'MRPS5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S7450.  Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MRPS5 MUTATED 5 2 0
MRPS5 WILD-TYPE 212 73 99
'MRPS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00743 (Fisher's exact test), Q value = 0.048

Table S7451.  Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MRPS5 MUTATED 2 0 5
MRPS5 WILD-TYPE 119 108 67

Figure S2802.  Get High-res Image Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MRPS5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.33

Table S7452.  Gene #750: 'MRPS5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MRPS5 MUTATED 3 0 2 0 2
MRPS5 WILD-TYPE 85 66 43 55 45
'CEP250 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00184 (Fisher's exact test), Q value = 0.022

Table S7453.  Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CEP250 MUTATED 3 14 4 0
CEP250 WILD-TYPE 201 123 43 3

Figure S2803.  Get High-res Image Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CEP250 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.0076

Table S7454.  Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CEP250 MUTATED 4 10 0 1 0
CEP250 WILD-TYPE 35 86 44 87 80

Figure S2804.  Get High-res Image Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CEP250 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00118 (Fisher's exact test), Q value = 0.017

Table S7455.  Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CEP250 MUTATED 0 4 10 0 6
CEP250 WILD-TYPE 26 75 63 82 52

Figure S2805.  Get High-res Image Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CEP250 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S7456.  Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CEP250 MUTATED 3 14 2 1
CEP250 WILD-TYPE 124 37 69 68

Figure S2806.  Get High-res Image Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CEP250 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.076

Table S7457.  Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CEP250 MUTATED 1 2 9 3 5
CEP250 WILD-TYPE 83 83 76 66 42

Figure S2807.  Get High-res Image Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CEP250 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S7458.  Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CEP250 MUTATED 5 1 1 13
CEP250 WILD-TYPE 90 73 120 67

Figure S2808.  Get High-res Image Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CEP250 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.32

Table S7459.  Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CEP250 MUTATED 4 6 6 3 1 1
CEP250 WILD-TYPE 48 58 66 101 39 58
'CEP250 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00281 (Fisher's exact test), Q value = 0.028

Table S7460.  Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CEP250 MUTATED 19 1 1
CEP250 WILD-TYPE 198 74 98

Figure S2809.  Get High-res Image Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CEP250 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S7461.  Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CEP250 MUTATED 8 3 2
CEP250 WILD-TYPE 113 105 70
'CEP250 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.13

Table S7462.  Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CEP250 MUTATED 6 1 0 1 5
CEP250 WILD-TYPE 82 65 45 54 42

Figure S2810.  Get High-res Image Gene #751: 'CEP250 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.12

Table S7463.  Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARMC4 MUTATED 4 11 3 0
ARMC4 WILD-TYPE 200 126 44 3

Figure S2811.  Get High-res Image Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0704 (Fisher's exact test), Q value = 0.18

Table S7464.  Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARMC4 MUTATED 1 10 1 4 1
ARMC4 WILD-TYPE 38 86 43 84 79
'ARMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 0.54

Table S7465.  Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARMC4 MUTATED 1 2 3 2 5
ARMC4 WILD-TYPE 25 77 70 80 53
'ARMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00486 (Fisher's exact test), Q value = 0.038

Table S7466.  Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARMC4 MUTATED 1 6 2 4
ARMC4 WILD-TYPE 126 45 69 65

Figure S2812.  Get High-res Image Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.17

Table S7467.  Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARMC4 MUTATED 3 4 8 0 3
ARMC4 WILD-TYPE 81 81 77 69 44
'ARMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S7468.  Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARMC4 MUTATED 2 4 3 9
ARMC4 WILD-TYPE 93 70 118 71

Figure S2813.  Get High-res Image Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S7469.  Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARMC4 MUTATED 4 1 4 3 4 2
ARMC4 WILD-TYPE 48 63 68 101 36 57
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7470.  Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARMC4 MUTATED 10 3 5
ARMC4 WILD-TYPE 207 72 94
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.67

Table S7471.  Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARMC4 MUTATED 7 7 2
ARMC4 WILD-TYPE 114 101 70
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S7472.  Gene #752: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARMC4 MUTATED 5 3 0 4 4
ARMC4 WILD-TYPE 83 63 45 51 43
'PCF11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.071

Table S7473.  Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PCF11 MUTATED 6 15 1 0
PCF11 WILD-TYPE 198 122 46 3

Figure S2814.  Get High-res Image Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCF11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S7474.  Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PCF11 MUTATED 3 9 1 3 2
PCF11 WILD-TYPE 36 87 43 85 78
'PCF11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0619 (Fisher's exact test), Q value = 0.16

Table S7475.  Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PCF11 MUTATED 1 3 8 1 5
PCF11 WILD-TYPE 25 76 65 81 53
'PCF11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0214 (Fisher's exact test), Q value = 0.088

Table S7476.  Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PCF11 MUTATED 6 8 2 2
PCF11 WILD-TYPE 121 43 69 67

Figure S2815.  Get High-res Image Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PCF11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S7477.  Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PCF11 MUTATED 3 2 8 4 3
PCF11 WILD-TYPE 81 83 77 65 44
'PCF11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.5

Table S7478.  Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PCF11 MUTATED 6 3 4 7
PCF11 WILD-TYPE 89 71 117 73
'PCF11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S7479.  Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PCF11 MUTATED 6 6 4 3 1 2
PCF11 WILD-TYPE 46 58 68 101 39 57
'PCF11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S7480.  Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PCF11 MUTATED 15 3 4
PCF11 WILD-TYPE 202 72 95
'PCF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S7481.  Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PCF11 MUTATED 10 3 3
PCF11 WILD-TYPE 111 105 69
'PCF11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.67

Table S7482.  Gene #753: 'PCF11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PCF11 MUTATED 8 2 2 2 2
PCF11 WILD-TYPE 80 64 43 53 45
'C2ORF76 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.027 (Fisher's exact test), Q value = 0.1

Table S7483.  Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C2ORF76 MUTATED 1 2 0 1
C2ORF76 WILD-TYPE 203 135 47 2

Figure S2816.  Get High-res Image Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C2ORF76 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.31

Table S7484.  Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C2ORF76 MUTATED 0 3 0 0 0
C2ORF76 WILD-TYPE 39 93 44 88 80
'C2ORF76 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7485.  Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C2ORF76 MUTATED 0 1 1 1 0
C2ORF76 WILD-TYPE 26 78 72 81 58
'C2ORF76 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S7486.  Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C2ORF76 MUTATED 0 1 1 1
C2ORF76 WILD-TYPE 127 50 70 68
'C2ORF76 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.81 (Fisher's exact test), Q value = 0.86

Table S7487.  Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C2ORF76 MUTATED 0 1 1 1 1
C2ORF76 WILD-TYPE 84 84 84 68 46
'C2ORF76 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.53

Table S7488.  Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C2ORF76 MUTATED 2 1 0 1
C2ORF76 WILD-TYPE 93 73 121 79
'C2ORF76 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.5

Table S7489.  Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C2ORF76 MUTATED 1 0 0 3 0 0
C2ORF76 WILD-TYPE 51 64 72 101 40 59
'C2ORF76 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7490.  Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C2ORF76 MUTATED 2 1 1
C2ORF76 WILD-TYPE 215 74 98
'C2ORF76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S7491.  Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C2ORF76 MUTATED 1 2 0
C2ORF76 WILD-TYPE 120 106 72
'C2ORF76 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.86

Table S7492.  Gene #754: 'C2ORF76 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C2ORF76 MUTATED 2 1 0 0 0
C2ORF76 WILD-TYPE 86 65 45 55 47
'MBNL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.076

Table S7493.  Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MBNL2 MUTATED 2 9 0 0
MBNL2 WILD-TYPE 202 128 47 3

Figure S2817.  Get High-res Image Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MBNL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.099

Table S7494.  Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MBNL2 MUTATED 0 6 0 0 1
MBNL2 WILD-TYPE 39 90 44 88 79

Figure S2818.  Get High-res Image Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MBNL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.37

Table S7495.  Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MBNL2 MUTATED 1 3 4 0 2
MBNL2 WILD-TYPE 25 76 69 82 56
'MBNL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S7496.  Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MBNL2 MUTATED 3 4 2 1
MBNL2 WILD-TYPE 124 47 69 68
'MBNL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.48

Table S7497.  Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MBNL2 MUTATED 1 5 2 2 0
MBNL2 WILD-TYPE 83 80 83 67 47
'MBNL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0605 (Fisher's exact test), Q value = 0.16

Table S7498.  Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MBNL2 MUTATED 4 3 0 3
MBNL2 WILD-TYPE 91 71 121 77
'MBNL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S7499.  Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MBNL2 MUTATED 4 3 0 2 1 1
MBNL2 WILD-TYPE 48 61 72 102 39 58
'MBNL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 0.89

Table S7500.  Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MBNL2 MUTATED 7 1 3
MBNL2 WILD-TYPE 210 74 96
'MBNL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S7501.  Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MBNL2 MUTATED 4 2 0
MBNL2 WILD-TYPE 117 106 72
'MBNL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.61

Table S7502.  Gene #755: 'MBNL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MBNL2 MUTATED 2 2 0 0 2
MBNL2 WILD-TYPE 86 64 45 55 45
'ITGAE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00331 (Fisher's exact test), Q value = 0.031

Table S7503.  Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ITGAE MUTATED 2 12 1 0
ITGAE WILD-TYPE 202 125 46 3

Figure S2819.  Get High-res Image Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITGAE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00882 (Fisher's exact test), Q value = 0.053

Table S7504.  Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ITGAE MUTATED 3 8 2 0 1
ITGAE WILD-TYPE 36 88 42 88 79

Figure S2820.  Get High-res Image Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ITGAE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S7505.  Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ITGAE MUTATED 2 3 3 0 3
ITGAE WILD-TYPE 24 76 70 82 55
'ITGAE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0715 (Fisher's exact test), Q value = 0.18

Table S7506.  Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ITGAE MUTATED 2 5 2 2
ITGAE WILD-TYPE 125 46 69 67
'ITGAE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.68

Table S7507.  Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ITGAE MUTATED 1 3 5 3 2
ITGAE WILD-TYPE 83 82 80 66 45
'ITGAE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S7508.  Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ITGAE MUTATED 5 3 1 5
ITGAE WILD-TYPE 90 71 120 75
'ITGAE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0596 (Fisher's exact test), Q value = 0.16

Table S7509.  Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ITGAE MUTATED 3 4 4 1 3 0
ITGAE WILD-TYPE 49 60 68 103 37 59
'ITGAE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 0.17

Table S7510.  Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ITGAE MUTATED 13 1 1
ITGAE WILD-TYPE 204 74 98
'ITGAE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S7511.  Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ITGAE MUTATED 5 2 5
ITGAE WILD-TYPE 116 106 67
'ITGAE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S7512.  Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ITGAE MUTATED 3 1 2 0 6
ITGAE WILD-TYPE 85 65 43 55 41

Figure S2821.  Get High-res Image Gene #756: 'ITGAE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIF6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S7513.  Gene #757: 'KIF6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIF6 MUTATED 4 7 0 0
KIF6 WILD-TYPE 200 130 47 3
'KIF6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S7514.  Gene #757: 'KIF6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIF6 MUTATED 1 6 0 1 1
KIF6 WILD-TYPE 38 90 44 87 79
'KIF6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 0.92

Table S7515.  Gene #757: 'KIF6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIF6 MUTATED 0 2 2 3 3
KIF6 WILD-TYPE 26 77 71 79 55
'KIF6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.378 (Fisher's exact test), Q value = 0.5

Table S7516.  Gene #757: 'KIF6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIF6 MUTATED 2 3 2 3
KIF6 WILD-TYPE 125 48 69 66
'KIF6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.51

Table S7517.  Gene #757: 'KIF6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIF6 MUTATED 2 2 6 1 1
KIF6 WILD-TYPE 82 83 79 68 46
'KIF6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S7518.  Gene #757: 'KIF6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIF6 MUTATED 1 3 3 5
KIF6 WILD-TYPE 94 71 118 75
'KIF6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.891 (Fisher's exact test), Q value = 0.93

Table S7519.  Gene #757: 'KIF6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIF6 MUTATED 1 2 4 3 1 1
KIF6 WILD-TYPE 51 62 68 101 39 58
'KIF6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.59

Table S7520.  Gene #757: 'KIF6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIF6 MUTATED 6 4 2
KIF6 WILD-TYPE 211 71 97
'KIF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.693 (Fisher's exact test), Q value = 0.77

Table S7521.  Gene #757: 'KIF6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIF6 MUTATED 5 2 2
KIF6 WILD-TYPE 116 106 70
'KIF6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S7522.  Gene #757: 'KIF6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIF6 MUTATED 3 1 1 2 2
KIF6 WILD-TYPE 85 65 44 53 45
'TNFSF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S7523.  Gene #758: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TNFSF13 MUTATED 0 3 0 0
TNFSF13 WILD-TYPE 204 134 47 3
'TNFSF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.76

Table S7524.  Gene #758: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TNFSF13 MUTATED 0 1 1 0 1
TNFSF13 WILD-TYPE 39 95 43 88 79
'TNFSF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.45

Table S7525.  Gene #758: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TNFSF13 MUTATED 0 0 2 1 0
TNFSF13 WILD-TYPE 84 85 83 68 47
'TNFSF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 0.93

Table S7526.  Gene #758: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TNFSF13 MUTATED 1 1 1 0
TNFSF13 WILD-TYPE 94 73 120 80
'TNFSF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.24

Table S7527.  Gene #758: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TNFSF13 MUTATED 1 2 0 0 0 0
TNFSF13 WILD-TYPE 51 62 72 104 40 59
'TNFSF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 0.83

Table S7528.  Gene #758: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TNFSF13 MUTATED 2 1 0
TNFSF13 WILD-TYPE 215 74 99
'TNFSF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S7529.  Gene #758: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TNFSF13 MUTATED 1 0 2
TNFSF13 WILD-TYPE 120 108 70
'TNFSF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S7530.  Gene #758: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TNFSF13 MUTATED 0 0 2 0 1
TNFSF13 WILD-TYPE 88 66 43 55 46

Figure S2822.  Get High-res Image Gene #758: 'TNFSF13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CASKIN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.48

Table S7531.  Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CASKIN2 MUTATED 5 8 2 0
CASKIN2 WILD-TYPE 199 129 45 3
'CASKIN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.68

Table S7532.  Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CASKIN2 MUTATED 0 5 2 5 2
CASKIN2 WILD-TYPE 39 91 42 83 78
'CASKIN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 0.84

Table S7533.  Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CASKIN2 MUTATED 0 4 4 2 2
CASKIN2 WILD-TYPE 26 75 69 80 56
'CASKIN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 0.33

Table S7534.  Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CASKIN2 MUTATED 3 4 4 1
CASKIN2 WILD-TYPE 124 47 67 68
'CASKIN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.2

Table S7535.  Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CASKIN2 MUTATED 3 0 6 3 3
CASKIN2 WILD-TYPE 81 85 79 66 44
'CASKIN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 0.15

Table S7536.  Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CASKIN2 MUTATED 5 1 2 7
CASKIN2 WILD-TYPE 90 73 119 73
'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.362 (Fisher's exact test), Q value = 0.49

Table S7537.  Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CASKIN2 MUTATED 3 4 1 3 3 1
CASKIN2 WILD-TYPE 49 60 71 101 37 58
'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0965 (Fisher's exact test), Q value = 0.21

Table S7538.  Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CASKIN2 MUTATED 11 0 4
CASKIN2 WILD-TYPE 206 75 95
'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0418 (Fisher's exact test), Q value = 0.13

Table S7539.  Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CASKIN2 MUTATED 4 2 7
CASKIN2 WILD-TYPE 117 106 65

Figure S2823.  Get High-res Image Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CASKIN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S7540.  Gene #759: 'CASKIN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CASKIN2 MUTATED 4 0 4 2 3
CASKIN2 WILD-TYPE 84 66 41 53 44
'ALPK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00105 (Fisher's exact test), Q value = 0.016

Table S7541.  Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ALPK1 MUTATED 3 15 1 0
ALPK1 WILD-TYPE 201 122 46 3

Figure S2824.  Get High-res Image Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ALPK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S7542.  Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ALPK1 MUTATED 1 12 5 0 0
ALPK1 WILD-TYPE 38 84 39 88 80

Figure S2825.  Get High-res Image Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ALPK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S7543.  Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ALPK1 MUTATED 0 7 8 1 1
ALPK1 WILD-TYPE 26 72 65 81 57

Figure S2826.  Get High-res Image Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ALPK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0179 (Fisher's exact test), Q value = 0.079

Table S7544.  Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ALPK1 MUTATED 3 7 5 2
ALPK1 WILD-TYPE 124 44 66 67

Figure S2827.  Get High-res Image Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ALPK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S7545.  Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ALPK1 MUTATED 0 4 9 2 3
ALPK1 WILD-TYPE 84 81 76 67 44

Figure S2828.  Get High-res Image Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ALPK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.2

Table S7546.  Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ALPK1 MUTATED 4 5 2 7
ALPK1 WILD-TYPE 91 69 119 73
'ALPK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0347 (Fisher's exact test), Q value = 0.12

Table S7547.  Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ALPK1 MUTATED 5 4 4 2 4 0
ALPK1 WILD-TYPE 47 60 68 102 36 59

Figure S2829.  Get High-res Image Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ALPK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0718 (Fisher's exact test), Q value = 0.18

Table S7548.  Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ALPK1 MUTATED 15 3 1
ALPK1 WILD-TYPE 202 72 98
'ALPK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0608 (Fisher's exact test), Q value = 0.16

Table S7549.  Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ALPK1 MUTATED 7 2 7
ALPK1 WILD-TYPE 114 106 65
'ALPK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.092 (Fisher's exact test), Q value = 0.21

Table S7550.  Gene #760: 'ALPK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ALPK1 MUTATED 6 2 3 0 5
ALPK1 WILD-TYPE 82 64 42 55 42
'SUCLG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00377 (Fisher's exact test), Q value = 0.033

Table S7551.  Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SUCLG2 MUTATED 0 7 0 0
SUCLG2 WILD-TYPE 204 130 47 3

Figure S2830.  Get High-res Image Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SUCLG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S7552.  Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SUCLG2 MUTATED 0 4 0 0 1
SUCLG2 WILD-TYPE 39 92 44 88 79
'SUCLG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.78

Table S7553.  Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SUCLG2 MUTATED 1 1 1 1 2
SUCLG2 WILD-TYPE 25 78 72 81 56
'SUCLG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S7554.  Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SUCLG2 MUTATED 1 3 1 1
SUCLG2 WILD-TYPE 126 48 70 68
'SUCLG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.79

Table S7555.  Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SUCLG2 MUTATED 1 1 2 1 2
SUCLG2 WILD-TYPE 83 84 83 68 45
'SUCLG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 0.66

Table S7556.  Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SUCLG2 MUTATED 2 1 1 3
SUCLG2 WILD-TYPE 93 73 120 77
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.14

Table S7557.  Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SUCLG2 MUTATED 3 2 0 0 1 1
SUCLG2 WILD-TYPE 49 62 72 104 39 58

Figure S2831.  Get High-res Image Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.769 (Fisher's exact test), Q value = 0.83

Table S7558.  Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SUCLG2 MUTATED 4 2 1
SUCLG2 WILD-TYPE 213 73 98
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.2

Table S7559.  Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SUCLG2 MUTATED 2 0 3
SUCLG2 WILD-TYPE 119 108 69
'SUCLG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0683 (Fisher's exact test), Q value = 0.17

Table S7560.  Gene #761: 'SUCLG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SUCLG2 MUTATED 1 0 1 0 3
SUCLG2 WILD-TYPE 87 66 44 55 44
'NOS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S7561.  Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NOS1 MUTATED 7 24 0 0
NOS1 WILD-TYPE 197 113 47 3

Figure S2832.  Get High-res Image Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NOS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00754 (Fisher's exact test), Q value = 0.048

Table S7562.  Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NOS1 MUTATED 3 13 4 1 3
NOS1 WILD-TYPE 36 83 40 87 77

Figure S2833.  Get High-res Image Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NOS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.39

Table S7563.  Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NOS1 MUTATED 2 8 7 2 5
NOS1 WILD-TYPE 24 71 66 80 53
'NOS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S7564.  Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NOS1 MUTATED 4 13 4 3
NOS1 WILD-TYPE 123 38 67 66

Figure S2834.  Get High-res Image Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NOS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S7565.  Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NOS1 MUTATED 2 2 18 4 4
NOS1 WILD-TYPE 82 83 67 65 43

Figure S2835.  Get High-res Image Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NOS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00432 (Fisher's exact test), Q value = 0.035

Table S7566.  Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NOS1 MUTATED 6 3 6 15
NOS1 WILD-TYPE 89 71 115 65

Figure S2836.  Get High-res Image Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NOS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00581 (Fisher's exact test), Q value = 0.042

Table S7567.  Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NOS1 MUTATED 8 10 7 3 1 2
NOS1 WILD-TYPE 44 54 65 101 39 57

Figure S2837.  Get High-res Image Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00257 (Fisher's exact test), Q value = 0.027

Table S7568.  Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NOS1 MUTATED 26 3 2
NOS1 WILD-TYPE 191 72 97

Figure S2838.  Get High-res Image Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.06

Table S7569.  Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NOS1 MUTATED 14 2 4
NOS1 WILD-TYPE 107 106 68

Figure S2839.  Get High-res Image Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NOS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00027 (Fisher's exact test), Q value = 0.0073

Table S7570.  Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NOS1 MUTATED 9 0 3 0 8
NOS1 WILD-TYPE 79 66 42 55 39

Figure S2840.  Get High-res Image Gene #762: 'NOS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00972 (Fisher's exact test), Q value = 0.056

Table S7571.  Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLA MUTATED 0 6 0 0
SLA WILD-TYPE 204 131 47 3

Figure S2841.  Get High-res Image Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.11

Table S7572.  Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLA MUTATED 0 5 1 0 0
SLA WILD-TYPE 39 91 43 88 80

Figure S2842.  Get High-res Image Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7573.  Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLA MUTATED 0 1 1 1 1
SLA WILD-TYPE 26 78 72 81 57
'SLA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0928 (Fisher's exact test), Q value = 0.21

Table S7574.  Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLA MUTATED 0 2 1 1
SLA WILD-TYPE 127 49 70 68
'SLA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00284 (Fisher's exact test), Q value = 0.028

Table S7575.  Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLA MUTATED 0 0 5 0 0
SLA WILD-TYPE 84 85 80 69 47

Figure S2843.  Get High-res Image Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0961 (Fisher's exact test), Q value = 0.21

Table S7576.  Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLA MUTATED 1 1 0 3
SLA WILD-TYPE 94 73 121 77
'SLA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.84

Table S7577.  Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLA MUTATED 1 1 2 1 1 0
SLA WILD-TYPE 51 63 70 103 39 59
'SLA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.36

Table S7578.  Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLA MUTATED 4 2 0
SLA WILD-TYPE 213 73 99
'SLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S7579.  Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLA MUTATED 3 0 3
SLA WILD-TYPE 118 108 69
'SLA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.669 (Fisher's exact test), Q value = 0.75

Table S7580.  Gene #763: 'SLA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLA MUTATED 2 1 1 0 2
SLA WILD-TYPE 86 65 44 55 45
'C9ORF98 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00592 (Fisher's exact test), Q value = 0.043

Table S7581.  Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C9ORF98 MUTATED 1 9 0 0
C9ORF98 WILD-TYPE 203 128 47 3

Figure S2844.  Get High-res Image Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF98 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S7582.  Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C9ORF98 MUTATED 0 6 0 0 1
C9ORF98 WILD-TYPE 39 90 44 88 79

Figure S2845.  Get High-res Image Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C9ORF98 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.022 (Fisher's exact test), Q value = 0.089

Table S7583.  Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C9ORF98 MUTATED 0 3 0 0 4
C9ORF98 WILD-TYPE 26 76 73 82 54

Figure S2846.  Get High-res Image Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'C9ORF98 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.073

Table S7584.  Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C9ORF98 MUTATED 1 4 2 0
C9ORF98 WILD-TYPE 126 47 69 69

Figure S2847.  Get High-res Image Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C9ORF98 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0256 (Fisher's exact test), Q value = 0.098

Table S7585.  Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C9ORF98 MUTATED 1 0 5 4 0
C9ORF98 WILD-TYPE 83 85 80 65 47

Figure S2848.  Get High-res Image Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C9ORF98 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S7586.  Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C9ORF98 MUTATED 5 0 2 3
C9ORF98 WILD-TYPE 90 74 119 77
'C9ORF98 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.079

Table S7587.  Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C9ORF98 MUTATED 4 4 0 1 0 1
C9ORF98 WILD-TYPE 48 60 72 103 40 58

Figure S2849.  Get High-res Image Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C9ORF98 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 0.82

Table S7588.  Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C9ORF98 MUTATED 7 1 2
C9ORF98 WILD-TYPE 210 74 97
'C9ORF98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S7589.  Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C9ORF98 MUTATED 4 1 1
C9ORF98 WILD-TYPE 117 107 71
'C9ORF98 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S7590.  Gene #764: 'C9ORF98 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C9ORF98 MUTATED 1 0 1 1 3
C9ORF98 WILD-TYPE 87 66 44 54 44
'TOPBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0483 (Fisher's exact test), Q value = 0.14

Table S7591.  Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TOPBP1 MUTATED 4 11 1 0
TOPBP1 WILD-TYPE 200 126 46 3

Figure S2850.  Get High-res Image Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TOPBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S7592.  Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TOPBP1 MUTATED 0 7 1 2 1
TOPBP1 WILD-TYPE 39 89 43 86 79
'TOPBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0924 (Fisher's exact test), Q value = 0.21

Table S7593.  Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TOPBP1 MUTATED 0 9 3 2 2
TOPBP1 WILD-TYPE 26 70 70 80 56
'TOPBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.081

Table S7594.  Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TOPBP1 MUTATED 4 7 4 1
TOPBP1 WILD-TYPE 123 44 67 68

Figure S2851.  Get High-res Image Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TOPBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0685 (Fisher's exact test), Q value = 0.17

Table S7595.  Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TOPBP1 MUTATED 0 4 5 2 4
TOPBP1 WILD-TYPE 84 81 80 67 43
'TOPBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 0.52

Table S7596.  Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TOPBP1 MUTATED 6 1 4 4
TOPBP1 WILD-TYPE 89 73 117 76
'TOPBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.012 (Fisher's exact test), Q value = 0.063

Table S7597.  Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TOPBP1 MUTATED 4 7 3 1 0 1
TOPBP1 WILD-TYPE 48 57 69 103 40 58

Figure S2852.  Get High-res Image Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TOPBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 0.094

Table S7598.  Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TOPBP1 MUTATED 14 0 2
TOPBP1 WILD-TYPE 203 75 97

Figure S2853.  Get High-res Image Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TOPBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.086

Table S7599.  Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TOPBP1 MUTATED 7 0 3
TOPBP1 WILD-TYPE 114 108 69

Figure S2854.  Get High-res Image Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TOPBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00674 (Fisher's exact test), Q value = 0.045

Table S7600.  Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TOPBP1 MUTATED 1 0 3 1 5
TOPBP1 WILD-TYPE 87 66 42 54 42

Figure S2855.  Get High-res Image Gene #765: 'TOPBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KCNH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.068 (Fisher's exact test), Q value = 0.17

Table S7601.  Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCNH2 MUTATED 3 8 3 0
KCNH2 WILD-TYPE 201 129 44 3
'KCNH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.51

Table S7602.  Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCNH2 MUTATED 2 4 2 1 1
KCNH2 WILD-TYPE 37 92 42 87 79
'KCNH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.18

Table S7603.  Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCNH2 MUTATED 1 6 3 0 1
KCNH2 WILD-TYPE 25 73 70 82 57
'KCNH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00805 (Fisher's exact test), Q value = 0.05

Table S7604.  Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCNH2 MUTATED 3 6 2 0
KCNH2 WILD-TYPE 124 45 69 69

Figure S2856.  Get High-res Image Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S7605.  Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCNH2 MUTATED 1 1 6 4 1
KCNH2 WILD-TYPE 83 84 79 65 46
'KCNH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S7606.  Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCNH2 MUTATED 5 1 2 5
KCNH2 WILD-TYPE 90 73 119 75
'KCNH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.2

Table S7607.  Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCNH2 MUTATED 3 6 2 1 1 1
KCNH2 WILD-TYPE 49 58 70 103 39 58
'KCNH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0958 (Fisher's exact test), Q value = 0.21

Table S7608.  Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCNH2 MUTATED 12 1 1
KCNH2 WILD-TYPE 205 74 98
'KCNH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S7609.  Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCNH2 MUTATED 7 1 2
KCNH2 WILD-TYPE 114 107 70
'KCNH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0268 (Fisher's exact test), Q value = 0.1

Table S7610.  Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCNH2 MUTATED 2 0 2 1 5
KCNH2 WILD-TYPE 86 66 43 54 42

Figure S2857.  Get High-res Image Gene #766: 'KCNH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAHD2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00219 (Fisher's exact test), Q value = 0.024

Table S7611.  Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAHD2A MUTATED 0 8 0 0
FAHD2A WILD-TYPE 204 129 47 3

Figure S2858.  Get High-res Image Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAHD2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0828 (Fisher's exact test), Q value = 0.19

Table S7612.  Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAHD2A MUTATED 0 4 1 0 0
FAHD2A WILD-TYPE 39 92 43 88 80
'FAHD2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S7613.  Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAHD2A MUTATED 1 1 2 0 2
FAHD2A WILD-TYPE 25 78 71 82 56
'FAHD2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.07

Table S7614.  Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAHD2A MUTATED 1 4 0 1
FAHD2A WILD-TYPE 126 47 71 68

Figure S2859.  Get High-res Image Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAHD2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.84

Table S7615.  Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAHD2A MUTATED 1 3 2 1 0
FAHD2A WILD-TYPE 83 82 83 68 47
'FAHD2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S7616.  Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAHD2A MUTATED 2 2 0 3
FAHD2A WILD-TYPE 93 72 121 77
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S7617.  Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAHD2A MUTATED 3 3 0 1 0 1
FAHD2A WILD-TYPE 49 61 72 103 40 58
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S7618.  Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAHD2A MUTATED 6 1 1
FAHD2A WILD-TYPE 211 74 98
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.89

Table S7619.  Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAHD2A MUTATED 3 1 1
FAHD2A WILD-TYPE 118 107 71
'FAHD2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S7620.  Gene #767: 'FAHD2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAHD2A MUTATED 1 1 0 0 3
FAHD2A WILD-TYPE 87 65 45 55 44
'PTPN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 0.018

Table S7621.  Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTPN3 MUTATED 2 12 0 0
PTPN3 WILD-TYPE 202 125 47 3

Figure S2860.  Get High-res Image Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.07

Table S7622.  Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTPN3 MUTATED 0 8 1 0 2
PTPN3 WILD-TYPE 39 88 43 88 78

Figure S2861.  Get High-res Image Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.77

Table S7623.  Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTPN3 MUTATED 0 5 3 2 2
PTPN3 WILD-TYPE 26 74 70 80 56
'PTPN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S7624.  Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTPN3 MUTATED 2 4 4 2
PTPN3 WILD-TYPE 125 47 67 67
'PTPN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 0.2

Table S7625.  Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTPN3 MUTATED 0 6 5 3 1
PTPN3 WILD-TYPE 84 79 80 66 46
'PTPN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00898 (Fisher's exact test), Q value = 0.053

Table S7626.  Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTPN3 MUTATED 7 4 0 4
PTPN3 WILD-TYPE 88 70 121 76

Figure S2862.  Get High-res Image Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S7627.  Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTPN3 MUTATED 2 4 3 3 3 0
PTPN3 WILD-TYPE 50 60 69 101 37 59
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.57

Table S7628.  Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTPN3 MUTATED 11 2 2
PTPN3 WILD-TYPE 206 73 97
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7629.  Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTPN3 MUTATED 5 4 2
PTPN3 WILD-TYPE 116 104 70
'PTPN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S7630.  Gene #768: 'PTPN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTPN3 MUTATED 6 1 1 0 3
PTPN3 WILD-TYPE 82 65 44 55 44
'E2F5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.57

Table S7631.  Gene #769: 'E2F5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
E2F5 MUTATED 1 2 1 0
E2F5 WILD-TYPE 203 135 46 3
'E2F5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.43

Table S7632.  Gene #769: 'E2F5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
E2F5 MUTATED 1 2 0 0 0
E2F5 WILD-TYPE 38 94 44 88 80
'E2F5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 0.89

Table S7633.  Gene #769: 'E2F5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
E2F5 MUTATED 0 1 2 1 0
E2F5 WILD-TYPE 26 78 71 81 58
'E2F5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0929 (Fisher's exact test), Q value = 0.21

Table S7634.  Gene #769: 'E2F5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
E2F5 MUTATED 0 2 1 1
E2F5 WILD-TYPE 127 49 70 68
'E2F5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 0.97

Table S7635.  Gene #769: 'E2F5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
E2F5 MUTATED 1 1 1 0 1
E2F5 WILD-TYPE 83 84 84 69 46
'E2F5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7636.  Gene #769: 'E2F5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
E2F5 MUTATED 1 1 1 1
E2F5 WILD-TYPE 94 73 120 79
'E2F5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 0.86

Table S7637.  Gene #769: 'E2F5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
E2F5 MUTATED 0 1 1 1 1 0
E2F5 WILD-TYPE 52 63 71 103 39 59
'E2F5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S7638.  Gene #769: 'E2F5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
E2F5 MUTATED 2 2 0
E2F5 WILD-TYPE 215 73 99
'PABPC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0114 (Fisher's exact test), Q value = 0.061

Table S7639.  Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PABPC4 MUTATED 1 8 0 0
PABPC4 WILD-TYPE 203 129 47 3

Figure S2863.  Get High-res Image Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PABPC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S7640.  Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PABPC4 MUTATED 0 4 2 0 1
PABPC4 WILD-TYPE 39 92 42 88 79
'PABPC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.16

Table S7641.  Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PABPC4 MUTATED 2 4 1 0 1
PABPC4 WILD-TYPE 24 75 72 82 57
'PABPC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.59

Table S7642.  Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PABPC4 MUTATED 3 3 1 1
PABPC4 WILD-TYPE 124 48 70 68
'PABPC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S7643.  Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PABPC4 MUTATED 1 1 5 0 1
PABPC4 WILD-TYPE 83 84 80 69 46
'PABPC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.865 (Fisher's exact test), Q value = 0.91

Table S7644.  Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PABPC4 MUTATED 3 1 2 2
PABPC4 WILD-TYPE 92 73 119 78
'PABPC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0829 (Fisher's exact test), Q value = 0.19

Table S7645.  Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PABPC4 MUTATED 3 3 2 0 0 1
PABPC4 WILD-TYPE 49 61 70 104 40 58
'PABPC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S7646.  Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PABPC4 MUTATED 8 0 1
PABPC4 WILD-TYPE 209 75 98
'PABPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S7647.  Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PABPC4 MUTATED 3 0 3
PABPC4 WILD-TYPE 118 108 69
'PABPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S7648.  Gene #770: 'PABPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PABPC4 MUTATED 2 0 1 0 3
PABPC4 WILD-TYPE 86 66 44 55 44
'ERV3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7649.  Gene #771: 'ERV3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ERV3 MUTATED 2 2 0 0
ERV3 WILD-TYPE 202 135 47 3
'ERV3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.57

Table S7650.  Gene #771: 'ERV3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ERV3 MUTATED 0 3 0 1 0
ERV3 WILD-TYPE 39 93 44 87 80
'ERV3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.805 (Fisher's exact test), Q value = 0.86

Table S7651.  Gene #771: 'ERV3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ERV3 MUTATED 0 1 0 2 1
ERV3 WILD-TYPE 26 78 73 80 57
'ERV3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.44

Table S7652.  Gene #771: 'ERV3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ERV3 MUTATED 1 1 0 2
ERV3 WILD-TYPE 126 50 71 67
'ERV3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 0.83

Table S7653.  Gene #771: 'ERV3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ERV3 MUTATED 2 1 2 0 0
ERV3 WILD-TYPE 82 84 83 69 47
'ERV3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 0.57

Table S7654.  Gene #771: 'ERV3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ERV3 MUTATED 0 2 2 1
ERV3 WILD-TYPE 95 72 119 79
'ERV3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.48

Table S7655.  Gene #771: 'ERV3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ERV3 MUTATED 1 0 0 1 1 2
ERV3 WILD-TYPE 51 64 72 103 39 57
'ERV3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S7656.  Gene #771: 'ERV3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ERV3 MUTATED 1 2 2
ERV3 WILD-TYPE 216 73 97
'ERV3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S7657.  Gene #771: 'ERV3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ERV3 MUTATED 2 0 2
ERV3 WILD-TYPE 119 108 70
'ERV3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.57

Table S7658.  Gene #771: 'ERV3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ERV3 MUTATED 1 0 0 2 1
ERV3 WILD-TYPE 87 66 45 53 46
'SLC39A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.16

Table S7659.  Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC39A8 MUTATED 1 6 0 0
SLC39A8 WILD-TYPE 203 131 47 3
'SLC39A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.2

Table S7660.  Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC39A8 MUTATED 0 5 0 1 0
SLC39A8 WILD-TYPE 39 91 44 87 80
'SLC39A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.34

Table S7661.  Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC39A8 MUTATED 0 2 4 0 1
SLC39A8 WILD-TYPE 26 77 69 82 57
'SLC39A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0444 (Fisher's exact test), Q value = 0.13

Table S7662.  Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC39A8 MUTATED 2 4 1 0
SLC39A8 WILD-TYPE 125 47 70 69

Figure S2864.  Get High-res Image Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC39A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 0.76

Table S7663.  Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC39A8 MUTATED 1 0 2 1 1
SLC39A8 WILD-TYPE 83 85 83 68 46
'SLC39A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 0.64

Table S7664.  Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC39A8 MUTATED 2 0 1 2
SLC39A8 WILD-TYPE 93 74 120 78
'SLC39A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0662 (Fisher's exact test), Q value = 0.17

Table S7665.  Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC39A8 MUTATED 2 3 0 0 1 1
SLC39A8 WILD-TYPE 50 61 72 104 39 58
'SLC39A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S7666.  Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC39A8 MUTATED 6 0 1
SLC39A8 WILD-TYPE 211 75 98
'SLC39A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S7667.  Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC39A8 MUTATED 4 0 2
SLC39A8 WILD-TYPE 117 108 70
'SLC39A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0221 (Fisher's exact test), Q value = 0.089

Table S7668.  Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC39A8 MUTATED 0 0 2 1 3
SLC39A8 WILD-TYPE 88 66 43 54 44

Figure S2865.  Get High-res Image Gene #772: 'SLC39A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RIMKLB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00239 (Fisher's exact test), Q value = 0.025

Table S7669.  Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RIMKLB MUTATED 1 10 0 0
RIMKLB WILD-TYPE 203 127 47 3

Figure S2866.  Get High-res Image Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RIMKLB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00435 (Fisher's exact test), Q value = 0.035

Table S7670.  Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RIMKLB MUTATED 0 7 1 0 0
RIMKLB WILD-TYPE 39 89 43 88 80

Figure S2867.  Get High-res Image Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RIMKLB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S7671.  Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RIMKLB MUTATED 0 5 4 1 0
RIMKLB WILD-TYPE 26 74 69 81 58
'RIMKLB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.011

Table S7672.  Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RIMKLB MUTATED 0 6 2 2
RIMKLB WILD-TYPE 127 45 69 67

Figure S2868.  Get High-res Image Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RIMKLB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.019

Table S7673.  Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RIMKLB MUTATED 0 1 8 1 0
RIMKLB WILD-TYPE 84 84 77 68 47

Figure S2869.  Get High-res Image Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RIMKLB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.13

Table S7674.  Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RIMKLB MUTATED 3 4 0 3
RIMKLB WILD-TYPE 92 70 121 77

Figure S2870.  Get High-res Image Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RIMKLB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00532 (Fisher's exact test), Q value = 0.04

Table S7675.  Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RIMKLB MUTATED 3 5 1 0 2 0
RIMKLB WILD-TYPE 49 59 71 104 38 59

Figure S2871.  Get High-res Image Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RIMKLB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S7676.  Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RIMKLB MUTATED 8 1 2
RIMKLB WILD-TYPE 209 74 97
'RIMKLB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S7677.  Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RIMKLB MUTATED 2 0 4
RIMKLB WILD-TYPE 119 108 68

Figure S2872.  Get High-res Image Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RIMKLB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S7678.  Gene #773: 'RIMKLB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RIMKLB MUTATED 2 0 2 0 2
RIMKLB WILD-TYPE 86 66 43 55 45
'UGT1A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S7679.  Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UGT1A4 MUTATED 3 6 1 0
UGT1A4 WILD-TYPE 201 131 46 3
'UGT1A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0865 (Fisher's exact test), Q value = 0.2

Table S7680.  Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UGT1A4 MUTATED 1 6 0 2 0
UGT1A4 WILD-TYPE 38 90 44 86 80
'UGT1A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.68

Table S7681.  Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UGT1A4 MUTATED 1 4 3 1 1
UGT1A4 WILD-TYPE 25 75 70 81 57
'UGT1A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0223 (Fisher's exact test), Q value = 0.09

Table S7682.  Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UGT1A4 MUTATED 1 5 2 2
UGT1A4 WILD-TYPE 126 46 69 67

Figure S2873.  Get High-res Image Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UGT1A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S7683.  Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UGT1A4 MUTATED 2 1 5 0 1
UGT1A4 WILD-TYPE 82 84 80 69 46
'UGT1A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.86

Table S7684.  Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UGT1A4 MUTATED 2 2 2 3
UGT1A4 WILD-TYPE 93 72 119 77
'UGT1A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S7685.  Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UGT1A4 MUTATED 4 2 1 1 1 1
UGT1A4 WILD-TYPE 48 62 71 103 39 58
'UGT1A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S7686.  Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UGT1A4 MUTATED 7 0 3
UGT1A4 WILD-TYPE 210 75 96
'UGT1A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S7687.  Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
UGT1A4 MUTATED 6 1 1
UGT1A4 WILD-TYPE 115 107 71
'UGT1A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S7688.  Gene #774: 'UGT1A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
UGT1A4 MUTATED 2 0 1 2 3
UGT1A4 WILD-TYPE 86 66 44 53 44
'PLA2G15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0057 (Fisher's exact test), Q value = 0.042

Table S7689.  Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLA2G15 MUTATED 1 9 0 0
PLA2G15 WILD-TYPE 203 128 47 3

Figure S2874.  Get High-res Image Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLA2G15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S7690.  Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLA2G15 MUTATED 0 5 1 1 0
PLA2G15 WILD-TYPE 39 91 43 87 80
'PLA2G15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S7691.  Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLA2G15 MUTATED 1 5 2 0 1
PLA2G15 WILD-TYPE 25 74 71 82 57
'PLA2G15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00209 (Fisher's exact test), Q value = 0.024

Table S7692.  Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLA2G15 MUTATED 2 6 1 0
PLA2G15 WILD-TYPE 125 45 70 69

Figure S2875.  Get High-res Image Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S7693.  Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLA2G15 MUTATED 1 1 3 2 1
PLA2G15 WILD-TYPE 83 84 82 67 46
'PLA2G15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.439 (Fisher's exact test), Q value = 0.55

Table S7694.  Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLA2G15 MUTATED 3 1 1 3
PLA2G15 WILD-TYPE 92 73 120 77
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S7695.  Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLA2G15 MUTATED 2 4 2 1 0 1
PLA2G15 WILD-TYPE 50 60 70 103 40 58
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.5

Table S7696.  Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLA2G15 MUTATED 8 1 1
PLA2G15 WILD-TYPE 209 74 98
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.47

Table S7697.  Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLA2G15 MUTATED 2 1 3
PLA2G15 WILD-TYPE 119 107 69
'PLA2G15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S7698.  Gene #775: 'PLA2G15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLA2G15 MUTATED 1 1 2 0 2
PLA2G15 WILD-TYPE 87 65 43 55 45
'MNS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S7699.  Gene #776: 'MNS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MNS1 MUTATED 2 3 3 0
MNS1 WILD-TYPE 202 134 44 3
'MNS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.15

Table S7700.  Gene #776: 'MNS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MNS1 MUTATED 2 2 3 0 1
MNS1 WILD-TYPE 37 94 41 88 79
'MNS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 0.92

Table S7701.  Gene #776: 'MNS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MNS1 MUTATED 0 2 2 1 2
MNS1 WILD-TYPE 26 77 71 81 56
'MNS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.54

Table S7702.  Gene #776: 'MNS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MNS1 MUTATED 3 1 3 0
MNS1 WILD-TYPE 124 50 68 69
'MNS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S7703.  Gene #776: 'MNS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MNS1 MUTATED 1 2 5 0 0
MNS1 WILD-TYPE 83 83 80 69 47
'MNS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 0.48

Table S7704.  Gene #776: 'MNS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MNS1 MUTATED 1 1 2 4
MNS1 WILD-TYPE 94 73 119 76
'MNS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.2

Table S7705.  Gene #776: 'MNS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MNS1 MUTATED 3 3 0 2 0 0
MNS1 WILD-TYPE 49 61 72 102 40 59
'MNS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S7706.  Gene #776: 'MNS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MNS1 MUTATED 7 1 0
MNS1 WILD-TYPE 210 74 99
'MNS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7707.  Gene #776: 'MNS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MNS1 MUTATED 3 2 2
MNS1 WILD-TYPE 118 106 70
'MNS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S7708.  Gene #776: 'MNS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MNS1 MUTATED 4 0 2 0 1
MNS1 WILD-TYPE 84 66 43 55 46
'ZNF800 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00487 (Fisher's exact test), Q value = 0.038

Table S7709.  Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF800 MUTATED 1 10 1 0
ZNF800 WILD-TYPE 203 127 46 3

Figure S2876.  Get High-res Image Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF800 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.67

Table S7710.  Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF800 MUTATED 0 4 1 1 1
ZNF800 WILD-TYPE 39 92 43 87 79
'ZNF800 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S7711.  Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF800 MUTATED 1 4 2 1 2
ZNF800 WILD-TYPE 25 75 71 81 56
'ZNF800 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 0.58

Table S7712.  Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF800 MUTATED 3 3 3 1
ZNF800 WILD-TYPE 124 48 68 68
'ZNF800 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.64

Table S7713.  Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF800 MUTATED 1 5 2 2 1
ZNF800 WILD-TYPE 83 80 83 67 46
'ZNF800 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.75

Table S7714.  Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF800 MUTATED 4 2 2 3
ZNF800 WILD-TYPE 91 72 119 77
'ZNF800 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00342 (Fisher's exact test), Q value = 0.032

Table S7715.  Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF800 MUTATED 2 7 1 0 1 1
ZNF800 WILD-TYPE 50 57 71 104 39 58

Figure S2877.  Get High-res Image Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF800 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.63

Table S7716.  Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF800 MUTATED 9 1 2
ZNF800 WILD-TYPE 208 74 97
'ZNF800 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.664 (Fisher's exact test), Q value = 0.74

Table S7717.  Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF800 MUTATED 3 1 2
ZNF800 WILD-TYPE 118 107 70
'ZNF800 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.267 (Fisher's exact test), Q value = 0.4

Table S7718.  Gene #777: 'ZNF800 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF800 MUTATED 1 0 2 1 2
ZNF800 WILD-TYPE 87 66 43 54 45
'PHACTR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0795 (Fisher's exact test), Q value = 0.19

Table S7719.  Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PHACTR2 MUTATED 4 10 1 0
PHACTR2 WILD-TYPE 200 127 46 3
'PHACTR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00082 (Fisher's exact test), Q value = 0.014

Table S7720.  Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PHACTR2 MUTATED 1 11 0 2 0
PHACTR2 WILD-TYPE 38 85 44 86 80

Figure S2878.  Get High-res Image Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PHACTR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 0.75

Table S7721.  Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PHACTR2 MUTATED 2 3 4 2 2
PHACTR2 WILD-TYPE 24 76 69 80 56
'PHACTR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.026 (Fisher's exact test), Q value = 0.099

Table S7722.  Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PHACTR2 MUTATED 2 6 3 2
PHACTR2 WILD-TYPE 125 45 68 67

Figure S2879.  Get High-res Image Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.071

Table S7723.  Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PHACTR2 MUTATED 3 2 9 0 1
PHACTR2 WILD-TYPE 81 83 76 69 46

Figure S2880.  Get High-res Image Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PHACTR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S7724.  Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PHACTR2 MUTATED 3 3 2 7
PHACTR2 WILD-TYPE 92 71 119 73
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 0.89

Table S7725.  Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PHACTR2 MUTATED 3 1 4 4 1 2
PHACTR2 WILD-TYPE 49 63 68 100 39 57
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 0.97

Table S7726.  Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PHACTR2 MUTATED 9 3 3
PHACTR2 WILD-TYPE 208 72 96
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7727.  Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PHACTR2 MUTATED 5 4 2
PHACTR2 WILD-TYPE 116 104 70
'PHACTR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.91

Table S7728.  Gene #778: 'PHACTR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PHACTR2 MUTATED 3 2 1 2 3
PHACTR2 WILD-TYPE 85 64 44 53 44
'PLK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0787 (Fisher's exact test), Q value = 0.19

Table S7729.  Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLK2 MUTATED 1 5 2 0
PLK2 WILD-TYPE 203 132 45 3
'PLK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S7730.  Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLK2 MUTATED 2 5 0 0 0
PLK2 WILD-TYPE 37 91 44 88 80

Figure S2881.  Get High-res Image Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PLK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.15

Table S7731.  Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLK2 MUTATED 0 3 0 0 3
PLK2 WILD-TYPE 26 76 73 82 55
'PLK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00636 (Fisher's exact test), Q value = 0.044

Table S7732.  Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLK2 MUTATED 0 3 3 0
PLK2 WILD-TYPE 127 48 68 69

Figure S2882.  Get High-res Image Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PLK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 0.14

Table S7733.  Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLK2 MUTATED 0 2 5 0 1
PLK2 WILD-TYPE 84 83 80 69 46

Figure S2883.  Get High-res Image Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PLK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00239 (Fisher's exact test), Q value = 0.025

Table S7734.  Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLK2 MUTATED 1 1 0 6
PLK2 WILD-TYPE 94 73 121 74

Figure S2884.  Get High-res Image Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PLK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0214 (Fisher's exact test), Q value = 0.088

Table S7735.  Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLK2 MUTATED 4 1 2 0 1 0
PLK2 WILD-TYPE 48 63 70 104 39 59

Figure S2885.  Get High-res Image Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S7736.  Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLK2 MUTATED 7 0 1
PLK2 WILD-TYPE 210 75 98
'PLK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.68

Table S7737.  Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLK2 MUTATED 4 1 1
PLK2 WILD-TYPE 117 107 71
'PLK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0587 (Fisher's exact test), Q value = 0.16

Table S7738.  Gene #779: 'PLK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLK2 MUTATED 3 0 0 0 3
PLK2 WILD-TYPE 85 66 45 55 44
'SERPINB7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0429 (Fisher's exact test), Q value = 0.13

Table S7739.  Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SERPINB7 MUTATED 3 1 1 1
SERPINB7 WILD-TYPE 201 136 46 2

Figure S2886.  Get High-res Image Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SERPINB7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S7740.  Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SERPINB7 MUTATED 1 3 0 1 0
SERPINB7 WILD-TYPE 38 93 44 87 80
'SERPINB7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.528 (Fisher's exact test), Q value = 0.63

Table S7741.  Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SERPINB7 MUTATED 0 1 1 1 3
SERPINB7 WILD-TYPE 26 78 72 81 55
'SERPINB7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.401 (Fisher's exact test), Q value = 0.52

Table S7742.  Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SERPINB7 MUTATED 1 2 1 2
SERPINB7 WILD-TYPE 126 49 70 67
'SERPINB7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S7743.  Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SERPINB7 MUTATED 1 0 2 1 1
SERPINB7 WILD-TYPE 83 85 83 68 46
'SERPINB7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.65

Table S7744.  Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SERPINB7 MUTATED 2 0 1 2
SERPINB7 WILD-TYPE 93 74 120 78
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.723 (Fisher's exact test), Q value = 0.79

Table S7745.  Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SERPINB7 MUTATED 0 2 2 1 0 1
SERPINB7 WILD-TYPE 52 62 70 103 40 58
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S7746.  Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SERPINB7 MUTATED 4 1 1
SERPINB7 WILD-TYPE 213 74 98
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.8

Table S7747.  Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SERPINB7 MUTATED 2 1 2
SERPINB7 WILD-TYPE 119 107 70
'SERPINB7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.44

Table S7748.  Gene #780: 'SERPINB7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SERPINB7 MUTATED 2 0 1 0 2
SERPINB7 WILD-TYPE 86 66 44 55 45
'ZNF295 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S7749.  Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF295 MUTATED 1 16 1 0
ZNF295 WILD-TYPE 203 121 46 3

Figure S2887.  Get High-res Image Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF295 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00175 (Fisher's exact test), Q value = 0.022

Table S7750.  Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF295 MUTATED 0 9 3 1 0
ZNF295 WILD-TYPE 39 87 41 87 80

Figure S2888.  Get High-res Image Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF295 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S7751.  Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF295 MUTATED 2 6 3 1 5
ZNF295 WILD-TYPE 24 73 70 81 53
'ZNF295 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0492 (Fisher's exact test), Q value = 0.14

Table S7752.  Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF295 MUTATED 4 7 4 2
ZNF295 WILD-TYPE 123 44 67 67

Figure S2889.  Get High-res Image Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF295 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.57

Table S7753.  Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF295 MUTATED 1 5 5 2 2
ZNF295 WILD-TYPE 83 80 80 67 45
'ZNF295 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S7754.  Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF295 MUTATED 5 5 0 5
ZNF295 WILD-TYPE 90 69 121 75

Figure S2890.  Get High-res Image Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF295 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.095

Table S7755.  Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF295 MUTATED 4 8 1 3 1 1
ZNF295 WILD-TYPE 48 56 71 101 39 58

Figure S2891.  Get High-res Image Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF295 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.48

Table S7756.  Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF295 MUTATED 13 3 2
ZNF295 WILD-TYPE 204 72 97
'ZNF295 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.069

Table S7757.  Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF295 MUTATED 5 1 7
ZNF295 WILD-TYPE 116 107 65

Figure S2892.  Get High-res Image Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZNF295 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0948 (Fisher's exact test), Q value = 0.21

Table S7758.  Gene #781: 'ZNF295 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF295 MUTATED 3 2 4 0 4
ZNF295 WILD-TYPE 85 64 41 55 43
'RINT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.5

Table S7759.  Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RINT1 MUTATED 2 4 1 0
RINT1 WILD-TYPE 202 133 46 3
'RINT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S7760.  Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RINT1 MUTATED 1 4 1 0 1
RINT1 WILD-TYPE 38 92 43 88 79
'RINT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.046 (Fisher's exact test), Q value = 0.14

Table S7761.  Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RINT1 MUTATED 1 0 2 0 3
RINT1 WILD-TYPE 25 79 71 82 55

Figure S2893.  Get High-res Image Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RINT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0803 (Fisher's exact test), Q value = 0.19

Table S7762.  Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RINT1 MUTATED 3 3 0 0
RINT1 WILD-TYPE 124 48 71 69
'RINT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.36

Table S7763.  Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RINT1 MUTATED 0 1 4 1 1
RINT1 WILD-TYPE 84 84 81 68 46
'RINT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.085

Table S7764.  Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RINT1 MUTATED 1 0 1 5
RINT1 WILD-TYPE 94 74 120 75

Figure S2894.  Get High-res Image Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RINT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 0.092

Table S7765.  Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RINT1 MUTATED 3 3 1 0 0 0
RINT1 WILD-TYPE 49 61 71 104 40 59

Figure S2895.  Get High-res Image Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RINT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 0.18

Table S7766.  Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RINT1 MUTATED 7 0 0
RINT1 WILD-TYPE 210 75 99
'RINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0236 (Fisher's exact test), Q value = 0.093

Table S7767.  Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RINT1 MUTATED 2 0 4
RINT1 WILD-TYPE 119 108 68

Figure S2896.  Get High-res Image Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RINT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S7768.  Gene #782: 'RINT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RINT1 MUTATED 2 0 2 0 2
RINT1 WILD-TYPE 86 66 43 55 45
'PDS5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00098 (Fisher's exact test), Q value = 0.015

Table S7769.  Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PDS5B MUTATED 3 15 1 0
PDS5B WILD-TYPE 201 122 46 3

Figure S2897.  Get High-res Image Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PDS5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.024

Table S7770.  Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PDS5B MUTATED 1 11 1 0 2
PDS5B WILD-TYPE 38 85 43 88 78

Figure S2898.  Get High-res Image Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PDS5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S7771.  Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PDS5B MUTATED 1 5 5 2 3
PDS5B WILD-TYPE 25 74 68 80 55
'PDS5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S7772.  Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PDS5B MUTATED 2 10 2 2
PDS5B WILD-TYPE 125 41 69 67

Figure S2899.  Get High-res Image Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PDS5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00889 (Fisher's exact test), Q value = 0.053

Table S7773.  Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PDS5B MUTATED 1 3 10 3 0
PDS5B WILD-TYPE 83 82 75 66 47

Figure S2900.  Get High-res Image Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PDS5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.075

Table S7774.  Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PDS5B MUTATED 4 4 1 8
PDS5B WILD-TYPE 91 70 120 72

Figure S2901.  Get High-res Image Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PDS5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0905 (Fisher's exact test), Q value = 0.2

Table S7775.  Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PDS5B MUTATED 6 4 5 2 1 1
PDS5B WILD-TYPE 46 60 67 102 39 58
'PDS5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0703 (Fisher's exact test), Q value = 0.18

Table S7776.  Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PDS5B MUTATED 15 3 1
PDS5B WILD-TYPE 202 72 98
'PDS5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0775 (Fisher's exact test), Q value = 0.19

Table S7777.  Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PDS5B MUTATED 6 1 5
PDS5B WILD-TYPE 115 107 67
'PDS5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.017 (Fisher's exact test), Q value = 0.076

Table S7778.  Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PDS5B MUTATED 3 1 2 0 6
PDS5B WILD-TYPE 85 65 43 55 41

Figure S2902.  Get High-res Image Gene #783: 'PDS5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'YBX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S7779.  Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
YBX2 MUTATED 1 4 1 0
YBX2 WILD-TYPE 203 133 46 3
'YBX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 0.17

Table S7780.  Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
YBX2 MUTATED 1 4 0 0 0
YBX2 WILD-TYPE 38 92 44 88 80
'YBX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S7781.  Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
YBX2 MUTATED 0 1 4 0 1
YBX2 WILD-TYPE 26 78 69 82 57
'YBX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.483 (Fisher's exact test), Q value = 0.59

Table S7782.  Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
YBX2 MUTATED 3 2 1 0
YBX2 WILD-TYPE 124 49 70 69
'YBX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.1

Table S7783.  Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
YBX2 MUTATED 0 0 2 1 3
YBX2 WILD-TYPE 84 85 83 68 44

Figure S2903.  Get High-res Image Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'YBX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0385 (Fisher's exact test), Q value = 0.12

Table S7784.  Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
YBX2 MUTATED 3 0 0 3
YBX2 WILD-TYPE 92 74 121 77

Figure S2904.  Get High-res Image Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'YBX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S7785.  Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
YBX2 MUTATED 2 2 2 0 0 0
YBX2 WILD-TYPE 50 62 70 104 40 59
'YBX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S7786.  Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
YBX2 MUTATED 6 0 0
YBX2 WILD-TYPE 211 75 99
'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S7787.  Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
YBX2 MUTATED 3 0 2
YBX2 WILD-TYPE 118 108 70
'YBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0699 (Fisher's exact test), Q value = 0.18

Table S7788.  Gene #784: 'YBX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
YBX2 MUTATED 1 0 1 0 3
YBX2 WILD-TYPE 87 66 44 55 44
'CNOT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00654 (Fisher's exact test), Q value = 0.045

Table S7789.  Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CNOT6 MUTATED 0 6 2 0
CNOT6 WILD-TYPE 204 131 45 3

Figure S2905.  Get High-res Image Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CNOT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0846 (Fisher's exact test), Q value = 0.2

Table S7790.  Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CNOT6 MUTATED 2 1 2 0 1
CNOT6 WILD-TYPE 37 95 42 88 79
'CNOT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S7791.  Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CNOT6 MUTATED 1 3 3 0 1
CNOT6 WILD-TYPE 25 76 70 82 57
'CNOT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0626 (Fisher's exact test), Q value = 0.16

Table S7792.  Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CNOT6 MUTATED 3 4 1 0
CNOT6 WILD-TYPE 124 47 70 69
'CNOT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.35

Table S7793.  Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CNOT6 MUTATED 0 1 4 1 1
CNOT6 WILD-TYPE 84 84 81 68 46
'CNOT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 0.78

Table S7794.  Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CNOT6 MUTATED 2 2 1 2
CNOT6 WILD-TYPE 93 72 120 78
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S7795.  Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CNOT6 MUTATED 0 4 1 3 0 0
CNOT6 WILD-TYPE 52 60 71 101 40 59
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.35

Table S7796.  Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CNOT6 MUTATED 6 2 0
CNOT6 WILD-TYPE 211 73 99
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S7797.  Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CNOT6 MUTATED 1 1 3
CNOT6 WILD-TYPE 120 107 69
'CNOT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.322 (Fisher's exact test), Q value = 0.45

Table S7798.  Gene #785: 'CNOT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CNOT6 MUTATED 1 2 2 0 0
CNOT6 WILD-TYPE 87 64 43 55 47
'ESRP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.3

Table S7799.  Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ESRP1 MUTATED 2 5 2 0
ESRP1 WILD-TYPE 202 132 45 3
'ESRP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S7800.  Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ESRP1 MUTATED 0 3 1 1 1
ESRP1 WILD-TYPE 39 93 43 87 79
'ESRP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.39

Table S7801.  Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ESRP1 MUTATED 1 4 2 0 2
ESRP1 WILD-TYPE 25 75 71 82 56
'ESRP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.13

Table S7802.  Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ESRP1 MUTATED 1 4 3 1
ESRP1 WILD-TYPE 126 47 68 68

Figure S2906.  Get High-res Image Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ESRP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.089

Table S7803.  Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ESRP1 MUTATED 0 1 5 0 2
ESRP1 WILD-TYPE 84 84 80 69 45

Figure S2907.  Get High-res Image Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ESRP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 0.48

Table S7804.  Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ESRP1 MUTATED 1 1 2 4
ESRP1 WILD-TYPE 94 73 119 76
'ESRP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00976 (Fisher's exact test), Q value = 0.056

Table S7805.  Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ESRP1 MUTATED 2 5 2 0 0 0
ESRP1 WILD-TYPE 50 59 70 104 40 59

Figure S2908.  Get High-res Image Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ESRP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.1

Table S7806.  Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ESRP1 MUTATED 9 0 0
ESRP1 WILD-TYPE 208 75 99

Figure S2909.  Get High-res Image Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ESRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S7807.  Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ESRP1 MUTATED 1 1 3
ESRP1 WILD-TYPE 120 107 69
'ESRP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.404 (Fisher's exact test), Q value = 0.52

Table S7808.  Gene #786: 'ESRP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ESRP1 MUTATED 3 0 1 0 1
ESRP1 WILD-TYPE 85 66 44 55 46
'LCE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S7809.  Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LCE1A MUTATED 4 0 0 0
LCE1A WILD-TYPE 200 137 47 3
'LCE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.67

Table S7810.  Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LCE1A MUTATED 1 1 0 2 0
LCE1A WILD-TYPE 38 95 44 86 80
'LCE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.35

Table S7811.  Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LCE1A MUTATED 0 0 0 3 1
LCE1A WILD-TYPE 26 79 73 79 57
'LCE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S7812.  Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LCE1A MUTATED 1 0 2 1
LCE1A WILD-TYPE 126 51 69 68
'LCE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7813.  Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LCE1A MUTATED 1 1 1 1 0
LCE1A WILD-TYPE 83 84 84 68 47
'LCE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.62

Table S7814.  Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LCE1A MUTATED 1 2 1 0
LCE1A WILD-TYPE 94 72 120 80
'LCE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S7815.  Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LCE1A MUTATED 0 0 0 2 0 2
LCE1A WILD-TYPE 52 64 72 102 40 57
'LCE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.005 (Fisher's exact test), Q value = 0.039

Table S7816.  Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LCE1A MUTATED 0 0 4
LCE1A WILD-TYPE 217 75 95

Figure S2910.  Get High-res Image Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'LCE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.684 (Fisher's exact test), Q value = 0.76

Table S7817.  Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LCE1A MUTATED 2 2 0
LCE1A WILD-TYPE 119 106 72
'LCE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.276 (Fisher's exact test), Q value = 0.41

Table S7818.  Gene #787: 'LCE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LCE1A MUTATED 0 1 0 2 1
LCE1A WILD-TYPE 88 65 45 53 46
'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00544 (Fisher's exact test), Q value = 0.041

Table S7819.  Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PPARGC1B MUTATED 1 9 0 0
PPARGC1B WILD-TYPE 203 128 47 3

Figure S2911.  Get High-res Image Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00785 (Fisher's exact test), Q value = 0.049

Table S7820.  Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PPARGC1B MUTATED 0 6 2 0 0
PPARGC1B WILD-TYPE 39 90 42 88 80

Figure S2912.  Get High-res Image Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PPARGC1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0821 (Fisher's exact test), Q value = 0.19

Table S7821.  Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PPARGC1B MUTATED 1 5 1 0 1
PPARGC1B WILD-TYPE 25 74 72 82 57
'PPARGC1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0196 (Fisher's exact test), Q value = 0.083

Table S7822.  Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PPARGC1B MUTATED 1 3 4 0
PPARGC1B WILD-TYPE 126 48 67 69

Figure S2913.  Get High-res Image Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.07

Table S7823.  Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PPARGC1B MUTATED 1 2 7 0 0
PPARGC1B WILD-TYPE 83 83 78 69 47

Figure S2914.  Get High-res Image Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0062 (Fisher's exact test), Q value = 0.043

Table S7824.  Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PPARGC1B MUTATED 1 1 1 7
PPARGC1B WILD-TYPE 94 73 120 73

Figure S2915.  Get High-res Image Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.68

Table S7825.  Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PPARGC1B MUTATED 2 1 4 2 0 1
PPARGC1B WILD-TYPE 50 63 68 102 40 58
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 0.41

Table S7826.  Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PPARGC1B MUTATED 8 0 2
PPARGC1B WILD-TYPE 209 75 97
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 0.78

Table S7827.  Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PPARGC1B MUTATED 4 2 1
PPARGC1B WILD-TYPE 117 106 71
'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00257 (Fisher's exact test), Q value = 0.027

Table S7828.  Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PPARGC1B MUTATED 2 0 0 0 5
PPARGC1B WILD-TYPE 86 66 45 55 42

Figure S2916.  Get High-res Image Gene #788: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MRPL24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S7829.  Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MRPL24 MUTATED 0 5 1 0
MRPL24 WILD-TYPE 204 132 46 3

Figure S2917.  Get High-res Image Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MRPL24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.082 (Fisher's exact test), Q value = 0.19

Table S7830.  Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MRPL24 MUTATED 0 4 1 0 0
MRPL24 WILD-TYPE 39 92 43 88 80
'MRPL24 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.49

Table S7831.  Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MRPL24 MUTATED 1 1 2 0 1
MRPL24 WILD-TYPE 25 78 71 82 57
'MRPL24 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.49

Table S7832.  Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MRPL24 MUTATED 2 2 1 0
MRPL24 WILD-TYPE 125 49 70 69
'MRPL24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.57

Table S7833.  Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MRPL24 MUTATED 0 1 3 1 1
MRPL24 WILD-TYPE 84 84 82 68 46
'MRPL24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0305 (Fisher's exact test), Q value = 0.11

Table S7834.  Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MRPL24 MUTATED 4 0 0 2
MRPL24 WILD-TYPE 91 74 121 78

Figure S2918.  Get High-res Image Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MRPL24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S7835.  Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MRPL24 MUTATED 1 4 0 0 1 0
MRPL24 WILD-TYPE 51 60 72 104 39 59

Figure S2919.  Get High-res Image Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MRPL24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.65

Table S7836.  Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MRPL24 MUTATED 5 0 1
MRPL24 WILD-TYPE 212 75 98
'MRPL24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S7837.  Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MRPL24 MUTATED 1 1 3
MRPL24 WILD-TYPE 120 107 69
'MRPL24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0531 (Fisher's exact test), Q value = 0.15

Table S7838.  Gene #789: 'MRPL24 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MRPL24 MUTATED 1 0 3 0 1
MRPL24 WILD-TYPE 87 66 42 55 46
'F8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00831 (Fisher's exact test), Q value = 0.051

Table S7839.  Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
F8 MUTATED 8 19 3 0
F8 WILD-TYPE 196 118 44 3

Figure S2920.  Get High-res Image Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'F8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.44

Table S7840.  Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
F8 MUTATED 3 10 3 5 2
F8 WILD-TYPE 36 86 41 83 78
'F8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00608 (Fisher's exact test), Q value = 0.043

Table S7841.  Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
F8 MUTATED 2 7 6 0 8
F8 WILD-TYPE 24 72 67 82 50

Figure S2921.  Get High-res Image Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'F8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S7842.  Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
F8 MUTATED 4 13 4 2
F8 WILD-TYPE 123 38 67 67

Figure S2922.  Get High-res Image Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'F8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0012 (Fisher's exact test), Q value = 0.018

Table S7843.  Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
F8 MUTATED 6 0 13 5 5
F8 WILD-TYPE 78 85 72 64 42

Figure S2923.  Get High-res Image Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'F8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00314 (Fisher's exact test), Q value = 0.03

Table S7844.  Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
F8 MUTATED 9 1 6 13
F8 WILD-TYPE 86 73 115 67

Figure S2924.  Get High-res Image Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'F8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0068

Table S7845.  Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
F8 MUTATED 10 10 3 3 0 4
F8 WILD-TYPE 42 54 69 101 40 55

Figure S2925.  Get High-res Image Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'F8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00318 (Fisher's exact test), Q value = 0.03

Table S7846.  Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
F8 MUTATED 23 0 7
F8 WILD-TYPE 194 75 92

Figure S2926.  Get High-res Image Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0769 (Fisher's exact test), Q value = 0.19

Table S7847.  Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
F8 MUTATED 12 3 6
F8 WILD-TYPE 109 105 66
'F8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0847 (Fisher's exact test), Q value = 0.2

Table S7848.  Gene #790: 'F8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
F8 MUTATED 6 1 4 3 7
F8 WILD-TYPE 82 65 41 52 40
'GOLT1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S7849.  Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GOLT1B MUTATED 0 5 0 0
GOLT1B WILD-TYPE 204 132 47 3

Figure S2927.  Get High-res Image Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GOLT1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S7850.  Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GOLT1B MUTATED 0 2 2 0 0
GOLT1B WILD-TYPE 39 94 42 88 80
'GOLT1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0883 (Fisher's exact test), Q value = 0.2

Table S7851.  Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GOLT1B MUTATED 1 2 0 0 0
GOLT1B WILD-TYPE 25 77 73 82 58
'GOLT1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 0.49

Table S7852.  Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GOLT1B MUTATED 1 0 2 0
GOLT1B WILD-TYPE 126 51 69 69
'GOLT1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.054 (Fisher's exact test), Q value = 0.15

Table S7853.  Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GOLT1B MUTATED 1 0 4 0 0
GOLT1B WILD-TYPE 83 85 81 69 47
'GOLT1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0476 (Fisher's exact test), Q value = 0.14

Table S7854.  Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GOLT1B MUTATED 2 0 0 3
GOLT1B WILD-TYPE 93 74 121 77

Figure S2928.  Get High-res Image Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GOLT1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S7855.  Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GOLT1B MUTATED 0 2 1 1 0 1
GOLT1B WILD-TYPE 52 62 71 103 40 58
'GOLT1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 0.88

Table S7856.  Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GOLT1B MUTATED 4 0 1
GOLT1B WILD-TYPE 213 75 98
'GOLT1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7857.  Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GOLT1B MUTATED 2 1 1
GOLT1B WILD-TYPE 119 107 71
'GOLT1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.44

Table S7858.  Gene #791: 'GOLT1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GOLT1B MUTATED 3 0 1 0 0
GOLT1B WILD-TYPE 85 66 44 55 47
'HOOK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00376 (Fisher's exact test), Q value = 0.033

Table S7859.  Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HOOK1 MUTATED 0 7 0 0
HOOK1 WILD-TYPE 204 130 47 3

Figure S2929.  Get High-res Image Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HOOK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.37

Table S7860.  Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HOOK1 MUTATED 0 4 1 0 1
HOOK1 WILD-TYPE 39 92 43 88 79
'HOOK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 0.88

Table S7861.  Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HOOK1 MUTATED 0 1 2 1 2
HOOK1 WILD-TYPE 26 78 71 81 56
'HOOK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00704 (Fisher's exact test), Q value = 0.046

Table S7862.  Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HOOK1 MUTATED 0 4 1 1
HOOK1 WILD-TYPE 127 47 70 68

Figure S2930.  Get High-res Image Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HOOK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S7863.  Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HOOK1 MUTATED 0 2 4 0 1
HOOK1 WILD-TYPE 84 83 81 69 46
'HOOK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.085

Table S7864.  Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HOOK1 MUTATED 1 0 1 5
HOOK1 WILD-TYPE 94 74 120 75

Figure S2931.  Get High-res Image Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HOOK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S7865.  Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HOOK1 MUTATED 3 2 1 1 0 0
HOOK1 WILD-TYPE 49 62 71 103 40 59
'HOOK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0746 (Fisher's exact test), Q value = 0.18

Table S7866.  Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HOOK1 MUTATED 7 0 0
HOOK1 WILD-TYPE 210 75 99
'HOOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S7867.  Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HOOK1 MUTATED 3 0 2
HOOK1 WILD-TYPE 118 108 70
'HOOK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00783 (Fisher's exact test), Q value = 0.049

Table S7868.  Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HOOK1 MUTATED 0 0 2 0 3
HOOK1 WILD-TYPE 88 66 43 55 44

Figure S2932.  Get High-res Image Gene #792: 'HOOK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARHGEF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00926 (Fisher's exact test), Q value = 0.055

Table S7869.  Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARHGEF5 MUTATED 0 6 0 0
ARHGEF5 WILD-TYPE 204 131 47 3

Figure S2933.  Get High-res Image Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGEF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S7870.  Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARHGEF5 MUTATED 0 4 2 0 1
ARHGEF5 WILD-TYPE 39 92 42 88 79
'ARHGEF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 0.4

Table S7871.  Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARHGEF5 MUTATED 1 1 1 0 2
ARHGEF5 WILD-TYPE 25 78 72 82 56
'ARHGEF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0501 (Fisher's exact test), Q value = 0.14

Table S7872.  Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARHGEF5 MUTATED 2 3 0 0
ARHGEF5 WILD-TYPE 125 48 71 69
'ARHGEF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.085

Table S7873.  Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARHGEF5 MUTATED 0 0 5 1 1
ARHGEF5 WILD-TYPE 84 85 80 68 46

Figure S2934.  Get High-res Image Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARHGEF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S7874.  Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARHGEF5 MUTATED 1 1 1 4
ARHGEF5 WILD-TYPE 94 73 120 76
'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.092

Table S7875.  Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARHGEF5 MUTATED 3 3 1 0 0 0
ARHGEF5 WILD-TYPE 49 61 71 104 40 59

Figure S2935.  Get High-res Image Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.074 (Fisher's exact test), Q value = 0.18

Table S7876.  Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARHGEF5 MUTATED 7 0 0
ARHGEF5 WILD-TYPE 210 75 99
'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S7877.  Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARHGEF5 MUTATED 4 0 2
ARHGEF5 WILD-TYPE 117 108 70
'ARHGEF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S7878.  Gene #793: 'ARHGEF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARHGEF5 MUTATED 2 0 2 0 2
ARHGEF5 WILD-TYPE 86 66 43 55 45
'CIB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0625 (Fisher's exact test), Q value = 0.16

Table S7879.  Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CIB3 MUTATED 0 4 0 0
CIB3 WILD-TYPE 204 133 47 3
'CIB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S7880.  Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CIB3 MUTATED 0 3 1 0 0
CIB3 WILD-TYPE 39 93 43 88 80
'CIB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.098

Table S7881.  Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CIB3 MUTATED 0 4 0 0 0
CIB3 WILD-TYPE 26 75 73 82 58

Figure S2936.  Get High-res Image Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CIB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0317 (Fisher's exact test), Q value = 0.11

Table S7882.  Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CIB3 MUTATED 0 1 3 0
CIB3 WILD-TYPE 127 50 68 69

Figure S2937.  Get High-res Image Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CIB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0158 (Fisher's exact test), Q value = 0.073

Table S7883.  Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CIB3 MUTATED 0 0 4 0 0
CIB3 WILD-TYPE 84 85 81 69 47

Figure S2938.  Get High-res Image Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CIB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.12

Table S7884.  Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CIB3 MUTATED 1 0 0 3
CIB3 WILD-TYPE 94 74 121 77

Figure S2939.  Get High-res Image Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CIB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.077

Table S7885.  Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CIB3 MUTATED 2 3 0 0 0 0
CIB3 WILD-TYPE 50 61 72 104 40 59

Figure S2940.  Get High-res Image Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CIB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.38

Table S7886.  Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CIB3 MUTATED 5 0 0
CIB3 WILD-TYPE 212 75 99
'CIB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 0.66

Table S7887.  Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CIB3 MUTATED 1 1 2
CIB3 WILD-TYPE 120 107 70
'CIB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S7888.  Gene #794: 'CIB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CIB3 MUTATED 1 0 2 0 1
CIB3 WILD-TYPE 87 66 43 55 46
'TBL1XR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00389 (Fisher's exact test), Q value = 0.034

Table S7889.  Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TBL1XR1 MUTATED 0 7 0 0
TBL1XR1 WILD-TYPE 204 130 47 3

Figure S2941.  Get High-res Image Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TBL1XR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.26

Table S7890.  Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TBL1XR1 MUTATED 1 3 1 0 0
TBL1XR1 WILD-TYPE 38 93 43 88 80
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.5

Table S7891.  Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TBL1XR1 MUTATED 1 0 1 2 2
TBL1XR1 WILD-TYPE 25 79 72 80 56
'TBL1XR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0491 (Fisher's exact test), Q value = 0.14

Table S7892.  Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TBL1XR1 MUTATED 1 3 0 2
TBL1XR1 WILD-TYPE 126 48 71 67

Figure S2942.  Get High-res Image Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S7893.  Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TBL1XR1 MUTATED 0 3 4 1 0
TBL1XR1 WILD-TYPE 84 82 81 68 47
'TBL1XR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.067

Table S7894.  Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TBL1XR1 MUTATED 1 2 0 5
TBL1XR1 WILD-TYPE 94 72 121 75

Figure S2943.  Get High-res Image Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.078

Table S7895.  Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TBL1XR1 MUTATED 3 4 0 1 0 0
TBL1XR1 WILD-TYPE 49 60 72 103 40 59

Figure S2944.  Get High-res Image Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S7896.  Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TBL1XR1 MUTATED 7 1 0
TBL1XR1 WILD-TYPE 210 74 99
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S7897.  Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TBL1XR1 MUTATED 4 0 1
TBL1XR1 WILD-TYPE 117 108 71
'TBL1XR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 0.44

Table S7898.  Gene #795: 'TBL1XR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TBL1XR1 MUTATED 2 0 1 0 2
TBL1XR1 WILD-TYPE 86 66 44 55 45
'WHSC1L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.1

Table S7899.  Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WHSC1L1 MUTATED 4 12 2 0
WHSC1L1 WILD-TYPE 200 125 45 3

Figure S2945.  Get High-res Image Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0141 (Fisher's exact test), Q value = 0.068

Table S7900.  Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WHSC1L1 MUTATED 0 8 1 0 2
WHSC1L1 WILD-TYPE 39 88 43 88 78

Figure S2946.  Get High-res Image Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S7901.  Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WHSC1L1 MUTATED 2 6 5 1 3
WHSC1L1 WILD-TYPE 24 73 68 81 55
'WHSC1L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00071 (Fisher's exact test), Q value = 0.013

Table S7902.  Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WHSC1L1 MUTATED 3 9 4 1
WHSC1L1 WILD-TYPE 124 42 67 68

Figure S2947.  Get High-res Image Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.035 (Fisher's exact test), Q value = 0.12

Table S7903.  Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WHSC1L1 MUTATED 1 4 9 1 3
WHSC1L1 WILD-TYPE 83 81 76 68 44

Figure S2948.  Get High-res Image Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00737 (Fisher's exact test), Q value = 0.048

Table S7904.  Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WHSC1L1 MUTATED 5 3 1 9
WHSC1L1 WILD-TYPE 90 71 120 71

Figure S2949.  Get High-res Image Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00445 (Fisher's exact test), Q value = 0.036

Table S7905.  Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WHSC1L1 MUTATED 4 8 3 1 0 1
WHSC1L1 WILD-TYPE 48 56 69 103 40 58

Figure S2950.  Get High-res Image Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.095

Table S7906.  Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WHSC1L1 MUTATED 15 1 1
WHSC1L1 WILD-TYPE 202 74 98

Figure S2951.  Get High-res Image Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S7907.  Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WHSC1L1 MUTATED 3 1 4
WHSC1L1 WILD-TYPE 118 107 68
'WHSC1L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0259 (Fisher's exact test), Q value = 0.099

Table S7908.  Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WHSC1L1 MUTATED 0 1 2 1 4
WHSC1L1 WILD-TYPE 88 65 43 54 43

Figure S2952.  Get High-res Image Gene #796: 'WHSC1L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C1ORF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00071 (Fisher's exact test), Q value = 0.013

Table S7909.  Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C1ORF14 MUTATED 1 12 1 0
C1ORF14 WILD-TYPE 203 125 46 3

Figure S2953.  Get High-res Image Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C1ORF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00524 (Fisher's exact test), Q value = 0.04

Table S7910.  Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C1ORF14 MUTATED 3 6 2 0 0
C1ORF14 WILD-TYPE 36 90 42 88 80

Figure S2954.  Get High-res Image Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C1ORF14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S7911.  Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C1ORF14 MUTATED 0 7 2 1 2
C1ORF14 WILD-TYPE 26 72 71 81 56
'C1ORF14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S7912.  Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C1ORF14 MUTATED 0 7 4 1
C1ORF14 WILD-TYPE 127 44 67 68

Figure S2955.  Get High-res Image Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C1ORF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0834 (Fisher's exact test), Q value = 0.19

Table S7913.  Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C1ORF14 MUTATED 0 3 4 2 4
C1ORF14 WILD-TYPE 84 82 81 67 43
'C1ORF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S7914.  Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C1ORF14 MUTATED 2 1 0 10
C1ORF14 WILD-TYPE 93 73 121 70

Figure S2956.  Get High-res Image Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1ORF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.5

Table S7915.  Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C1ORF14 MUTATED 4 3 2 4 1 0
C1ORF14 WILD-TYPE 48 61 70 100 39 59
'C1ORF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0301 (Fisher's exact test), Q value = 0.11

Table S7916.  Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C1ORF14 MUTATED 12 2 0
C1ORF14 WILD-TYPE 205 73 99

Figure S2957.  Get High-res Image Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C1ORF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.74

Table S7917.  Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C1ORF14 MUTATED 5 4 1
C1ORF14 WILD-TYPE 116 104 71
'C1ORF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0449 (Fisher's exact test), Q value = 0.13

Table S7918.  Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C1ORF14 MUTATED 5 1 0 0 4
C1ORF14 WILD-TYPE 83 65 45 55 43

Figure S2958.  Get High-res Image Gene #797: 'C1ORF14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CUL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00892 (Fisher's exact test), Q value = 0.053

Table S7919.  Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CUL1 MUTATED 4 14 2 0
CUL1 WILD-TYPE 200 123 45 3

Figure S2959.  Get High-res Image Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CUL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0661 (Fisher's exact test), Q value = 0.17

Table S7920.  Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CUL1 MUTATED 3 9 2 2 1
CUL1 WILD-TYPE 36 87 42 86 79
'CUL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0172 (Fisher's exact test), Q value = 0.077

Table S7921.  Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CUL1 MUTATED 0 8 3 0 3
CUL1 WILD-TYPE 26 71 70 82 55

Figure S2960.  Get High-res Image Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CUL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0436 (Fisher's exact test), Q value = 0.13

Table S7922.  Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CUL1 MUTATED 5 5 4 0
CUL1 WILD-TYPE 122 46 67 69

Figure S2961.  Get High-res Image Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CUL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S7923.  Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CUL1 MUTATED 2 2 8 4 2
CUL1 WILD-TYPE 82 83 77 65 45
'CUL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.065

Table S7924.  Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CUL1 MUTATED 7 1 2 8
CUL1 WILD-TYPE 88 73 119 72

Figure S2962.  Get High-res Image Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CUL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.29

Table S7925.  Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CUL1 MUTATED 4 7 3 2 2 2
CUL1 WILD-TYPE 48 57 69 102 38 57
'CUL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0831 (Fisher's exact test), Q value = 0.19

Table S7926.  Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CUL1 MUTATED 16 1 3
CUL1 WILD-TYPE 201 74 96
'CUL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 0.67

Table S7927.  Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CUL1 MUTATED 8 4 5
CUL1 WILD-TYPE 113 104 67
'CUL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00717 (Fisher's exact test), Q value = 0.047

Table S7928.  Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CUL1 MUTATED 6 1 3 0 7
CUL1 WILD-TYPE 82 65 42 55 40

Figure S2963.  Get High-res Image Gene #798: 'CUL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C9ORF46 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S7929.  Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C9ORF46 MUTATED 1 3 0 0
C9ORF46 WILD-TYPE 203 134 47 3
'C9ORF46 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S7930.  Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C9ORF46 MUTATED 0 2 1 0 0
C9ORF46 WILD-TYPE 39 94 43 88 80
'C9ORF46 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S7931.  Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C9ORF46 MUTATED 0 2 0 0 2
C9ORF46 WILD-TYPE 26 77 73 82 56
'C9ORF46 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S7932.  Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C9ORF46 MUTATED 1 2 1 0
C9ORF46 WILD-TYPE 126 49 70 69
'C9ORF46 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S7933.  Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C9ORF46 MUTATED 0 0 1 2 1
C9ORF46 WILD-TYPE 84 85 84 67 46
'C9ORF46 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S7934.  Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C9ORF46 MUTATED 2 0 0 2
C9ORF46 WILD-TYPE 93 74 121 78
'C9ORF46 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 0.14

Table S7935.  Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C9ORF46 MUTATED 2 2 0 0 0 0
C9ORF46 WILD-TYPE 50 62 72 104 40 59

Figure S2964.  Get High-res Image Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C9ORF46 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S7936.  Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C9ORF46 MUTATED 4 0 0
C9ORF46 WILD-TYPE 213 75 99
'C9ORF46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.57

Table S7937.  Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C9ORF46 MUTATED 2 0 1
C9ORF46 WILD-TYPE 119 108 71
'C9ORF46 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 0.67

Table S7938.  Gene #799: 'C9ORF46 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C9ORF46 MUTATED 1 0 1 0 1
C9ORF46 WILD-TYPE 87 66 44 55 46
'VPRBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.18

Table S7939.  Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
VPRBP MUTATED 1 6 1 0
VPRBP WILD-TYPE 203 131 46 3
'VPRBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 0.59

Table S7940.  Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
VPRBP MUTATED 1 1 1 0 1
VPRBP WILD-TYPE 38 95 43 88 79
'VPRBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0982 (Fisher's exact test), Q value = 0.21

Table S7941.  Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
VPRBP MUTATED 0 3 0 1 4
VPRBP WILD-TYPE 26 76 73 81 54
'VPRBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00964 (Fisher's exact test), Q value = 0.056

Table S7942.  Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
VPRBP MUTATED 2 5 0 1
VPRBP WILD-TYPE 125 46 71 68

Figure S2965.  Get High-res Image Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'VPRBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.22

Table S7943.  Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
VPRBP MUTATED 0 1 5 1 1
VPRBP WILD-TYPE 84 84 80 68 46
'VPRBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S7944.  Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
VPRBP MUTATED 3 2 0 3
VPRBP WILD-TYPE 92 72 121 77
'VPRBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0102 (Fisher's exact test), Q value = 0.057

Table S7945.  Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
VPRBP MUTATED 2 5 0 1 0 0
VPRBP WILD-TYPE 50 59 72 103 40 59

Figure S2966.  Get High-res Image Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VPRBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S7946.  Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
VPRBP MUTATED 6 1 1
VPRBP WILD-TYPE 211 74 98
'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7947.  Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
VPRBP MUTATED 2 1 1
VPRBP WILD-TYPE 119 107 71
'VPRBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.91

Table S7948.  Gene #800: 'VPRBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
VPRBP MUTATED 1 1 1 0 1
VPRBP WILD-TYPE 87 65 44 55 46
'INO80D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 0.024

Table S7949.  Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
INO80D MUTATED 3 13 0 0
INO80D WILD-TYPE 201 124 47 3

Figure S2967.  Get High-res Image Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INO80D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.365 (Fisher's exact test), Q value = 0.49

Table S7950.  Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
INO80D MUTATED 1 5 2 1 1
INO80D WILD-TYPE 38 91 42 87 79
'INO80D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00318 (Fisher's exact test), Q value = 0.03

Table S7951.  Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
INO80D MUTATED 0 4 3 0 8
INO80D WILD-TYPE 26 75 70 82 50

Figure S2968.  Get High-res Image Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'INO80D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00266 (Fisher's exact test), Q value = 0.027

Table S7952.  Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
INO80D MUTATED 3 8 3 1
INO80D WILD-TYPE 124 43 68 68

Figure S2969.  Get High-res Image Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'INO80D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 0.18

Table S7953.  Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
INO80D MUTATED 2 1 8 2 3
INO80D WILD-TYPE 82 84 77 67 44
'INO80D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S7954.  Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
INO80D MUTATED 4 1 4 7
INO80D WILD-TYPE 91 73 117 73
'INO80D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0052

Table S7955.  Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
INO80D MUTATED 5 8 1 0 0 2
INO80D WILD-TYPE 47 56 71 104 40 57

Figure S2970.  Get High-res Image Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'INO80D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S7956.  Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
INO80D MUTATED 12 1 3
INO80D WILD-TYPE 205 74 96
'INO80D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S7957.  Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
INO80D MUTATED 6 1 2
INO80D WILD-TYPE 115 107 70
'INO80D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S7958.  Gene #801: 'INO80D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
INO80D MUTATED 2 0 2 2 3
INO80D WILD-TYPE 86 66 43 53 44
'B4GALNT4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00044 (Fisher's exact test), Q value = 0.0097

Table S7959.  Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
B4GALNT4 MUTATED 2 15 1 0
B4GALNT4 WILD-TYPE 202 122 46 3

Figure S2971.  Get High-res Image Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'B4GALNT4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.37

Table S7960.  Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
B4GALNT4 MUTATED 1 7 2 1 2
B4GALNT4 WILD-TYPE 38 89 42 87 78
'B4GALNT4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.917 (Fisher's exact test), Q value = 0.95

Table S7961.  Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
B4GALNT4 MUTATED 1 4 3 2 3
B4GALNT4 WILD-TYPE 25 75 70 80 55
'B4GALNT4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.31

Table S7962.  Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
B4GALNT4 MUTATED 3 5 3 2
B4GALNT4 WILD-TYPE 124 46 68 67
'B4GALNT4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S7963.  Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
B4GALNT4 MUTATED 1 4 8 2 3
B4GALNT4 WILD-TYPE 83 81 77 67 44
'B4GALNT4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.12

Table S7964.  Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
B4GALNT4 MUTATED 6 2 2 8
B4GALNT4 WILD-TYPE 89 72 119 72

Figure S2972.  Get High-res Image Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0827 (Fisher's exact test), Q value = 0.19

Table S7965.  Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
B4GALNT4 MUTATED 5 6 2 2 2 1
B4GALNT4 WILD-TYPE 47 58 70 102 38 58
'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0658 (Fisher's exact test), Q value = 0.17

Table S7966.  Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
B4GALNT4 MUTATED 15 1 2
B4GALNT4 WILD-TYPE 202 74 97
'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S7967.  Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
B4GALNT4 MUTATED 7 4 2
B4GALNT4 WILD-TYPE 114 104 70
'B4GALNT4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00463 (Fisher's exact test), Q value = 0.037

Table S7968.  Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
B4GALNT4 MUTATED 7 0 1 0 5
B4GALNT4 WILD-TYPE 81 66 44 55 42

Figure S2973.  Get High-res Image Gene #802: 'B4GALNT4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00096 (Fisher's exact test), Q value = 0.015

Table S7969.  Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTX4 MUTATED 0 9 2 0
PTX4 WILD-TYPE 204 128 45 3

Figure S2974.  Get High-res Image Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00308 (Fisher's exact test), Q value = 0.03

Table S7970.  Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTX4 MUTATED 1 8 2 0 0
PTX4 WILD-TYPE 38 88 42 88 80

Figure S2975.  Get High-res Image Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTX4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S7971.  Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTX4 MUTATED 0 3 4 0 3
PTX4 WILD-TYPE 26 76 69 82 55
'PTX4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S7972.  Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTX4 MUTATED 2 4 3 1
PTX4 WILD-TYPE 125 47 68 68
'PTX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00468 (Fisher's exact test), Q value = 0.037

Table S7973.  Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTX4 MUTATED 0 3 8 1 0
PTX4 WILD-TYPE 84 82 77 68 47

Figure S2976.  Get High-res Image Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00294 (Fisher's exact test), Q value = 0.029

Table S7974.  Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTX4 MUTATED 1 2 1 8
PTX4 WILD-TYPE 94 72 120 72

Figure S2977.  Get High-res Image Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.67

Table S7975.  Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTX4 MUTATED 2 1 3 5 1 0
PTX4 WILD-TYPE 50 63 69 99 39 59
'PTX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 0.63

Table S7976.  Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTX4 MUTATED 9 1 2
PTX4 WILD-TYPE 208 74 97
'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S7977.  Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTX4 MUTATED 4 3 2
PTX4 WILD-TYPE 117 105 70
'PTX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 0.16

Table S7978.  Gene #803: 'PTX4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTX4 MUTATED 4 1 0 0 4
PTX4 WILD-TYPE 84 65 45 55 43
'ARHGEF17 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00065 (Fisher's exact test), Q value = 0.012

Table S7979.  Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARHGEF17 MUTATED 3 16 2 0
ARHGEF17 WILD-TYPE 201 121 45 3

Figure S2978.  Get High-res Image Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ARHGEF17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0603 (Fisher's exact test), Q value = 0.16

Table S7980.  Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARHGEF17 MUTATED 0 10 3 3 2
ARHGEF17 WILD-TYPE 39 86 41 85 78
'ARHGEF17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S7981.  Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARHGEF17 MUTATED 2 5 4 3 2
ARHGEF17 WILD-TYPE 24 74 69 79 56
'ARHGEF17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S7982.  Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARHGEF17 MUTATED 6 5 2 3
ARHGEF17 WILD-TYPE 121 46 69 66
'ARHGEF17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.1

Table S7983.  Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARHGEF17 MUTATED 3 3 11 1 2
ARHGEF17 WILD-TYPE 81 82 74 68 45

Figure S2979.  Get High-res Image Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARHGEF17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 0.17

Table S7984.  Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARHGEF17 MUTATED 2 4 5 9
ARHGEF17 WILD-TYPE 93 70 116 71
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.566 (Fisher's exact test), Q value = 0.67

Table S7985.  Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARHGEF17 MUTATED 5 5 4 4 1 2
ARHGEF17 WILD-TYPE 47 59 68 100 39 57
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 0.74

Table S7986.  Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARHGEF17 MUTATED 14 3 4
ARHGEF17 WILD-TYPE 203 72 95
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 0.73

Table S7987.  Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARHGEF17 MUTATED 8 4 4
ARHGEF17 WILD-TYPE 113 104 68
'ARHGEF17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0445 (Fisher's exact test), Q value = 0.13

Table S7988.  Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARHGEF17 MUTATED 6 2 2 0 6
ARHGEF17 WILD-TYPE 82 64 43 55 41

Figure S2980.  Get High-res Image Gene #804: 'ARHGEF17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPR137B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 0.48

Table S7989.  Gene #805: 'GPR137B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPR137B MUTATED 2 4 0 0
GPR137B WILD-TYPE 202 133 47 3
'GPR137B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S7990.  Gene #805: 'GPR137B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPR137B MUTATED 1 3 1 0 1
GPR137B WILD-TYPE 38 93 43 88 79
'GPR137B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S7991.  Gene #805: 'GPR137B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPR137B MUTATED 0 1 0 0 2
GPR137B WILD-TYPE 26 78 73 82 56
'GPR137B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.38

Table S7992.  Gene #805: 'GPR137B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPR137B MUTATED 0 1 1 1
GPR137B WILD-TYPE 127 50 70 68
'GPR137B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S7993.  Gene #805: 'GPR137B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPR137B MUTATED 1 2 2 0 1
GPR137B WILD-TYPE 83 83 83 69 46
'GPR137B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0662 (Fisher's exact test), Q value = 0.17

Table S7994.  Gene #805: 'GPR137B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPR137B MUTATED 1 0 1 4
GPR137B WILD-TYPE 94 74 120 76
'GPR137B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.75

Table S7995.  Gene #805: 'GPR137B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPR137B MUTATED 1 0 2 2 1 0
GPR137B WILD-TYPE 51 64 70 102 39 59
'GPR137B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 0.91

Table S7996.  Gene #805: 'GPR137B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPR137B MUTATED 3 1 2
GPR137B WILD-TYPE 214 74 97
'GPR137B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.446 (Fisher's exact test), Q value = 0.56

Table S7997.  Gene #805: 'GPR137B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPR137B MUTATED 3 3 0
GPR137B WILD-TYPE 118 105 72
'GPR137B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.352 (Fisher's exact test), Q value = 0.48

Table S7998.  Gene #805: 'GPR137B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPR137B MUTATED 3 0 0 1 2
GPR137B WILD-TYPE 85 66 45 54 45
'FAM109B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S7999.  Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM109B MUTATED 2 5 0 0
FAM109B WILD-TYPE 202 132 47 3
'FAM109B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S8000.  Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM109B MUTATED 0 3 2 1 0
FAM109B WILD-TYPE 39 93 42 87 80
'FAM109B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8001.  Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM109B MUTATED 0 1 1 1 1
FAM109B WILD-TYPE 26 78 72 81 57
'FAM109B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S8002.  Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM109B MUTATED 0 1 1 2
FAM109B WILD-TYPE 127 50 70 67
'FAM109B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 0.92

Table S8003.  Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM109B MUTATED 1 2 2 2 0
FAM109B WILD-TYPE 83 83 83 67 47
'FAM109B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.714 (Fisher's exact test), Q value = 0.78

Table S8004.  Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM109B MUTATED 2 2 1 2
FAM109B WILD-TYPE 93 72 120 78
'FAM109B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S8005.  Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM109B MUTATED 3 3 0 0 0 1
FAM109B WILD-TYPE 49 61 72 104 40 58

Figure S2981.  Get High-res Image Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FAM109B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S8006.  Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM109B MUTATED 6 0 1
FAM109B WILD-TYPE 211 75 98
'FAM109B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.29

Table S8007.  Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM109B MUTATED 4 0 2
FAM109B WILD-TYPE 117 108 70
'FAM109B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.066

Table S8008.  Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM109B MUTATED 1 0 1 0 4
FAM109B WILD-TYPE 87 66 44 55 43

Figure S2982.  Get High-res Image Gene #806: 'FAM109B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HGF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.8

Table S8009.  Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HGF MUTATED 8 8 2 0
HGF WILD-TYPE 196 129 45 3
'HGF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S8010.  Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HGF MUTATED 3 7 0 3 3
HGF WILD-TYPE 36 89 44 85 77
'HGF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 0.12

Table S8011.  Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HGF MUTATED 5 3 5 2 2
HGF WILD-TYPE 21 76 68 80 56

Figure S2983.  Get High-res Image Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HGF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0824 (Fisher's exact test), Q value = 0.19

Table S8012.  Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HGF MUTATED 9 3 5 0
HGF WILD-TYPE 118 48 66 69
'HGF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S8013.  Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HGF MUTATED 3 4 7 3 1
HGF WILD-TYPE 81 81 78 66 46
'HGF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 0.96

Table S8014.  Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HGF MUTATED 4 3 6 5
HGF WILD-TYPE 91 71 115 75
'HGF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S8015.  Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HGF MUTATED 1 6 1 4 2 4
HGF WILD-TYPE 51 58 71 100 38 55
'HGF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.948 (Fisher's exact test), Q value = 0.98

Table S8016.  Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HGF MUTATED 11 3 4
HGF WILD-TYPE 206 72 95
'HGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.44

Table S8017.  Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HGF MUTATED 4 5 6
HGF WILD-TYPE 117 103 66
'HGF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.44

Table S8018.  Gene #807: 'HGF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HGF MUTATED 2 3 5 3 2
HGF WILD-TYPE 86 63 40 52 45
'GPR114 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S8019.  Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPR114 MUTATED 1 7 1 0
GPR114 WILD-TYPE 203 130 46 3

Figure S2984.  Get High-res Image Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR114 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S8020.  Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPR114 MUTATED 2 5 1 0 1
GPR114 WILD-TYPE 37 91 43 88 79
'GPR114 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.45

Table S8021.  Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPR114 MUTATED 0 3 3 0 2
GPR114 WILD-TYPE 26 76 70 82 56
'GPR114 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S8022.  Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPR114 MUTATED 3 3 2 0
GPR114 WILD-TYPE 124 48 69 69
'GPR114 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S8023.  Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPR114 MUTATED 1 1 4 1 2
GPR114 WILD-TYPE 83 84 81 68 45
'GPR114 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0362 (Fisher's exact test), Q value = 0.12

Table S8024.  Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPR114 MUTATED 3 0 1 5
GPR114 WILD-TYPE 92 74 120 75

Figure S2985.  Get High-res Image Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR114 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0014 (Fisher's exact test), Q value = 0.019

Table S8025.  Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPR114 MUTATED 6 1 0 2 0 0
GPR114 WILD-TYPE 46 63 72 102 40 59

Figure S2986.  Get High-res Image Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPR114 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S8026.  Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPR114 MUTATED 7 1 1
GPR114 WILD-TYPE 210 74 98
'GPR114 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 0.94

Table S8027.  Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPR114 MUTATED 4 2 2
GPR114 WILD-TYPE 117 106 70
'GPR114 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S8028.  Gene #808: 'GPR114 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPR114 MUTATED 2 1 0 1 4
GPR114 WILD-TYPE 86 65 45 54 43
'DHRS9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S8029.  Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DHRS9 MUTATED 5 4 0 0
DHRS9 WILD-TYPE 199 133 47 3
'DHRS9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S8030.  Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DHRS9 MUTATED 0 3 1 0 1
DHRS9 WILD-TYPE 39 93 43 88 79
'DHRS9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.811 (Fisher's exact test), Q value = 0.87

Table S8031.  Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DHRS9 MUTATED 1 2 2 1 2
DHRS9 WILD-TYPE 25 77 71 81 56
'DHRS9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0436 (Fisher's exact test), Q value = 0.13

Table S8032.  Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DHRS9 MUTATED 2 4 2 0
DHRS9 WILD-TYPE 125 47 69 69

Figure S2987.  Get High-res Image Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DHRS9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.13

Table S8033.  Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DHRS9 MUTATED 0 2 5 0 2
DHRS9 WILD-TYPE 84 83 80 69 45

Figure S2988.  Get High-res Image Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DHRS9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S8034.  Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DHRS9 MUTATED 2 2 1 4
DHRS9 WILD-TYPE 93 72 120 76
'DHRS9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.06

Table S8035.  Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DHRS9 MUTATED 1 6 1 1 0 0
DHRS9 WILD-TYPE 51 58 71 103 40 59

Figure S2989.  Get High-res Image Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DHRS9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0286 (Fisher's exact test), Q value = 0.1

Table S8036.  Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DHRS9 MUTATED 9 0 0
DHRS9 WILD-TYPE 208 75 99

Figure S2990.  Get High-res Image Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DHRS9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.66

Table S8037.  Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DHRS9 MUTATED 1 1 2
DHRS9 WILD-TYPE 120 107 70
'DHRS9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S8038.  Gene #809: 'DHRS9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DHRS9 MUTATED 0 1 1 0 2
DHRS9 WILD-TYPE 88 65 44 55 45
'RGS12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00362 (Fisher's exact test), Q value = 0.033

Table S8039.  Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RGS12 MUTATED 8 20 2 0
RGS12 WILD-TYPE 196 117 45 3

Figure S2991.  Get High-res Image Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RGS12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.078

Table S8040.  Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RGS12 MUTATED 3 14 1 3 3
RGS12 WILD-TYPE 36 82 43 85 77

Figure S2992.  Get High-res Image Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RGS12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.12

Table S8041.  Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RGS12 MUTATED 4 7 8 1 5
RGS12 WILD-TYPE 22 72 65 81 53

Figure S2993.  Get High-res Image Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RGS12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S8042.  Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RGS12 MUTATED 7 15 2 1
RGS12 WILD-TYPE 120 36 69 68

Figure S2994.  Get High-res Image Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RGS12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.1

Table S8043.  Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RGS12 MUTATED 5 6 14 3 1
RGS12 WILD-TYPE 79 79 71 66 46

Figure S2995.  Get High-res Image Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RGS12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S8044.  Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RGS12 MUTATED 8 3 7 11
RGS12 WILD-TYPE 87 71 114 69
'RGS12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.33

Table S8045.  Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RGS12 MUTATED 5 10 5 5 2 3
RGS12 WILD-TYPE 47 54 67 99 38 56
'RGS12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.43

Table S8046.  Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RGS12 MUTATED 21 4 5
RGS12 WILD-TYPE 196 71 94
'RGS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S8047.  Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RGS12 MUTATED 11 5 6
RGS12 WILD-TYPE 110 103 66
'RGS12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0451 (Fisher's exact test), Q value = 0.13

Table S8048.  Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RGS12 MUTATED 4 2 5 3 8
RGS12 WILD-TYPE 84 64 40 52 39

Figure S2996.  Get High-res Image Gene #810: 'RGS12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TRIP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.18

Table S8049.  Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TRIP10 MUTATED 1 6 1 0
TRIP10 WILD-TYPE 203 131 46 3
'TRIP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.075

Table S8050.  Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TRIP10 MUTATED 0 7 0 0 2
TRIP10 WILD-TYPE 39 89 44 88 78

Figure S2997.  Get High-res Image Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TRIP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S8051.  Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TRIP10 MUTATED 1 3 3 0 0
TRIP10 WILD-TYPE 25 76 70 82 58
'TRIP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0157 (Fisher's exact test), Q value = 0.073

Table S8052.  Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TRIP10 MUTATED 1 4 2 0
TRIP10 WILD-TYPE 126 47 69 69

Figure S2998.  Get High-res Image Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRIP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00284 (Fisher's exact test), Q value = 0.028

Table S8053.  Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TRIP10 MUTATED 0 1 7 0 1
TRIP10 WILD-TYPE 84 84 78 69 46

Figure S2999.  Get High-res Image Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRIP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0927 (Fisher's exact test), Q value = 0.21

Table S8054.  Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TRIP10 MUTATED 2 0 2 5
TRIP10 WILD-TYPE 93 74 119 75
'TRIP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 0.066

Table S8055.  Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TRIP10 MUTATED 4 3 1 0 1 0
TRIP10 WILD-TYPE 48 61 71 104 39 59

Figure S3000.  Get High-res Image Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TRIP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.903 (Fisher's exact test), Q value = 0.94

Table S8056.  Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TRIP10 MUTATED 6 1 2
TRIP10 WILD-TYPE 211 74 97
'TRIP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.47

Table S8057.  Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TRIP10 MUTATED 2 1 3
TRIP10 WILD-TYPE 119 107 69
'TRIP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0366 (Fisher's exact test), Q value = 0.12

Table S8058.  Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TRIP10 MUTATED 1 0 3 0 2
TRIP10 WILD-TYPE 87 66 42 55 45

Figure S3001.  Get High-res Image Gene #811: 'TRIP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BTBD12 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S8059.  Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BTBD12 MUTATED 3 19 2 0
BTBD12 WILD-TYPE 201 118 45 3

Figure S3002.  Get High-res Image Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BTBD12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0011 (Fisher's exact test), Q value = 0.017

Table S8060.  Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BTBD12 MUTATED 1 13 3 1 1
BTBD12 WILD-TYPE 38 83 41 87 79

Figure S3003.  Get High-res Image Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BTBD12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.66

Table S8061.  Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BTBD12 MUTATED 1 5 6 3 6
BTBD12 WILD-TYPE 25 74 67 79 52
'BTBD12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0037

Table S8062.  Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BTBD12 MUTATED 4 12 2 3
BTBD12 WILD-TYPE 123 39 69 66

Figure S3004.  Get High-res Image Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BTBD12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00059 (Fisher's exact test), Q value = 0.012

Table S8063.  Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BTBD12 MUTATED 0 3 13 5 3
BTBD12 WILD-TYPE 84 82 72 64 44

Figure S3005.  Get High-res Image Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BTBD12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.012

Table S8064.  Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BTBD12 MUTATED 6 5 1 12
BTBD12 WILD-TYPE 89 69 120 68

Figure S3006.  Get High-res Image Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BTBD12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00794 (Fisher's exact test), Q value = 0.05

Table S8065.  Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BTBD12 MUTATED 9 7 3 4 1 1
BTBD12 WILD-TYPE 43 57 69 100 39 58

Figure S3007.  Get High-res Image Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BTBD12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0354 (Fisher's exact test), Q value = 0.12

Table S8066.  Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BTBD12 MUTATED 20 3 2
BTBD12 WILD-TYPE 197 72 97

Figure S3008.  Get High-res Image Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BTBD12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.026 (Fisher's exact test), Q value = 0.099

Table S8067.  Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BTBD12 MUTATED 8 1 6
BTBD12 WILD-TYPE 113 107 66

Figure S3009.  Get High-res Image Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'BTBD12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.084

Table S8068.  Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BTBD12 MUTATED 3 2 4 0 6
BTBD12 WILD-TYPE 85 64 41 55 41

Figure S3010.  Get High-res Image Gene #812: 'BTBD12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WAPAL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00563 (Fisher's exact test), Q value = 0.041

Table S8069.  Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WAPAL MUTATED 2 11 3 0
WAPAL WILD-TYPE 202 126 44 3

Figure S3011.  Get High-res Image Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WAPAL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0247 (Fisher's exact test), Q value = 0.095

Table S8070.  Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WAPAL MUTATED 0 7 3 0 4
WAPAL WILD-TYPE 39 89 41 88 76

Figure S3012.  Get High-res Image Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WAPAL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.78

Table S8071.  Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WAPAL MUTATED 2 4 3 2 3
WAPAL WILD-TYPE 24 75 70 80 55
'WAPAL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.34

Table S8072.  Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WAPAL MUTATED 5 5 3 1
WAPAL WILD-TYPE 122 46 68 68
'WAPAL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S8073.  Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WAPAL MUTATED 0 3 9 3 1
WAPAL WILD-TYPE 84 82 76 66 46

Figure S3013.  Get High-res Image Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WAPAL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S8074.  Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WAPAL MUTATED 5 3 2 6
WAPAL WILD-TYPE 90 71 119 74
'WAPAL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S8075.  Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WAPAL MUTATED 2 7 4 3 0 0
WAPAL WILD-TYPE 50 57 68 101 40 59

Figure S3014.  Get High-res Image Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WAPAL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.082

Table S8076.  Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WAPAL MUTATED 13 3 0
WAPAL WILD-TYPE 204 72 99

Figure S3015.  Get High-res Image Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WAPAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S8077.  Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WAPAL MUTATED 4 3 6
WAPAL WILD-TYPE 117 105 66
'WAPAL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00054 (Fisher's exact test), Q value = 0.011

Table S8078.  Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WAPAL MUTATED 0 3 5 0 5
WAPAL WILD-TYPE 88 63 40 55 42

Figure S3016.  Get High-res Image Gene #813: 'WAPAL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S8079.  Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CAB39L MUTATED 2 5 0 0
CAB39L WILD-TYPE 202 132 47 3
'CAB39L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.17

Table S8080.  Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CAB39L MUTATED 1 4 0 0 0
CAB39L WILD-TYPE 38 92 44 88 80
'CAB39L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.68

Table S8081.  Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CAB39L MUTATED 0 2 1 1 3
CAB39L WILD-TYPE 26 77 72 81 55
'CAB39L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00355 (Fisher's exact test), Q value = 0.032

Table S8082.  Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CAB39L MUTATED 1 5 0 1
CAB39L WILD-TYPE 126 46 71 68

Figure S3017.  Get High-res Image Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.16

Table S8083.  Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CAB39L MUTATED 0 0 4 1 1
CAB39L WILD-TYPE 84 85 81 68 46
'CAB39L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0393 (Fisher's exact test), Q value = 0.12

Table S8084.  Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CAB39L MUTATED 3 0 0 3
CAB39L WILD-TYPE 92 74 121 77

Figure S3018.  Get High-res Image Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CAB39L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S8085.  Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CAB39L MUTATED 2 2 2 1 0 0
CAB39L WILD-TYPE 50 62 70 103 40 59
'CAB39L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.51

Table S8086.  Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CAB39L MUTATED 6 0 1
CAB39L WILD-TYPE 211 75 98
'CAB39L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.35

Table S8087.  Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CAB39L MUTATED 3 0 2
CAB39L WILD-TYPE 118 108 70
'CAB39L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0688 (Fisher's exact test), Q value = 0.17

Table S8088.  Gene #814: 'CAB39L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CAB39L MUTATED 1 0 1 0 3
CAB39L WILD-TYPE 87 66 44 55 44
'ZCCHC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S8089.  Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZCCHC2 MUTATED 1 5 0 0
ZCCHC2 WILD-TYPE 203 132 47 3
'ZCCHC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.61

Table S8090.  Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZCCHC2 MUTATED 0 3 1 1 0
ZCCHC2 WILD-TYPE 39 93 43 87 80
'ZCCHC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.24

Table S8091.  Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZCCHC2 MUTATED 0 4 2 0 0
ZCCHC2 WILD-TYPE 26 75 71 82 58
'ZCCHC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00195 (Fisher's exact test), Q value = 0.023

Table S8092.  Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZCCHC2 MUTATED 0 4 2 0
ZCCHC2 WILD-TYPE 127 47 69 69

Figure S3019.  Get High-res Image Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZCCHC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.57

Table S8093.  Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZCCHC2 MUTATED 1 0 2 0 1
ZCCHC2 WILD-TYPE 83 85 83 69 46
'ZCCHC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S8094.  Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZCCHC2 MUTATED 2 0 1 1
ZCCHC2 WILD-TYPE 93 74 120 79
'ZCCHC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S8095.  Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZCCHC2 MUTATED 1 2 2 0 0 1
ZCCHC2 WILD-TYPE 51 62 70 104 40 58
'ZCCHC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.65

Table S8096.  Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZCCHC2 MUTATED 5 0 1
ZCCHC2 WILD-TYPE 212 75 98
'ZCCHC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S8097.  Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZCCHC2 MUTATED 3 0 1
ZCCHC2 WILD-TYPE 118 108 71
'ZCCHC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S8098.  Gene #815: 'ZCCHC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZCCHC2 MUTATED 1 0 1 1 1
ZCCHC2 WILD-TYPE 87 66 44 54 46
'WDR90 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0563 (Fisher's exact test), Q value = 0.15

Table S8099.  Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WDR90 MUTATED 5 11 4 0
WDR90 WILD-TYPE 199 126 43 3
'WDR90 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.012

Table S8100.  Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WDR90 MUTATED 3 10 0 0 1
WDR90 WILD-TYPE 36 86 44 88 79

Figure S3020.  Get High-res Image Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WDR90 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S8101.  Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WDR90 MUTATED 1 7 3 1 4
WDR90 WILD-TYPE 25 72 70 81 54
'WDR90 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0278 (Fisher's exact test), Q value = 0.1

Table S8102.  Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WDR90 MUTATED 3 7 3 3
WDR90 WILD-TYPE 124 44 68 66

Figure S3021.  Get High-res Image Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WDR90 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00674 (Fisher's exact test), Q value = 0.045

Table S8103.  Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WDR90 MUTATED 0 2 9 5 3
WDR90 WILD-TYPE 84 83 76 64 44

Figure S3022.  Get High-res Image Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WDR90 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.015

Table S8104.  Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WDR90 MUTATED 6 4 0 9
WDR90 WILD-TYPE 89 70 121 71

Figure S3023.  Get High-res Image Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WDR90 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.08

Table S8105.  Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WDR90 MUTATED 5 7 4 2 2 0
WDR90 WILD-TYPE 47 57 68 102 38 59

Figure S3024.  Get High-res Image Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WDR90 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00416 (Fisher's exact test), Q value = 0.035

Table S8106.  Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WDR90 MUTATED 17 3 0
WDR90 WILD-TYPE 200 72 99

Figure S3025.  Get High-res Image Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'WDR90 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S8107.  Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WDR90 MUTATED 8 2 2
WDR90 WILD-TYPE 113 106 70
'WDR90 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.076

Table S8108.  Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WDR90 MUTATED 4 1 1 0 6
WDR90 WILD-TYPE 84 65 44 55 41

Figure S3026.  Get High-res Image Gene #816: 'WDR90 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UGT2A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.15

Table S8109.  Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UGT2A3 MUTATED 1 6 0 0
UGT2A3 WILD-TYPE 203 131 47 3
'UGT2A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8110.  Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UGT2A3 MUTATED 0 2 0 1 1
UGT2A3 WILD-TYPE 39 94 44 87 79
'UGT2A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.804 (Fisher's exact test), Q value = 0.86

Table S8111.  Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UGT2A3 MUTATED 1 2 1 1 1
UGT2A3 WILD-TYPE 25 77 72 81 57
'UGT2A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S8112.  Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UGT2A3 MUTATED 3 2 0 1
UGT2A3 WILD-TYPE 124 49 71 68
'UGT2A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S8113.  Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UGT2A3 MUTATED 0 1 2 2 1
UGT2A3 WILD-TYPE 84 84 83 67 46
'UGT2A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.808 (Fisher's exact test), Q value = 0.86

Table S8114.  Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UGT2A3 MUTATED 2 1 1 2
UGT2A3 WILD-TYPE 93 73 120 78
'UGT2A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.12

Table S8115.  Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UGT2A3 MUTATED 1 4 2 0 0 0
UGT2A3 WILD-TYPE 51 60 70 104 40 59

Figure S3027.  Get High-res Image Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UGT2A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S8116.  Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UGT2A3 MUTATED 6 0 1
UGT2A3 WILD-TYPE 211 75 98
'UGT2A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S8117.  Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
UGT2A3 MUTATED 3 0 1
UGT2A3 WILD-TYPE 118 108 71
'UGT2A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00806 (Fisher's exact test), Q value = 0.05

Table S8118.  Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
UGT2A3 MUTATED 0 0 1 0 3
UGT2A3 WILD-TYPE 88 66 44 55 44

Figure S3028.  Get High-res Image Gene #817: 'UGT2A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BRF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S8119.  Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BRF1 MUTATED 3 7 1 0
BRF1 WILD-TYPE 201 130 46 3
'BRF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.45

Table S8120.  Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BRF1 MUTATED 1 4 0 2 0
BRF1 WILD-TYPE 38 92 44 86 80
'BRF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.944 (Fisher's exact test), Q value = 0.97

Table S8121.  Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BRF1 MUTATED 0 3 2 3 1
BRF1 WILD-TYPE 26 76 71 79 57
'BRF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.065

Table S8122.  Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BRF1 MUTATED 0 3 2 4
BRF1 WILD-TYPE 127 48 69 65

Figure S3029.  Get High-res Image Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BRF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 0.99

Table S8123.  Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BRF1 MUTATED 2 3 3 1 1
BRF1 WILD-TYPE 82 82 82 68 46
'BRF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.61

Table S8124.  Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BRF1 MUTATED 2 4 2 2
BRF1 WILD-TYPE 93 70 119 78
'BRF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.065

Table S8125.  Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BRF1 MUTATED 1 4 0 1 4 1
BRF1 WILD-TYPE 51 60 72 103 36 58

Figure S3030.  Get High-res Image Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BRF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 0.83

Table S8126.  Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BRF1 MUTATED 6 3 2
BRF1 WILD-TYPE 211 72 97
'BRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S8127.  Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BRF1 MUTATED 4 1 2
BRF1 WILD-TYPE 117 107 70
'BRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 0.31

Table S8128.  Gene #818: 'BRF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BRF1 MUTATED 4 0 1 0 2
BRF1 WILD-TYPE 84 66 44 55 45
'PLK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 0.19

Table S8129.  Gene #819: 'PLK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLK1 MUTATED 4 10 2 0
PLK1 WILD-TYPE 200 127 45 3
'PLK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.15

Table S8130.  Gene #819: 'PLK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLK1 MUTATED 1 8 3 1 1
PLK1 WILD-TYPE 38 88 41 87 79
'PLK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.43

Table S8131.  Gene #819: 'PLK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLK1 MUTATED 1 7 3 2 1
PLK1 WILD-TYPE 25 72 70 80 57
'PLK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S8132.  Gene #819: 'PLK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLK1 MUTATED 4 5 4 1
PLK1 WILD-TYPE 123 46 67 68
'PLK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.36

Table S8133.  Gene #819: 'PLK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLK1 MUTATED 1 5 5 1 3
PLK1 WILD-TYPE 83 80 80 68 44
'PLK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.47

Table S8134.  Gene #819: 'PLK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLK1 MUTATED 2 3 4 6
PLK1 WILD-TYPE 93 71 117 74
'PLK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.52

Table S8135.  Gene #819: 'PLK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLK1 MUTATED 2 2 4 4 3 0
PLK1 WILD-TYPE 50 62 68 100 37 59
'PLK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S8136.  Gene #819: 'PLK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLK1 MUTATED 10 4 1
PLK1 WILD-TYPE 207 71 98
'PLK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 0.68

Table S8137.  Gene #819: 'PLK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLK1 MUTATED 5 5 1
PLK1 WILD-TYPE 116 103 71
'PLK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S8138.  Gene #819: 'PLK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLK1 MUTATED 5 3 1 0 2
PLK1 WILD-TYPE 83 63 44 55 45
'DUSP9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 0.85

Table S8139.  Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DUSP9 MUTATED 5 3 0 0
DUSP9 WILD-TYPE 199 134 47 3
'DUSP9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.68

Table S8140.  Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DUSP9 MUTATED 1 2 1 2 0
DUSP9 WILD-TYPE 38 94 43 86 80
'DUSP9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S8141.  Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DUSP9 MUTATED 0 3 0 0 2
DUSP9 WILD-TYPE 26 76 73 82 56
'DUSP9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S8142.  Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DUSP9 MUTATED 0 3 2 0
DUSP9 WILD-TYPE 127 48 69 69

Figure S3031.  Get High-res Image Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S8143.  Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DUSP9 MUTATED 3 2 1 0 1
DUSP9 WILD-TYPE 81 83 84 69 46
'DUSP9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0432 (Fisher's exact test), Q value = 0.13

Table S8144.  Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DUSP9 MUTATED 0 0 3 4
DUSP9 WILD-TYPE 95 74 118 76

Figure S3032.  Get High-res Image Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0509 (Fisher's exact test), Q value = 0.14

Table S8145.  Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DUSP9 MUTATED 3 1 1 0 0 3
DUSP9 WILD-TYPE 49 63 71 104 40 56
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S8146.  Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DUSP9 MUTATED 5 0 3
DUSP9 WILD-TYPE 212 75 96
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.43

Table S8147.  Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DUSP9 MUTATED 4 1 0
DUSP9 WILD-TYPE 117 107 72
'DUSP9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.482 (Fisher's exact test), Q value = 0.59

Table S8148.  Gene #820: 'DUSP9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DUSP9 MUTATED 2 0 0 2 1
DUSP9 WILD-TYPE 86 66 45 53 46
'KIAA0427 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0044

Table S8149.  Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA0427 MUTATED 1 14 1 0
KIAA0427 WILD-TYPE 203 123 46 3

Figure S3033.  Get High-res Image Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA0427 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S8150.  Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA0427 MUTATED 2 7 1 1 0
KIAA0427 WILD-TYPE 37 89 43 87 80

Figure S3034.  Get High-res Image Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA0427 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.18

Table S8151.  Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA0427 MUTATED 1 6 5 0 3
KIAA0427 WILD-TYPE 25 73 68 82 55
'KIAA0427 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S8152.  Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA0427 MUTATED 1 11 3 0
KIAA0427 WILD-TYPE 126 40 68 69

Figure S3035.  Get High-res Image Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0427 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.48

Table S8153.  Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA0427 MUTATED 1 2 5 3 3
KIAA0427 WILD-TYPE 83 83 80 66 44
'KIAA0427 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.074

Table S8154.  Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA0427 MUTATED 5 1 1 7
KIAA0427 WILD-TYPE 90 73 120 73

Figure S3036.  Get High-res Image Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA0427 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S8155.  Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA0427 MUTATED 3 9 0 1 2 1
KIAA0427 WILD-TYPE 49 55 72 103 38 58

Figure S3037.  Get High-res Image Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIAA0427 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.093

Table S8156.  Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA0427 MUTATED 14 0 2
KIAA0427 WILD-TYPE 203 75 97

Figure S3038.  Get High-res Image Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIAA0427 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0324 (Fisher's exact test), Q value = 0.11

Table S8157.  Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA0427 MUTATED 4 1 6
KIAA0427 WILD-TYPE 117 107 66

Figure S3039.  Get High-res Image Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIAA0427 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0253 (Fisher's exact test), Q value = 0.097

Table S8158.  Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA0427 MUTATED 2 0 4 1 4
KIAA0427 WILD-TYPE 86 66 41 54 43

Figure S3040.  Get High-res Image Gene #821: 'KIAA0427 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.14

Table S8159.  Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UBXN6 MUTATED 2 8 2 0
UBXN6 WILD-TYPE 202 129 45 3

Figure S3041.  Get High-res Image Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UBXN6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00295 (Fisher's exact test), Q value = 0.029

Table S8160.  Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UBXN6 MUTATED 1 8 2 0 0
UBXN6 WILD-TYPE 38 88 42 88 80

Figure S3042.  Get High-res Image Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'UBXN6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.063

Table S8161.  Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UBXN6 MUTATED 0 7 1 0 1
UBXN6 WILD-TYPE 26 72 72 82 57

Figure S3043.  Get High-res Image Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'UBXN6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00046 (Fisher's exact test), Q value = 0.01

Table S8162.  Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UBXN6 MUTATED 0 4 5 0
UBXN6 WILD-TYPE 127 47 66 69

Figure S3044.  Get High-res Image Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0211 (Fisher's exact test), Q value = 0.087

Table S8163.  Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UBXN6 MUTATED 1 0 7 2 1
UBXN6 WILD-TYPE 83 85 78 67 46

Figure S3045.  Get High-res Image Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'UBXN6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S8164.  Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UBXN6 MUTATED 3 2 1 5
UBXN6 WILD-TYPE 92 72 120 75
'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.069

Table S8165.  Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UBXN6 MUTATED 2 4 5 0 1 0
UBXN6 WILD-TYPE 50 60 67 104 39 59

Figure S3046.  Get High-res Image Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00507 (Fisher's exact test), Q value = 0.039

Table S8166.  Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UBXN6 MUTATED 12 0 0
UBXN6 WILD-TYPE 205 75 99

Figure S3047.  Get High-res Image Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00414 (Fisher's exact test), Q value = 0.035

Table S8167.  Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
UBXN6 MUTATED 3 0 6
UBXN6 WILD-TYPE 118 108 66

Figure S3048.  Get High-res Image Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'UBXN6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.073

Table S8168.  Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
UBXN6 MUTATED 2 0 3 0 4
UBXN6 WILD-TYPE 86 66 42 55 43

Figure S3049.  Get High-res Image Gene #822: 'UBXN6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EEF2K MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S8169.  Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EEF2K MUTATED 2 5 2 0
EEF2K WILD-TYPE 202 132 45 3
'EEF2K MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 0.61

Table S8170.  Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EEF2K MUTATED 2 2 0 1 1
EEF2K WILD-TYPE 37 94 44 87 79
'EEF2K MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.61

Table S8171.  Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EEF2K MUTATED 1 1 2 1 3
EEF2K WILD-TYPE 25 78 71 81 55
'EEF2K MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S8172.  Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EEF2K MUTATED 4 3 0 1
EEF2K WILD-TYPE 123 48 71 68
'EEF2K MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S8173.  Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EEF2K MUTATED 2 2 3 1 1
EEF2K WILD-TYPE 82 83 82 68 46
'EEF2K MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.703 (Fisher's exact test), Q value = 0.78

Table S8174.  Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EEF2K MUTATED 3 1 2 3
EEF2K WILD-TYPE 92 73 119 77
'EEF2K MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.1

Table S8175.  Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EEF2K MUTATED 1 5 3 0 0 1
EEF2K WILD-TYPE 51 59 69 104 40 58

Figure S3050.  Get High-res Image Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EEF2K MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.5

Table S8176.  Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EEF2K MUTATED 8 1 1
EEF2K WILD-TYPE 209 74 98
'EEF2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.58 (Fisher's exact test), Q value = 0.68

Table S8177.  Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EEF2K MUTATED 4 1 1
EEF2K WILD-TYPE 117 107 71
'EEF2K MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.797 (Fisher's exact test), Q value = 0.85

Table S8178.  Gene #823: 'EEF2K MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EEF2K MUTATED 1 1 1 1 2
EEF2K WILD-TYPE 87 65 44 54 45
'PYHIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S8179.  Gene #824: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PYHIN1 MUTATED 6 5 0 0
PYHIN1 WILD-TYPE 198 132 47 3
'PYHIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0825 (Fisher's exact test), Q value = 0.19

Table S8180.  Gene #824: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PYHIN1 MUTATED 1 7 0 1 1
PYHIN1 WILD-TYPE 38 89 44 87 79
'PYHIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S8181.  Gene #824: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PYHIN1 MUTATED 1 1 5 2 2
PYHIN1 WILD-TYPE 25 78 68 80 56
'PYHIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 0.78

Table S8182.  Gene #824: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PYHIN1 MUTATED 6 2 1 2
PYHIN1 WILD-TYPE 121 49 70 67
'PYHIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.45

Table S8183.  Gene #824: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PYHIN1 MUTATED 1 2 2 5 1
PYHIN1 WILD-TYPE 83 83 83 64 46
'PYHIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.38

Table S8184.  Gene #824: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PYHIN1 MUTATED 5 2 1 3
PYHIN1 WILD-TYPE 90 72 120 77
'PYHIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.18

Table S8185.  Gene #824: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PYHIN1 MUTATED 3 2 0 3 3 0
PYHIN1 WILD-TYPE 49 62 72 101 37 59
'PYHIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.64

Table S8186.  Gene #824: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PYHIN1 MUTATED 6 1 4
PYHIN1 WILD-TYPE 211 74 95
'PYHIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S8187.  Gene #824: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PYHIN1 MUTATED 6 2 1
PYHIN1 WILD-TYPE 115 106 71
'PYHIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 0.88

Table S8188.  Gene #824: 'PYHIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PYHIN1 MUTATED 4 1 1 1 2
PYHIN1 WILD-TYPE 84 65 44 54 45
'C9ORF25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 0.14

Table S8189.  Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C9ORF25 MUTATED 0 3 2 0
C9ORF25 WILD-TYPE 204 134 45 3

Figure S3051.  Get High-res Image Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C9ORF25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S8190.  Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C9ORF25 MUTATED 1 3 0 0 1
C9ORF25 WILD-TYPE 38 93 44 88 79
'C9ORF25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S8191.  Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C9ORF25 MUTATED 1 0 2 0 2
C9ORF25 WILD-TYPE 25 79 71 82 56
'C9ORF25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0495 (Fisher's exact test), Q value = 0.14

Table S8192.  Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C9ORF25 MUTATED 2 3 0 0
C9ORF25 WILD-TYPE 125 48 71 69

Figure S3052.  Get High-res Image Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C9ORF25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.729 (Fisher's exact test), Q value = 0.8

Table S8193.  Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C9ORF25 MUTATED 0 1 2 1 1
C9ORF25 WILD-TYPE 84 84 83 68 46
'C9ORF25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.91

Table S8194.  Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C9ORF25 MUTATED 1 1 1 2
C9ORF25 WILD-TYPE 94 73 120 78
'C9ORF25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 0.87

Table S8195.  Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C9ORF25 MUTATED 1 1 2 1 0 0
C9ORF25 WILD-TYPE 51 63 70 103 40 59
'C9ORF25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S8196.  Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C9ORF25 MUTATED 4 1 0
C9ORF25 WILD-TYPE 213 74 99
'C9ORF25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.736 (Fisher's exact test), Q value = 0.8

Table S8197.  Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C9ORF25 MUTATED 2 1 2
C9ORF25 WILD-TYPE 119 107 70
'C9ORF25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.562 (Fisher's exact test), Q value = 0.66

Table S8198.  Gene #825: 'C9ORF25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C9ORF25 MUTATED 1 1 1 0 2
C9ORF25 WILD-TYPE 87 65 44 55 45
'CD58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S8199.  Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CD58 MUTATED 0 6 1 0
CD58 WILD-TYPE 204 131 46 3

Figure S3053.  Get High-res Image Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CD58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S8200.  Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CD58 MUTATED 0 3 2 0 1
CD58 WILD-TYPE 39 93 42 88 79
'CD58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.11

Table S8201.  Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CD58 MUTATED 1 0 1 0 3
CD58 WILD-TYPE 25 79 72 82 55

Figure S3054.  Get High-res Image Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CD58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.44

Table S8202.  Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CD58 MUTATED 2 2 0 1
CD58 WILD-TYPE 125 49 71 68
'CD58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S8203.  Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CD58 MUTATED 0 1 4 2 0
CD58 WILD-TYPE 84 84 81 67 47
'CD58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 0.99

Table S8204.  Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CD58 MUTATED 2 1 2 2
CD58 WILD-TYPE 93 73 119 78
'CD58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0338 (Fisher's exact test), Q value = 0.11

Table S8205.  Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CD58 MUTATED 1 4 2 0 0 0
CD58 WILD-TYPE 51 60 70 104 40 59

Figure S3055.  Get High-res Image Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CD58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0753 (Fisher's exact test), Q value = 0.18

Table S8206.  Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CD58 MUTATED 7 0 0
CD58 WILD-TYPE 210 75 99
'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.091

Table S8207.  Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CD58 MUTATED 2 0 4
CD58 WILD-TYPE 119 108 68

Figure S3056.  Get High-res Image Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CD58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S8208.  Gene #826: 'CD58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CD58 MUTATED 2 0 2 0 2
CD58 WILD-TYPE 86 66 43 55 45
'C20ORF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.1

Table S8209.  Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C20ORF7 MUTATED 0 5 1 0
C20ORF7 WILD-TYPE 204 132 46 3

Figure S3057.  Get High-res Image Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C20ORF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.67

Table S8210.  Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C20ORF7 MUTATED 0 2 1 0 2
C20ORF7 WILD-TYPE 39 94 43 88 78
'C20ORF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.957 (Fisher's exact test), Q value = 0.99

Table S8211.  Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C20ORF7 MUTATED 0 2 1 1 1
C20ORF7 WILD-TYPE 26 77 72 81 57
'C20ORF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.59

Table S8212.  Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C20ORF7 MUTATED 1 2 1 1
C20ORF7 WILD-TYPE 126 49 70 68
'C20ORF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S8213.  Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C20ORF7 MUTATED 1 1 3 0 1
C20ORF7 WILD-TYPE 83 84 82 69 46
'C20ORF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 0.14

Table S8214.  Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C20ORF7 MUTATED 0 1 1 4
C20ORF7 WILD-TYPE 95 73 120 76
'C20ORF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.49

Table S8215.  Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C20ORF7 MUTATED 2 1 0 3 0 0
C20ORF7 WILD-TYPE 50 63 72 101 40 59
'C20ORF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.36

Table S8216.  Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C20ORF7 MUTATED 4 2 0
C20ORF7 WILD-TYPE 213 73 99
'C20ORF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S8217.  Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C20ORF7 MUTATED 2 3 0
C20ORF7 WILD-TYPE 119 105 72
'C20ORF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.78

Table S8218.  Gene #827: 'C20ORF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C20ORF7 MUTATED 2 2 0 0 1
C20ORF7 WILD-TYPE 86 64 45 55 46
'POLE3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S8219.  Gene #828: 'POLE3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
POLE3 MUTATED 0 3 0 0
POLE3 WILD-TYPE 204 134 47 3
'POLE3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.46

Table S8220.  Gene #828: 'POLE3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
POLE3 MUTATED 0 2 1 0 0
POLE3 WILD-TYPE 39 94 43 88 80
'POLE3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 0.82

Table S8221.  Gene #828: 'POLE3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
POLE3 MUTATED 0 1 1 0 1
POLE3 WILD-TYPE 84 84 84 69 46
'POLE3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.088 (Fisher's exact test), Q value = 0.2

Table S8222.  Gene #828: 'POLE3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
POLE3 MUTATED 0 1 0 2
POLE3 WILD-TYPE 95 73 121 78
'POLE3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S8223.  Gene #828: 'POLE3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
POLE3 MUTATED 1 1 0 1 0 0
POLE3 WILD-TYPE 51 63 72 103 40 59
'POLE3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.762 (Fisher's exact test), Q value = 0.83

Table S8224.  Gene #828: 'POLE3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
POLE3 MUTATED 2 1 0
POLE3 WILD-TYPE 215 74 99
'POLE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8225.  Gene #828: 'POLE3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
POLE3 MUTATED 1 1 1
POLE3 WILD-TYPE 120 107 71
'POLE3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.927 (Fisher's exact test), Q value = 0.96

Table S8226.  Gene #828: 'POLE3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
POLE3 MUTATED 1 1 0 0 1
POLE3 WILD-TYPE 87 65 45 55 46
'CHMP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.18

Table S8227.  Gene #829: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CHMP7 MUTATED 0 4 1 0
CHMP7 WILD-TYPE 204 133 46 3
'CHMP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S8228.  Gene #829: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CHMP7 MUTATED 1 1 1 0 0
CHMP7 WILD-TYPE 38 95 43 88 80
'CHMP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 0.87

Table S8229.  Gene #829: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CHMP7 MUTATED 1 1 1 1 1
CHMP7 WILD-TYPE 25 78 72 81 57
'CHMP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.477 (Fisher's exact test), Q value = 0.59

Table S8230.  Gene #829: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CHMP7 MUTATED 1 2 1 1
CHMP7 WILD-TYPE 126 49 70 68
'CHMP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.84

Table S8231.  Gene #829: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CHMP7 MUTATED 1 1 0 1 1
CHMP7 WILD-TYPE 83 84 85 68 46
'CHMP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S8232.  Gene #829: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CHMP7 MUTATED 2 1 0 1
CHMP7 WILD-TYPE 93 73 121 79
'CHMP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.84

Table S8233.  Gene #829: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CHMP7 MUTATED 1 1 0 1 1 1
CHMP7 WILD-TYPE 51 63 72 103 39 58
'CHMP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8234.  Gene #829: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CHMP7 MUTATED 3 1 1
CHMP7 WILD-TYPE 214 74 98
'CHMP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.57

Table S8235.  Gene #829: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CHMP7 MUTATED 2 0 1
CHMP7 WILD-TYPE 119 108 71
'CHMP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S8236.  Gene #829: 'CHMP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CHMP7 MUTATED 0 1 0 0 2
CHMP7 WILD-TYPE 88 65 45 55 45
'AMELX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.57

Table S8237.  Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AMELX MUTATED 2 3 0 0
AMELX WILD-TYPE 202 134 47 3
'AMELX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.085

Table S8238.  Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AMELX MUTATED 0 5 0 0 0
AMELX WILD-TYPE 39 91 44 88 80

Figure S3058.  Get High-res Image Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AMELX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.35 (Fisher's exact test), Q value = 0.48

Table S8239.  Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AMELX MUTATED 0 0 3 1 1
AMELX WILD-TYPE 26 79 70 81 57
'AMELX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0572 (Fisher's exact test), Q value = 0.16

Table S8240.  Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AMELX MUTATED 1 3 0 1
AMELX WILD-TYPE 126 48 71 68
'AMELX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.087

Table S8241.  Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AMELX MUTATED 0 0 4 0 1
AMELX WILD-TYPE 84 85 81 69 46

Figure S3059.  Get High-res Image Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AMELX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0962 (Fisher's exact test), Q value = 0.21

Table S8242.  Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AMELX MUTATED 1 1 0 3
AMELX WILD-TYPE 94 73 121 77
'AMELX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0562 (Fisher's exact test), Q value = 0.15

Table S8243.  Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AMELX MUTATED 2 2 0 0 1 0
AMELX WILD-TYPE 50 62 72 104 39 59
'AMELX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8244.  Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AMELX MUTATED 3 1 1
AMELX WILD-TYPE 214 74 98
'AMELX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0127 (Fisher's exact test), Q value = 0.065

Table S8245.  Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AMELX MUTATED 0 0 3
AMELX WILD-TYPE 121 108 69

Figure S3060.  Get High-res Image Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'AMELX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.67

Table S8246.  Gene #830: 'AMELX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AMELX MUTATED 1 0 1 0 1
AMELX WILD-TYPE 87 66 44 55 46
'NEK8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.15

Table S8247.  Gene #831: 'NEK8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NEK8 MUTATED 2 6 3 0
NEK8 WILD-TYPE 202 131 44 3
'NEK8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S8248.  Gene #831: 'NEK8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NEK8 MUTATED 2 5 0 2 1
NEK8 WILD-TYPE 37 91 44 86 79
'NEK8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S8249.  Gene #831: 'NEK8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NEK8 MUTATED 1 5 3 1 1
NEK8 WILD-TYPE 25 74 70 81 57
'NEK8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S8250.  Gene #831: 'NEK8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NEK8 MUTATED 4 2 5 0
NEK8 WILD-TYPE 123 49 66 69
'NEK8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0644 (Fisher's exact test), Q value = 0.17

Table S8251.  Gene #831: 'NEK8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NEK8 MUTATED 2 0 6 1 1
NEK8 WILD-TYPE 82 85 79 68 46
'NEK8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S8252.  Gene #831: 'NEK8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NEK8 MUTATED 2 1 2 5
NEK8 WILD-TYPE 93 73 119 75
'NEK8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 0.68

Table S8253.  Gene #831: 'NEK8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NEK8 MUTATED 2 4 1 2 1 1
NEK8 WILD-TYPE 50 60 71 102 39 58
'NEK8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0615 (Fisher's exact test), Q value = 0.16

Table S8254.  Gene #831: 'NEK8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NEK8 MUTATED 10 0 1
NEK8 WILD-TYPE 207 75 98
'NEK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S8255.  Gene #831: 'NEK8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NEK8 MUTATED 2 2 4
NEK8 WILD-TYPE 119 106 68
'NEK8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.45

Table S8256.  Gene #831: 'NEK8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NEK8 MUTATED 1 1 3 1 2
NEK8 WILD-TYPE 87 65 42 54 45
'POMGNT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.77

Table S8257.  Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
POMGNT1 MUTATED 4 5 1 0
POMGNT1 WILD-TYPE 200 132 46 3
'POMGNT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 0.5

Table S8258.  Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
POMGNT1 MUTATED 0 5 1 1 1
POMGNT1 WILD-TYPE 39 91 43 87 79
'POMGNT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S8259.  Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
POMGNT1 MUTATED 3 1 2 0 1
POMGNT1 WILD-TYPE 23 78 71 82 57

Figure S3061.  Get High-res Image Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'POMGNT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.39 (Fisher's exact test), Q value = 0.51

Table S8260.  Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
POMGNT1 MUTATED 4 2 1 0
POMGNT1 WILD-TYPE 123 49 70 69
'POMGNT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0711 (Fisher's exact test), Q value = 0.18

Table S8261.  Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
POMGNT1 MUTATED 1 0 5 1 2
POMGNT1 WILD-TYPE 83 85 80 68 45
'POMGNT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00383 (Fisher's exact test), Q value = 0.033

Table S8262.  Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
POMGNT1 MUTATED 4 0 0 5
POMGNT1 WILD-TYPE 91 74 121 75

Figure S3062.  Get High-res Image Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S8263.  Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
POMGNT1 MUTATED 0 4 3 1 1 1
POMGNT1 WILD-TYPE 52 60 69 103 39 58
'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.5

Table S8264.  Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
POMGNT1 MUTATED 8 1 1
POMGNT1 WILD-TYPE 209 74 98
'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.16

Table S8265.  Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
POMGNT1 MUTATED 1 1 4
POMGNT1 WILD-TYPE 120 107 68
'POMGNT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S8266.  Gene #832: 'POMGNT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
POMGNT1 MUTATED 1 1 3 0 1
POMGNT1 WILD-TYPE 87 65 42 55 46
'ATP2B4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.084

Table S8267.  Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ATP2B4 MUTATED 3 11 1 0
ATP2B4 WILD-TYPE 201 126 46 3

Figure S3063.  Get High-res Image Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATP2B4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S8268.  Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ATP2B4 MUTATED 2 7 2 1 2
ATP2B4 WILD-TYPE 37 89 42 87 78
'ATP2B4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.54

Table S8269.  Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ATP2B4 MUTATED 0 6 2 2 3
ATP2B4 WILD-TYPE 26 73 71 80 55
'ATP2B4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.059

Table S8270.  Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ATP2B4 MUTATED 1 5 5 2
ATP2B4 WILD-TYPE 126 46 66 67

Figure S3064.  Get High-res Image Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATP2B4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S8271.  Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ATP2B4 MUTATED 1 3 7 1 2
ATP2B4 WILD-TYPE 83 82 78 68 45
'ATP2B4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S8272.  Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ATP2B4 MUTATED 3 1 3 7
ATP2B4 WILD-TYPE 92 73 118 73
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 0.2

Table S8273.  Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ATP2B4 MUTATED 2 6 2 2 2 0
ATP2B4 WILD-TYPE 50 58 70 102 38 59
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.68

Table S8274.  Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ATP2B4 MUTATED 10 2 2
ATP2B4 WILD-TYPE 207 73 97
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S8275.  Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ATP2B4 MUTATED 5 2 6
ATP2B4 WILD-TYPE 116 106 66
'ATP2B4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.22

Table S8276.  Gene #833: 'ATP2B4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ATP2B4 MUTATED 5 1 3 0 4
ATP2B4 WILD-TYPE 83 65 42 55 43
'KIAA1539 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.08

Table S8277.  Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1539 MUTATED 1 6 3 0
KIAA1539 WILD-TYPE 203 131 44 3

Figure S3065.  Get High-res Image Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1539 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0798 (Fisher's exact test), Q value = 0.19

Table S8278.  Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1539 MUTATED 1 6 1 0 1
KIAA1539 WILD-TYPE 38 90 43 88 79
'KIAA1539 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.616 (Fisher's exact test), Q value = 0.71

Table S8279.  Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1539 MUTATED 0 3 2 1 3
KIAA1539 WILD-TYPE 26 76 71 81 55
'KIAA1539 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S8280.  Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1539 MUTATED 1 5 2 1
KIAA1539 WILD-TYPE 126 46 69 68

Figure S3066.  Get High-res Image Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1539 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.067

Table S8281.  Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1539 MUTATED 0 1 7 1 1
KIAA1539 WILD-TYPE 84 84 78 68 46

Figure S3067.  Get High-res Image Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1539 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S8282.  Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1539 MUTATED 3 1 1 5
KIAA1539 WILD-TYPE 92 73 120 75
'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.71

Table S8283.  Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1539 MUTATED 2 3 2 2 1 0
KIAA1539 WILD-TYPE 50 61 70 102 39 59
'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0765 (Fisher's exact test), Q value = 0.18

Table S8284.  Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1539 MUTATED 9 1 0
KIAA1539 WILD-TYPE 208 74 99
'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 0.72

Table S8285.  Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1539 MUTATED 4 2 3
KIAA1539 WILD-TYPE 117 106 69
'KIAA1539 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0141 (Fisher's exact test), Q value = 0.069

Table S8286.  Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1539 MUTATED 1 1 2 0 5
KIAA1539 WILD-TYPE 87 65 43 55 42

Figure S3068.  Get High-res Image Gene #834: 'KIAA1539 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SEZ6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0776 (Fisher's exact test), Q value = 0.19

Table S8287.  Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SEZ6 MUTATED 3 9 1 0
SEZ6 WILD-TYPE 201 128 46 3
'SEZ6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0365 (Fisher's exact test), Q value = 0.12

Table S8288.  Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SEZ6 MUTATED 1 8 1 2 0
SEZ6 WILD-TYPE 38 88 43 86 80

Figure S3069.  Get High-res Image Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SEZ6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.14

Table S8289.  Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SEZ6 MUTATED 0 5 5 0 1
SEZ6 WILD-TYPE 26 74 68 82 57

Figure S3070.  Get High-res Image Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SEZ6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00392 (Fisher's exact test), Q value = 0.034

Table S8290.  Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SEZ6 MUTATED 1 6 3 1
SEZ6 WILD-TYPE 126 45 68 68

Figure S3071.  Get High-res Image Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SEZ6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S8291.  Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SEZ6 MUTATED 0 3 4 4 1
SEZ6 WILD-TYPE 84 82 81 65 46
'SEZ6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S8292.  Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SEZ6 MUTATED 4 2 0 6
SEZ6 WILD-TYPE 91 72 121 74

Figure S3072.  Get High-res Image Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SEZ6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 0.12

Table S8293.  Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SEZ6 MUTATED 5 1 2 2 3 0
SEZ6 WILD-TYPE 47 63 70 102 37 59

Figure S3073.  Get High-res Image Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SEZ6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.691 (Fisher's exact test), Q value = 0.77

Table S8294.  Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SEZ6 MUTATED 9 2 2
SEZ6 WILD-TYPE 208 73 97
'SEZ6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S8295.  Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SEZ6 MUTATED 7 2 1
SEZ6 WILD-TYPE 114 106 71
'SEZ6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00438 (Fisher's exact test), Q value = 0.036

Table S8296.  Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SEZ6 MUTATED 3 1 0 0 6
SEZ6 WILD-TYPE 85 65 45 55 41

Figure S3074.  Get High-res Image Gene #835: 'SEZ6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0279 (Fisher's exact test), Q value = 0.1

Table S8297.  Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NARG2 MUTATED 2 9 2 0
NARG2 WILD-TYPE 202 128 45 3

Figure S3075.  Get High-res Image Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NARG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00177 (Fisher's exact test), Q value = 0.022

Table S8298.  Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NARG2 MUTATED 2 9 0 0 1
NARG2 WILD-TYPE 37 87 44 88 79

Figure S3076.  Get High-res Image Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NARG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.21

Table S8299.  Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NARG2 MUTATED 1 6 4 0 2
NARG2 WILD-TYPE 25 73 69 82 56
'NARG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 9e-04 (Fisher's exact test), Q value = 0.015

Table S8300.  Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NARG2 MUTATED 2 7 4 0
NARG2 WILD-TYPE 125 44 67 69

Figure S3077.  Get High-res Image Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00113 (Fisher's exact test), Q value = 0.017

Table S8301.  Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NARG2 MUTATED 0 1 9 1 2
NARG2 WILD-TYPE 84 84 76 68 45

Figure S3078.  Get High-res Image Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NARG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.081

Table S8302.  Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NARG2 MUTATED 4 1 1 7
NARG2 WILD-TYPE 91 73 120 73

Figure S3079.  Get High-res Image Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S8303.  Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NARG2 MUTATED 5 2 2 3 1 0
NARG2 WILD-TYPE 47 62 70 101 39 59
'NARG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S8304.  Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NARG2 MUTATED 12 1 0
NARG2 WILD-TYPE 205 74 99

Figure S3080.  Get High-res Image Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.7

Table S8305.  Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NARG2 MUTATED 5 2 3
NARG2 WILD-TYPE 116 106 69
'NARG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S8306.  Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NARG2 MUTATED 3 0 2 0 5
NARG2 WILD-TYPE 85 66 43 55 42

Figure S3081.  Get High-res Image Gene #836: 'NARG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.014

Table S8307.  Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CHD3 MUTATED 5 19 4 0
CHD3 WILD-TYPE 199 118 43 3

Figure S3082.  Get High-res Image Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CHD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S8308.  Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CHD3 MUTATED 3 13 2 4 3
CHD3 WILD-TYPE 36 83 42 84 77
'CHD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00285 (Fisher's exact test), Q value = 0.028

Table S8309.  Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CHD3 MUTATED 0 9 8 0 5
CHD3 WILD-TYPE 26 70 65 82 53

Figure S3083.  Get High-res Image Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CHD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00221 (Fisher's exact test), Q value = 0.024

Table S8310.  Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CHD3 MUTATED 5 9 7 1
CHD3 WILD-TYPE 122 42 64 68

Figure S3084.  Get High-res Image Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0629 (Fisher's exact test), Q value = 0.16

Table S8311.  Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CHD3 MUTATED 3 2 10 5 5
CHD3 WILD-TYPE 81 83 75 64 42
'CHD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00119 (Fisher's exact test), Q value = 0.017

Table S8312.  Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CHD3 MUTATED 12 1 3 9
CHD3 WILD-TYPE 83 73 118 71

Figure S3085.  Get High-res Image Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00096 (Fisher's exact test), Q value = 0.015

Table S8313.  Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CHD3 MUTATED 10 7 2 6 2 0
CHD3 WILD-TYPE 42 57 70 98 38 59

Figure S3086.  Get High-res Image Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CHD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S8314.  Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CHD3 MUTATED 18 5 4
CHD3 WILD-TYPE 199 70 95
'CHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 0.51

Table S8315.  Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CHD3 MUTATED 9 6 8
CHD3 WILD-TYPE 112 102 64
'CHD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.44

Table S8316.  Gene #837: 'CHD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CHD3 MUTATED 6 4 4 2 7
CHD3 WILD-TYPE 82 62 41 53 40
'THSD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.17

Table S8317.  Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
THSD1 MUTATED 6 13 2 0
THSD1 WILD-TYPE 198 124 45 3
'THSD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00467 (Fisher's exact test), Q value = 0.037

Table S8318.  Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
THSD1 MUTATED 0 8 6 1 2
THSD1 WILD-TYPE 39 88 38 87 78

Figure S3087.  Get High-res Image Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THSD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0812 (Fisher's exact test), Q value = 0.19

Table S8319.  Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
THSD1 MUTATED 1 8 2 1 4
THSD1 WILD-TYPE 25 71 71 81 54
'THSD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.078 (Fisher's exact test), Q value = 0.19

Table S8320.  Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
THSD1 MUTATED 3 5 6 2
THSD1 WILD-TYPE 124 46 65 67
'THSD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S8321.  Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
THSD1 MUTATED 2 2 9 4 3
THSD1 WILD-TYPE 82 83 76 65 44
'THSD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0453 (Fisher's exact test), Q value = 0.13

Table S8322.  Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
THSD1 MUTATED 7 3 2 8
THSD1 WILD-TYPE 88 71 119 72

Figure S3088.  Get High-res Image Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'THSD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.018

Table S8323.  Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
THSD1 MUTATED 4 10 5 1 0 2
THSD1 WILD-TYPE 48 54 67 103 40 57

Figure S3089.  Get High-res Image Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'THSD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.064

Table S8324.  Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
THSD1 MUTATED 19 1 2
THSD1 WILD-TYPE 198 74 97

Figure S3090.  Get High-res Image Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'THSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00053 (Fisher's exact test), Q value = 0.011

Table S8325.  Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
THSD1 MUTATED 8 0 9
THSD1 WILD-TYPE 113 108 63

Figure S3091.  Get High-res Image Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'THSD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00705 (Fisher's exact test), Q value = 0.046

Table S8326.  Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
THSD1 MUTATED 3 1 5 1 7
THSD1 WILD-TYPE 85 65 40 54 40

Figure S3092.  Get High-res Image Gene #838: 'THSD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CTNNA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00341 (Fisher's exact test), Q value = 0.032

Table S8327.  Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CTNNA1 MUTATED 2 12 1 0
CTNNA1 WILD-TYPE 202 125 46 3

Figure S3093.  Get High-res Image Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CTNNA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S8328.  Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CTNNA1 MUTATED 2 8 0 0 4
CTNNA1 WILD-TYPE 37 88 44 88 76

Figure S3094.  Get High-res Image Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CTNNA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.68

Table S8329.  Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CTNNA1 MUTATED 2 3 3 2 4
CTNNA1 WILD-TYPE 24 76 70 80 54
'CTNNA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0642 (Fisher's exact test), Q value = 0.17

Table S8330.  Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CTNNA1 MUTATED 3 6 2 3
CTNNA1 WILD-TYPE 124 45 69 66
'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00778 (Fisher's exact test), Q value = 0.049

Table S8331.  Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CTNNA1 MUTATED 1 3 9 0 2
CTNNA1 WILD-TYPE 83 82 76 69 45

Figure S3095.  Get High-res Image Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CTNNA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0314 (Fisher's exact test), Q value = 0.11

Table S8332.  Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CTNNA1 MUTATED 1 2 4 8
CTNNA1 WILD-TYPE 94 72 117 72

Figure S3096.  Get High-res Image Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S8333.  Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CTNNA1 MUTATED 5 3 3 2 2 0
CTNNA1 WILD-TYPE 47 61 69 102 38 59
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.456 (Fisher's exact test), Q value = 0.57

Table S8334.  Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CTNNA1 MUTATED 11 2 2
CTNNA1 WILD-TYPE 206 73 97
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S8335.  Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CTNNA1 MUTATED 7 2 4
CTNNA1 WILD-TYPE 114 106 68
'CTNNA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0624 (Fisher's exact test), Q value = 0.16

Table S8336.  Gene #839: 'CTNNA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CTNNA1 MUTATED 4 1 4 0 4
CTNNA1 WILD-TYPE 84 65 41 55 43
'BANK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.35

Table S8337.  Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BANK1 MUTATED 4 7 0 0
BANK1 WILD-TYPE 200 130 47 3
'BANK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00848 (Fisher's exact test), Q value = 0.052

Table S8338.  Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BANK1 MUTATED 0 6 2 0 0
BANK1 WILD-TYPE 39 90 42 88 80

Figure S3097.  Get High-res Image Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BANK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.755 (Fisher's exact test), Q value = 0.82

Table S8339.  Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BANK1 MUTATED 0 3 3 1 2
BANK1 WILD-TYPE 26 76 70 81 56
'BANK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0661 (Fisher's exact test), Q value = 0.17

Table S8340.  Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BANK1 MUTATED 1 4 2 2
BANK1 WILD-TYPE 126 47 69 67
'BANK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S8341.  Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BANK1 MUTATED 0 2 3 1 3
BANK1 WILD-TYPE 84 83 82 68 44
'BANK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0188 (Fisher's exact test), Q value = 0.081

Table S8342.  Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BANK1 MUTATED 3 1 0 5
BANK1 WILD-TYPE 92 73 121 75

Figure S3098.  Get High-res Image Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BANK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 0.12

Table S8343.  Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BANK1 MUTATED 4 3 0 2 2 0
BANK1 WILD-TYPE 48 61 72 102 38 59

Figure S3099.  Get High-res Image Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BANK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.84 (Fisher's exact test), Q value = 0.89

Table S8344.  Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BANK1 MUTATED 7 1 3
BANK1 WILD-TYPE 210 74 96
'BANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S8345.  Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BANK1 MUTATED 4 1 2
BANK1 WILD-TYPE 117 107 70
'BANK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.44

Table S8346.  Gene #840: 'BANK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BANK1 MUTATED 4 1 0 0 2
BANK1 WILD-TYPE 84 65 45 55 45
'ZNF441 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0113 (Fisher's exact test), Q value = 0.061

Table S8347.  Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF441 MUTATED 1 8 0 0
ZNF441 WILD-TYPE 203 129 47 3

Figure S3100.  Get High-res Image Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF441 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S8348.  Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF441 MUTATED 1 4 2 1 0
ZNF441 WILD-TYPE 38 92 42 87 80
'ZNF441 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S8349.  Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF441 MUTATED 0 2 4 0 3
ZNF441 WILD-TYPE 26 77 69 82 55
'ZNF441 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00164 (Fisher's exact test), Q value = 0.021

Table S8350.  Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF441 MUTATED 2 6 1 0
ZNF441 WILD-TYPE 125 45 70 69

Figure S3101.  Get High-res Image Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF441 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0372 (Fisher's exact test), Q value = 0.12

Table S8351.  Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF441 MUTATED 0 1 6 1 1
ZNF441 WILD-TYPE 84 84 79 68 46

Figure S3102.  Get High-res Image Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF441 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S8352.  Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF441 MUTATED 2 1 1 5
ZNF441 WILD-TYPE 93 73 120 75
'ZNF441 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S8353.  Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF441 MUTATED 4 2 1 1 0 1
ZNF441 WILD-TYPE 48 62 71 103 40 58
'ZNF441 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S8354.  Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF441 MUTATED 8 0 1
ZNF441 WILD-TYPE 209 75 98
'ZNF441 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S8355.  Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF441 MUTATED 4 1 1
ZNF441 WILD-TYPE 117 107 71
'ZNF441 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S8356.  Gene #841: 'ZNF441 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF441 MUTATED 2 0 1 0 3
ZNF441 WILD-TYPE 86 66 44 55 44
'TBC1D8B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S8357.  Gene #842: 'TBC1D8B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TBC1D8B MUTATED 3 5 1 0
TBC1D8B WILD-TYPE 201 132 46 3
'TBC1D8B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.56

Table S8358.  Gene #842: 'TBC1D8B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TBC1D8B MUTATED 0 2 3 2 2
TBC1D8B WILD-TYPE 39 94 41 86 78
'TBC1D8B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S8359.  Gene #842: 'TBC1D8B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TBC1D8B MUTATED 0 5 0 1 2
TBC1D8B WILD-TYPE 26 74 73 81 56
'TBC1D8B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 0.74

Table S8360.  Gene #842: 'TBC1D8B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TBC1D8B MUTATED 2 1 3 2
TBC1D8B WILD-TYPE 125 50 68 67
'TBC1D8B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 0.84

Table S8361.  Gene #842: 'TBC1D8B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TBC1D8B MUTATED 2 3 3 1 0
TBC1D8B WILD-TYPE 82 82 82 68 47
'TBC1D8B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 0.84

Table S8362.  Gene #842: 'TBC1D8B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TBC1D8B MUTATED 3 1 4 1
TBC1D8B WILD-TYPE 92 73 117 79
'TBC1D8B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.6

Table S8363.  Gene #842: 'TBC1D8B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TBC1D8B MUTATED 0 3 2 1 1 2
TBC1D8B WILD-TYPE 52 61 70 103 39 57
'TBC1D8B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8364.  Gene #842: 'TBC1D8B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TBC1D8B MUTATED 5 2 2
TBC1D8B WILD-TYPE 212 73 97
'TBC1D8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.51

Table S8365.  Gene #842: 'TBC1D8B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TBC1D8B MUTATED 3 2 4
TBC1D8B WILD-TYPE 118 106 68
'TBC1D8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.17

Table S8366.  Gene #842: 'TBC1D8B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TBC1D8B MUTATED 5 0 3 1 0
TBC1D8B WILD-TYPE 83 66 42 54 47
'CD3EAP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S8367.  Gene #843: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CD3EAP MUTATED 2 7 1 0
CD3EAP WILD-TYPE 202 130 46 3
'CD3EAP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.61

Table S8368.  Gene #843: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CD3EAP MUTATED 1 4 0 1 1
CD3EAP WILD-TYPE 38 92 44 87 79
'CD3EAP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 0.61

Table S8369.  Gene #843: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CD3EAP MUTATED 1 3 1 1 3
CD3EAP WILD-TYPE 25 76 72 81 55
'CD3EAP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S8370.  Gene #843: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CD3EAP MUTATED 3 4 1 1
CD3EAP WILD-TYPE 124 47 70 68
'CD3EAP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.38

Table S8371.  Gene #843: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CD3EAP MUTATED 0 2 4 1 2
CD3EAP WILD-TYPE 84 83 81 68 45
'CD3EAP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S8372.  Gene #843: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CD3EAP MUTATED 4 1 2 2
CD3EAP WILD-TYPE 91 73 119 78
'CD3EAP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S8373.  Gene #843: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CD3EAP MUTATED 3 4 1 1 0 1
CD3EAP WILD-TYPE 49 60 71 103 40 58
'CD3EAP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.5

Table S8374.  Gene #843: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CD3EAP MUTATED 8 1 1
CD3EAP WILD-TYPE 209 74 98
'CD3EAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 0.2

Table S8375.  Gene #843: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CD3EAP MUTATED 5 0 2
CD3EAP WILD-TYPE 116 108 70
'CD3EAP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S8376.  Gene #843: 'CD3EAP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CD3EAP MUTATED 1 0 2 1 3
CD3EAP WILD-TYPE 87 66 43 54 44
'EFNA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 0.1

Table S8377.  Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EFNA4 MUTATED 0 5 0 0
EFNA4 WILD-TYPE 204 132 47 3

Figure S3103.  Get High-res Image Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EFNA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.084

Table S8378.  Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EFNA4 MUTATED 0 5 0 0 0
EFNA4 WILD-TYPE 39 91 44 88 80

Figure S3104.  Get High-res Image Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EFNA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S8379.  Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EFNA4 MUTATED 0 0 2 0 2
EFNA4 WILD-TYPE 26 79 71 82 56
'EFNA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.011

Table S8380.  Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EFNA4 MUTATED 0 4 0 0
EFNA4 WILD-TYPE 127 47 71 69

Figure S3105.  Get High-res Image Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EFNA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S8381.  Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EFNA4 MUTATED 0 1 3 0 1
EFNA4 WILD-TYPE 84 84 82 69 46
'EFNA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0476 (Fisher's exact test), Q value = 0.14

Table S8382.  Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EFNA4 MUTATED 2 0 0 3
EFNA4 WILD-TYPE 93 74 121 77

Figure S3106.  Get High-res Image Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EFNA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S8383.  Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EFNA4 MUTATED 2 1 1 0 1 0
EFNA4 WILD-TYPE 50 63 71 104 39 59
'EFNA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 0.88

Table S8384.  Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EFNA4 MUTATED 4 0 1
EFNA4 WILD-TYPE 213 75 98
'EFNA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.89

Table S8385.  Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EFNA4 MUTATED 3 1 1
EFNA4 WILD-TYPE 118 107 71
'EFNA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.17

Table S8386.  Gene #844: 'EFNA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EFNA4 MUTATED 1 0 1 0 3
EFNA4 WILD-TYPE 87 66 44 55 44
'COL20A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S8387.  Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
COL20A1 MUTATED 6 12 2 0
COL20A1 WILD-TYPE 198 125 45 3
'COL20A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0692 (Fisher's exact test), Q value = 0.17

Table S8388.  Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
COL20A1 MUTATED 2 11 1 2 3
COL20A1 WILD-TYPE 37 85 43 86 77
'COL20A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S8389.  Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
COL20A1 MUTATED 1 5 3 1 5
COL20A1 WILD-TYPE 25 74 70 81 53
'COL20A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0181 (Fisher's exact test), Q value = 0.079

Table S8390.  Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
COL20A1 MUTATED 4 7 3 1
COL20A1 WILD-TYPE 123 44 68 68

Figure S3107.  Get High-res Image Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'COL20A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00027 (Fisher's exact test), Q value = 0.0073

Table S8391.  Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
COL20A1 MUTATED 1 3 12 0 3
COL20A1 WILD-TYPE 83 82 73 69 44

Figure S3108.  Get High-res Image Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'COL20A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0536 (Fisher's exact test), Q value = 0.15

Table S8392.  Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
COL20A1 MUTATED 3 4 3 9
COL20A1 WILD-TYPE 92 70 118 71
'COL20A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.452 (Fisher's exact test), Q value = 0.57

Table S8393.  Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
COL20A1 MUTATED 5 5 3 3 1 3
COL20A1 WILD-TYPE 47 59 69 101 39 56
'COL20A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.58

Table S8394.  Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
COL20A1 MUTATED 14 3 3
COL20A1 WILD-TYPE 203 72 96
'COL20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.74

Table S8395.  Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
COL20A1 MUTATED 9 5 5
COL20A1 WILD-TYPE 112 103 67
'COL20A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.55

Table S8396.  Gene #845: 'COL20A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
COL20A1 MUTATED 4 3 3 3 6
COL20A1 WILD-TYPE 84 63 42 52 41
'SEC16B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S8397.  Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SEC16B MUTATED 1 5 1 0
SEC16B WILD-TYPE 203 132 46 3
'SEC16B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00627 (Fisher's exact test), Q value = 0.044

Table S8398.  Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SEC16B MUTATED 0 6 0 0 0
SEC16B WILD-TYPE 39 90 44 88 80

Figure S3109.  Get High-res Image Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SEC16B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.84

Table S8399.  Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SEC16B MUTATED 0 2 3 1 1
SEC16B WILD-TYPE 26 77 70 81 57
'SEC16B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S8400.  Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SEC16B MUTATED 1 3 2 1
SEC16B WILD-TYPE 126 48 69 68
'SEC16B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S8401.  Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SEC16B MUTATED 0 2 3 0 2
SEC16B WILD-TYPE 84 83 82 69 45
'SEC16B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00205 (Fisher's exact test), Q value = 0.023

Table S8402.  Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SEC16B MUTATED 0 2 0 5
SEC16B WILD-TYPE 95 72 121 75

Figure S3110.  Get High-res Image Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SEC16B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.49

Table S8403.  Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SEC16B MUTATED 3 1 1 2 0 0
SEC16B WILD-TYPE 49 63 71 102 40 59
'SEC16B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.765 (Fisher's exact test), Q value = 0.83

Table S8404.  Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SEC16B MUTATED 4 2 1
SEC16B WILD-TYPE 213 73 98
'SEC16B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S8405.  Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SEC16B MUTATED 1 2 1
SEC16B WILD-TYPE 120 106 71
'SEC16B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.91

Table S8406.  Gene #846: 'SEC16B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SEC16B MUTATED 1 1 1 0 1
SEC16B WILD-TYPE 87 65 44 55 46
'SIX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.067

Table S8407.  Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SIX3 MUTATED 1 8 1 0
SIX3 WILD-TYPE 203 129 46 3

Figure S3111.  Get High-res Image Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SIX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.11

Table S8408.  Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SIX3 MUTATED 0 6 0 1 0
SIX3 WILD-TYPE 39 90 44 87 80

Figure S3112.  Get High-res Image Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SIX3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 0.92

Table S8409.  Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SIX3 MUTATED 0 2 2 1 2
SIX3 WILD-TYPE 26 77 71 81 56
'SIX3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0517 (Fisher's exact test), Q value = 0.15

Table S8410.  Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SIX3 MUTATED 1 4 1 1
SIX3 WILD-TYPE 126 47 70 68
'SIX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.78

Table S8411.  Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SIX3 MUTATED 1 3 3 1 2
SIX3 WILD-TYPE 83 82 82 68 45
'SIX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0146 (Fisher's exact test), Q value = 0.07

Table S8412.  Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SIX3 MUTATED 4 1 0 5
SIX3 WILD-TYPE 91 73 121 75

Figure S3113.  Get High-res Image Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SIX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0522 (Fisher's exact test), Q value = 0.15

Table S8413.  Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SIX3 MUTATED 4 3 0 2 1 0
SIX3 WILD-TYPE 48 61 72 102 39 59
'SIX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.82

Table S8414.  Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SIX3 MUTATED 7 1 2
SIX3 WILD-TYPE 210 74 97
'SIX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.494 (Fisher's exact test), Q value = 0.6

Table S8415.  Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SIX3 MUTATED 4 1 2
SIX3 WILD-TYPE 117 107 70
'SIX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S8416.  Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SIX3 MUTATED 2 0 1 0 4
SIX3 WILD-TYPE 86 66 44 55 43

Figure S3114.  Get High-res Image Gene #847: 'SIX3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC7A13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00036 (Fisher's exact test), Q value = 0.0086

Table S8417.  Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC7A13 MUTATED 0 10 1 0
SLC7A13 WILD-TYPE 204 127 46 3

Figure S3115.  Get High-res Image Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC7A13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00784 (Fisher's exact test), Q value = 0.049

Table S8418.  Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC7A13 MUTATED 0 6 2 0 0
SLC7A13 WILD-TYPE 39 90 42 88 80

Figure S3116.  Get High-res Image Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC7A13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 0.2

Table S8419.  Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC7A13 MUTATED 0 1 4 0 3
SLC7A13 WILD-TYPE 26 78 69 82 55
'SLC7A13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0038 (Fisher's exact test), Q value = 0.033

Table S8420.  Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC7A13 MUTATED 3 5 0 0
SLC7A13 WILD-TYPE 124 46 71 69

Figure S3117.  Get High-res Image Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC7A13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0917 (Fisher's exact test), Q value = 0.21

Table S8421.  Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC7A13 MUTATED 0 1 5 3 2
SLC7A13 WILD-TYPE 84 84 80 66 45
'SLC7A13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0308 (Fisher's exact test), Q value = 0.11

Table S8422.  Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC7A13 MUTATED 5 2 0 4
SLC7A13 WILD-TYPE 90 72 121 76

Figure S3118.  Get High-res Image Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00761 (Fisher's exact test), Q value = 0.049

Table S8423.  Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC7A13 MUTATED 3 6 1 1 0 0
SLC7A13 WILD-TYPE 49 58 71 103 40 59

Figure S3119.  Get High-res Image Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0347 (Fisher's exact test), Q value = 0.12

Table S8424.  Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC7A13 MUTATED 10 1 0
SLC7A13 WILD-TYPE 207 74 99

Figure S3120.  Get High-res Image Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.6

Table S8425.  Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC7A13 MUTATED 4 1 2
SLC7A13 WILD-TYPE 117 107 70
'SLC7A13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S8426.  Gene #848: 'SLC7A13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC7A13 MUTATED 1 1 2 0 3
SLC7A13 WILD-TYPE 87 65 43 55 44
'EMILIN3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00173 (Fisher's exact test), Q value = 0.021

Table S8427.  Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EMILIN3 MUTATED 2 10 1 1
EMILIN3 WILD-TYPE 202 127 46 2

Figure S3121.  Get High-res Image Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EMILIN3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.38

Table S8428.  Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EMILIN3 MUTATED 1 7 1 1 2
EMILIN3 WILD-TYPE 38 89 43 87 78
'EMILIN3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.29

Table S8429.  Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EMILIN3 MUTATED 2 2 6 1 2
EMILIN3 WILD-TYPE 24 77 67 81 56
'EMILIN3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S8430.  Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EMILIN3 MUTATED 5 5 1 2
EMILIN3 WILD-TYPE 122 46 70 67
'EMILIN3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.11

Table S8431.  Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EMILIN3 MUTATED 0 4 5 0 2
EMILIN3 WILD-TYPE 84 81 80 69 45

Figure S3122.  Get High-res Image Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EMILIN3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S8432.  Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EMILIN3 MUTATED 1 3 2 5
EMILIN3 WILD-TYPE 94 71 119 75
'EMILIN3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S8433.  Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EMILIN3 MUTATED 2 6 3 2 1 0
EMILIN3 WILD-TYPE 50 58 69 102 39 59
'EMILIN3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S8434.  Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EMILIN3 MUTATED 10 2 2
EMILIN3 WILD-TYPE 207 73 97
'EMILIN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.35

Table S8435.  Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EMILIN3 MUTATED 4 2 5
EMILIN3 WILD-TYPE 117 106 67
'EMILIN3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S8436.  Gene #849: 'EMILIN3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EMILIN3 MUTATED 4 2 4 0 1
EMILIN3 WILD-TYPE 84 64 41 55 46
'EPB41L5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00228 (Fisher's exact test), Q value = 0.025

Table S8437.  Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EPB41L5 MUTATED 0 8 2 0
EPB41L5 WILD-TYPE 204 129 45 3

Figure S3123.  Get High-res Image Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPB41L5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.095

Table S8438.  Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EPB41L5 MUTATED 2 5 1 0 0
EPB41L5 WILD-TYPE 37 91 43 88 80

Figure S3124.  Get High-res Image Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPB41L5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S8439.  Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EPB41L5 MUTATED 1 4 2 0 2
EPB41L5 WILD-TYPE 25 75 71 82 56
'EPB41L5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00078 (Fisher's exact test), Q value = 0.013

Table S8440.  Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EPB41L5 MUTATED 1 6 2 0
EPB41L5 WILD-TYPE 126 45 69 69

Figure S3125.  Get High-res Image Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPB41L5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.089

Table S8441.  Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EPB41L5 MUTATED 1 0 6 2 0
EPB41L5 WILD-TYPE 83 85 79 67 47

Figure S3126.  Get High-res Image Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPB41L5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.12

Table S8442.  Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EPB41L5 MUTATED 3 0 1 5
EPB41L5 WILD-TYPE 92 74 120 75

Figure S3127.  Get High-res Image Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S8443.  Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EPB41L5 MUTATED 3 2 2 1 1 1
EPB41L5 WILD-TYPE 49 62 70 103 39 58
'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0898 (Fisher's exact test), Q value = 0.2

Table S8444.  Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EPB41L5 MUTATED 9 0 1
EPB41L5 WILD-TYPE 208 75 98
'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 0.94

Table S8445.  Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EPB41L5 MUTATED 4 2 2
EPB41L5 WILD-TYPE 117 106 70
'EPB41L5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.13

Table S8446.  Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EPB41L5 MUTATED 3 0 1 0 4
EPB41L5 WILD-TYPE 85 66 44 55 43

Figure S3128.  Get High-res Image Gene #850: 'EPB41L5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UTY MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S8447.  Gene #851: 'UTY MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UTY MUTATED 0 3 0 0
UTY WILD-TYPE 204 134 47 3
'UTY MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 0.18

Table S8448.  Gene #851: 'UTY MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UTY MUTATED 0 3 0 0 0
UTY WILD-TYPE 26 76 73 82 58
'UTY MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0579 (Fisher's exact test), Q value = 0.16

Table S8449.  Gene #851: 'UTY MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UTY MUTATED 0 2 1 0
UTY WILD-TYPE 127 49 70 69
'UTY MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8450.  Gene #851: 'UTY MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UTY MUTATED 0 1 1 1 0 0
UTY WILD-TYPE 52 63 71 103 40 59
'UTY MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.68

Table S8451.  Gene #851: 'UTY MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UTY MUTATED 3 0 0
UTY WILD-TYPE 214 75 99
'CCT6A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0052 (Fisher's exact test), Q value = 0.039

Table S8452.  Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCT6A MUTATED 0 7 1 0
CCT6A WILD-TYPE 204 130 46 3

Figure S3129.  Get High-res Image Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCT6A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.063

Table S8453.  Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCT6A MUTATED 0 6 1 0 0
CCT6A WILD-TYPE 39 90 43 88 80

Figure S3130.  Get High-res Image Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCT6A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.94 (Fisher's exact test), Q value = 0.97

Table S8454.  Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCT6A MUTATED 0 2 2 1 1
CCT6A WILD-TYPE 26 77 71 81 57
'CCT6A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00692 (Fisher's exact test), Q value = 0.046

Table S8455.  Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCT6A MUTATED 0 4 1 1
CCT6A WILD-TYPE 127 47 70 68

Figure S3131.  Get High-res Image Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCT6A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.075

Table S8456.  Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCT6A MUTATED 0 1 5 0 0
CCT6A WILD-TYPE 84 84 80 69 47

Figure S3132.  Get High-res Image Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCT6A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0941 (Fisher's exact test), Q value = 0.21

Table S8457.  Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCT6A MUTATED 1 2 0 3
CCT6A WILD-TYPE 94 72 121 77
'CCT6A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 0.9

Table S8458.  Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCT6A MUTATED 1 2 2 2 1 0
CCT6A WILD-TYPE 51 62 70 102 39 59
'CCT6A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.28

Table S8459.  Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCT6A MUTATED 5 3 0
CCT6A WILD-TYPE 212 72 99
'CCT6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S8460.  Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCT6A MUTATED 2 1 4
CCT6A WILD-TYPE 119 107 68
'CCT6A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 0.76

Table S8461.  Gene #852: 'CCT6A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCT6A MUTATED 2 2 1 0 2
CCT6A WILD-TYPE 86 64 44 55 45
'DGAT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00331 (Fisher's exact test), Q value = 0.031

Table S8462.  Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DGAT1 MUTATED 0 8 1 0
DGAT1 WILD-TYPE 204 129 46 3

Figure S3133.  Get High-res Image Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DGAT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S8463.  Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DGAT1 MUTATED 0 6 1 1 1
DGAT1 WILD-TYPE 39 90 43 87 79
'DGAT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.4

Table S8464.  Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DGAT1 MUTATED 0 3 1 0 0
DGAT1 WILD-TYPE 26 76 72 82 58
'DGAT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.47

Table S8465.  Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DGAT1 MUTATED 1 1 2 0
DGAT1 WILD-TYPE 126 50 69 69
'DGAT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.552 (Fisher's exact test), Q value = 0.65

Table S8466.  Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DGAT1 MUTATED 1 1 2 3 2
DGAT1 WILD-TYPE 83 84 83 66 45
'DGAT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0055 (Fisher's exact test), Q value = 0.041

Table S8467.  Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DGAT1 MUTATED 5 0 0 4
DGAT1 WILD-TYPE 90 74 121 76

Figure S3134.  Get High-res Image Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DGAT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S8468.  Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DGAT1 MUTATED 4 2 1 1 1 0
DGAT1 WILD-TYPE 48 62 71 103 39 59
'DGAT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S8469.  Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DGAT1 MUTATED 7 0 2
DGAT1 WILD-TYPE 210 75 97
'DGAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.58

Table S8470.  Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DGAT1 MUTATED 5 2 1
DGAT1 WILD-TYPE 116 106 71
'DGAT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0412 (Fisher's exact test), Q value = 0.13

Table S8471.  Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DGAT1 MUTATED 3 0 1 0 4
DGAT1 WILD-TYPE 85 66 44 55 43

Figure S3135.  Get High-res Image Gene #853: 'DGAT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VWA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0118 (Fisher's exact test), Q value = 0.062

Table S8472.  Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
VWA1 MUTATED 0 6 1 0
VWA1 WILD-TYPE 204 131 46 3

Figure S3136.  Get High-res Image Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VWA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0407 (Fisher's exact test), Q value = 0.13

Table S8473.  Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
VWA1 MUTATED 0 4 2 0 0
VWA1 WILD-TYPE 39 92 42 88 80

Figure S3137.  Get High-res Image Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'VWA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.53

Table S8474.  Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
VWA1 MUTATED 0 1 2 0 2
VWA1 WILD-TYPE 26 78 71 82 56
'VWA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0517 (Fisher's exact test), Q value = 0.15

Table S8475.  Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
VWA1 MUTATED 2 3 0 0
VWA1 WILD-TYPE 125 48 71 69
'VWA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0306 (Fisher's exact test), Q value = 0.11

Table S8476.  Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
VWA1 MUTATED 0 1 5 0 1
VWA1 WILD-TYPE 84 84 80 69 46

Figure S3138.  Get High-res Image Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'VWA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0202 (Fisher's exact test), Q value = 0.085

Table S8477.  Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
VWA1 MUTATED 1 0 1 5
VWA1 WILD-TYPE 94 74 120 75

Figure S3139.  Get High-res Image Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'VWA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.086

Table S8478.  Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
VWA1 MUTATED 2 4 1 0 0 0
VWA1 WILD-TYPE 50 60 71 104 40 59

Figure S3140.  Get High-res Image Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VWA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 0.18

Table S8479.  Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
VWA1 MUTATED 7 0 0
VWA1 WILD-TYPE 210 75 99
'VWA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S8480.  Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
VWA1 MUTATED 3 0 3
VWA1 WILD-TYPE 118 108 69
'VWA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0424 (Fisher's exact test), Q value = 0.13

Table S8481.  Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
VWA1 MUTATED 1 0 2 0 3
VWA1 WILD-TYPE 87 66 43 55 44

Figure S3141.  Get High-res Image Gene #854: 'VWA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00709 (Fisher's exact test), Q value = 0.047

Table S8482.  Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABCA5 MUTATED 5 15 1 0
ABCA5 WILD-TYPE 199 122 46 3

Figure S3142.  Get High-res Image Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCA5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0019 (Fisher's exact test), Q value = 0.022

Table S8483.  Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABCA5 MUTATED 2 12 0 1 2
ABCA5 WILD-TYPE 37 84 44 87 78

Figure S3143.  Get High-res Image Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCA5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S8484.  Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABCA5 MUTATED 3 5 6 2 3
ABCA5 WILD-TYPE 23 74 67 80 55
'ABCA5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S8485.  Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABCA5 MUTATED 7 11 0 1
ABCA5 WILD-TYPE 120 40 71 68

Figure S3144.  Get High-res Image Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.11

Table S8486.  Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABCA5 MUTATED 1 2 9 3 4
ABCA5 WILD-TYPE 83 83 76 66 43

Figure S3145.  Get High-res Image Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ABCA5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00759 (Fisher's exact test), Q value = 0.049

Table S8487.  Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABCA5 MUTATED 5 2 2 10
ABCA5 WILD-TYPE 90 72 119 70

Figure S3146.  Get High-res Image Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00112 (Fisher's exact test), Q value = 0.017

Table S8488.  Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABCA5 MUTATED 9 5 3 2 2 0
ABCA5 WILD-TYPE 43 59 69 102 38 59

Figure S3147.  Get High-res Image Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.074

Table S8489.  Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABCA5 MUTATED 18 1 2
ABCA5 WILD-TYPE 199 74 97

Figure S3148.  Get High-res Image Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S8490.  Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABCA5 MUTATED 9 2 2
ABCA5 WILD-TYPE 112 106 70
'ABCA5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.41

Table S8491.  Gene #855: 'ABCA5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABCA5 MUTATED 4 2 1 1 5
ABCA5 WILD-TYPE 84 64 44 54 42
'LONRF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 0.1

Table S8492.  Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LONRF1 MUTATED 0 5 0 0
LONRF1 WILD-TYPE 204 132 47 3

Figure S3149.  Get High-res Image Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LONRF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S8493.  Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LONRF1 MUTATED 0 5 1 0 0
LONRF1 WILD-TYPE 39 91 43 88 80

Figure S3150.  Get High-res Image Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LONRF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S8494.  Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LONRF1 MUTATED 0 2 2 0 1
LONRF1 WILD-TYPE 26 77 71 82 57
'LONRF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S8495.  Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LONRF1 MUTATED 1 2 2 0
LONRF1 WILD-TYPE 126 49 69 69
'LONRF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0103 (Fisher's exact test), Q value = 0.057

Table S8496.  Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LONRF1 MUTATED 0 0 4 0 2
LONRF1 WILD-TYPE 84 85 81 69 45

Figure S3151.  Get High-res Image Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LONRF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00301 (Fisher's exact test), Q value = 0.029

Table S8497.  Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LONRF1 MUTATED 1 0 0 5
LONRF1 WILD-TYPE 94 74 121 75

Figure S3152.  Get High-res Image Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LONRF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00227 (Fisher's exact test), Q value = 0.025

Table S8498.  Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LONRF1 MUTATED 4 2 0 0 0 0
LONRF1 WILD-TYPE 48 62 72 104 40 59

Figure S3153.  Get High-res Image Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LONRF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S8499.  Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LONRF1 MUTATED 6 0 0
LONRF1 WILD-TYPE 211 75 99
'LONRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S8500.  Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LONRF1 MUTATED 3 1 2
LONRF1 WILD-TYPE 118 107 70
'LONRF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.043 (Fisher's exact test), Q value = 0.13

Table S8501.  Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LONRF1 MUTATED 1 0 2 0 3
LONRF1 WILD-TYPE 87 66 43 55 44

Figure S3154.  Get High-res Image Gene #856: 'LONRF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.16

Table S8502.  Gene #857: 'PHF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PHF10 MUTATED 0 4 0 0
PHF10 WILD-TYPE 204 133 47 3
'PHF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 0.76

Table S8503.  Gene #857: 'PHF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PHF10 MUTATED 0 1 1 0 1
PHF10 WILD-TYPE 39 95 43 88 79
'PHF10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S8504.  Gene #857: 'PHF10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PHF10 MUTATED 0 1 2 0 0
PHF10 WILD-TYPE 26 78 71 82 58
'PHF10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00414 (Fisher's exact test), Q value = 0.035

Table S8505.  Gene #857: 'PHF10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PHF10 MUTATED 0 3 0 0
PHF10 WILD-TYPE 127 48 71 69

Figure S3155.  Get High-res Image Gene #857: 'PHF10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S8506.  Gene #857: 'PHF10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PHF10 MUTATED 0 0 2 1 1
PHF10 WILD-TYPE 84 85 83 68 46
'PHF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.775 (Fisher's exact test), Q value = 0.84

Table S8507.  Gene #857: 'PHF10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PHF10 MUTATED 2 0 1 1
PHF10 WILD-TYPE 93 74 120 79
'PHF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 0.82

Table S8508.  Gene #857: 'PHF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PHF10 MUTATED 0 1 2 1 0 0
PHF10 WILD-TYPE 52 63 70 103 40 59
'PHF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.51

Table S8509.  Gene #857: 'PHF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PHF10 MUTATED 4 0 0
PHF10 WILD-TYPE 213 75 99
'CYP4B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S8510.  Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CYP4B1 MUTATED 3 6 1 0
CYP4B1 WILD-TYPE 201 131 46 3
'CYP4B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S8511.  Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CYP4B1 MUTATED 1 6 0 1 1
CYP4B1 WILD-TYPE 38 90 44 87 79
'CYP4B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S8512.  Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CYP4B1 MUTATED 0 2 2 3 1
CYP4B1 WILD-TYPE 26 77 71 79 57
'CYP4B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0089 (Fisher's exact test), Q value = 0.053

Table S8513.  Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CYP4B1 MUTATED 0 3 1 4
CYP4B1 WILD-TYPE 127 48 70 65

Figure S3156.  Get High-res Image Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CYP4B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 0.91

Table S8514.  Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CYP4B1 MUTATED 2 2 4 1 1
CYP4B1 WILD-TYPE 82 83 81 68 46
'CYP4B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 0.37

Table S8515.  Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CYP4B1 MUTATED 2 3 1 4
CYP4B1 WILD-TYPE 93 71 120 76
'CYP4B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.2

Table S8516.  Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CYP4B1 MUTATED 4 1 2 1 2 0
CYP4B1 WILD-TYPE 48 63 70 103 38 59
'CYP4B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.46

Table S8517.  Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CYP4B1 MUTATED 7 0 3
CYP4B1 WILD-TYPE 210 75 96
'CYP4B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S8518.  Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CYP4B1 MUTATED 4 1 1
CYP4B1 WILD-TYPE 117 107 71
'CYP4B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.45

Table S8519.  Gene #858: 'CYP4B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CYP4B1 MUTATED 4 0 0 1 1
CYP4B1 WILD-TYPE 84 66 45 54 46
'EXO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00523 (Fisher's exact test), Q value = 0.04

Table S8520.  Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EXO1 MUTATED 3 13 1 0
EXO1 WILD-TYPE 201 124 46 3

Figure S3157.  Get High-res Image Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EXO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S8521.  Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EXO1 MUTATED 1 10 3 0 0
EXO1 WILD-TYPE 38 86 41 88 80

Figure S3158.  Get High-res Image Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EXO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0853 (Fisher's exact test), Q value = 0.2

Table S8522.  Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EXO1 MUTATED 0 8 4 1 2
EXO1 WILD-TYPE 26 71 69 81 56
'EXO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S8523.  Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EXO1 MUTATED 1 10 3 1
EXO1 WILD-TYPE 126 41 68 68

Figure S3159.  Get High-res Image Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0111 (Fisher's exact test), Q value = 0.06

Table S8524.  Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EXO1 MUTATED 0 3 8 1 3
EXO1 WILD-TYPE 84 82 77 68 44

Figure S3160.  Get High-res Image Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EXO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S8525.  Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EXO1 MUTATED 4 2 1 8
EXO1 WILD-TYPE 91 72 120 72

Figure S3161.  Get High-res Image Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.1

Table S8526.  Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EXO1 MUTATED 2 7 5 2 1 0
EXO1 WILD-TYPE 50 57 67 102 39 59

Figure S3162.  Get High-res Image Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00599 (Fisher's exact test), Q value = 0.043

Table S8527.  Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EXO1 MUTATED 15 2 0
EXO1 WILD-TYPE 202 73 99

Figure S3163.  Get High-res Image Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EXO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S8528.  Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EXO1 MUTATED 4 2 6
EXO1 WILD-TYPE 117 106 66
'EXO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0605 (Fisher's exact test), Q value = 0.16

Table S8529.  Gene #859: 'EXO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EXO1 MUTATED 2 2 4 0 4
EXO1 WILD-TYPE 86 64 41 55 43
'THYN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.71

Table S8530.  Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
THYN1 MUTATED 3 4 1 0
THYN1 WILD-TYPE 201 133 46 3
'THYN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0257 (Fisher's exact test), Q value = 0.098

Table S8531.  Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
THYN1 MUTATED 2 4 0 0 0
THYN1 WILD-TYPE 37 92 44 88 80

Figure S3164.  Get High-res Image Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THYN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S8532.  Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
THYN1 MUTATED 2 2 1 0 2
THYN1 WILD-TYPE 24 77 72 82 56
'THYN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.374 (Fisher's exact test), Q value = 0.5

Table S8533.  Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
THYN1 MUTATED 5 1 1 0
THYN1 WILD-TYPE 122 50 70 69
'THYN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S8534.  Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
THYN1 MUTATED 2 0 4 1 1
THYN1 WILD-TYPE 82 85 81 68 46
'THYN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.49

Table S8535.  Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
THYN1 MUTATED 3 0 2 3
THYN1 WILD-TYPE 92 74 119 77
'THYN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 0.64

Table S8536.  Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
THYN1 MUTATED 1 3 1 1 0 2
THYN1 WILD-TYPE 51 61 71 103 40 57
'THYN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S8537.  Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
THYN1 MUTATED 6 0 2
THYN1 WILD-TYPE 211 75 97
'THYN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S8538.  Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
THYN1 MUTATED 2 1 2
THYN1 WILD-TYPE 119 107 70
'THYN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.802 (Fisher's exact test), Q value = 0.86

Table S8539.  Gene #860: 'THYN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
THYN1 MUTATED 2 0 1 1 1
THYN1 WILD-TYPE 86 66 44 54 46
'FOXQ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S8540.  Gene #861: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FOXQ1 MUTATED 0 3 0 0
FOXQ1 WILD-TYPE 204 134 47 3
'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.45

Table S8541.  Gene #861: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FOXQ1 MUTATED 0 0 2 1 0
FOXQ1 WILD-TYPE 84 85 83 68 47
'FOXQ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S8542.  Gene #861: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FOXQ1 MUTATED 1 0 0 2
FOXQ1 WILD-TYPE 94 74 121 78
'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S8543.  Gene #861: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FOXQ1 MUTATED 0 2 1 0 0 0
FOXQ1 WILD-TYPE 52 62 71 104 40 59
'FOXQ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8544.  Gene #861: 'FOXQ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FOXQ1 MUTATED 2 0 1
FOXQ1 WILD-TYPE 215 75 98
'HIVEP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S8545.  Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HIVEP1 MUTATED 6 16 2 0
HIVEP1 WILD-TYPE 198 121 45 3

Figure S3165.  Get High-res Image Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIVEP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00096 (Fisher's exact test), Q value = 0.015

Table S8546.  Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HIVEP1 MUTATED 3 13 4 1 1
HIVEP1 WILD-TYPE 36 83 40 87 79

Figure S3166.  Get High-res Image Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0293 (Fisher's exact test), Q value = 0.11

Table S8547.  Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HIVEP1 MUTATED 2 10 3 1 5
HIVEP1 WILD-TYPE 24 69 70 81 53

Figure S3167.  Get High-res Image Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'HIVEP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.091

Table S8548.  Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HIVEP1 MUTATED 6 7 7 1
HIVEP1 WILD-TYPE 121 44 64 68

Figure S3168.  Get High-res Image Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00495 (Fisher's exact test), Q value = 0.038

Table S8549.  Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HIVEP1 MUTATED 1 2 12 5 3
HIVEP1 WILD-TYPE 83 83 73 64 44

Figure S3169.  Get High-res Image Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00036 (Fisher's exact test), Q value = 0.0086

Table S8550.  Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HIVEP1 MUTATED 8 1 2 12
HIVEP1 WILD-TYPE 87 73 119 68

Figure S3170.  Get High-res Image Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0068

Table S8551.  Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HIVEP1 MUTATED 8 7 7 2 0 0
HIVEP1 WILD-TYPE 44 57 65 102 40 59

Figure S3171.  Get High-res Image Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S8552.  Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HIVEP1 MUTATED 23 1 0
HIVEP1 WILD-TYPE 194 74 99

Figure S3172.  Get High-res Image Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.11

Table S8553.  Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HIVEP1 MUTATED 10 2 7
HIVEP1 WILD-TYPE 111 106 65

Figure S3173.  Get High-res Image Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HIVEP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00062 (Fisher's exact test), Q value = 0.012

Table S8554.  Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HIVEP1 MUTATED 8 0 4 0 7
HIVEP1 WILD-TYPE 80 66 41 55 40

Figure S3174.  Get High-res Image Gene #862: 'HIVEP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF687 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00012 (Fisher's exact test), Q value = 0.0044

Table S8555.  Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF687 MUTATED 0 11 0 0
ZNF687 WILD-TYPE 204 126 47 3

Figure S3175.  Get High-res Image Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF687 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.15

Table S8556.  Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF687 MUTATED 2 5 0 0 1
ZNF687 WILD-TYPE 37 91 44 88 79
'ZNF687 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.656 (Fisher's exact test), Q value = 0.74

Table S8557.  Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF687 MUTATED 1 3 2 1 3
ZNF687 WILD-TYPE 25 76 71 81 55
'ZNF687 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S8558.  Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF687 MUTATED 2 4 3 1
ZNF687 WILD-TYPE 125 47 68 68
'ZNF687 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.066

Table S8559.  Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF687 MUTATED 0 1 5 1 4
ZNF687 WILD-TYPE 84 84 80 68 43

Figure S3176.  Get High-res Image Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF687 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0494 (Fisher's exact test), Q value = 0.14

Table S8560.  Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF687 MUTATED 3 1 1 6
ZNF687 WILD-TYPE 92 73 120 74

Figure S3177.  Get High-res Image Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF687 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S8561.  Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF687 MUTATED 4 5 1 1 0 0
ZNF687 WILD-TYPE 48 59 71 103 40 59

Figure S3178.  Get High-res Image Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF687 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 0.16

Table S8562.  Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF687 MUTATED 10 0 1
ZNF687 WILD-TYPE 207 75 98
'ZNF687 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S8563.  Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF687 MUTATED 4 1 3
ZNF687 WILD-TYPE 117 107 69
'ZNF687 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0405 (Fisher's exact test), Q value = 0.13

Table S8564.  Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF687 MUTATED 3 0 1 0 4
ZNF687 WILD-TYPE 85 66 44 55 43

Figure S3179.  Get High-res Image Gene #863: 'ZNF687 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTPN23 MUTATION STATUS' versus 'CN_CNMF'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S8565.  Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTPN23 MUTATED 1 17 2 0
PTPN23 WILD-TYPE 203 120 45 3

Figure S3180.  Get High-res Image Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPN23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00067 (Fisher's exact test), Q value = 0.013

Table S8566.  Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTPN23 MUTATED 0 11 4 0 2
PTPN23 WILD-TYPE 39 85 40 88 78

Figure S3181.  Get High-res Image Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPN23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S8567.  Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTPN23 MUTATED 2 7 4 1 2
PTPN23 WILD-TYPE 24 72 69 81 56
'PTPN23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.33

Table S8568.  Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTPN23 MUTATED 4 5 5 2
PTPN23 WILD-TYPE 123 46 66 67
'PTPN23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.013

Table S8569.  Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTPN23 MUTATED 0 5 11 4 0
PTPN23 WILD-TYPE 84 80 74 65 47

Figure S3182.  Get High-res Image Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTPN23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00297 (Fisher's exact test), Q value = 0.029

Table S8570.  Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTPN23 MUTATED 5 2 2 11
PTPN23 WILD-TYPE 90 72 119 69

Figure S3183.  Get High-res Image Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTPN23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00175 (Fisher's exact test), Q value = 0.022

Table S8571.  Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTPN23 MUTATED 5 9 1 3 3 0
PTPN23 WILD-TYPE 47 55 71 101 37 59

Figure S3184.  Get High-res Image Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTPN23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0086 (Fisher's exact test), Q value = 0.052

Table S8572.  Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTPN23 MUTATED 18 0 3
PTPN23 WILD-TYPE 199 75 96

Figure S3185.  Get High-res Image Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTPN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.55

Table S8573.  Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTPN23 MUTATED 8 3 4
PTPN23 WILD-TYPE 113 105 68
'PTPN23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00712 (Fisher's exact test), Q value = 0.047

Table S8574.  Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTPN23 MUTATED 8 0 4 0 3
PTPN23 WILD-TYPE 80 66 41 55 44

Figure S3186.  Get High-res Image Gene #864: 'PTPN23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ADAM7 MUTATION STATUS' versus 'CN_CNMF'

P value = 6e-04 (Fisher's exact test), Q value = 0.012

Table S8575.  Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ADAM7 MUTATED 2 13 0 0
ADAM7 WILD-TYPE 202 124 47 3

Figure S3187.  Get High-res Image Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADAM7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.0082

Table S8576.  Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ADAM7 MUTATED 0 11 1 0 1
ADAM7 WILD-TYPE 39 85 43 88 79

Figure S3188.  Get High-res Image Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADAM7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S8577.  Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ADAM7 MUTATED 0 5 5 2 1
ADAM7 WILD-TYPE 26 74 68 80 57
'ADAM7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00021 (Fisher's exact test), Q value = 0.0062

Table S8578.  Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ADAM7 MUTATED 1 8 3 1
ADAM7 WILD-TYPE 126 43 68 68

Figure S3189.  Get High-res Image Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ADAM7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00975 (Fisher's exact test), Q value = 0.056

Table S8579.  Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ADAM7 MUTATED 1 4 9 1 0
ADAM7 WILD-TYPE 83 81 76 68 47

Figure S3190.  Get High-res Image Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ADAM7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00776 (Fisher's exact test), Q value = 0.049

Table S8580.  Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ADAM7 MUTATED 2 4 1 8
ADAM7 WILD-TYPE 93 70 120 72

Figure S3191.  Get High-res Image Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ADAM7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S8581.  Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ADAM7 MUTATED 4 5 3 4 0 0
ADAM7 WILD-TYPE 48 59 69 100 40 59
'ADAM7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.64

Table S8582.  Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ADAM7 MUTATED 11 3 2
ADAM7 WILD-TYPE 206 72 97
'ADAM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S8583.  Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ADAM7 MUTATED 6 1 3
ADAM7 WILD-TYPE 115 107 69
'ADAM7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.429 (Fisher's exact test), Q value = 0.55

Table S8584.  Gene #865: 'ADAM7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ADAM7 MUTATED 3 2 2 0 3
ADAM7 WILD-TYPE 85 64 43 55 44
'NOP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.18

Table S8585.  Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NOP2 MUTATED 1 6 1 0
NOP2 WILD-TYPE 203 131 46 3
'NOP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00389 (Fisher's exact test), Q value = 0.034

Table S8586.  Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NOP2 MUTATED 1 7 0 0 0
NOP2 WILD-TYPE 38 89 44 88 80

Figure S3192.  Get High-res Image Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NOP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.262 (Fisher's exact test), Q value = 0.39

Table S8587.  Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NOP2 MUTATED 1 0 3 1 1
NOP2 WILD-TYPE 25 79 70 81 57
'NOP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S8588.  Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NOP2 MUTATED 3 2 0 1
NOP2 WILD-TYPE 124 49 71 68
'NOP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.31

Table S8589.  Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NOP2 MUTATED 0 1 3 3 0
NOP2 WILD-TYPE 84 84 82 66 47
'NOP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S8590.  Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NOP2 MUTATED 3 1 0 3
NOP2 WILD-TYPE 92 73 121 77
'NOP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00404 (Fisher's exact test), Q value = 0.034

Table S8591.  Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NOP2 MUTATED 5 0 0 2 1 0
NOP2 WILD-TYPE 47 64 72 102 39 59

Figure S3193.  Get High-res Image Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S8592.  Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NOP2 MUTATED 6 2 0
NOP2 WILD-TYPE 211 73 99
'NOP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.11

Table S8593.  Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NOP2 MUTATED 7 1 0
NOP2 WILD-TYPE 114 107 72

Figure S3194.  Get High-res Image Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NOP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S8594.  Gene #866: 'NOP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NOP2 MUTATED 4 1 0 0 3
NOP2 WILD-TYPE 84 65 45 55 44
'FAM26E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S8595.  Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM26E MUTATED 0 2 1 0
FAM26E WILD-TYPE 204 135 46 3
'FAM26E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S8596.  Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM26E MUTATED 0 3 0 0 0
FAM26E WILD-TYPE 39 93 44 88 80
'FAM26E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S8597.  Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM26E MUTATED 0 0 0 1 2
FAM26E WILD-TYPE 26 79 73 81 56
'FAM26E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.13

Table S8598.  Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM26E MUTATED 0 2 0 1
FAM26E WILD-TYPE 127 49 71 68

Figure S3195.  Get High-res Image Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM26E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S8599.  Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM26E MUTATED 0 0 2 0 1
FAM26E WILD-TYPE 84 85 83 69 46
'FAM26E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0881 (Fisher's exact test), Q value = 0.2

Table S8600.  Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM26E MUTATED 0 1 0 2
FAM26E WILD-TYPE 95 73 121 78
'FAM26E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S8601.  Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM26E MUTATED 0 1 1 0 1 0
FAM26E WILD-TYPE 52 63 71 104 39 59
'FAM26E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 0.83

Table S8602.  Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM26E MUTATED 2 1 0
FAM26E WILD-TYPE 215 74 99
'FAM26E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S8603.  Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM26E MUTATED 1 0 2
FAM26E WILD-TYPE 120 108 70
'FAM26E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.67

Table S8604.  Gene #867: 'FAM26E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM26E MUTATED 1 0 1 0 1
FAM26E WILD-TYPE 87 66 44 55 46
'OTX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00318 (Fisher's exact test), Q value = 0.03

Table S8605.  Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OTX2 MUTATED 0 8 1 0
OTX2 WILD-TYPE 204 129 46 3

Figure S3196.  Get High-res Image Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OTX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 0.18

Table S8606.  Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OTX2 MUTATED 0 5 0 0 1
OTX2 WILD-TYPE 39 91 44 88 79
'OTX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.647 (Fisher's exact test), Q value = 0.73

Table S8607.  Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OTX2 MUTATED 0 2 2 1 3
OTX2 WILD-TYPE 26 77 71 81 55
'OTX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00178 (Fisher's exact test), Q value = 0.022

Table S8608.  Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OTX2 MUTATED 0 5 2 1
OTX2 WILD-TYPE 127 46 69 68

Figure S3197.  Get High-res Image Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OTX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.277 (Fisher's exact test), Q value = 0.41

Table S8609.  Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OTX2 MUTATED 0 3 4 1 1
OTX2 WILD-TYPE 84 82 81 68 46
'OTX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 0.43

Table S8610.  Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OTX2 MUTATED 2 2 1 4
OTX2 WILD-TYPE 93 72 120 76
'OTX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00347 (Fisher's exact test), Q value = 0.032

Table S8611.  Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OTX2 MUTATED 3 5 1 0 0 0
OTX2 WILD-TYPE 49 59 71 104 40 59

Figure S3198.  Get High-res Image Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OTX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.098 (Fisher's exact test), Q value = 0.21

Table S8612.  Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OTX2 MUTATED 8 1 0
OTX2 WILD-TYPE 209 74 99
'OTX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S8613.  Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OTX2 MUTATED 3 0 3
OTX2 WILD-TYPE 118 108 69
'OTX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00134 (Fisher's exact test), Q value = 0.018

Table S8614.  Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OTX2 MUTATED 0 0 2 0 4
OTX2 WILD-TYPE 88 66 43 55 43

Figure S3199.  Get High-res Image Gene #868: 'OTX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMEM116 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.78

Table S8615.  Gene #869: 'TMEM116 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMEM116 MUTATED 1 2 0 0
TMEM116 WILD-TYPE 203 135 47 3
'TMEM116 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.84

Table S8616.  Gene #869: 'TMEM116 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMEM116 MUTATED 0 1 1 0 1
TMEM116 WILD-TYPE 26 78 72 82 57
'TMEM116 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S8617.  Gene #869: 'TMEM116 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMEM116 MUTATED 1 2 0 0
TMEM116 WILD-TYPE 126 49 71 69
'TMEM116 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0801 (Fisher's exact test), Q value = 0.19

Table S8618.  Gene #869: 'TMEM116 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMEM116 MUTATED 2 1 0 0 0 0
TMEM116 WILD-TYPE 50 63 72 104 40 59
'TMEM116 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.68

Table S8619.  Gene #869: 'TMEM116 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMEM116 MUTATED 3 0 0
TMEM116 WILD-TYPE 214 75 99
'IRS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S8620.  Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IRS4 MUTATED 8 14 2 0
IRS4 WILD-TYPE 196 123 45 3
'IRS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0837 (Fisher's exact test), Q value = 0.2

Table S8621.  Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IRS4 MUTATED 1 11 3 3 2
IRS4 WILD-TYPE 38 85 41 85 78
'IRS4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0947 (Fisher's exact test), Q value = 0.21

Table S8622.  Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IRS4 MUTATED 0 7 5 1 5
IRS4 WILD-TYPE 26 72 68 81 53
'IRS4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S8623.  Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IRS4 MUTATED 2 10 6 0
IRS4 WILD-TYPE 125 41 65 69

Figure S3200.  Get High-res Image Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00733 (Fisher's exact test), Q value = 0.048

Table S8624.  Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IRS4 MUTATED 3 4 13 1 2
IRS4 WILD-TYPE 81 81 72 68 45

Figure S3201.  Get High-res Image Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IRS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0424 (Fisher's exact test), Q value = 0.13

Table S8625.  Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IRS4 MUTATED 5 1 7 10
IRS4 WILD-TYPE 90 73 114 70

Figure S3202.  Get High-res Image Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IRS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S8626.  Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IRS4 MUTATED 4 8 5 3 2 2
IRS4 WILD-TYPE 48 56 67 101 38 57
'IRS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S8627.  Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IRS4 MUTATED 18 3 3
IRS4 WILD-TYPE 199 72 96
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 0.8

Table S8628.  Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IRS4 MUTATED 7 5 5
IRS4 WILD-TYPE 114 103 67
'IRS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S8629.  Gene #870: 'IRS4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IRS4 MUTATED 7 1 5 1 3
IRS4 WILD-TYPE 81 65 40 54 44
'C9ORF152 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.716 (Fisher's exact test), Q value = 0.79

Table S8630.  Gene #871: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C9ORF152 MUTATED 1 2 0 0
C9ORF152 WILD-TYPE 203 135 47 3
'C9ORF152 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.67

Table S8631.  Gene #871: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C9ORF152 MUTATED 0 2 1 0 0
C9ORF152 WILD-TYPE 26 77 72 82 58
'C9ORF152 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.883 (Fisher's exact test), Q value = 0.92

Table S8632.  Gene #871: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C9ORF152 MUTATED 2 0 1 0
C9ORF152 WILD-TYPE 125 51 70 69
'C9ORF152 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S8633.  Gene #871: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C9ORF152 MUTATED 0 1 2 0 0
C9ORF152 WILD-TYPE 84 84 83 69 47
'C9ORF152 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 0.93

Table S8634.  Gene #871: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C9ORF152 MUTATED 1 1 1 0
C9ORF152 WILD-TYPE 94 73 120 80
'C9ORF152 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8635.  Gene #871: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C9ORF152 MUTATED 0 1 1 1 0 0
C9ORF152 WILD-TYPE 52 63 71 103 40 59
'C9ORF152 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.68

Table S8636.  Gene #871: 'C9ORF152 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C9ORF152 MUTATED 3 0 0
C9ORF152 WILD-TYPE 214 75 99
'YIF1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.57

Table S8637.  Gene #872: 'YIF1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
YIF1A MUTATED 2 3 0 0
YIF1A WILD-TYPE 202 134 47 3
'YIF1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.57

Table S8638.  Gene #872: 'YIF1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
YIF1A MUTATED 0 3 0 1 0
YIF1A WILD-TYPE 39 93 44 87 80
'YIF1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.916 (Fisher's exact test), Q value = 0.95

Table S8639.  Gene #872: 'YIF1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
YIF1A MUTATED 0 1 2 1 1
YIF1A WILD-TYPE 26 78 71 81 57
'YIF1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.49

Table S8640.  Gene #872: 'YIF1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
YIF1A MUTATED 2 2 1 0
YIF1A WILD-TYPE 125 49 70 69
'YIF1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.51 (Fisher's exact test), Q value = 0.62

Table S8641.  Gene #872: 'YIF1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
YIF1A MUTATED 1 1 3 0 0
YIF1A WILD-TYPE 83 84 82 69 47
'YIF1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S8642.  Gene #872: 'YIF1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
YIF1A MUTATED 0 0 2 3
YIF1A WILD-TYPE 95 74 119 77
'YIF1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8643.  Gene #872: 'YIF1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
YIF1A MUTATED 1 1 1 1 0 1
YIF1A WILD-TYPE 51 63 71 103 40 58
'YIF1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8644.  Gene #872: 'YIF1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
YIF1A MUTATED 3 1 1
YIF1A WILD-TYPE 214 74 98
'YIF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 0.76

Table S8645.  Gene #872: 'YIF1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
YIF1A MUTATED 2 2 0
YIF1A WILD-TYPE 119 106 72
'YIF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8646.  Gene #872: 'YIF1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
YIF1A MUTATED 1 1 0 1 1
YIF1A WILD-TYPE 87 65 45 54 46
'RUSC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00709 (Fisher's exact test), Q value = 0.047

Table S8647.  Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RUSC1 MUTATED 4 14 1 0
RUSC1 WILD-TYPE 200 123 46 3

Figure S3203.  Get High-res Image Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RUSC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00585 (Fisher's exact test), Q value = 0.042

Table S8648.  Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RUSC1 MUTATED 4 9 2 0 2
RUSC1 WILD-TYPE 35 87 42 88 78

Figure S3204.  Get High-res Image Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RUSC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 0.72

Table S8649.  Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RUSC1 MUTATED 2 5 3 2 2
RUSC1 WILD-TYPE 24 74 70 80 56
'RUSC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0865 (Fisher's exact test), Q value = 0.2

Table S8650.  Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RUSC1 MUTATED 4 6 2 2
RUSC1 WILD-TYPE 123 45 69 67
'RUSC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.09

Table S8651.  Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RUSC1 MUTATED 1 2 9 2 4
RUSC1 WILD-TYPE 83 83 76 67 43

Figure S3205.  Get High-res Image Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RUSC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S8652.  Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RUSC1 MUTATED 5 4 2 7
RUSC1 WILD-TYPE 90 70 119 73
'RUSC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00013 (Fisher's exact test), Q value = 0.0046

Table S8653.  Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RUSC1 MUTATED 8 5 1 1 4 0
RUSC1 WILD-TYPE 44 59 71 103 36 59

Figure S3206.  Get High-res Image Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RUSC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S8654.  Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RUSC1 MUTATED 15 2 2
RUSC1 WILD-TYPE 202 73 97
'RUSC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0121 (Fisher's exact test), Q value = 0.063

Table S8655.  Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RUSC1 MUTATED 11 1 5
RUSC1 WILD-TYPE 110 107 67

Figure S3207.  Get High-res Image Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RUSC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00226 (Fisher's exact test), Q value = 0.025

Table S8656.  Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RUSC1 MUTATED 6 1 2 0 8
RUSC1 WILD-TYPE 82 65 43 55 39

Figure S3208.  Get High-res Image Gene #873: 'RUSC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CNTLN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00325 (Fisher's exact test), Q value = 0.031

Table S8657.  Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CNTLN MUTATED 9 22 5 0
CNTLN WILD-TYPE 195 115 42 3

Figure S3209.  Get High-res Image Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CNTLN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.014

Table S8658.  Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CNTLN MUTATED 2 19 5 3 3
CNTLN WILD-TYPE 37 77 39 85 77

Figure S3210.  Get High-res Image Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNTLN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00029 (Fisher's exact test), Q value = 0.0076

Table S8659.  Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CNTLN MUTATED 2 9 12 0 10
CNTLN WILD-TYPE 24 70 61 82 48

Figure S3211.  Get High-res Image Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CNTLN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S8660.  Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CNTLN MUTATED 11 14 7 1
CNTLN WILD-TYPE 116 37 64 68

Figure S3212.  Get High-res Image Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CNTLN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00194 (Fisher's exact test), Q value = 0.023

Table S8661.  Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CNTLN MUTATED 3 5 14 4 10
CNTLN WILD-TYPE 81 80 71 65 37

Figure S3213.  Get High-res Image Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CNTLN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S8662.  Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CNTLN MUTATED 4 4 5 23
CNTLN WILD-TYPE 91 70 116 57

Figure S3214.  Get High-res Image Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CNTLN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.045 (Fisher's exact test), Q value = 0.13

Table S8663.  Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CNTLN MUTATED 9 10 5 6 4 2
CNTLN WILD-TYPE 43 54 67 98 36 57

Figure S3215.  Get High-res Image Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CNTLN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.021 (Fisher's exact test), Q value = 0.087

Table S8664.  Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CNTLN MUTATED 28 3 5
CNTLN WILD-TYPE 189 72 94

Figure S3216.  Get High-res Image Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CNTLN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0428 (Fisher's exact test), Q value = 0.13

Table S8665.  Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CNTLN MUTATED 14 4 9
CNTLN WILD-TYPE 107 104 63

Figure S3217.  Get High-res Image Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CNTLN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0193 (Fisher's exact test), Q value = 0.082

Table S8666.  Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CNTLN MUTATED 8 2 6 2 9
CNTLN WILD-TYPE 80 64 39 53 38

Figure S3218.  Get High-res Image Gene #874: 'CNTLN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NUAK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.12

Table S8667.  Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NUAK1 MUTATED 4 11 3 0
NUAK1 WILD-TYPE 200 126 44 3

Figure S3219.  Get High-res Image Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NUAK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.15

Table S8668.  Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NUAK1 MUTATED 2 8 3 1 1
NUAK1 WILD-TYPE 37 88 41 87 79
'NUAK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.2

Table S8669.  Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NUAK1 MUTATED 1 6 2 1 6
NUAK1 WILD-TYPE 25 73 71 81 52
'NUAK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00232 (Fisher's exact test), Q value = 0.025

Table S8670.  Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NUAK1 MUTATED 2 8 4 2
NUAK1 WILD-TYPE 125 43 67 67

Figure S3220.  Get High-res Image Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NUAK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S8671.  Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NUAK1 MUTATED 1 3 8 3 3
NUAK1 WILD-TYPE 83 82 77 66 44
'NUAK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S8672.  Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NUAK1 MUTATED 5 2 3 8
NUAK1 WILD-TYPE 90 72 118 72
'NUAK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.06 (Fisher's exact test), Q value = 0.16

Table S8673.  Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NUAK1 MUTATED 4 6 5 2 0 1
NUAK1 WILD-TYPE 48 58 67 102 40 58
'NUAK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0877 (Fisher's exact test), Q value = 0.2

Table S8674.  Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NUAK1 MUTATED 14 3 1
NUAK1 WILD-TYPE 203 72 98
'NUAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.17

Table S8675.  Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NUAK1 MUTATED 8 1 4
NUAK1 WILD-TYPE 113 107 68
'NUAK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.13

Table S8676.  Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NUAK1 MUTATED 4 0 3 1 5
NUAK1 WILD-TYPE 84 66 42 54 42

Figure S3221.  Get High-res Image Gene #875: 'NUAK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GCG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S8677.  Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GCG MUTATED 0 6 1 0
GCG WILD-TYPE 204 131 46 3

Figure S3222.  Get High-res Image Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GCG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.39

Table S8678.  Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GCG MUTATED 1 3 2 0 1
GCG WILD-TYPE 38 93 42 88 79
'GCG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.44

Table S8679.  Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GCG MUTATED 1 1 2 0 2
GCG WILD-TYPE 25 78 71 82 56
'GCG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0803 (Fisher's exact test), Q value = 0.19

Table S8680.  Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GCG MUTATED 3 3 0 0
GCG WILD-TYPE 124 48 71 69
'GCG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0574 (Fisher's exact test), Q value = 0.16

Table S8681.  Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GCG MUTATED 0 1 5 1 0
GCG WILD-TYPE 84 84 80 68 47
'GCG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.688 (Fisher's exact test), Q value = 0.76

Table S8682.  Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GCG MUTATED 1 1 2 3
GCG WILD-TYPE 94 73 119 77
'GCG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S8683.  Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GCG MUTATED 3 2 1 1 0 0
GCG WILD-TYPE 49 62 71 103 40 59
'GCG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S8684.  Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GCG MUTATED 6 1 0
GCG WILD-TYPE 211 74 99
'GCG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S8685.  Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GCG MUTATED 3 0 3
GCG WILD-TYPE 118 108 69
'GCG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S8686.  Gene #876: 'GCG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GCG MUTATED 1 1 2 0 2
GCG WILD-TYPE 87 65 43 55 45
'VPS4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00234 (Fisher's exact test), Q value = 0.025

Table S8687.  Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
VPS4B MUTATED 0 8 0 0
VPS4B WILD-TYPE 204 129 47 3

Figure S3223.  Get High-res Image Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'VPS4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.46

Table S8688.  Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
VPS4B MUTATED 1 2 0 0 3
VPS4B WILD-TYPE 38 94 44 88 77
'VPS4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 0.5

Table S8689.  Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
VPS4B MUTATED 2 1 2 1 1
VPS4B WILD-TYPE 24 78 71 81 57
'VPS4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 0.13

Table S8690.  Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
VPS4B MUTATED 2 4 1 0
VPS4B WILD-TYPE 125 47 70 69

Figure S3224.  Get High-res Image Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'VPS4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S8691.  Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
VPS4B MUTATED 1 1 5 1 0
VPS4B WILD-TYPE 83 84 80 68 47
'VPS4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 0.56

Table S8692.  Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
VPS4B MUTATED 3 1 1 3
VPS4B WILD-TYPE 92 73 120 77
'VPS4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.477 (Fisher's exact test), Q value = 0.59

Table S8693.  Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
VPS4B MUTATED 2 3 1 1 0 1
VPS4B WILD-TYPE 50 61 71 103 40 58
'VPS4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S8694.  Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
VPS4B MUTATED 7 0 1
VPS4B WILD-TYPE 210 75 98
'VPS4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S8695.  Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
VPS4B MUTATED 3 1 2
VPS4B WILD-TYPE 118 107 70
'VPS4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S8696.  Gene #877: 'VPS4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
VPS4B MUTATED 1 1 2 0 2
VPS4B WILD-TYPE 87 65 43 55 45
'C12ORF40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.67

Table S8697.  Gene #878: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C12ORF40 MUTATED 3 4 0 0
C12ORF40 WILD-TYPE 201 133 47 3
'C12ORF40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.64

Table S8698.  Gene #878: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C12ORF40 MUTATED 1 2 0 0 1
C12ORF40 WILD-TYPE 38 94 44 88 79
'C12ORF40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 0.2

Table S8699.  Gene #878: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C12ORF40 MUTATED 2 0 3 1 1
C12ORF40 WILD-TYPE 24 79 70 81 57
'C12ORF40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0917 (Fisher's exact test), Q value = 0.21

Table S8700.  Gene #878: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C12ORF40 MUTATED 5 2 0 0
C12ORF40 WILD-TYPE 122 49 71 69
'C12ORF40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S8701.  Gene #878: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C12ORF40 MUTATED 2 2 1 1 1
C12ORF40 WILD-TYPE 82 83 84 68 46
'C12ORF40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.33

Table S8702.  Gene #878: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C12ORF40 MUTATED 3 0 1 3
C12ORF40 WILD-TYPE 92 74 120 77
'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 0.84

Table S8703.  Gene #878: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C12ORF40 MUTATED 1 2 1 1 0 2
C12ORF40 WILD-TYPE 51 62 71 103 40 57
'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.62

Table S8704.  Gene #878: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C12ORF40 MUTATED 5 0 2
C12ORF40 WILD-TYPE 212 75 97
'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S8705.  Gene #878: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C12ORF40 MUTATED 0 2 1
C12ORF40 WILD-TYPE 121 106 71
'C12ORF40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S8706.  Gene #878: 'C12ORF40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C12ORF40 MUTATED 0 1 0 1 1
C12ORF40 WILD-TYPE 88 65 45 54 46
'NHSL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S8707.  Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NHSL2 MUTATED 1 2 2 0
NHSL2 WILD-TYPE 203 135 45 3
'NHSL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S8708.  Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NHSL2 MUTATED 1 4 0 0 1
NHSL2 WILD-TYPE 38 92 44 88 79
'NHSL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.53

Table S8709.  Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NHSL2 MUTATED 0 1 2 0 2
NHSL2 WILD-TYPE 26 78 71 82 56
'NHSL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00278 (Fisher's exact test), Q value = 0.028

Table S8710.  Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NHSL2 MUTATED 0 4 1 0
NHSL2 WILD-TYPE 127 47 70 69

Figure S3225.  Get High-res Image Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NHSL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0609 (Fisher's exact test), Q value = 0.16

Table S8711.  Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NHSL2 MUTATED 0 0 4 1 1
NHSL2 WILD-TYPE 84 85 81 68 46
'NHSL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S8712.  Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NHSL2 MUTATED 2 0 1 3
NHSL2 WILD-TYPE 93 74 120 77
'NHSL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S8713.  Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NHSL2 MUTATED 1 3 1 0 1 0
NHSL2 WILD-TYPE 51 61 71 104 39 59
'NHSL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S8714.  Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NHSL2 MUTATED 5 1 0
NHSL2 WILD-TYPE 212 74 99
'NHSL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S8715.  Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NHSL2 MUTATED 2 0 4
NHSL2 WILD-TYPE 119 108 68

Figure S3226.  Get High-res Image Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NHSL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0015 (Fisher's exact test), Q value = 0.02

Table S8716.  Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NHSL2 MUTATED 0 0 2 0 4
NHSL2 WILD-TYPE 88 66 43 55 43

Figure S3227.  Get High-res Image Gene #879: 'NHSL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MYO9B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.074

Table S8717.  Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MYO9B MUTATED 5 14 1 0
MYO9B WILD-TYPE 199 123 46 3

Figure S3228.  Get High-res Image Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYO9B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.18

Table S8718.  Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MYO9B MUTATED 2 9 3 2 1
MYO9B WILD-TYPE 37 87 41 86 79
'MYO9B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.11

Table S8719.  Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MYO9B MUTATED 2 7 4 0 5
MYO9B WILD-TYPE 24 72 69 82 53

Figure S3229.  Get High-res Image Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MYO9B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.37

Table S8720.  Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MYO9B MUTATED 6 6 4 2
MYO9B WILD-TYPE 121 45 67 67
'MYO9B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S8721.  Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MYO9B MUTATED 1 3 8 4 2
MYO9B WILD-TYPE 83 82 77 65 45
'MYO9B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S8722.  Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MYO9B MUTATED 5 2 3 8
MYO9B WILD-TYPE 90 72 118 72
'MYO9B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00282 (Fisher's exact test), Q value = 0.028

Table S8723.  Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MYO9B MUTATED 6 8 3 2 1 0
MYO9B WILD-TYPE 46 56 69 102 39 59

Figure S3230.  Get High-res Image Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MYO9B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00299 (Fisher's exact test), Q value = 0.029

Table S8724.  Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MYO9B MUTATED 18 0 2
MYO9B WILD-TYPE 199 75 97

Figure S3231.  Get High-res Image Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MYO9B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S8725.  Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MYO9B MUTATED 6 2 5
MYO9B WILD-TYPE 115 106 67
'MYO9B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0976 (Fisher's exact test), Q value = 0.21

Table S8726.  Gene #880: 'MYO9B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MYO9B MUTATED 5 1 3 0 4
MYO9B WILD-TYPE 83 65 42 55 43
'PCLO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S8727.  Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PCLO MUTATED 34 33 11 1
PCLO WILD-TYPE 170 104 36 2
'PCLO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S8728.  Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PCLO MUTATED 4 32 5 17 4
PCLO WILD-TYPE 35 64 39 71 76

Figure S3232.  Get High-res Image Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCLO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0176 (Fisher's exact test), Q value = 0.078

Table S8729.  Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PCLO MUTATED 2 25 15 10 11
PCLO WILD-TYPE 24 54 58 72 47

Figure S3233.  Get High-res Image Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PCLO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S8730.  Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PCLO MUTATED 18 20 20 5
PCLO WILD-TYPE 109 31 51 64

Figure S3234.  Get High-res Image Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PCLO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.31

Table S8731.  Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PCLO MUTATED 15 12 23 15 13
PCLO WILD-TYPE 69 73 62 54 34
'PCLO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00698 (Fisher's exact test), Q value = 0.046

Table S8732.  Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PCLO MUTATED 22 12 17 27
PCLO WILD-TYPE 73 62 104 53

Figure S3235.  Get High-res Image Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PCLO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.012

Table S8733.  Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PCLO MUTATED 18 20 12 9 8 12
PCLO WILD-TYPE 34 44 60 95 32 47

Figure S3236.  Get High-res Image Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCLO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00473 (Fisher's exact test), Q value = 0.037

Table S8734.  Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PCLO MUTATED 54 6 19
PCLO WILD-TYPE 163 69 80

Figure S3237.  Get High-res Image Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PCLO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.068

Table S8735.  Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PCLO MUTATED 28 10 14
PCLO WILD-TYPE 93 98 58

Figure S3238.  Get High-res Image Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PCLO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00088 (Fisher's exact test), Q value = 0.015

Table S8736.  Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PCLO MUTATED 12 4 8 11 17
PCLO WILD-TYPE 76 62 37 44 30

Figure S3239.  Get High-res Image Gene #881: 'PCLO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KCNK13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S8737.  Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCNK13 MUTATED 2 6 2 0
KCNK13 WILD-TYPE 202 131 45 3
'KCNK13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.12

Table S8738.  Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCNK13 MUTATED 1 7 0 2 0
KCNK13 WILD-TYPE 38 89 44 86 80

Figure S3240.  Get High-res Image Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNK13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S8739.  Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCNK13 MUTATED 0 1 4 1 4
KCNK13 WILD-TYPE 26 78 69 81 54
'KCNK13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0497 (Fisher's exact test), Q value = 0.14

Table S8740.  Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCNK13 MUTATED 3 5 1 1
KCNK13 WILD-TYPE 124 46 70 68

Figure S3241.  Get High-res Image Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNK13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S8741.  Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCNK13 MUTATED 1 4 5 0 1
KCNK13 WILD-TYPE 83 81 80 69 46
'KCNK13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00136 (Fisher's exact test), Q value = 0.019

Table S8742.  Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCNK13 MUTATED 0 3 1 7
KCNK13 WILD-TYPE 95 71 120 73

Figure S3242.  Get High-res Image Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNK13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S8743.  Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCNK13 MUTATED 4 1 1 4 1 0
KCNK13 WILD-TYPE 48 63 71 100 39 59
'KCNK13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.916 (Fisher's exact test), Q value = 0.95

Table S8744.  Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCNK13 MUTATED 7 2 2
KCNK13 WILD-TYPE 210 73 97
'KCNK13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8745.  Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCNK13 MUTATED 4 3 2
KCNK13 WILD-TYPE 117 105 70
'KCNK13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S8746.  Gene #882: 'KCNK13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCNK13 MUTATED 3 2 2 0 2
KCNK13 WILD-TYPE 85 64 43 55 45
'SHMT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.12

Table S8747.  Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SHMT2 MUTATED 2 8 0 0
SHMT2 WILD-TYPE 202 129 47 3

Figure S3243.  Get High-res Image Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SHMT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.62

Table S8748.  Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SHMT2 MUTATED 0 4 0 1 2
SHMT2 WILD-TYPE 39 92 44 87 78
'SHMT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S8749.  Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SHMT2 MUTATED 1 2 5 1 0
SHMT2 WILD-TYPE 25 77 68 81 58
'SHMT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.073

Table S8750.  Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SHMT2 MUTATED 1 5 2 1
SHMT2 WILD-TYPE 126 46 69 68

Figure S3244.  Get High-res Image Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SHMT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.19

Table S8751.  Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SHMT2 MUTATED 2 1 6 0 1
SHMT2 WILD-TYPE 82 84 79 69 46
'SHMT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.532 (Fisher's exact test), Q value = 0.64

Table S8752.  Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SHMT2 MUTATED 2 2 2 4
SHMT2 WILD-TYPE 93 72 119 76
'SHMT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.55

Table S8753.  Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SHMT2 MUTATED 2 4 1 2 0 1
SHMT2 WILD-TYPE 50 60 71 102 40 58
'SHMT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8754.  Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SHMT2 MUTATED 6 2 2
SHMT2 WILD-TYPE 211 73 97
'SHMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8755.  Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SHMT2 MUTATED 2 2 1
SHMT2 WILD-TYPE 119 106 71
'SHMT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8756.  Gene #883: 'SHMT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SHMT2 MUTATED 1 1 1 1 1
SHMT2 WILD-TYPE 87 65 44 54 46
'TBC1D22B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0559 (Fisher's exact test), Q value = 0.15

Table S8757.  Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TBC1D22B MUTATED 1 6 0 0
TBC1D22B WILD-TYPE 203 131 47 3
'TBC1D22B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00613 (Fisher's exact test), Q value = 0.043

Table S8758.  Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TBC1D22B MUTATED 0 6 0 0 0
TBC1D22B WILD-TYPE 39 90 44 88 80

Figure S3245.  Get High-res Image Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TBC1D22B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.036 (Fisher's exact test), Q value = 0.12

Table S8759.  Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TBC1D22B MUTATED 0 0 4 0 2
TBC1D22B WILD-TYPE 26 79 69 82 56

Figure S3246.  Get High-res Image Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TBC1D22B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00082 (Fisher's exact test), Q value = 0.014

Table S8760.  Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TBC1D22B MUTATED 1 5 0 0
TBC1D22B WILD-TYPE 126 46 71 69

Figure S3247.  Get High-res Image Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.36

Table S8761.  Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TBC1D22B MUTATED 0 1 4 1 1
TBC1D22B WILD-TYPE 84 84 81 68 46
'TBC1D22B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S8762.  Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TBC1D22B MUTATED 1 1 0 5
TBC1D22B WILD-TYPE 94 73 121 75

Figure S3248.  Get High-res Image Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.17

Table S8763.  Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TBC1D22B MUTATED 4 1 1 1 0 0
TBC1D22B WILD-TYPE 48 63 71 103 40 59
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S8764.  Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TBC1D22B MUTATED 6 1 0
TBC1D22B WILD-TYPE 211 74 99
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 0.43

Table S8765.  Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TBC1D22B MUTATED 4 1 0
TBC1D22B WILD-TYPE 117 107 72
'TBC1D22B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S8766.  Gene #884: 'TBC1D22B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TBC1D22B MUTATED 1 1 0 0 3
TBC1D22B WILD-TYPE 87 65 45 55 44
'TACC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00063 (Fisher's exact test), Q value = 0.012

Table S8767.  Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TACC2 MUTATED 7 22 3 0
TACC2 WILD-TYPE 197 115 44 3

Figure S3249.  Get High-res Image Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TACC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.26

Table S8768.  Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TACC2 MUTATED 1 11 4 6 2
TACC2 WILD-TYPE 38 85 40 82 78
'TACC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S8769.  Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TACC2 MUTATED 2 12 5 1 7
TACC2 WILD-TYPE 24 67 68 81 51

Figure S3250.  Get High-res Image Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TACC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.11

Table S8770.  Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TACC2 MUTATED 9 10 5 3
TACC2 WILD-TYPE 118 41 66 66

Figure S3251.  Get High-res Image Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TACC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S8771.  Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TACC2 MUTATED 5 4 12 3 5
TACC2 WILD-TYPE 79 81 73 66 42
'TACC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0756 (Fisher's exact test), Q value = 0.18

Table S8772.  Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TACC2 MUTATED 7 4 6 12
TACC2 WILD-TYPE 88 70 115 68
'TACC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0169 (Fisher's exact test), Q value = 0.076

Table S8773.  Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TACC2 MUTATED 7 12 4 4 2 4
TACC2 WILD-TYPE 45 52 68 100 38 55

Figure S3252.  Get High-res Image Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S8774.  Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TACC2 MUTATED 23 4 6
TACC2 WILD-TYPE 194 71 93
'TACC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00051 (Fisher's exact test), Q value = 0.011

Table S8775.  Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TACC2 MUTATED 9 1 11
TACC2 WILD-TYPE 112 107 61

Figure S3253.  Get High-res Image Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TACC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00221 (Fisher's exact test), Q value = 0.024

Table S8776.  Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TACC2 MUTATED 5 2 7 0 7
TACC2 WILD-TYPE 83 64 38 55 40

Figure S3254.  Get High-res Image Gene #885: 'TACC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EXOC3L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S8777.  Gene #886: 'EXOC3L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EXOC3L2 MUTATED 0 3 0 0
EXOC3L2 WILD-TYPE 204 134 47 3
'EXOC3L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.53

Table S8778.  Gene #886: 'EXOC3L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EXOC3L2 MUTATED 0 0 1 1 1
EXOC3L2 WILD-TYPE 84 85 84 68 46
'EXOC3L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S8779.  Gene #886: 'EXOC3L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EXOC3L2 MUTATED 1 0 0 2
EXOC3L2 WILD-TYPE 94 74 121 78
'EXOC3L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00337 (Fisher's exact test), Q value = 0.031

Table S8780.  Gene #886: 'EXOC3L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EXOC3L2 MUTATED 3 0 0 0 0 0
EXOC3L2 WILD-TYPE 49 64 72 104 40 59

Figure S3255.  Get High-res Image Gene #886: 'EXOC3L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EXOC3L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S8781.  Gene #886: 'EXOC3L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EXOC3L2 MUTATED 3 0 0
EXOC3L2 WILD-TYPE 214 75 99
'BAG4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 0.1

Table S8782.  Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BAG4 MUTATED 0 5 0 0
BAG4 WILD-TYPE 204 132 47 3

Figure S3256.  Get High-res Image Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BAG4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S8783.  Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BAG4 MUTATED 0 3 0 0 0
BAG4 WILD-TYPE 39 93 44 88 80
'BAG4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 0.7

Table S8784.  Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BAG4 MUTATED 0 1 2 0 1
BAG4 WILD-TYPE 26 78 71 82 57
'BAG4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S8785.  Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BAG4 MUTATED 1 2 0 1
BAG4 WILD-TYPE 126 49 71 68
'BAG4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 0.79

Table S8786.  Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BAG4 MUTATED 0 2 1 1 1
BAG4 WILD-TYPE 84 83 84 68 46
'BAG4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S8787.  Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BAG4 MUTATED 3 1 0 1
BAG4 WILD-TYPE 92 73 121 79
'BAG4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0333 (Fisher's exact test), Q value = 0.11

Table S8788.  Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BAG4 MUTATED 1 2 0 0 2 0
BAG4 WILD-TYPE 51 62 72 104 38 59

Figure S3257.  Get High-res Image Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BAG4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S8789.  Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BAG4 MUTATED 3 0 2
BAG4 WILD-TYPE 214 75 97
'BAG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S8790.  Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BAG4 MUTATED 2 1 0
BAG4 WILD-TYPE 119 107 72
'BAG4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S8791.  Gene #887: 'BAG4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BAG4 MUTATED 3 0 0 0 0
BAG4 WILD-TYPE 85 66 45 55 47
'SLC26A8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S8792.  Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC26A8 MUTATED 4 6 0 0
SLC26A8 WILD-TYPE 200 131 47 3
'SLC26A8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 0.19

Table S8793.  Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC26A8 MUTATED 1 6 1 0 1
SLC26A8 WILD-TYPE 38 90 43 88 79
'SLC26A8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S8794.  Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC26A8 MUTATED 1 3 2 1 2
SLC26A8 WILD-TYPE 25 76 71 81 56
'SLC26A8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0279 (Fisher's exact test), Q value = 0.1

Table S8795.  Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC26A8 MUTATED 2 5 1 1
SLC26A8 WILD-TYPE 125 46 70 68

Figure S3258.  Get High-res Image Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S8796.  Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC26A8 MUTATED 1 1 5 1 0
SLC26A8 WILD-TYPE 83 84 80 68 47
'SLC26A8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 0.96

Table S8797.  Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC26A8 MUTATED 2 2 2 2
SLC26A8 WILD-TYPE 93 72 119 78
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.58

Table S8798.  Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC26A8 MUTATED 1 4 2 1 1 1
SLC26A8 WILD-TYPE 51 60 70 103 39 58
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 0.53

Table S8799.  Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC26A8 MUTATED 6 3 1
SLC26A8 WILD-TYPE 211 72 98
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0646 (Fisher's exact test), Q value = 0.17

Table S8800.  Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC26A8 MUTATED 3 1 5
SLC26A8 WILD-TYPE 118 107 67
'SLC26A8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 0.5

Table S8801.  Gene #888: 'SLC26A8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC26A8 MUTATED 1 1 2 2 3
SLC26A8 WILD-TYPE 87 65 43 53 44
'MBOAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S8802.  Gene #889: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MBOAT2 MUTATED 0 3 0 0
MBOAT2 WILD-TYPE 204 134 47 3
'MBOAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 0.83

Table S8803.  Gene #889: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MBOAT2 MUTATED 0 1 1 0 1
MBOAT2 WILD-TYPE 26 78 72 82 57
'MBOAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S8804.  Gene #889: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MBOAT2 MUTATED 1 2 0 0
MBOAT2 WILD-TYPE 126 49 71 69
'MBOAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.075

Table S8805.  Gene #889: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MBOAT2 MUTATED 0 0 0 1 2
MBOAT2 WILD-TYPE 84 85 85 68 45

Figure S3259.  Get High-res Image Gene #889: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MBOAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.306 (Fisher's exact test), Q value = 0.44

Table S8806.  Gene #889: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MBOAT2 MUTATED 2 0 0 1
MBOAT2 WILD-TYPE 93 74 121 79
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.19

Table S8807.  Gene #889: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MBOAT2 MUTATED 2 1 0 0 0 0
MBOAT2 WILD-TYPE 50 63 72 104 40 59
'MBOAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S8808.  Gene #889: 'MBOAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MBOAT2 MUTATED 3 0 0
MBOAT2 WILD-TYPE 214 75 99
'GIMAP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 0.18

Table S8809.  Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GIMAP7 MUTATED 0 4 1 0
GIMAP7 WILD-TYPE 204 133 46 3
'GIMAP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.084

Table S8810.  Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GIMAP7 MUTATED 0 5 0 0 0
GIMAP7 WILD-TYPE 39 91 44 88 80

Figure S3260.  Get High-res Image Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GIMAP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S8811.  Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GIMAP7 MUTATED 1 0 2 0 2
GIMAP7 WILD-TYPE 25 79 71 82 56
'GIMAP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00356 (Fisher's exact test), Q value = 0.032

Table S8812.  Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GIMAP7 MUTATED 1 4 0 0
GIMAP7 WILD-TYPE 126 47 71 69

Figure S3261.  Get High-res Image Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GIMAP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S8813.  Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GIMAP7 MUTATED 0 0 2 1 2
GIMAP7 WILD-TYPE 84 85 83 68 45
'GIMAP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0468 (Fisher's exact test), Q value = 0.14

Table S8814.  Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GIMAP7 MUTATED 2 0 0 3
GIMAP7 WILD-TYPE 93 74 121 77

Figure S3262.  Get High-res Image Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0551 (Fisher's exact test), Q value = 0.15

Table S8815.  Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GIMAP7 MUTATED 0 3 2 0 0 0
GIMAP7 WILD-TYPE 52 61 70 104 40 59
'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S8816.  Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GIMAP7 MUTATED 5 0 0
GIMAP7 WILD-TYPE 212 75 99
'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0857 (Fisher's exact test), Q value = 0.2

Table S8817.  Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GIMAP7 MUTATED 2 0 3
GIMAP7 WILD-TYPE 119 108 69
'GIMAP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0535 (Fisher's exact test), Q value = 0.15

Table S8818.  Gene #890: 'GIMAP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GIMAP7 MUTATED 1 0 3 0 1
GIMAP7 WILD-TYPE 87 66 42 55 46
'C2CD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S8819.  Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C2CD3 MUTATED 8 13 2 0
C2CD3 WILD-TYPE 196 124 45 3
'C2CD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S8820.  Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C2CD3 MUTATED 5 9 1 1 2
C2CD3 WILD-TYPE 34 87 43 87 78

Figure S3263.  Get High-res Image Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C2CD3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 0.88

Table S8821.  Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C2CD3 MUTATED 2 7 4 4 3
C2CD3 WILD-TYPE 24 72 69 78 55
'C2CD3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.1

Table S8822.  Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C2CD3 MUTATED 5 8 5 2
C2CD3 WILD-TYPE 122 43 66 67

Figure S3264.  Get High-res Image Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C2CD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S8823.  Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C2CD3 MUTATED 1 1 15 3 2
C2CD3 WILD-TYPE 83 84 70 66 45

Figure S3265.  Get High-res Image Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C2CD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.379 (Fisher's exact test), Q value = 0.5

Table S8824.  Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C2CD3 MUTATED 4 3 7 8
C2CD3 WILD-TYPE 91 71 114 72
'C2CD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.12

Table S8825.  Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C2CD3 MUTATED 7 5 5 2 3 1
C2CD3 WILD-TYPE 45 59 67 102 37 58

Figure S3266.  Get High-res Image Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C2CD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0056 (Fisher's exact test), Q value = 0.041

Table S8826.  Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C2CD3 MUTATED 20 2 1
C2CD3 WILD-TYPE 197 73 98

Figure S3267.  Get High-res Image Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C2CD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 0.3

Table S8827.  Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C2CD3 MUTATED 10 3 3
C2CD3 WILD-TYPE 111 105 69
'C2CD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00278 (Fisher's exact test), Q value = 0.028

Table S8828.  Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C2CD3 MUTATED 7 0 1 1 7
C2CD3 WILD-TYPE 81 66 44 54 40

Figure S3268.  Get High-res Image Gene #891: 'C2CD3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TAF1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.565 (Fisher's exact test), Q value = 0.66

Table S8829.  Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TAF1D MUTATED 3 4 0 0
TAF1D WILD-TYPE 201 133 47 3
'TAF1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.84 (Fisher's exact test), Q value = 0.89

Table S8830.  Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TAF1D MUTATED 1 3 1 1 1
TAF1D WILD-TYPE 38 93 43 87 79
'TAF1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S8831.  Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TAF1D MUTATED 1 1 3 0 0
TAF1D WILD-TYPE 25 78 70 82 58
'TAF1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.49

Table S8832.  Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TAF1D MUTATED 2 2 1 0
TAF1D WILD-TYPE 125 49 70 69
'TAF1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.29

Table S8833.  Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TAF1D MUTATED 1 0 4 1 0
TAF1D WILD-TYPE 83 85 81 68 47
'TAF1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S8834.  Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TAF1D MUTATED 1 0 2 3
TAF1D WILD-TYPE 94 74 119 77
'TAF1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S8835.  Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TAF1D MUTATED 2 3 1 0 0 1
TAF1D WILD-TYPE 50 61 71 104 40 58
'TAF1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S8836.  Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TAF1D MUTATED 4 1 2
TAF1D WILD-TYPE 213 74 97
'TAF1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.013

Table S8837.  Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TAF1D MUTATED 0 0 5
TAF1D WILD-TYPE 121 108 67

Figure S3269.  Get High-res Image Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TAF1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S8838.  Gene #892: 'TAF1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TAF1D MUTATED 1 0 2 1 1
TAF1D WILD-TYPE 87 66 43 54 46
'CEP120 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S8839.  Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CEP120 MUTATED 0 12 0 0
CEP120 WILD-TYPE 204 125 47 3

Figure S3270.  Get High-res Image Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CEP120 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S8840.  Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CEP120 MUTATED 1 5 1 0 3
CEP120 WILD-TYPE 38 91 43 88 77
'CEP120 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.41

Table S8841.  Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CEP120 MUTATED 2 2 1 1 3
CEP120 WILD-TYPE 24 77 72 81 55
'CEP120 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0291 (Fisher's exact test), Q value = 0.11

Table S8842.  Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CEP120 MUTATED 2 5 1 1
CEP120 WILD-TYPE 125 46 70 68

Figure S3271.  Get High-res Image Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CEP120 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0472 (Fisher's exact test), Q value = 0.14

Table S8843.  Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CEP120 MUTATED 0 2 6 2 0
CEP120 WILD-TYPE 84 83 79 67 47

Figure S3272.  Get High-res Image Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CEP120 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.13

Table S8844.  Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CEP120 MUTATED 2 1 1 6
CEP120 WILD-TYPE 93 73 120 74

Figure S3273.  Get High-res Image Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CEP120 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 0.068

Table S8845.  Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CEP120 MUTATED 3 6 2 1 0 0
CEP120 WILD-TYPE 49 58 70 103 40 59

Figure S3274.  Get High-res Image Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CEP120 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.027 (Fisher's exact test), Q value = 0.1

Table S8846.  Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CEP120 MUTATED 11 1 0
CEP120 WILD-TYPE 206 74 99

Figure S3275.  Get High-res Image Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CEP120 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S8847.  Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CEP120 MUTATED 6 1 3
CEP120 WILD-TYPE 115 107 69
'CEP120 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.07 (Fisher's exact test), Q value = 0.18

Table S8848.  Gene #893: 'CEP120 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CEP120 MUTATED 2 1 3 0 4
CEP120 WILD-TYPE 86 65 42 55 43
'OR2M5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 0.55

Table S8849.  Gene #894: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OR2M5 MUTATED 10 5 0 0
OR2M5 WILD-TYPE 194 132 47 3
'OR2M5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S8850.  Gene #894: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OR2M5 MUTATED 1 7 2 2 1
OR2M5 WILD-TYPE 38 89 42 86 79
'OR2M5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.43

Table S8851.  Gene #894: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OR2M5 MUTATED 0 4 6 2 1
OR2M5 WILD-TYPE 26 75 67 80 57
'OR2M5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.835 (Fisher's exact test), Q value = 0.88

Table S8852.  Gene #894: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OR2M5 MUTATED 7 2 2 2
OR2M5 WILD-TYPE 120 49 69 67
'OR2M5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 0.84

Table S8853.  Gene #894: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OR2M5 MUTATED 2 4 5 3 1
OR2M5 WILD-TYPE 82 81 80 66 46
'OR2M5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 0.85

Table S8854.  Gene #894: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OR2M5 MUTATED 5 2 4 4
OR2M5 WILD-TYPE 90 72 117 76
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.6

Table S8855.  Gene #894: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OR2M5 MUTATED 4 2 1 5 2 1
OR2M5 WILD-TYPE 48 62 71 99 38 58
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 0.97

Table S8856.  Gene #894: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OR2M5 MUTATED 9 3 3
OR2M5 WILD-TYPE 208 72 96
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.61

Table S8857.  Gene #894: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OR2M5 MUTATED 6 4 1
OR2M5 WILD-TYPE 115 104 71
'OR2M5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 0.46

Table S8858.  Gene #894: 'OR2M5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OR2M5 MUTATED 5 1 0 2 3
OR2M5 WILD-TYPE 83 65 45 53 44
'ANKMY2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.57

Table S8859.  Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ANKMY2 MUTATED 1 2 1 0
ANKMY2 WILD-TYPE 203 135 46 3
'ANKMY2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S8860.  Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ANKMY2 MUTATED 2 1 0 0 1
ANKMY2 WILD-TYPE 37 95 44 88 79
'ANKMY2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.57

Table S8861.  Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ANKMY2 MUTATED 1 0 1 1 1
ANKMY2 WILD-TYPE 25 79 72 81 57
'ANKMY2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S8862.  Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ANKMY2 MUTATED 1 2 0 1
ANKMY2 WILD-TYPE 126 49 71 68
'ANKMY2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 0.94

Table S8863.  Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ANKMY2 MUTATED 1 1 2 0 0
ANKMY2 WILD-TYPE 83 84 83 69 47
'ANKMY2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.59

Table S8864.  Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ANKMY2 MUTATED 0 1 1 2
ANKMY2 WILD-TYPE 95 73 120 78
'ANKMY2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.11

Table S8865.  Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ANKMY2 MUTATED 3 0 0 1 0 0
ANKMY2 WILD-TYPE 49 64 72 103 40 59

Figure S3276.  Get High-res Image Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ANKMY2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S8866.  Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ANKMY2 MUTATED 3 1 0
ANKMY2 WILD-TYPE 214 74 99
'ANKMY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.57

Table S8867.  Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ANKMY2 MUTATED 3 1 0
ANKMY2 WILD-TYPE 118 107 72
'ANKMY2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 0.88

Table S8868.  Gene #895: 'ANKMY2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ANKMY2 MUTATED 2 1 0 0 1
ANKMY2 WILD-TYPE 86 65 45 55 46
'TYRO3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.11

Table S8869.  Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TYRO3 MUTATED 2 5 4 0
TYRO3 WILD-TYPE 202 132 43 3

Figure S3277.  Get High-res Image Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TYRO3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S8870.  Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TYRO3 MUTATED 2 5 1 0 2
TYRO3 WILD-TYPE 37 91 43 88 78
'TYRO3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S8871.  Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TYRO3 MUTATED 2 1 3 1 3
TYRO3 WILD-TYPE 24 78 70 81 55
'TYRO3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S8872.  Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TYRO3 MUTATED 4 4 1 1
TYRO3 WILD-TYPE 123 47 70 68
'TYRO3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S8873.  Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TYRO3 MUTATED 0 3 4 2 2
TYRO3 WILD-TYPE 84 82 81 67 45
'TYRO3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.68

Table S8874.  Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TYRO3 MUTATED 3 2 2 4
TYRO3 WILD-TYPE 92 72 119 76
'TYRO3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S8875.  Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TYRO3 MUTATED 2 3 2 1 3 0
TYRO3 WILD-TYPE 50 61 70 103 37 59
'TYRO3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S8876.  Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TYRO3 MUTATED 10 1 0
TYRO3 WILD-TYPE 207 74 99

Figure S3278.  Get High-res Image Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TYRO3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.69

Table S8877.  Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TYRO3 MUTATED 5 2 3
TYRO3 WILD-TYPE 116 106 69
'TYRO3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0595 (Fisher's exact test), Q value = 0.16

Table S8878.  Gene #896: 'TYRO3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TYRO3 MUTATED 2 2 1 0 5
TYRO3 WILD-TYPE 86 64 44 55 42
'VASH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S8879.  Gene #897: 'VASH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
VASH1 MUTATED 1 4 2 0
VASH1 WILD-TYPE 203 133 45 3
'VASH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.53

Table S8880.  Gene #897: 'VASH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
VASH1 MUTATED 1 3 1 0 1
VASH1 WILD-TYPE 38 93 43 88 79
'VASH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 0.87

Table S8881.  Gene #897: 'VASH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
VASH1 MUTATED 0 1 2 1 2
VASH1 WILD-TYPE 26 78 71 81 56
'VASH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.27

Table S8882.  Gene #897: 'VASH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
VASH1 MUTATED 1 3 1 1
VASH1 WILD-TYPE 126 48 70 68
'VASH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S8883.  Gene #897: 'VASH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
VASH1 MUTATED 0 1 4 1 1
VASH1 WILD-TYPE 84 84 81 68 46
'VASH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0547 (Fisher's exact test), Q value = 0.15

Table S8884.  Gene #897: 'VASH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
VASH1 MUTATED 2 1 0 4
VASH1 WILD-TYPE 93 73 121 76
'VASH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.34

Table S8885.  Gene #897: 'VASH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
VASH1 MUTATED 3 2 1 1 0 0
VASH1 WILD-TYPE 49 62 71 103 40 59
'VASH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S8886.  Gene #897: 'VASH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
VASH1 MUTATED 6 1 0
VASH1 WILD-TYPE 211 74 99
'VASH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S8887.  Gene #897: 'VASH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
VASH1 MUTATED 1 1 1
VASH1 WILD-TYPE 120 107 71
'VASH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.87 (Fisher's exact test), Q value = 0.91

Table S8888.  Gene #897: 'VASH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
VASH1 MUTATED 1 1 1 0 0
VASH1 WILD-TYPE 87 65 44 55 47
'MCM4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00114 (Fisher's exact test), Q value = 0.017

Table S8889.  Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MCM4 MUTATED 1 10 4 0
MCM4 WILD-TYPE 203 127 43 3

Figure S3279.  Get High-res Image Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MCM4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00566 (Fisher's exact test), Q value = 0.041

Table S8890.  Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MCM4 MUTATED 2 7 1 0 0
MCM4 WILD-TYPE 37 89 43 88 80

Figure S3280.  Get High-res Image Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MCM4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 0.55

Table S8891.  Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MCM4 MUTATED 1 3 4 1 4
MCM4 WILD-TYPE 25 76 69 81 54
'MCM4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.009

Table S8892.  Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MCM4 MUTATED 4 8 0 1
MCM4 WILD-TYPE 123 43 71 68

Figure S3281.  Get High-res Image Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MCM4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0348 (Fisher's exact test), Q value = 0.12

Table S8893.  Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MCM4 MUTATED 0 2 6 3 4
MCM4 WILD-TYPE 84 83 79 66 43

Figure S3282.  Get High-res Image Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MCM4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00595 (Fisher's exact test), Q value = 0.043

Table S8894.  Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MCM4 MUTATED 5 1 1 8
MCM4 WILD-TYPE 90 73 120 72

Figure S3283.  Get High-res Image Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MCM4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00598 (Fisher's exact test), Q value = 0.043

Table S8895.  Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MCM4 MUTATED 4 7 2 1 1 0
MCM4 WILD-TYPE 48 57 70 103 39 59

Figure S3284.  Get High-res Image Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MCM4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00542 (Fisher's exact test), Q value = 0.04

Table S8896.  Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MCM4 MUTATED 14 1 0
MCM4 WILD-TYPE 203 74 99

Figure S3285.  Get High-res Image Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MCM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.096

Table S8897.  Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MCM4 MUTATED 6 0 4
MCM4 WILD-TYPE 115 108 68

Figure S3286.  Get High-res Image Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MCM4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0353 (Fisher's exact test), Q value = 0.12

Table S8898.  Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MCM4 MUTATED 2 1 2 0 5
MCM4 WILD-TYPE 86 65 43 55 42

Figure S3287.  Get High-res Image Gene #898: 'MCM4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PPP1R12C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00069 (Fisher's exact test), Q value = 0.013

Table S8899.  Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PPP1R12C MUTATED 0 9 0 0
PPP1R12C WILD-TYPE 204 128 47 3

Figure S3288.  Get High-res Image Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPP1R12C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0187 (Fisher's exact test), Q value = 0.08

Table S8900.  Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PPP1R12C MUTATED 1 6 1 0 0
PPP1R12C WILD-TYPE 38 90 43 88 80

Figure S3289.  Get High-res Image Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PPP1R12C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S8901.  Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PPP1R12C MUTATED 0 1 3 1 2
PPP1R12C WILD-TYPE 26 78 70 81 56
'PPP1R12C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0523 (Fisher's exact test), Q value = 0.15

Table S8902.  Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PPP1R12C MUTATED 1 4 1 1
PPP1R12C WILD-TYPE 126 47 70 68
'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S8903.  Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PPP1R12C MUTATED 0 2 4 2 1
PPP1R12C WILD-TYPE 84 83 81 67 46
'PPP1R12C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00599 (Fisher's exact test), Q value = 0.043

Table S8904.  Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PPP1R12C MUTATED 2 1 0 6
PPP1R12C WILD-TYPE 93 73 121 74

Figure S3290.  Get High-res Image Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.16

Table S8905.  Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PPP1R12C MUTATED 4 1 1 1 2 0
PPP1R12C WILD-TYPE 48 63 71 103 38 59
'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0977 (Fisher's exact test), Q value = 0.21

Table S8906.  Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PPP1R12C MUTATED 8 1 0
PPP1R12C WILD-TYPE 209 74 99
'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S8907.  Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PPP1R12C MUTATED 6 1 1
PPP1R12C WILD-TYPE 115 107 71
'PPP1R12C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0162 (Fisher's exact test), Q value = 0.074

Table S8908.  Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PPP1R12C MUTATED 4 0 0 0 4
PPP1R12C WILD-TYPE 84 66 45 55 43

Figure S3291.  Get High-res Image Gene #899: 'PPP1R12C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.28

Table S8909.  Gene #900: 'PRB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRB1 MUTATED 0 2 1 0
PRB1 WILD-TYPE 204 135 46 3
'PRB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.411 (Fisher's exact test), Q value = 0.53

Table S8910.  Gene #900: 'PRB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRB1 MUTATED 0 2 0 0 1
PRB1 WILD-TYPE 26 77 73 82 57
'PRB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 0.16

Table S8911.  Gene #900: 'PRB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRB1 MUTATED 0 2 1 0
PRB1 WILD-TYPE 127 49 70 69
'PRB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S8912.  Gene #900: 'PRB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRB1 MUTATED 0 0 2 0 1
PRB1 WILD-TYPE 84 85 83 69 46
'PRB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0861 (Fisher's exact test), Q value = 0.2

Table S8913.  Gene #900: 'PRB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRB1 MUTATED 0 1 0 2
PRB1 WILD-TYPE 95 73 121 78
'PRB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.6

Table S8914.  Gene #900: 'PRB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRB1 MUTATED 1 1 1 0 0 0
PRB1 WILD-TYPE 51 63 71 104 40 59
'PRB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S8915.  Gene #900: 'PRB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRB1 MUTATED 3 0 0
PRB1 WILD-TYPE 214 75 99
'TPD52L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S8916.  Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TPD52L1 MUTATED 2 7 1 0
TPD52L1 WILD-TYPE 202 130 46 3
'TPD52L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S8917.  Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TPD52L1 MUTATED 2 2 0 2 1
TPD52L1 WILD-TYPE 37 94 44 86 79
'TPD52L1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.63

Table S8918.  Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TPD52L1 MUTATED 0 4 2 1 3
TPD52L1 WILD-TYPE 26 75 71 81 55
'TPD52L1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0416 (Fisher's exact test), Q value = 0.13

Table S8919.  Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TPD52L1 MUTATED 2 5 2 1
TPD52L1 WILD-TYPE 125 46 69 68

Figure S3292.  Get High-res Image Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TPD52L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.68

Table S8920.  Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TPD52L1 MUTATED 1 2 3 3 0
TPD52L1 WILD-TYPE 83 83 82 66 47
'TPD52L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 0.44

Table S8921.  Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TPD52L1 MUTATED 4 1 1 3
TPD52L1 WILD-TYPE 91 73 120 77
'TPD52L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S8922.  Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TPD52L1 MUTATED 2 4 0 1 1 2
TPD52L1 WILD-TYPE 50 60 72 103 39 57
'TPD52L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 0.88

Table S8923.  Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TPD52L1 MUTATED 6 1 3
TPD52L1 WILD-TYPE 211 74 96
'TPD52L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S8924.  Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TPD52L1 MUTATED 4 1 2
TPD52L1 WILD-TYPE 117 107 70
'TPD52L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.957 (Fisher's exact test), Q value = 0.99

Table S8925.  Gene #901: 'TPD52L1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TPD52L1 MUTATED 2 1 1 2 1
TPD52L1 WILD-TYPE 86 65 44 53 46
'IGFALS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S8926.  Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IGFALS MUTATED 3 6 0 0
IGFALS WILD-TYPE 201 131 47 3
'IGFALS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.64

Table S8927.  Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IGFALS MUTATED 0 3 2 1 1
IGFALS WILD-TYPE 39 93 42 87 79
'IGFALS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0411 (Fisher's exact test), Q value = 0.13

Table S8928.  Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IGFALS MUTATED 3 2 2 0 2
IGFALS WILD-TYPE 23 77 71 82 56

Figure S3293.  Get High-res Image Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'IGFALS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0768 (Fisher's exact test), Q value = 0.19

Table S8929.  Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IGFALS MUTATED 3 4 2 0
IGFALS WILD-TYPE 124 47 69 69
'IGFALS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 0.8

Table S8930.  Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IGFALS MUTATED 2 1 3 1 2
IGFALS WILD-TYPE 82 84 82 68 45
'IGFALS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S8931.  Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IGFALS MUTATED 3 1 1 4
IGFALS WILD-TYPE 92 73 120 76
'IGFALS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.54

Table S8932.  Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IGFALS MUTATED 2 2 1 1 0 3
IGFALS WILD-TYPE 50 62 71 103 40 56
'IGFALS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S8933.  Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IGFALS MUTATED 6 0 3
IGFALS WILD-TYPE 211 75 96
'IGFALS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.16

Table S8934.  Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IGFALS MUTATED 1 0 3
IGFALS WILD-TYPE 120 108 69
'IGFALS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0227 (Fisher's exact test), Q value = 0.091

Table S8935.  Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IGFALS MUTATED 0 0 2 0 2
IGFALS WILD-TYPE 88 66 43 55 45

Figure S3294.  Get High-res Image Gene #902: 'IGFALS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PAPOLB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S8936.  Gene #903: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PAPOLB MUTATED 4 9 1 0
PAPOLB WILD-TYPE 200 128 46 3
'PAPOLB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.869 (Fisher's exact test), Q value = 0.91

Table S8937.  Gene #903: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PAPOLB MUTATED 1 5 2 2 3
PAPOLB WILD-TYPE 38 91 42 86 77
'PAPOLB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.72

Table S8938.  Gene #903: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PAPOLB MUTATED 2 3 2 2 1
PAPOLB WILD-TYPE 24 76 71 80 57
'PAPOLB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 0.92

Table S8939.  Gene #903: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PAPOLB MUTATED 3 2 3 2
PAPOLB WILD-TYPE 124 49 68 67
'PAPOLB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.837 (Fisher's exact test), Q value = 0.89

Table S8940.  Gene #903: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PAPOLB MUTATED 2 3 5 2 2
PAPOLB WILD-TYPE 82 82 80 67 45
'PAPOLB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.792 (Fisher's exact test), Q value = 0.85

Table S8941.  Gene #903: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PAPOLB MUTATED 4 4 4 2
PAPOLB WILD-TYPE 91 70 117 78
'PAPOLB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S8942.  Gene #903: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PAPOLB MUTATED 1 6 1 2 2 2
PAPOLB WILD-TYPE 51 58 71 102 38 57
'PAPOLB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 0.61

Table S8943.  Gene #903: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PAPOLB MUTATED 8 4 2
PAPOLB WILD-TYPE 209 71 97
'PAPOLB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S8944.  Gene #903: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PAPOLB MUTATED 5 2 6
PAPOLB WILD-TYPE 116 106 66
'PAPOLB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.7

Table S8945.  Gene #903: 'PAPOLB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PAPOLB MUTATED 3 3 4 2 1
PAPOLB WILD-TYPE 85 63 41 53 46
'SMAD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 0.14

Table S8946.  Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SMAD2 MUTATED 1 6 2 0
SMAD2 WILD-TYPE 203 131 45 3

Figure S3295.  Get High-res Image Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SMAD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.13

Table S8947.  Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SMAD2 MUTATED 0 4 2 0 0
SMAD2 WILD-TYPE 39 92 42 88 80

Figure S3296.  Get High-res Image Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMAD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.48

Table S8948.  Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SMAD2 MUTATED 1 3 2 0 1
SMAD2 WILD-TYPE 25 76 71 82 57
'SMAD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S8949.  Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SMAD2 MUTATED 2 2 3 0
SMAD2 WILD-TYPE 125 49 68 69
'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.11

Table S8950.  Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SMAD2 MUTATED 0 1 3 1 4
SMAD2 WILD-TYPE 84 84 82 68 43

Figure S3297.  Get High-res Image Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SMAD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00156 (Fisher's exact test), Q value = 0.02

Table S8951.  Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SMAD2 MUTATED 3 0 0 6
SMAD2 WILD-TYPE 92 74 121 74

Figure S3298.  Get High-res Image Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S8952.  Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SMAD2 MUTATED 1 4 3 1 0 0
SMAD2 WILD-TYPE 51 60 69 103 40 59
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.1

Table S8953.  Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SMAD2 MUTATED 9 0 0
SMAD2 WILD-TYPE 208 75 99

Figure S3299.  Get High-res Image Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S8954.  Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SMAD2 MUTATED 2 1 2
SMAD2 WILD-TYPE 119 107 70
'SMAD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.53

Table S8955.  Gene #904: 'SMAD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SMAD2 MUTATED 3 0 1 0 1
SMAD2 WILD-TYPE 85 66 44 55 46
'ZMYND19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00425 (Fisher's exact test), Q value = 0.035

Table S8956.  Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZMYND19 MUTATED 0 7 1 0
ZMYND19 WILD-TYPE 204 130 46 3

Figure S3300.  Get High-res Image Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZMYND19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S8957.  Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZMYND19 MUTATED 0 3 0 0 3
ZMYND19 WILD-TYPE 39 93 44 88 77
'ZMYND19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 0.56

Table S8958.  Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZMYND19 MUTATED 0 3 2 0 1
ZMYND19 WILD-TYPE 26 76 71 82 57
'ZMYND19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0598 (Fisher's exact test), Q value = 0.16

Table S8959.  Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZMYND19 MUTATED 1 3 2 0
ZMYND19 WILD-TYPE 126 48 69 69
'ZMYND19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S8960.  Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZMYND19 MUTATED 0 2 4 2 0
ZMYND19 WILD-TYPE 84 83 81 67 47
'ZMYND19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.416 (Fisher's exact test), Q value = 0.53

Table S8961.  Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZMYND19 MUTATED 4 1 1 2
ZMYND19 WILD-TYPE 91 73 120 78
'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S8962.  Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZMYND19 MUTATED 1 4 2 1 0 0
ZMYND19 WILD-TYPE 51 60 70 103 40 59
'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S8963.  Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZMYND19 MUTATED 6 1 1
ZMYND19 WILD-TYPE 211 74 98
'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S8964.  Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZMYND19 MUTATED 2 1 3
ZMYND19 WILD-TYPE 119 107 69
'ZMYND19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0285 (Fisher's exact test), Q value = 0.1

Table S8965.  Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZMYND19 MUTATED 0 1 2 0 3
ZMYND19 WILD-TYPE 88 65 43 55 44

Figure S3301.  Get High-res Image Gene #905: 'ZMYND19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'UBE2Q1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S8966.  Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UBE2Q1 MUTATED 1 5 1 0
UBE2Q1 WILD-TYPE 203 132 46 3
'UBE2Q1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 0.8

Table S8967.  Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UBE2Q1 MUTATED 0 2 0 0 1
UBE2Q1 WILD-TYPE 39 94 44 88 79
'UBE2Q1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S8968.  Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UBE2Q1 MUTATED 1 1 1 1 3
UBE2Q1 WILD-TYPE 25 78 72 81 55
'UBE2Q1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00352 (Fisher's exact test), Q value = 0.032

Table S8969.  Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UBE2Q1 MUTATED 1 5 0 1
UBE2Q1 WILD-TYPE 126 46 71 68

Figure S3302.  Get High-res Image Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UBE2Q1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S8970.  Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UBE2Q1 MUTATED 0 1 3 0 2
UBE2Q1 WILD-TYPE 84 84 82 69 45
'UBE2Q1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0516 (Fisher's exact test), Q value = 0.15

Table S8971.  Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UBE2Q1 MUTATED 0 1 1 4
UBE2Q1 WILD-TYPE 95 73 120 76
'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.18

Table S8972.  Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UBE2Q1 MUTATED 1 4 1 0 0 1
UBE2Q1 WILD-TYPE 51 60 71 104 40 58
'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S8973.  Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UBE2Q1 MUTATED 6 0 1
UBE2Q1 WILD-TYPE 211 75 98
'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S8974.  Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
UBE2Q1 MUTATED 1 0 2
UBE2Q1 WILD-TYPE 120 108 70
'UBE2Q1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0435 (Fisher's exact test), Q value = 0.13

Table S8975.  Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
UBE2Q1 MUTATED 0 0 1 0 2
UBE2Q1 WILD-TYPE 88 66 44 55 45

Figure S3303.  Get High-res Image Gene #906: 'UBE2Q1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RYR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00679 (Fisher's exact test), Q value = 0.046

Table S8976.  Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RYR2 MUTATED 29 40 8 0
RYR2 WILD-TYPE 175 97 39 3

Figure S3304.  Get High-res Image Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RYR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00125 (Fisher's exact test), Q value = 0.018

Table S8977.  Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RYR2 MUTATED 8 27 7 17 4
RYR2 WILD-TYPE 31 69 37 71 76

Figure S3305.  Get High-res Image Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RYR2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S8978.  Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RYR2 MUTATED 6 18 17 7 18
RYR2 WILD-TYPE 20 61 56 75 40

Figure S3306.  Get High-res Image Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'RYR2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S8979.  Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RYR2 MUTATED 20 25 12 9
RYR2 WILD-TYPE 107 26 59 60

Figure S3307.  Get High-res Image Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RYR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.19

Table S8980.  Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RYR2 MUTATED 12 15 26 11 8
RYR2 WILD-TYPE 72 70 59 58 39
'RYR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0079 (Fisher's exact test), Q value = 0.049

Table S8981.  Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RYR2 MUTATED 19 14 14 25
RYR2 WILD-TYPE 76 60 107 55

Figure S3308.  Get High-res Image Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RYR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0554 (Fisher's exact test), Q value = 0.15

Table S8982.  Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RYR2 MUTATED 13 21 12 16 6 8
RYR2 WILD-TYPE 39 43 60 88 34 51
'RYR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0881 (Fisher's exact test), Q value = 0.2

Table S8983.  Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RYR2 MUTATED 48 8 20
RYR2 WILD-TYPE 169 67 79
'RYR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 0.31

Table S8984.  Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RYR2 MUTATED 21 17 19
RYR2 WILD-TYPE 100 91 53
'RYR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0675 (Fisher's exact test), Q value = 0.17

Table S8985.  Gene #907: 'RYR2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RYR2 MUTATED 15 8 9 9 16
RYR2 WILD-TYPE 73 58 36 46 31
'STAU1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S8986.  Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
STAU1 MUTATED 0 10 0 0
STAU1 WILD-TYPE 204 127 47 3

Figure S3309.  Get High-res Image Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'STAU1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0246 (Fisher's exact test), Q value = 0.095

Table S8987.  Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
STAU1 MUTATED 1 5 0 0 0
STAU1 WILD-TYPE 38 91 44 88 80

Figure S3310.  Get High-res Image Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STAU1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.29

Table S8988.  Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
STAU1 MUTATED 0 3 0 2 4
STAU1 WILD-TYPE 26 76 73 80 54
'STAU1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S8989.  Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
STAU1 MUTATED 2 4 1 2
STAU1 WILD-TYPE 125 47 70 67
'STAU1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.64

Table S8990.  Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
STAU1 MUTATED 0 2 3 2 1
STAU1 WILD-TYPE 84 83 82 67 46
'STAU1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S8991.  Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
STAU1 MUTATED 3 2 0 3
STAU1 WILD-TYPE 92 72 121 77
'STAU1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00111 (Fisher's exact test), Q value = 0.017

Table S8992.  Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
STAU1 MUTATED 3 5 0 0 2 0
STAU1 WILD-TYPE 49 59 72 104 38 59

Figure S3311.  Get High-res Image Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'STAU1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 0.82

Table S8993.  Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
STAU1 MUTATED 7 1 2
STAU1 WILD-TYPE 210 74 97
'STAU1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.74

Table S8994.  Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
STAU1 MUTATED 3 1 2
STAU1 WILD-TYPE 118 107 70
'STAU1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.24 (Fisher's exact test), Q value = 0.37

Table S8995.  Gene #908: 'STAU1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
STAU1 MUTATED 4 0 1 0 1
STAU1 WILD-TYPE 84 66 44 55 46
'DLL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0317 (Fisher's exact test), Q value = 0.11

Table S8996.  Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DLL1 MUTATED 3 8 4 0
DLL1 WILD-TYPE 201 129 43 3

Figure S3312.  Get High-res Image Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DLL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S8997.  Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DLL1 MUTATED 3 5 0 2 3
DLL1 WILD-TYPE 36 91 44 86 77
'DLL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0823 (Fisher's exact test), Q value = 0.19

Table S8998.  Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DLL1 MUTATED 1 5 5 0 4
DLL1 WILD-TYPE 25 74 68 82 54
'DLL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S8999.  Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DLL1 MUTATED 4 6 3 2
DLL1 WILD-TYPE 123 45 68 67
'DLL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.836 (Fisher's exact test), Q value = 0.88

Table S9000.  Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DLL1 MUTATED 2 3 5 2 2
DLL1 WILD-TYPE 82 82 80 67 45
'DLL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.548 (Fisher's exact test), Q value = 0.65

Table S9001.  Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DLL1 MUTATED 2 3 4 5
DLL1 WILD-TYPE 93 71 117 75
'DLL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S9002.  Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DLL1 MUTATED 3 5 1 2 2 2
DLL1 WILD-TYPE 49 59 71 102 38 57
'DLL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 0.97

Table S9003.  Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DLL1 MUTATED 9 3 3
DLL1 WILD-TYPE 208 72 96
'DLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S9004.  Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DLL1 MUTATED 8 2 3
DLL1 WILD-TYPE 113 106 69
'DLL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 0.73

Table S9005.  Gene #909: 'DLL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DLL1 MUTATED 5 1 3 2 2
DLL1 WILD-TYPE 83 65 42 53 45
'E2F7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00287 (Fisher's exact test), Q value = 0.029

Table S9006.  Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
E2F7 MUTATED 4 15 1 0
E2F7 WILD-TYPE 200 122 46 3

Figure S3313.  Get High-res Image Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'E2F7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S9007.  Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
E2F7 MUTATED 1 7 5 2 2
E2F7 WILD-TYPE 38 89 39 86 78
'E2F7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.46

Table S9008.  Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
E2F7 MUTATED 1 5 5 1 4
E2F7 WILD-TYPE 25 74 68 81 54
'E2F7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.486 (Fisher's exact test), Q value = 0.6

Table S9009.  Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
E2F7 MUTATED 5 4 5 2
E2F7 WILD-TYPE 122 47 66 67
'E2F7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0548 (Fisher's exact test), Q value = 0.15

Table S9010.  Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
E2F7 MUTATED 3 5 10 1 1
E2F7 WILD-TYPE 81 80 75 68 46
'E2F7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.67

Table S9011.  Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
E2F7 MUTATED 3 5 6 6
E2F7 WILD-TYPE 92 69 115 74
'E2F7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 0.14

Table S9012.  Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
E2F7 MUTATED 4 8 2 3 0 3
E2F7 WILD-TYPE 48 56 70 101 40 56

Figure S3314.  Get High-res Image Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'E2F7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.427 (Fisher's exact test), Q value = 0.54

Table S9013.  Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
E2F7 MUTATED 14 2 4
E2F7 WILD-TYPE 203 73 95
'E2F7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S9014.  Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
E2F7 MUTATED 6 2 6
E2F7 WILD-TYPE 115 106 66
'E2F7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.65

Table S9015.  Gene #910: 'E2F7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
E2F7 MUTATED 6 1 3 2 2
E2F7 WILD-TYPE 82 65 42 53 45
'MYOCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00558 (Fisher's exact test), Q value = 0.041

Table S9016.  Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MYOCD MUTATED 3 13 1 0
MYOCD WILD-TYPE 201 124 46 3

Figure S3315.  Get High-res Image Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MYOCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0808 (Fisher's exact test), Q value = 0.19

Table S9017.  Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MYOCD MUTATED 2 5 5 1 2
MYOCD WILD-TYPE 37 91 39 87 78
'MYOCD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S9018.  Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MYOCD MUTATED 1 5 5 2 4
MYOCD WILD-TYPE 25 74 68 80 54
'MYOCD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.272 (Fisher's exact test), Q value = 0.4

Table S9019.  Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MYOCD MUTATED 4 5 5 3
MYOCD WILD-TYPE 123 46 66 66
'MYOCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S9020.  Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MYOCD MUTATED 1 3 8 2 3
MYOCD WILD-TYPE 83 82 77 67 44
'MYOCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 0.65

Table S9021.  Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MYOCD MUTATED 3 5 4 5
MYOCD WILD-TYPE 92 69 117 75
'MYOCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S9022.  Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MYOCD MUTATED 2 6 1 4 3 1
MYOCD WILD-TYPE 50 58 71 100 37 58
'MYOCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.557 (Fisher's exact test), Q value = 0.66

Table S9023.  Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MYOCD MUTATED 12 2 3
MYOCD WILD-TYPE 205 73 96
'MYOCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S9024.  Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MYOCD MUTATED 4 2 6
MYOCD WILD-TYPE 117 106 66
'MYOCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S9025.  Gene #911: 'MYOCD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MYOCD MUTATED 4 0 2 2 4
MYOCD WILD-TYPE 84 66 43 53 43
'EVI2B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.74

Table S9026.  Gene #912: 'EVI2B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EVI2B MUTATED 6 3 0 0
EVI2B WILD-TYPE 198 134 47 3
'EVI2B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.8

Table S9027.  Gene #912: 'EVI2B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EVI2B MUTATED 0 4 1 2 1
EVI2B WILD-TYPE 39 92 43 86 79
'EVI2B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.66

Table S9028.  Gene #912: 'EVI2B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EVI2B MUTATED 0 2 3 1 0
EVI2B WILD-TYPE 26 77 70 81 58
'EVI2B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 0.59

Table S9029.  Gene #912: 'EVI2B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EVI2B MUTATED 3 2 1 0
EVI2B WILD-TYPE 124 49 70 69
'EVI2B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S9030.  Gene #912: 'EVI2B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EVI2B MUTATED 2 1 2 3 0
EVI2B WILD-TYPE 82 84 83 66 47
'EVI2B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S9031.  Gene #912: 'EVI2B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EVI2B MUTATED 4 0 1 3
EVI2B WILD-TYPE 91 74 120 77
'EVI2B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.34

Table S9032.  Gene #912: 'EVI2B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EVI2B MUTATED 4 1 1 1 1 1
EVI2B WILD-TYPE 48 63 71 103 39 58
'EVI2B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S9033.  Gene #912: 'EVI2B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EVI2B MUTATED 6 0 3
EVI2B WILD-TYPE 211 75 96
'EVI2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9034.  Gene #912: 'EVI2B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EVI2B MUTATED 3 2 1
EVI2B WILD-TYPE 118 106 71
'EVI2B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S9035.  Gene #912: 'EVI2B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EVI2B MUTATED 1 0 1 2 2
EVI2B WILD-TYPE 87 66 44 53 45
'NRIP3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00387 (Fisher's exact test), Q value = 0.034

Table S9036.  Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NRIP3 MUTATED 0 7 0 0
NRIP3 WILD-TYPE 204 130 47 3

Figure S3316.  Get High-res Image Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NRIP3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.27

Table S9037.  Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NRIP3 MUTATED 1 3 0 0 0
NRIP3 WILD-TYPE 38 93 44 88 80
'NRIP3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.45

Table S9038.  Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NRIP3 MUTATED 1 2 3 0 1
NRIP3 WILD-TYPE 25 77 70 82 57
'NRIP3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0429 (Fisher's exact test), Q value = 0.13

Table S9039.  Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NRIP3 MUTATED 2 4 1 0
NRIP3 WILD-TYPE 125 47 70 69

Figure S3317.  Get High-res Image Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NRIP3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.63

Table S9040.  Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NRIP3 MUTATED 0 2 3 1 1
NRIP3 WILD-TYPE 84 83 82 68 46
'NRIP3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S9041.  Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NRIP3 MUTATED 2 2 0 3
NRIP3 WILD-TYPE 93 72 121 77
'NRIP3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0961 (Fisher's exact test), Q value = 0.21

Table S9042.  Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NRIP3 MUTATED 1 4 0 2 0 0
NRIP3 WILD-TYPE 51 60 72 102 40 59
'NRIP3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0739 (Fisher's exact test), Q value = 0.18

Table S9043.  Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NRIP3 MUTATED 7 0 0
NRIP3 WILD-TYPE 210 75 99
'NRIP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S9044.  Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NRIP3 MUTATED 2 0 2
NRIP3 WILD-TYPE 119 108 70
'NRIP3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 0.43

Table S9045.  Gene #913: 'NRIP3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NRIP3 MUTATED 3 0 1 0 0
NRIP3 WILD-TYPE 85 66 44 55 47
'ABCA7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.019

Table S9046.  Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABCA7 MUTATED 3 15 2 0
ABCA7 WILD-TYPE 201 122 45 3

Figure S3318.  Get High-res Image Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCA7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.07

Table S9047.  Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABCA7 MUTATED 4 10 1 1 2
ABCA7 WILD-TYPE 35 86 43 87 78

Figure S3319.  Get High-res Image Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCA7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 0.16

Table S9048.  Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABCA7 MUTATED 1 2 6 1 6
ABCA7 WILD-TYPE 25 77 67 81 52
'ABCA7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00595 (Fisher's exact test), Q value = 0.043

Table S9049.  Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABCA7 MUTATED 5 8 1 2
ABCA7 WILD-TYPE 122 43 70 67

Figure S3320.  Get High-res Image Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABCA7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.065 (Fisher's exact test), Q value = 0.17

Table S9050.  Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABCA7 MUTATED 1 3 8 6 1
ABCA7 WILD-TYPE 83 82 77 63 46
'ABCA7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0571 (Fisher's exact test), Q value = 0.16

Table S9051.  Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABCA7 MUTATED 6 3 2 8
ABCA7 WILD-TYPE 89 71 119 72
'ABCA7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.096 (Fisher's exact test), Q value = 0.21

Table S9052.  Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABCA7 MUTATED 5 5 6 2 1 1
ABCA7 WILD-TYPE 47 59 66 102 39 58
'ABCA7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.472 (Fisher's exact test), Q value = 0.58

Table S9053.  Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABCA7 MUTATED 14 3 3
ABCA7 WILD-TYPE 203 72 96
'ABCA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S9054.  Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABCA7 MUTATED 8 2 5
ABCA7 WILD-TYPE 113 106 67
'ABCA7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0424 (Fisher's exact test), Q value = 0.13

Table S9055.  Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABCA7 MUTATED 4 2 1 1 7
ABCA7 WILD-TYPE 84 64 44 54 40

Figure S3321.  Get High-res Image Gene #914: 'ABCA7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CWF19L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00156 (Fisher's exact test), Q value = 0.02

Table S9056.  Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CWF19L2 MUTATED 2 12 0 0
CWF19L2 WILD-TYPE 202 125 47 3

Figure S3322.  Get High-res Image Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CWF19L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 0.18

Table S9057.  Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CWF19L2 MUTATED 0 6 4 1 2
CWF19L2 WILD-TYPE 39 90 40 87 78
'CWF19L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.51

Table S9058.  Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CWF19L2 MUTATED 1 5 2 1 1
CWF19L2 WILD-TYPE 25 74 71 81 57
'CWF19L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0264 (Fisher's exact test), Q value = 0.1

Table S9059.  Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CWF19L2 MUTATED 2 4 4 0
CWF19L2 WILD-TYPE 125 47 67 69

Figure S3323.  Get High-res Image Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CWF19L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.575 (Fisher's exact test), Q value = 0.67

Table S9060.  Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CWF19L2 MUTATED 1 3 5 2 2
CWF19L2 WILD-TYPE 83 82 80 67 45
'CWF19L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S9061.  Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CWF19L2 MUTATED 4 2 2 5
CWF19L2 WILD-TYPE 91 72 119 75
'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.58

Table S9062.  Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CWF19L2 MUTATED 4 3 2 2 2 1
CWF19L2 WILD-TYPE 48 61 70 102 38 58
'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.68

Table S9063.  Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CWF19L2 MUTATED 10 2 2
CWF19L2 WILD-TYPE 207 73 97
'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.18

Table S9064.  Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CWF19L2 MUTATED 6 1 5
CWF19L2 WILD-TYPE 115 107 67
'CWF19L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0636 (Fisher's exact test), Q value = 0.17

Table S9065.  Gene #915: 'CWF19L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CWF19L2 MUTATED 4 1 2 0 5
CWF19L2 WILD-TYPE 84 65 43 55 42
'FIBP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0891 (Fisher's exact test), Q value = 0.2

Table S9066.  Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FIBP MUTATED 3 8 0 0
FIBP WILD-TYPE 201 129 47 3
'FIBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00691 (Fisher's exact test), Q value = 0.046

Table S9067.  Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FIBP MUTATED 0 8 1 0 1
FIBP WILD-TYPE 39 88 43 88 79

Figure S3324.  Get High-res Image Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FIBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0907 (Fisher's exact test), Q value = 0.2

Table S9068.  Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FIBP MUTATED 0 3 5 0 1
FIBP WILD-TYPE 26 76 68 82 57
'FIBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00072 (Fisher's exact test), Q value = 0.013

Table S9069.  Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FIBP MUTATED 1 6 2 0
FIBP WILD-TYPE 126 45 69 69

Figure S3325.  Get High-res Image Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FIBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00753 (Fisher's exact test), Q value = 0.048

Table S9070.  Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FIBP MUTATED 0 1 7 2 0
FIBP WILD-TYPE 84 84 78 67 47

Figure S3326.  Get High-res Image Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FIBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00056 (Fisher's exact test), Q value = 0.011

Table S9071.  Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FIBP MUTATED 3 0 0 7
FIBP WILD-TYPE 92 74 121 73

Figure S3327.  Get High-res Image Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FIBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00296 (Fisher's exact test), Q value = 0.029

Table S9072.  Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FIBP MUTATED 6 3 1 1 0 0
FIBP WILD-TYPE 46 61 71 103 40 59

Figure S3328.  Get High-res Image Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FIBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S9073.  Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FIBP MUTATED 9 0 2
FIBP WILD-TYPE 208 75 97
'FIBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.94

Table S9074.  Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FIBP MUTATED 4 2 2
FIBP WILD-TYPE 117 106 70
'FIBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.1

Table S9075.  Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FIBP MUTATED 2 0 2 0 4
FIBP WILD-TYPE 86 66 43 55 43

Figure S3329.  Get High-res Image Gene #916: 'FIBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PLEKHH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0023 (Fisher's exact test), Q value = 0.025

Table S9076.  Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PLEKHH3 MUTATED 0 8 2 0
PLEKHH3 WILD-TYPE 204 129 45 3

Figure S3330.  Get High-res Image Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S9077.  Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PLEKHH3 MUTATED 0 5 0 1 2
PLEKHH3 WILD-TYPE 39 91 44 87 78
'PLEKHH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.16

Table S9078.  Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PLEKHH3 MUTATED 2 4 1 0 1
PLEKHH3 WILD-TYPE 24 75 72 82 57
'PLEKHH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.34

Table S9079.  Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PLEKHH3 MUTATED 3 3 2 0
PLEKHH3 WILD-TYPE 124 48 69 69
'PLEKHH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00212 (Fisher's exact test), Q value = 0.024

Table S9080.  Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PLEKHH3 MUTATED 0 0 5 0 3
PLEKHH3 WILD-TYPE 84 85 80 69 44

Figure S3331.  Get High-res Image Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.34

Table S9081.  Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PLEKHH3 MUTATED 2 0 2 4
PLEKHH3 WILD-TYPE 93 74 119 76
'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00927 (Fisher's exact test), Q value = 0.055

Table S9082.  Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PLEKHH3 MUTATED 2 5 3 0 0 0
PLEKHH3 WILD-TYPE 50 59 69 104 40 59

Figure S3332.  Get High-res Image Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.373 (Fisher's exact test), Q value = 0.5

Table S9083.  Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PLEKHH3 MUTATED 8 1 1
PLEKHH3 WILD-TYPE 209 74 98
'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00261 (Fisher's exact test), Q value = 0.027

Table S9084.  Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PLEKHH3 MUTATED 2 0 6
PLEKHH3 WILD-TYPE 119 108 66

Figure S3333.  Get High-res Image Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PLEKHH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.13

Table S9085.  Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PLEKHH3 MUTATED 2 0 3 0 3
PLEKHH3 WILD-TYPE 86 66 42 55 44

Figure S3334.  Get High-res Image Gene #917: 'PLEKHH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'MAP7D2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 0.77

Table S9086.  Gene #918: 'MAP7D2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAP7D2 MUTATED 2 2 1 0
MAP7D2 WILD-TYPE 202 135 46 3
'MAP7D2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 0.86

Table S9087.  Gene #918: 'MAP7D2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAP7D2 MUTATED 1 1 0 1 1
MAP7D2 WILD-TYPE 38 95 44 87 79
'MAP7D2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S9088.  Gene #918: 'MAP7D2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAP7D2 MUTATED 1 1 1 0 1
MAP7D2 WILD-TYPE 25 78 72 82 57
'MAP7D2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S9089.  Gene #918: 'MAP7D2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAP7D2 MUTATED 2 2 0 0
MAP7D2 WILD-TYPE 125 49 71 69
'MAP7D2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.908 (Fisher's exact test), Q value = 0.94

Table S9090.  Gene #918: 'MAP7D2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAP7D2 MUTATED 1 1 2 0 0
MAP7D2 WILD-TYPE 83 84 83 69 47
'MAP7D2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 0.59

Table S9091.  Gene #918: 'MAP7D2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAP7D2 MUTATED 0 1 1 2
MAP7D2 WILD-TYPE 95 73 120 78
'MAP7D2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 0.7

Table S9092.  Gene #918: 'MAP7D2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAP7D2 MUTATED 1 2 0 1 0 1
MAP7D2 WILD-TYPE 51 62 72 103 40 58
'MAP7D2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S9093.  Gene #918: 'MAP7D2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAP7D2 MUTATED 2 2 1
MAP7D2 WILD-TYPE 215 73 98
'MAP7D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.57

Table S9094.  Gene #918: 'MAP7D2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAP7D2 MUTATED 2 0 1
MAP7D2 WILD-TYPE 119 108 71
'MAP7D2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S9095.  Gene #918: 'MAP7D2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAP7D2 MUTATED 0 0 0 2 1
MAP7D2 WILD-TYPE 88 66 45 53 46
'ZDHHC7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00402 (Fisher's exact test), Q value = 0.034

Table S9096.  Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZDHHC7 MUTATED 0 7 0 0
ZDHHC7 WILD-TYPE 204 130 47 3

Figure S3335.  Get High-res Image Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00602 (Fisher's exact test), Q value = 0.043

Table S9097.  Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZDHHC7 MUTATED 0 6 0 0 0
ZDHHC7 WILD-TYPE 39 90 44 88 80

Figure S3336.  Get High-res Image Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZDHHC7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S9098.  Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZDHHC7 MUTATED 0 2 2 0 1
ZDHHC7 WILD-TYPE 26 77 71 82 57
'ZDHHC7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.49

Table S9099.  Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZDHHC7 MUTATED 2 2 1 0
ZDHHC7 WILD-TYPE 125 49 70 69
'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S9100.  Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZDHHC7 MUTATED 0 1 4 2 0
ZDHHC7 WILD-TYPE 84 84 81 67 47
'ZDHHC7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S9101.  Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZDHHC7 MUTATED 3 1 0 3
ZDHHC7 WILD-TYPE 92 73 121 77
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S9102.  Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZDHHC7 MUTATED 3 2 0 2 0 0
ZDHHC7 WILD-TYPE 49 62 72 102 40 59
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.213 (Fisher's exact test), Q value = 0.35

Table S9103.  Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZDHHC7 MUTATED 6 1 0
ZDHHC7 WILD-TYPE 211 74 99
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9104.  Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZDHHC7 MUTATED 3 2 1
ZDHHC7 WILD-TYPE 118 106 71
'ZDHHC7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.668 (Fisher's exact test), Q value = 0.75

Table S9105.  Gene #919: 'ZDHHC7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZDHHC7 MUTATED 2 1 1 0 2
ZDHHC7 WILD-TYPE 86 65 44 55 45
'HTRA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.16

Table S9106.  Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HTRA2 MUTATED 1 6 0 0
HTRA2 WILD-TYPE 203 131 47 3
'HTRA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S9107.  Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HTRA2 MUTATED 0 4 3 0 0
HTRA2 WILD-TYPE 39 92 41 88 80

Figure S3337.  Get High-res Image Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HTRA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 0.51

Table S9108.  Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HTRA2 MUTATED 0 3 1 0 1
HTRA2 WILD-TYPE 26 76 72 82 57
'HTRA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S9109.  Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HTRA2 MUTATED 0 3 2 0
HTRA2 WILD-TYPE 127 48 69 69

Figure S3338.  Get High-res Image Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HTRA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0112 (Fisher's exact test), Q value = 0.06

Table S9110.  Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HTRA2 MUTATED 0 0 5 2 0
HTRA2 WILD-TYPE 84 85 80 67 47

Figure S3339.  Get High-res Image Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HTRA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.33

Table S9111.  Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HTRA2 MUTATED 3 0 1 3
HTRA2 WILD-TYPE 92 74 120 77
'HTRA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0546 (Fisher's exact test), Q value = 0.15

Table S9112.  Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HTRA2 MUTATED 3 2 2 0 0 0
HTRA2 WILD-TYPE 49 62 70 104 40 59
'HTRA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S9113.  Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HTRA2 MUTATED 6 0 1
HTRA2 WILD-TYPE 211 75 98
'HTRA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S9114.  Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HTRA2 MUTATED 3 0 2
HTRA2 WILD-TYPE 118 108 70
'HTRA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00852 (Fisher's exact test), Q value = 0.052

Table S9115.  Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HTRA2 MUTATED 0 0 2 0 3
HTRA2 WILD-TYPE 88 66 43 55 44

Figure S3340.  Get High-res Image Gene #920: 'HTRA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'INSIG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00381 (Fisher's exact test), Q value = 0.033

Table S9116.  Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
INSIG2 MUTATED 0 7 0 0
INSIG2 WILD-TYPE 204 130 47 3

Figure S3341.  Get High-res Image Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INSIG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0299 (Fisher's exact test), Q value = 0.11

Table S9117.  Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
INSIG2 MUTATED 0 5 1 0 0
INSIG2 WILD-TYPE 39 91 43 88 80

Figure S3342.  Get High-res Image Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'INSIG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S9118.  Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
INSIG2 MUTATED 0 1 4 0 1
INSIG2 WILD-TYPE 26 78 69 82 57
'INSIG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.061

Table S9119.  Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
INSIG2 MUTATED 2 4 0 0
INSIG2 WILD-TYPE 125 47 71 69

Figure S3343.  Get High-res Image Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'INSIG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.57

Table S9120.  Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
INSIG2 MUTATED 0 1 3 1 1
INSIG2 WILD-TYPE 84 84 82 68 46
'INSIG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S9121.  Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
INSIG2 MUTATED 3 1 0 2
INSIG2 WILD-TYPE 92 73 121 78
'INSIG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 0.4

Table S9122.  Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
INSIG2 MUTATED 2 3 1 1 0 0
INSIG2 WILD-TYPE 50 61 71 103 40 59
'INSIG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 0.92

Table S9123.  Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
INSIG2 MUTATED 5 1 1
INSIG2 WILD-TYPE 212 74 98
'INSIG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S9124.  Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
INSIG2 MUTATED 2 1 2
INSIG2 WILD-TYPE 119 107 70
'INSIG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S9125.  Gene #921: 'INSIG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
INSIG2 MUTATED 2 1 1 0 1
INSIG2 WILD-TYPE 86 65 44 55 46
'CLSTN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.14

Table S9126.  Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CLSTN1 MUTATED 1 6 2 0
CLSTN1 WILD-TYPE 203 131 45 3

Figure S3344.  Get High-res Image Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CLSTN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0403 (Fisher's exact test), Q value = 0.13

Table S9127.  Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CLSTN1 MUTATED 0 6 2 1 0
CLSTN1 WILD-TYPE 39 90 42 87 80

Figure S3345.  Get High-res Image Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CLSTN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S9128.  Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CLSTN1 MUTATED 0 2 2 1 4
CLSTN1 WILD-TYPE 26 77 71 81 54
'CLSTN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S9129.  Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CLSTN1 MUTATED 2 4 1 2
CLSTN1 WILD-TYPE 125 47 70 67
'CLSTN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.708 (Fisher's exact test), Q value = 0.78

Table S9130.  Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CLSTN1 MUTATED 1 2 4 1 1
CLSTN1 WILD-TYPE 83 83 81 68 46
'CLSTN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.397 (Fisher's exact test), Q value = 0.52

Table S9131.  Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CLSTN1 MUTATED 1 2 2 4
CLSTN1 WILD-TYPE 94 72 119 76
'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.13

Table S9132.  Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CLSTN1 MUTATED 3 4 2 0 0 1
CLSTN1 WILD-TYPE 49 60 70 104 40 58

Figure S3346.  Get High-res Image Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0902 (Fisher's exact test), Q value = 0.2

Table S9133.  Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CLSTN1 MUTATED 9 0 1
CLSTN1 WILD-TYPE 208 75 98
'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0326 (Fisher's exact test), Q value = 0.11

Table S9134.  Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CLSTN1 MUTATED 5 0 4
CLSTN1 WILD-TYPE 116 108 68

Figure S3347.  Get High-res Image Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CLSTN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0868 (Fisher's exact test), Q value = 0.2

Table S9135.  Gene #922: 'CLSTN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CLSTN1 MUTATED 2 0 2 1 4
CLSTN1 WILD-TYPE 86 66 43 54 43
'HNF1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0481 (Fisher's exact test), Q value = 0.14

Table S9136.  Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HNF1B MUTATED 0 3 2 0
HNF1B WILD-TYPE 204 134 45 3

Figure S3348.  Get High-res Image Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HNF1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S9137.  Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HNF1B MUTATED 0 2 2 0 0
HNF1B WILD-TYPE 39 94 42 88 80
'HNF1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.36

Table S9138.  Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HNF1B MUTATED 0 1 0 1 3
HNF1B WILD-TYPE 26 78 73 81 55
'HNF1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00165 (Fisher's exact test), Q value = 0.021

Table S9139.  Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HNF1B MUTATED 0 4 0 1
HNF1B WILD-TYPE 127 47 71 68

Figure S3349.  Get High-res Image Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HNF1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.091

Table S9140.  Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HNF1B MUTATED 0 0 4 0 1
HNF1B WILD-TYPE 84 85 81 69 46

Figure S3350.  Get High-res Image Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HNF1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S9141.  Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HNF1B MUTATED 0 1 1 3
HNF1B WILD-TYPE 95 73 120 77
'HNF1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S9142.  Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HNF1B MUTATED 1 2 2 0 0 0
HNF1B WILD-TYPE 51 62 70 104 40 59
'HNF1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 0.38

Table S9143.  Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HNF1B MUTATED 5 0 0
HNF1B WILD-TYPE 212 75 99
'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0602 (Fisher's exact test), Q value = 0.16

Table S9144.  Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HNF1B MUTATED 1 0 3
HNF1B WILD-TYPE 120 108 69
'HNF1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0221 (Fisher's exact test), Q value = 0.089

Table S9145.  Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HNF1B MUTATED 0 0 2 0 2
HNF1B WILD-TYPE 88 66 43 55 45

Figure S3351.  Get High-res Image Gene #923: 'HNF1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S9146.  Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IBTK MUTATED 2 16 0 0
IBTK WILD-TYPE 202 121 47 3

Figure S3352.  Get High-res Image Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IBTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0544 (Fisher's exact test), Q value = 0.15

Table S9147.  Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IBTK MUTATED 1 8 3 1 1
IBTK WILD-TYPE 38 88 41 87 79
'IBTK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S9148.  Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IBTK MUTATED 0 9 4 3 2
IBTK WILD-TYPE 26 70 69 79 56
'IBTK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00375 (Fisher's exact test), Q value = 0.033

Table S9149.  Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IBTK MUTATED 2 8 5 3
IBTK WILD-TYPE 125 43 66 66

Figure S3353.  Get High-res Image Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00159 (Fisher's exact test), Q value = 0.02

Table S9150.  Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IBTK MUTATED 0 4 10 1 1
IBTK WILD-TYPE 84 81 75 68 46

Figure S3354.  Get High-res Image Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IBTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0221 (Fisher's exact test), Q value = 0.089

Table S9151.  Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IBTK MUTATED 3 6 1 6
IBTK WILD-TYPE 92 68 120 74

Figure S3355.  Get High-res Image Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IBTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00224 (Fisher's exact test), Q value = 0.025

Table S9152.  Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IBTK MUTATED 3 10 2 3 1 0
IBTK WILD-TYPE 49 54 70 101 39 59

Figure S3356.  Get High-res Image Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IBTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0891 (Fisher's exact test), Q value = 0.2

Table S9153.  Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IBTK MUTATED 14 4 1
IBTK WILD-TYPE 203 71 98
'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S9154.  Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IBTK MUTATED 4 2 8
IBTK WILD-TYPE 117 106 64

Figure S3357.  Get High-res Image Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IBTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0089 (Fisher's exact test), Q value = 0.053

Table S9155.  Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IBTK MUTATED 2 2 6 0 4
IBTK WILD-TYPE 86 64 39 55 43

Figure S3358.  Get High-res Image Gene #924: 'IBTK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SALL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S9156.  Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SALL2 MUTATED 5 8 1 0
SALL2 WILD-TYPE 199 129 46 3
'SALL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00963 (Fisher's exact test), Q value = 0.056

Table S9157.  Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SALL2 MUTATED 2 9 0 3 0
SALL2 WILD-TYPE 37 87 44 85 80

Figure S3359.  Get High-res Image Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SALL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.074

Table S9158.  Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SALL2 MUTATED 0 1 8 1 3
SALL2 WILD-TYPE 26 78 65 81 55

Figure S3360.  Get High-res Image Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SALL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.07

Table S9159.  Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SALL2 MUTATED 5 6 0 2
SALL2 WILD-TYPE 122 45 71 67

Figure S3361.  Get High-res Image Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SALL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 0.8

Table S9160.  Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SALL2 MUTATED 2 2 4 4 2
SALL2 WILD-TYPE 82 83 81 65 45
'SALL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 0.16

Table S9161.  Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SALL2 MUTATED 5 2 1 6
SALL2 WILD-TYPE 90 72 120 74
'SALL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S9162.  Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SALL2 MUTATED 5 0 2 5 1 1
SALL2 WILD-TYPE 47 64 70 99 39 58
'SALL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 0.68

Table S9163.  Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SALL2 MUTATED 10 2 2
SALL2 WILD-TYPE 207 73 97
'SALL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.1

Table S9164.  Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SALL2 MUTATED 10 2 1
SALL2 WILD-TYPE 111 106 71

Figure S3362.  Get High-res Image Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SALL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 0.6

Table S9165.  Gene #925: 'SALL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SALL2 MUTATED 5 2 1 1 4
SALL2 WILD-TYPE 83 64 44 54 43
'ELMO1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00309 (Fisher's exact test), Q value = 0.03

Table S9166.  Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ELMO1 MUTATED 4 14 5 0
ELMO1 WILD-TYPE 200 123 42 3

Figure S3363.  Get High-res Image Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ELMO1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 0.34

Table S9167.  Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ELMO1 MUTATED 3 8 3 2 2
ELMO1 WILD-TYPE 36 88 41 86 78
'ELMO1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 0.17

Table S9168.  Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ELMO1 MUTATED 3 8 4 1 5
ELMO1 WILD-TYPE 23 71 69 81 53
'ELMO1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.078

Table S9169.  Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ELMO1 MUTATED 5 9 4 3
ELMO1 WILD-TYPE 122 42 67 66

Figure S3364.  Get High-res Image Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ELMO1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.063

Table S9170.  Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ELMO1 MUTATED 2 2 12 3 3
ELMO1 WILD-TYPE 82 83 73 66 44

Figure S3365.  Get High-res Image Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ELMO1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S9171.  Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ELMO1 MUTATED 4 4 5 9
ELMO1 WILD-TYPE 91 70 116 71
'ELMO1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.16

Table S9172.  Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ELMO1 MUTATED 3 9 4 3 3 1
ELMO1 WILD-TYPE 49 55 68 101 37 58
'ELMO1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0316 (Fisher's exact test), Q value = 0.11

Table S9173.  Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ELMO1 MUTATED 19 2 2
ELMO1 WILD-TYPE 198 73 97

Figure S3366.  Get High-res Image Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ELMO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 0.86

Table S9174.  Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ELMO1 MUTATED 6 5 5
ELMO1 WILD-TYPE 115 103 67
'ELMO1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S9175.  Gene #926: 'ELMO1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ELMO1 MUTATED 6 2 4 1 3
ELMO1 WILD-TYPE 82 64 41 54 44
'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00235 (Fisher's exact test), Q value = 0.025

Table S9176.  Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BRAF MUTATED 3 14 1 0
BRAF WILD-TYPE 201 123 46 3

Figure S3367.  Get High-res Image Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S9177.  Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BRAF MUTATED 0 7 5 2 1
BRAF WILD-TYPE 39 89 39 86 79

Figure S3368.  Get High-res Image Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S9178.  Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BRAF MUTATED 2 5 4 1 2
BRAF WILD-TYPE 24 74 69 81 56
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S9179.  Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BRAF MUTATED 5 4 4 1
BRAF WILD-TYPE 122 47 67 68
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00665 (Fisher's exact test), Q value = 0.045

Table S9180.  Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BRAF MUTATED 0 2 9 4 1
BRAF WILD-TYPE 84 83 76 65 46

Figure S3369.  Get High-res Image Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.33

Table S9181.  Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BRAF MUTATED 5 3 2 6
BRAF WILD-TYPE 90 71 119 74
'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0998 (Fisher's exact test), Q value = 0.22

Table S9182.  Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BRAF MUTATED 2 7 2 5 2 0
BRAF WILD-TYPE 50 57 70 99 38 59
'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0669 (Fisher's exact test), Q value = 0.17

Table S9183.  Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BRAF MUTATED 15 1 2
BRAF WILD-TYPE 202 74 97
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.62

Table S9184.  Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BRAF MUTATED 4 4 5
BRAF WILD-TYPE 117 104 67
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.445 (Fisher's exact test), Q value = 0.56

Table S9185.  Gene #927: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BRAF MUTATED 5 1 3 1 3
BRAF WILD-TYPE 83 65 42 54 44
'NFAT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0478 (Fisher's exact test), Q value = 0.14

Table S9186.  Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NFAT5 MUTATED 2 8 2 0
NFAT5 WILD-TYPE 202 129 45 3

Figure S3370.  Get High-res Image Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NFAT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0424 (Fisher's exact test), Q value = 0.13

Table S9187.  Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NFAT5 MUTATED 1 5 1 0 0
NFAT5 WILD-TYPE 38 91 43 88 80

Figure S3371.  Get High-res Image Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NFAT5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S9188.  Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NFAT5 MUTATED 0 4 2 1 4
NFAT5 WILD-TYPE 26 75 71 81 54
'NFAT5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S9189.  Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NFAT5 MUTATED 5 4 2 0
NFAT5 WILD-TYPE 122 47 69 69
'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0545 (Fisher's exact test), Q value = 0.15

Table S9190.  Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NFAT5 MUTATED 0 3 5 0 1
NFAT5 WILD-TYPE 84 82 80 69 46
'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0189 (Fisher's exact test), Q value = 0.081

Table S9191.  Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NFAT5 MUTATED 3 1 0 5
NFAT5 WILD-TYPE 92 73 121 75

Figure S3372.  Get High-res Image Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S9192.  Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NFAT5 MUTATED 0 7 1 3 0 1
NFAT5 WILD-TYPE 52 57 71 101 40 58

Figure S3373.  Get High-res Image Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0645 (Fisher's exact test), Q value = 0.17

Table S9193.  Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NFAT5 MUTATED 10 2 0
NFAT5 WILD-TYPE 207 73 99
'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.073

Table S9194.  Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NFAT5 MUTATED 0 2 4
NFAT5 WILD-TYPE 121 106 68

Figure S3374.  Get High-res Image Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S9195.  Gene #928: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NFAT5 MUTATED 0 2 2 1 1
NFAT5 WILD-TYPE 88 64 43 54 46
'ESRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.09

Table S9196.  Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ESRP2 MUTATED 1 7 0 0
ESRP2 WILD-TYPE 203 130 47 3

Figure S3375.  Get High-res Image Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ESRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0773 (Fisher's exact test), Q value = 0.19

Table S9197.  Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ESRP2 MUTATED 0 5 2 0 1
ESRP2 WILD-TYPE 39 91 42 88 79
'ESRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S9198.  Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ESRP2 MUTATED 1 2 3 0 2
ESRP2 WILD-TYPE 25 77 70 82 56
'ESRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0537 (Fisher's exact test), Q value = 0.15

Table S9199.  Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ESRP2 MUTATED 1 4 2 1
ESRP2 WILD-TYPE 126 47 69 68
'ESRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S9200.  Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ESRP2 MUTATED 0 3 4 0 1
ESRP2 WILD-TYPE 84 82 81 69 46
'ESRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S9201.  Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ESRP2 MUTATED 1 2 1 4
ESRP2 WILD-TYPE 94 72 120 76
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S9202.  Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ESRP2 MUTATED 2 3 2 1 0 0
ESRP2 WILD-TYPE 50 61 70 103 40 59
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S9203.  Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ESRP2 MUTATED 7 1 0
ESRP2 WILD-TYPE 210 74 99
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.47

Table S9204.  Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ESRP2 MUTATED 2 1 3
ESRP2 WILD-TYPE 119 107 69
'ESRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 0.72

Table S9205.  Gene #929: 'ESRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ESRP2 MUTATED 2 1 2 0 1
ESRP2 WILD-TYPE 86 65 43 55 46
'DHX36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00264 (Fisher's exact test), Q value = 0.027

Table S9206.  Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DHX36 MUTATED 4 15 1 0
DHX36 WILD-TYPE 200 122 46 3

Figure S3376.  Get High-res Image Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DHX36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0284 (Fisher's exact test), Q value = 0.1

Table S9207.  Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DHX36 MUTATED 2 8 1 0 2
DHX36 WILD-TYPE 37 88 43 88 78

Figure S3377.  Get High-res Image Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DHX36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S9208.  Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DHX36 MUTATED 2 3 4 3 5
DHX36 WILD-TYPE 24 76 69 79 53
'DHX36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0286 (Fisher's exact test), Q value = 0.1

Table S9209.  Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DHX36 MUTATED 7 7 1 2
DHX36 WILD-TYPE 120 44 70 67

Figure S3378.  Get High-res Image Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DHX36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0582 (Fisher's exact test), Q value = 0.16

Table S9210.  Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DHX36 MUTATED 0 5 6 3 4
DHX36 WILD-TYPE 84 80 79 66 43
'DHX36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00255 (Fisher's exact test), Q value = 0.027

Table S9211.  Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DHX36 MUTATED 7 4 0 7
DHX36 WILD-TYPE 88 70 121 73

Figure S3379.  Get High-res Image Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DHX36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S9212.  Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DHX36 MUTATED 3 8 3 4 1 1
DHX36 WILD-TYPE 49 56 69 100 39 58
'DHX36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0644 (Fisher's exact test), Q value = 0.17

Table S9213.  Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DHX36 MUTATED 15 4 1
DHX36 WILD-TYPE 202 71 98
'DHX36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 0.82

Table S9214.  Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DHX36 MUTATED 4 4 4
DHX36 WILD-TYPE 117 104 68
'DHX36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.566 (Fisher's exact test), Q value = 0.67

Table S9215.  Gene #930: 'DHX36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DHX36 MUTATED 2 4 2 1 3
DHX36 WILD-TYPE 86 62 43 54 44
'ZCCHC6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00813 (Fisher's exact test), Q value = 0.05

Table S9216.  Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZCCHC6 MUTATED 1 8 3 0
ZCCHC6 WILD-TYPE 203 129 44 3

Figure S3380.  Get High-res Image Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0092 (Fisher's exact test), Q value = 0.054

Table S9217.  Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZCCHC6 MUTATED 3 5 1 0 0
ZCCHC6 WILD-TYPE 36 91 43 88 80

Figure S3381.  Get High-res Image Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S9218.  Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZCCHC6 MUTATED 0 3 2 1 5
ZCCHC6 WILD-TYPE 26 76 71 81 53
'ZCCHC6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00104 (Fisher's exact test), Q value = 0.016

Table S9219.  Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZCCHC6 MUTATED 3 7 0 1
ZCCHC6 WILD-TYPE 124 44 71 68

Figure S3382.  Get High-res Image Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S9220.  Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZCCHC6 MUTATED 0 2 6 2 1
ZCCHC6 WILD-TYPE 84 83 79 67 46
'ZCCHC6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0236 (Fisher's exact test), Q value = 0.093

Table S9221.  Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZCCHC6 MUTATED 4 2 0 5
ZCCHC6 WILD-TYPE 91 72 121 75

Figure S3383.  Get High-res Image Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 0.12

Table S9222.  Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZCCHC6 MUTATED 2 6 2 1 1 0
ZCCHC6 WILD-TYPE 50 58 70 103 39 59

Figure S3384.  Get High-res Image Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00485 (Fisher's exact test), Q value = 0.038

Table S9223.  Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZCCHC6 MUTATED 12 0 0
ZCCHC6 WILD-TYPE 205 75 99

Figure S3385.  Get High-res Image Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.064

Table S9224.  Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZCCHC6 MUTATED 3 0 5
ZCCHC6 WILD-TYPE 118 108 67

Figure S3386.  Get High-res Image Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ZCCHC6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0403 (Fisher's exact test), Q value = 0.13

Table S9225.  Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZCCHC6 MUTATED 2 0 3 0 3
ZCCHC6 WILD-TYPE 86 66 42 55 44

Figure S3387.  Get High-res Image Gene #931: 'ZCCHC6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C8ORF38 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.18

Table S9226.  Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C8ORF38 MUTATED 1 6 1 0
C8ORF38 WILD-TYPE 203 131 46 3
'C8ORF38 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S9227.  Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C8ORF38 MUTATED 2 2 1 1 0
C8ORF38 WILD-TYPE 37 94 43 87 80
'C8ORF38 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.609 (Fisher's exact test), Q value = 0.7

Table S9228.  Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C8ORF38 MUTATED 0 3 2 1 0
C8ORF38 WILD-TYPE 26 76 71 81 58
'C8ORF38 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 0.48

Table S9229.  Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C8ORF38 MUTATED 1 1 3 1
C8ORF38 WILD-TYPE 126 50 68 68
'C8ORF38 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 0.96

Table S9230.  Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C8ORF38 MUTATED 1 2 3 1 1
C8ORF38 WILD-TYPE 83 83 82 68 46
'C8ORF38 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.64

Table S9231.  Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C8ORF38 MUTATED 2 2 1 3
C8ORF38 WILD-TYPE 93 72 120 77
'C8ORF38 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 0.1

Table S9232.  Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C8ORF38 MUTATED 0 4 1 0 2 1
C8ORF38 WILD-TYPE 52 60 71 104 38 58

Figure S3388.  Get High-res Image Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C8ORF38 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S9233.  Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C8ORF38 MUTATED 6 0 2
C8ORF38 WILD-TYPE 211 75 97
'C8ORF38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.89

Table S9234.  Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C8ORF38 MUTATED 3 1 1
C8ORF38 WILD-TYPE 118 107 71
'C8ORF38 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S9235.  Gene #932: 'C8ORF38 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C8ORF38 MUTATED 3 0 0 0 2
C8ORF38 WILD-TYPE 85 66 45 55 45
'NTAN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.11

Table S9236.  Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NTAN1 MUTATED 0 5 0 0
NTAN1 WILD-TYPE 204 132 47 3

Figure S3389.  Get High-res Image Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NTAN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.46

Table S9237.  Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NTAN1 MUTATED 0 3 0 0 1
NTAN1 WILD-TYPE 39 93 44 88 79
'NTAN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 0.36

Table S9238.  Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NTAN1 MUTATED 1 1 2 0 0
NTAN1 WILD-TYPE 25 78 71 82 58
'NTAN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 0.4

Table S9239.  Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NTAN1 MUTATED 1 2 1 0
NTAN1 WILD-TYPE 126 49 70 69
'NTAN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00314 (Fisher's exact test), Q value = 0.03

Table S9240.  Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NTAN1 MUTATED 0 0 5 0 0
NTAN1 WILD-TYPE 84 85 80 69 47

Figure S3390.  Get High-res Image Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NTAN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.91

Table S9241.  Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NTAN1 MUTATED 1 1 1 2
NTAN1 WILD-TYPE 94 73 120 78
'NTAN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S9242.  Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NTAN1 MUTATED 1 3 1 0 0 0
NTAN1 WILD-TYPE 51 61 71 104 40 59
'NTAN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S9243.  Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NTAN1 MUTATED 4 0 1
NTAN1 WILD-TYPE 213 75 98
'NTAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S9244.  Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NTAN1 MUTATED 1 0 2
NTAN1 WILD-TYPE 120 108 70
'NTAN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S9245.  Gene #933: 'NTAN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NTAN1 MUTATED 1 0 2 0 0
NTAN1 WILD-TYPE 87 66 43 55 47
'MLXIPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.065

Table S9246.  Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MLXIPL MUTATED 2 10 1 0
MLXIPL WILD-TYPE 202 127 46 3

Figure S3391.  Get High-res Image Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MLXIPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0702 (Fisher's exact test), Q value = 0.18

Table S9247.  Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MLXIPL MUTATED 1 6 0 0 3
MLXIPL WILD-TYPE 38 90 44 88 77
'MLXIPL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S9248.  Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MLXIPL MUTATED 1 1 4 1 4
MLXIPL WILD-TYPE 25 78 69 81 54
'MLXIPL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00556 (Fisher's exact test), Q value = 0.041

Table S9249.  Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MLXIPL MUTATED 4 6 1 0
MLXIPL WILD-TYPE 123 45 70 69

Figure S3392.  Get High-res Image Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MLXIPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 0.39

Table S9250.  Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MLXIPL MUTATED 1 3 6 1 2
MLXIPL WILD-TYPE 83 82 79 68 45
'MLXIPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S9251.  Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MLXIPL MUTATED 5 2 3 3
MLXIPL WILD-TYPE 90 72 118 77
'MLXIPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0346 (Fisher's exact test), Q value = 0.12

Table S9252.  Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MLXIPL MUTATED 3 6 0 2 1 1
MLXIPL WILD-TYPE 49 58 72 102 39 58

Figure S3393.  Get High-res Image Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MLXIPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 0.96

Table S9253.  Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MLXIPL MUTATED 7 3 3
MLXIPL WILD-TYPE 210 72 96
'MLXIPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.83 (Fisher's exact test), Q value = 0.88

Table S9254.  Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MLXIPL MUTATED 3 3 3
MLXIPL WILD-TYPE 118 105 69
'MLXIPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 0.79

Table S9255.  Gene #934: 'MLXIPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MLXIPL MUTATED 2 2 3 1 1
MLXIPL WILD-TYPE 86 64 42 54 46
'SFRS18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00021 (Fisher's exact test), Q value = 0.0062

Table S9256.  Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SFRS18 MUTATED 1 13 1 0
SFRS18 WILD-TYPE 203 124 46 3

Figure S3394.  Get High-res Image Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SFRS18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0377 (Fisher's exact test), Q value = 0.12

Table S9257.  Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SFRS18 MUTATED 1 7 2 1 0
SFRS18 WILD-TYPE 38 89 42 87 80

Figure S3395.  Get High-res Image Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SFRS18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 0.11

Table S9258.  Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SFRS18 MUTATED 0 7 4 0 2
SFRS18 WILD-TYPE 26 72 69 82 56

Figure S3396.  Get High-res Image Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SFRS18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00012 (Fisher's exact test), Q value = 0.0044

Table S9259.  Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SFRS18 MUTATED 2 8 3 0
SFRS18 WILD-TYPE 125 43 68 69

Figure S3397.  Get High-res Image Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SFRS18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.2

Table S9260.  Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SFRS18 MUTATED 1 2 7 1 3
SFRS18 WILD-TYPE 83 83 78 68 44
'SFRS18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00425 (Fisher's exact test), Q value = 0.035

Table S9261.  Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SFRS18 MUTATED 2 1 2 9
SFRS18 WILD-TYPE 93 73 119 71

Figure S3398.  Get High-res Image Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SFRS18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00129 (Fisher's exact test), Q value = 0.018

Table S9262.  Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SFRS18 MUTATED 7 5 1 1 0 1
SFRS18 WILD-TYPE 45 59 71 103 40 58

Figure S3399.  Get High-res Image Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SFRS18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00898 (Fisher's exact test), Q value = 0.053

Table S9263.  Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SFRS18 MUTATED 14 0 1
SFRS18 WILD-TYPE 203 75 98

Figure S3400.  Get High-res Image Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SFRS18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.14

Table S9264.  Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SFRS18 MUTATED 6 0 2
SFRS18 WILD-TYPE 115 108 70

Figure S3401.  Get High-res Image Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SFRS18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S9265.  Gene #935: 'SFRS18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SFRS18 MUTATED 3 0 2 0 3
SFRS18 WILD-TYPE 85 66 43 55 44
'PADI3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.19

Table S9266.  Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PADI3 MUTATED 4 9 0 0
PADI3 WILD-TYPE 200 128 47 3
'PADI3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.019

Table S9267.  Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PADI3 MUTATED 0 8 2 0 0
PADI3 WILD-TYPE 39 88 42 88 80

Figure S3402.  Get High-res Image Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PADI3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S9268.  Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PADI3 MUTATED 1 5 5 1 1
PADI3 WILD-TYPE 25 74 68 81 57
'PADI3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00605 (Fisher's exact test), Q value = 0.043

Table S9269.  Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PADI3 MUTATED 4 7 1 1
PADI3 WILD-TYPE 123 44 70 68

Figure S3403.  Get High-res Image Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PADI3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 0.13

Table S9270.  Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PADI3 MUTATED 0 2 7 2 1
PADI3 WILD-TYPE 84 83 78 67 46

Figure S3404.  Get High-res Image Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PADI3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S9271.  Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PADI3 MUTATED 4 2 1 5
PADI3 WILD-TYPE 91 72 120 75
'PADI3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 0.1

Table S9272.  Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PADI3 MUTATED 1 6 4 1 1 0
PADI3 WILD-TYPE 51 58 68 103 39 59

Figure S3405.  Get High-res Image Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PADI3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S9273.  Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PADI3 MUTATED 10 2 1
PADI3 WILD-TYPE 207 73 98
'PADI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 0.15

Table S9274.  Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PADI3 MUTATED 2 1 5
PADI3 WILD-TYPE 119 107 67
'PADI3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S9275.  Gene #936: 'PADI3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PADI3 MUTATED 2 1 3 0 2
PADI3 WILD-TYPE 86 65 42 55 45
'SLC38A6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S9276.  Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC38A6 MUTATED 2 5 1 0
SLC38A6 WILD-TYPE 202 132 46 3
'SLC38A6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0782 (Fisher's exact test), Q value = 0.19

Table S9277.  Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC38A6 MUTATED 0 5 2 0 1
SLC38A6 WILD-TYPE 39 91 42 88 79
'SLC38A6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 0.43

Table S9278.  Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC38A6 MUTATED 1 3 1 0 1
SLC38A6 WILD-TYPE 25 76 72 82 57
'SLC38A6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0593 (Fisher's exact test), Q value = 0.16

Table S9279.  Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC38A6 MUTATED 1 3 2 0
SLC38A6 WILD-TYPE 126 48 69 69
'SLC38A6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 0.025

Table S9280.  Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC38A6 MUTATED 0 0 6 1 0
SLC38A6 WILD-TYPE 84 85 79 68 47

Figure S3406.  Get High-res Image Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC38A6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S9281.  Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC38A6 MUTATED 2 0 1 4
SLC38A6 WILD-TYPE 93 74 120 76
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.48

Table S9282.  Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC38A6 MUTATED 3 2 1 2 0 0
SLC38A6 WILD-TYPE 49 62 71 102 40 59
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S9283.  Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC38A6 MUTATED 7 1 0
SLC38A6 WILD-TYPE 210 74 99
'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.12

Table S9284.  Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC38A6 MUTATED 4 0 4
SLC38A6 WILD-TYPE 117 108 68

Figure S3407.  Get High-res Image Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC38A6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 0.4

Table S9285.  Gene #937: 'SLC38A6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC38A6 MUTATED 2 1 2 0 3
SLC38A6 WILD-TYPE 86 65 43 55 44
'RGS22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.079

Table S9286.  Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RGS22 MUTATED 7 14 0 0
RGS22 WILD-TYPE 197 123 47 3

Figure S3408.  Get High-res Image Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RGS22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00987 (Fisher's exact test), Q value = 0.056

Table S9287.  Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RGS22 MUTATED 2 9 5 3 0
RGS22 WILD-TYPE 37 87 39 85 80

Figure S3409.  Get High-res Image Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RGS22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S9288.  Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RGS22 MUTATED 1 8 4 1 3
RGS22 WILD-TYPE 25 71 69 81 55
'RGS22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S9289.  Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RGS22 MUTATED 1 9 6 1
RGS22 WILD-TYPE 126 42 65 68

Figure S3410.  Get High-res Image Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RGS22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0726 (Fisher's exact test), Q value = 0.18

Table S9290.  Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RGS22 MUTATED 3 2 10 2 2
RGS22 WILD-TYPE 81 83 75 67 45
'RGS22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S9291.  Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RGS22 MUTATED 6 3 2 8
RGS22 WILD-TYPE 89 71 119 72
'RGS22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.11

Table S9292.  Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RGS22 MUTATED 4 9 1 4 1 2
RGS22 WILD-TYPE 48 55 71 100 39 57

Figure S3411.  Get High-res Image Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RGS22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 0.47

Table S9293.  Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RGS22 MUTATED 15 2 4
RGS22 WILD-TYPE 202 73 95
'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 0.17

Table S9294.  Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RGS22 MUTATED 7 3 8
RGS22 WILD-TYPE 114 105 64
'RGS22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S9295.  Gene #938: 'RGS22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RGS22 MUTATED 4 2 7 2 3
RGS22 WILD-TYPE 84 64 38 53 44
'EVI5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S9296.  Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EVI5 MUTATED 1 8 1 0
EVI5 WILD-TYPE 203 129 46 3

Figure S3412.  Get High-res Image Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EVI5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S9297.  Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EVI5 MUTATED 1 1 4 2 1
EVI5 WILD-TYPE 38 95 40 86 79
'EVI5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0154 (Fisher's exact test), Q value = 0.072

Table S9298.  Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EVI5 MUTATED 1 4 0 0 4
EVI5 WILD-TYPE 25 75 73 82 54

Figure S3413.  Get High-res Image Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EVI5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0676 (Fisher's exact test), Q value = 0.17

Table S9299.  Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EVI5 MUTATED 1 4 2 2
EVI5 WILD-TYPE 126 47 69 67
'EVI5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S9300.  Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EVI5 MUTATED 2 1 5 0 0
EVI5 WILD-TYPE 82 84 80 69 47
'EVI5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S9301.  Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EVI5 MUTATED 0 1 4 3
EVI5 WILD-TYPE 95 73 117 77
'EVI5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S9302.  Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EVI5 MUTATED 1 4 2 1 0 2
EVI5 WILD-TYPE 51 60 70 103 40 57
'EVI5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.82

Table S9303.  Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EVI5 MUTATED 7 1 2
EVI5 WILD-TYPE 210 74 97
'EVI5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0664 (Fisher's exact test), Q value = 0.17

Table S9304.  Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EVI5 MUTATED 3 1 5
EVI5 WILD-TYPE 118 107 67
'EVI5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.64

Table S9305.  Gene #939: 'EVI5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EVI5 MUTATED 2 1 3 1 2
EVI5 WILD-TYPE 86 65 42 54 45
'POU5F1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.71

Table S9306.  Gene #940: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
POU5F1B MUTATED 3 4 1 0
POU5F1B WILD-TYPE 201 133 46 3
'POU5F1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.16

Table S9307.  Gene #940: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
POU5F1B MUTATED 2 5 0 1 0
POU5F1B WILD-TYPE 37 91 44 87 80
'POU5F1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.36 (Fisher's exact test), Q value = 0.49

Table S9308.  Gene #940: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
POU5F1B MUTATED 0 2 3 0 2
POU5F1B WILD-TYPE 26 77 70 82 56
'POU5F1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.42

Table S9309.  Gene #940: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
POU5F1B MUTATED 2 3 1 1
POU5F1B WILD-TYPE 125 48 70 68
'POU5F1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S9310.  Gene #940: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
POU5F1B MUTATED 1 1 5 0 1
POU5F1B WILD-TYPE 83 84 80 69 46
'POU5F1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 0.48

Table S9311.  Gene #940: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
POU5F1B MUTATED 1 1 2 4
POU5F1B WILD-TYPE 94 73 119 76
'POU5F1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 0.95

Table S9312.  Gene #940: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
POU5F1B MUTATED 2 1 2 2 0 1
POU5F1B WILD-TYPE 50 63 70 102 40 58
'POU5F1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S9313.  Gene #940: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
POU5F1B MUTATED 6 1 1
POU5F1B WILD-TYPE 211 74 98
'POU5F1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 0.92

Table S9314.  Gene #940: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
POU5F1B MUTATED 2 2 2
POU5F1B WILD-TYPE 119 106 70
'POU5F1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9315.  Gene #940: 'POU5F1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
POU5F1B MUTATED 2 1 1 1 1
POU5F1B WILD-TYPE 86 65 44 54 46
'NEIL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0569 (Fisher's exact test), Q value = 0.16

Table S9316.  Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NEIL1 MUTATED 1 6 0 0
NEIL1 WILD-TYPE 203 131 47 3
'NEIL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.44

Table S9317.  Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NEIL1 MUTATED 0 2 2 1 0
NEIL1 WILD-TYPE 39 94 42 87 80
'NEIL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.047 (Fisher's exact test), Q value = 0.14

Table S9318.  Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NEIL1 MUTATED 2 2 3 0 0
NEIL1 WILD-TYPE 24 77 70 82 58

Figure S3414.  Get High-res Image Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NEIL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.471 (Fisher's exact test), Q value = 0.58

Table S9319.  Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NEIL1 MUTATED 3 2 2 0
NEIL1 WILD-TYPE 124 49 69 69
'NEIL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.981 (Fisher's exact test), Q value = 1

Table S9320.  Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NEIL1 MUTATED 2 2 1 1 1
NEIL1 WILD-TYPE 82 83 84 68 46
'NEIL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.187 (Fisher's exact test), Q value = 0.32

Table S9321.  Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NEIL1 MUTATED 4 0 1 2
NEIL1 WILD-TYPE 91 74 120 78
'NEIL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 0.48

Table S9322.  Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NEIL1 MUTATED 0 3 1 1 0 2
NEIL1 WILD-TYPE 52 61 71 103 40 57
'NEIL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 0.62

Table S9323.  Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NEIL1 MUTATED 5 0 2
NEIL1 WILD-TYPE 212 75 97
'NEIL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 0.66

Table S9324.  Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NEIL1 MUTATED 1 1 2
NEIL1 WILD-TYPE 120 107 70
'NEIL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S9325.  Gene #941: 'NEIL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NEIL1 MUTATED 1 0 2 1 0
NEIL1 WILD-TYPE 87 66 43 54 47
'LRRFIP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0792 (Fisher's exact test), Q value = 0.19

Table S9326.  Gene #942: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LRRFIP2 MUTATED 1 5 2 0
LRRFIP2 WILD-TYPE 203 132 45 3
'LRRFIP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S9327.  Gene #942: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LRRFIP2 MUTATED 0 4 1 1 0
LRRFIP2 WILD-TYPE 39 92 43 87 80
'LRRFIP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S9328.  Gene #942: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LRRFIP2 MUTATED 0 2 3 0 2
LRRFIP2 WILD-TYPE 26 77 70 82 56
'LRRFIP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 0.3

Table S9329.  Gene #942: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LRRFIP2 MUTATED 1 3 2 1
LRRFIP2 WILD-TYPE 126 48 69 68
'LRRFIP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S9330.  Gene #942: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LRRFIP2 MUTATED 1 0 3 1 2
LRRFIP2 WILD-TYPE 83 85 82 68 45
'LRRFIP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.31

Table S9331.  Gene #942: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LRRFIP2 MUTATED 4 0 1 2
LRRFIP2 WILD-TYPE 91 74 120 78
'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.481 (Fisher's exact test), Q value = 0.59

Table S9332.  Gene #942: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LRRFIP2 MUTATED 2 3 1 1 0 1
LRRFIP2 WILD-TYPE 50 61 71 103 40 58
'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S9333.  Gene #942: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LRRFIP2 MUTATED 6 1 1
LRRFIP2 WILD-TYPE 211 74 98
'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S9334.  Gene #942: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LRRFIP2 MUTATED 0 1 2
LRRFIP2 WILD-TYPE 121 107 70
'LRRFIP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.41 (Fisher's exact test), Q value = 0.53

Table S9335.  Gene #942: 'LRRFIP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LRRFIP2 MUTATED 0 1 1 1 0
LRRFIP2 WILD-TYPE 88 65 44 54 47
'IGDCC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 0.58

Table S9336.  Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IGDCC4 MUTATED 5 7 1 0
IGDCC4 WILD-TYPE 199 130 46 3
'IGDCC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S9337.  Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IGDCC4 MUTATED 2 4 0 1 1
IGDCC4 WILD-TYPE 37 92 44 87 79
'IGDCC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.45

Table S9338.  Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IGDCC4 MUTATED 2 2 4 1 3
IGDCC4 WILD-TYPE 24 77 69 81 55
'IGDCC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S9339.  Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IGDCC4 MUTATED 7 3 1 1
IGDCC4 WILD-TYPE 120 48 70 68
'IGDCC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.078

Table S9340.  Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IGDCC4 MUTATED 2 0 7 1 3
IGDCC4 WILD-TYPE 82 85 78 68 44

Figure S3415.  Get High-res Image Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'IGDCC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 0.36

Table S9341.  Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IGDCC4 MUTATED 3 1 3 6
IGDCC4 WILD-TYPE 92 73 118 74
'IGDCC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0342 (Fisher's exact test), Q value = 0.11

Table S9342.  Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IGDCC4 MUTATED 3 6 1 1 0 2
IGDCC4 WILD-TYPE 49 58 71 103 40 57

Figure S3416.  Get High-res Image Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IGDCC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S9343.  Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IGDCC4 MUTATED 10 2 1
IGDCC4 WILD-TYPE 207 73 98
'IGDCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.55

Table S9344.  Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IGDCC4 MUTATED 3 1 3
IGDCC4 WILD-TYPE 118 107 69
'IGDCC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.68

Table S9345.  Gene #943: 'IGDCC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IGDCC4 MUTATED 3 1 2 0 1
IGDCC4 WILD-TYPE 85 65 43 55 46
'TRPM6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.68

Table S9346.  Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TRPM6 MUTATED 9 10 2 0
TRPM6 WILD-TYPE 195 127 45 3
'TRPM6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S9347.  Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TRPM6 MUTATED 4 10 1 4 2
TRPM6 WILD-TYPE 35 86 43 84 78
'TRPM6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 0.87

Table S9348.  Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TRPM6 MUTATED 1 4 6 4 5
TRPM6 WILD-TYPE 25 75 67 78 53
'TRPM6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00919 (Fisher's exact test), Q value = 0.054

Table S9349.  Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TRPM6 MUTATED 5 9 4 2
TRPM6 WILD-TYPE 122 42 67 67

Figure S3417.  Get High-res Image Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRPM6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 0.58

Table S9350.  Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TRPM6 MUTATED 4 4 9 3 2
TRPM6 WILD-TYPE 80 81 76 66 45
'TRPM6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.45

Table S9351.  Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TRPM6 MUTATED 4 5 5 8
TRPM6 WILD-TYPE 91 69 116 72
'TRPM6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.73

Table S9352.  Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TRPM6 MUTATED 4 6 4 4 1 3
TRPM6 WILD-TYPE 48 58 68 100 39 56
'TRPM6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S9353.  Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TRPM6 MUTATED 15 1 6
TRPM6 WILD-TYPE 202 74 93
'TRPM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.095 (Fisher's exact test), Q value = 0.21

Table S9354.  Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TRPM6 MUTATED 12 3 5
TRPM6 WILD-TYPE 109 105 67
'TRPM6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 0.19

Table S9355.  Gene #944: 'TRPM6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TRPM6 MUTATED 4 1 5 4 6
TRPM6 WILD-TYPE 84 65 40 51 41
'IL1F7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S9356.  Gene #945: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IL1F7 MUTATED 0 3 0 0
IL1F7 WILD-TYPE 204 134 47 3
'IL1F7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0514 (Fisher's exact test), Q value = 0.15

Table S9357.  Gene #945: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IL1F7 MUTATED 0 1 0 0 2
IL1F7 WILD-TYPE 84 84 85 69 45
'IL1F7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S9358.  Gene #945: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IL1F7 MUTATED 1 0 0 2
IL1F7 WILD-TYPE 94 74 121 78
'IL1F7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.11

Table S9359.  Gene #945: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IL1F7 MUTATED 2 0 0 0 1 0
IL1F7 WILD-TYPE 50 64 72 104 39 59

Figure S3418.  Get High-res Image Gene #945: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IL1F7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9360.  Gene #945: 'IL1F7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IL1F7 MUTATED 2 0 1
IL1F7 WILD-TYPE 215 75 98
'BRPF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0516 (Fisher's exact test), Q value = 0.15

Table S9361.  Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BRPF3 MUTATED 2 8 1 0
BRPF3 WILD-TYPE 202 129 46 3
'BRPF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S9362.  Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BRPF3 MUTATED 2 3 3 0 0
BRPF3 WILD-TYPE 37 93 41 88 80

Figure S3419.  Get High-res Image Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRPF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.47

Table S9363.  Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BRPF3 MUTATED 1 5 1 1 2
BRPF3 WILD-TYPE 25 74 72 81 56
'BRPF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 0.31

Table S9364.  Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BRPF3 MUTATED 2 3 4 1
BRPF3 WILD-TYPE 125 48 67 68
'BRPF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.828 (Fisher's exact test), Q value = 0.88

Table S9365.  Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BRPF3 MUTATED 1 3 3 1 1
BRPF3 WILD-TYPE 83 82 82 68 46
'BRPF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S9366.  Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BRPF3 MUTATED 1 3 1 4
BRPF3 WILD-TYPE 94 71 120 76
'BRPF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S9367.  Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BRPF3 MUTATED 1 5 2 3 0 0
BRPF3 WILD-TYPE 51 59 70 101 40 59
'BRPF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0956 (Fisher's exact test), Q value = 0.21

Table S9368.  Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BRPF3 MUTATED 8 3 0
BRPF3 WILD-TYPE 209 72 99
'BRPF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S9369.  Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BRPF3 MUTATED 3 1 4
BRPF3 WILD-TYPE 118 107 68
'BRPF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S9370.  Gene #946: 'BRPF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BRPF3 MUTATED 2 2 1 0 3
BRPF3 WILD-TYPE 86 64 44 55 44
'ACACB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.012

Table S9371.  Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ACACB MUTATED 7 22 3 0
ACACB WILD-TYPE 197 115 44 3

Figure S3420.  Get High-res Image Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACACB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00583 (Fisher's exact test), Q value = 0.042

Table S9372.  Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ACACB MUTATED 1 14 6 2 4
ACACB WILD-TYPE 38 82 38 86 76

Figure S3421.  Get High-res Image Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ACACB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0431 (Fisher's exact test), Q value = 0.13

Table S9373.  Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ACACB MUTATED 1 4 9 5 11
ACACB WILD-TYPE 25 75 64 77 47

Figure S3422.  Get High-res Image Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ACACB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S9374.  Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ACACB MUTATED 3 16 4 7
ACACB WILD-TYPE 124 35 67 62

Figure S3423.  Get High-res Image Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACACB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00303 (Fisher's exact test), Q value = 0.029

Table S9375.  Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ACACB MUTATED 2 8 15 2 4
ACACB WILD-TYPE 82 77 70 67 43

Figure S3424.  Get High-res Image Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ACACB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00404 (Fisher's exact test), Q value = 0.034

Table S9376.  Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ACACB MUTATED 4 6 6 15
ACACB WILD-TYPE 91 68 115 65

Figure S3425.  Get High-res Image Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACACB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00159 (Fisher's exact test), Q value = 0.02

Table S9377.  Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ACACB MUTATED 7 12 7 4 1 1
ACACB WILD-TYPE 45 52 65 100 39 58

Figure S3426.  Get High-res Image Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ACACB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0571 (Fisher's exact test), Q value = 0.16

Table S9378.  Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ACACB MUTATED 23 6 3
ACACB WILD-TYPE 194 69 96
'ACACB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0686 (Fisher's exact test), Q value = 0.17

Table S9379.  Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ACACB MUTATED 7 5 10
ACACB WILD-TYPE 114 103 62
'ACACB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S9380.  Gene #947: 'ACACB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ACACB MUTATED 5 4 5 2 6
ACACB WILD-TYPE 83 62 40 53 41
'PIGZ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S9381.  Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PIGZ MUTATED 2 6 1 0
PIGZ WILD-TYPE 202 131 46 3
'PIGZ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0841 (Fisher's exact test), Q value = 0.2

Table S9382.  Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PIGZ MUTATED 0 5 0 1 0
PIGZ WILD-TYPE 39 91 44 87 80
'PIGZ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9383.  Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PIGZ MUTATED 0 2 2 2 1
PIGZ WILD-TYPE 26 77 71 80 57
'PIGZ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00619 (Fisher's exact test), Q value = 0.043

Table S9384.  Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PIGZ MUTATED 0 4 1 2
PIGZ WILD-TYPE 127 47 70 67

Figure S3427.  Get High-res Image Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIGZ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.45

Table S9385.  Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PIGZ MUTATED 0 2 4 1 1
PIGZ WILD-TYPE 84 83 81 68 46
'PIGZ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0805 (Fisher's exact test), Q value = 0.19

Table S9386.  Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PIGZ MUTATED 2 3 0 3
PIGZ WILD-TYPE 93 71 121 77
'PIGZ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S9387.  Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PIGZ MUTATED 2 3 2 1 1 0
PIGZ WILD-TYPE 50 61 70 103 39 59
'PIGZ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.654 (Fisher's exact test), Q value = 0.73

Table S9388.  Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PIGZ MUTATED 6 2 1
PIGZ WILD-TYPE 211 73 98
'PIGZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S9389.  Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PIGZ MUTATED 2 0 2
PIGZ WILD-TYPE 119 108 70
'PIGZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.234 (Fisher's exact test), Q value = 0.37

Table S9390.  Gene #948: 'PIGZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PIGZ MUTATED 1 0 1 0 2
PIGZ WILD-TYPE 87 66 44 55 45
'SPATA2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0269 (Fisher's exact test), Q value = 0.1

Table S9391.  Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SPATA2L MUTATED 0 5 1 0
SPATA2L WILD-TYPE 204 132 46 3

Figure S3428.  Get High-res Image Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SPATA2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S9392.  Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SPATA2L MUTATED 0 4 0 0 1
SPATA2L WILD-TYPE 39 92 44 88 79
'SPATA2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 0.88

Table S9393.  Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SPATA2L MUTATED 1 1 1 1 1
SPATA2L WILD-TYPE 25 78 72 81 57
'SPATA2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0579 (Fisher's exact test), Q value = 0.16

Table S9394.  Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SPATA2L MUTATED 1 3 0 1
SPATA2L WILD-TYPE 126 48 71 68
'SPATA2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.34

Table S9395.  Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SPATA2L MUTATED 0 2 3 0 0
SPATA2L WILD-TYPE 84 83 82 69 47
'SPATA2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.926 (Fisher's exact test), Q value = 0.96

Table S9396.  Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SPATA2L MUTATED 2 1 1 1
SPATA2L WILD-TYPE 93 73 120 79
'SPATA2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0695 (Fisher's exact test), Q value = 0.17

Table S9397.  Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SPATA2L MUTATED 0 3 2 0 1 0
SPATA2L WILD-TYPE 52 61 70 104 39 59
'SPATA2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.65

Table S9398.  Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SPATA2L MUTATED 5 0 1
SPATA2L WILD-TYPE 212 75 98
'SPATA2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00613 (Fisher's exact test), Q value = 0.043

Table S9399.  Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SPATA2L MUTATED 0 1 4
SPATA2L WILD-TYPE 121 107 68

Figure S3429.  Get High-res Image Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SPATA2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S9400.  Gene #949: 'SPATA2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SPATA2L MUTATED 1 0 2 0 2
SPATA2L WILD-TYPE 87 66 43 55 45
'SLC9A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00271 (Fisher's exact test), Q value = 0.028

Table S9401.  Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC9A1 MUTATED 1 10 0 0
SLC9A1 WILD-TYPE 203 127 47 3

Figure S3430.  Get High-res Image Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC9A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00839 (Fisher's exact test), Q value = 0.051

Table S9402.  Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC9A1 MUTATED 0 6 2 0 0
SLC9A1 WILD-TYPE 39 90 42 88 80

Figure S3431.  Get High-res Image Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC9A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 0.59

Table S9403.  Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC9A1 MUTATED 2 3 3 1 2
SLC9A1 WILD-TYPE 24 76 70 81 56
'SLC9A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S9404.  Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC9A1 MUTATED 3 4 3 1
SLC9A1 WILD-TYPE 124 47 68 68
'SLC9A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S9405.  Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC9A1 MUTATED 2 1 6 1 1
SLC9A1 WILD-TYPE 82 84 79 68 46
'SLC9A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S9406.  Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC9A1 MUTATED 3 2 1 5
SLC9A1 WILD-TYPE 92 72 120 75
'SLC9A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.41

Table S9407.  Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC9A1 MUTATED 4 3 1 2 0 2
SLC9A1 WILD-TYPE 48 61 71 102 40 57
'SLC9A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 0.95

Table S9408.  Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC9A1 MUTATED 8 2 2
SLC9A1 WILD-TYPE 209 73 97
'SLC9A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0458 (Fisher's exact test), Q value = 0.14

Table S9409.  Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC9A1 MUTATED 3 0 4
SLC9A1 WILD-TYPE 118 108 68

Figure S3432.  Get High-res Image Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC9A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.59

Table S9410.  Gene #950: 'SLC9A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC9A1 MUTATED 2 1 2 0 2
SLC9A1 WILD-TYPE 86 65 43 55 45
'PAQR9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.89 (Fisher's exact test), Q value = 0.93

Table S9411.  Gene #951: 'PAQR9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PAQR9 MUTATED 9 6 1 0
PAQR9 WILD-TYPE 195 131 46 3
'PAQR9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 0.36

Table S9412.  Gene #951: 'PAQR9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PAQR9 MUTATED 1 6 0 5 1
PAQR9 WILD-TYPE 38 90 44 83 79
'PAQR9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.85

Table S9413.  Gene #951: 'PAQR9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PAQR9 MUTATED 0 4 4 2 2
PAQR9 WILD-TYPE 26 75 69 80 56
'PAQR9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S9414.  Gene #951: 'PAQR9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PAQR9 MUTATED 5 3 3 1
PAQR9 WILD-TYPE 122 48 68 68
'PAQR9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.67

Table S9415.  Gene #951: 'PAQR9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PAQR9 MUTATED 6 3 4 1 2
PAQR9 WILD-TYPE 78 82 81 68 45
'PAQR9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 0.96

Table S9416.  Gene #951: 'PAQR9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PAQR9 MUTATED 4 2 6 4
PAQR9 WILD-TYPE 91 72 115 76
'PAQR9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 0.47

Table S9417.  Gene #951: 'PAQR9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PAQR9 MUTATED 3 3 3 1 2 4
PAQR9 WILD-TYPE 49 61 69 103 38 55
'PAQR9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S9418.  Gene #951: 'PAQR9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PAQR9 MUTATED 8 1 7
PAQR9 WILD-TYPE 209 74 92
'PAQR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.78

Table S9419.  Gene #951: 'PAQR9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PAQR9 MUTATED 6 3 3
PAQR9 WILD-TYPE 115 105 69
'PAQR9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S9420.  Gene #951: 'PAQR9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PAQR9 MUTATED 4 1 0 5 2
PAQR9 WILD-TYPE 84 65 45 50 45
'BTBD10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S9421.  Gene #952: 'BTBD10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BTBD10 MUTATED 1 3 1 0
BTBD10 WILD-TYPE 203 134 46 3
'BTBD10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.57

Table S9422.  Gene #952: 'BTBD10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BTBD10 MUTATED 1 1 0 0 1
BTBD10 WILD-TYPE 38 95 44 88 79
'BTBD10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 0.87

Table S9423.  Gene #952: 'BTBD10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BTBD10 MUTATED 1 1 1 1 1
BTBD10 WILD-TYPE 25 78 72 81 57
'BTBD10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.713 (Fisher's exact test), Q value = 0.78

Table S9424.  Gene #952: 'BTBD10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BTBD10 MUTATED 3 1 0 1
BTBD10 WILD-TYPE 124 50 71 68
'BTBD10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.61

Table S9425.  Gene #952: 'BTBD10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BTBD10 MUTATED 1 1 3 0 0
BTBD10 WILD-TYPE 83 84 82 69 47
'BTBD10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.46

Table S9426.  Gene #952: 'BTBD10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BTBD10 MUTATED 2 1 0 2
BTBD10 WILD-TYPE 93 73 121 78
'BTBD10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.912 (Fisher's exact test), Q value = 0.95

Table S9427.  Gene #952: 'BTBD10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BTBD10 MUTATED 1 1 0 2 0 1
BTBD10 WILD-TYPE 51 63 72 102 40 58
'BTBD10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9428.  Gene #952: 'BTBD10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BTBD10 MUTATED 3 1 1
BTBD10 WILD-TYPE 214 74 98
'RAB40B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0216 (Fisher's exact test), Q value = 0.088

Table S9429.  Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RAB40B MUTATED 1 7 0 0
RAB40B WILD-TYPE 203 130 47 3

Figure S3433.  Get High-res Image Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAB40B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S9430.  Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RAB40B MUTATED 0 3 1 0 1
RAB40B WILD-TYPE 39 93 43 88 79
'RAB40B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S9431.  Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RAB40B MUTATED 0 1 2 0 3
RAB40B WILD-TYPE 26 78 71 82 55
'RAB40B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00069 (Fisher's exact test), Q value = 0.013

Table S9432.  Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RAB40B MUTATED 1 5 0 0
RAB40B WILD-TYPE 126 46 71 69

Figure S3434.  Get High-res Image Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RAB40B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S9433.  Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RAB40B MUTATED 1 1 5 1 0
RAB40B WILD-TYPE 83 84 80 68 47
'RAB40B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0048 (Fisher's exact test), Q value = 0.038

Table S9434.  Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RAB40B MUTATED 3 0 0 5
RAB40B WILD-TYPE 92 74 121 75

Figure S3435.  Get High-res Image Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RAB40B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0028 (Fisher's exact test), Q value = 0.028

Table S9435.  Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RAB40B MUTATED 2 5 0 0 1 0
RAB40B WILD-TYPE 50 59 72 104 39 59

Figure S3436.  Get High-res Image Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RAB40B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S9436.  Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RAB40B MUTATED 7 0 1
RAB40B WILD-TYPE 210 75 98
'RAB40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S9437.  Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RAB40B MUTATED 2 0 2
RAB40B WILD-TYPE 119 108 70
'RAB40B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S9438.  Gene #953: 'RAB40B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RAB40B MUTATED 3 0 1 0 0
RAB40B WILD-TYPE 85 66 44 55 47
'CSNK1G3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00094 (Fisher's exact test), Q value = 0.015

Table S9439.  Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CSNK1G3 MUTATED 0 9 0 0
CSNK1G3 WILD-TYPE 204 128 47 3

Figure S3437.  Get High-res Image Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CSNK1G3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.14

Table S9440.  Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CSNK1G3 MUTATED 0 6 1 0 1
CSNK1G3 WILD-TYPE 39 90 43 88 79

Figure S3438.  Get High-res Image Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSNK1G3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S9441.  Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CSNK1G3 MUTATED 1 2 3 0 2
CSNK1G3 WILD-TYPE 25 77 70 82 56
'CSNK1G3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00931 (Fisher's exact test), Q value = 0.055

Table S9442.  Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CSNK1G3 MUTATED 2 5 1 0
CSNK1G3 WILD-TYPE 125 46 70 69

Figure S3439.  Get High-res Image Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.46

Table S9443.  Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CSNK1G3 MUTATED 0 2 4 1 1
CSNK1G3 WILD-TYPE 84 83 81 68 46
'CSNK1G3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S9444.  Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CSNK1G3 MUTATED 2 1 1 4
CSNK1G3 WILD-TYPE 93 73 120 76
'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S9445.  Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CSNK1G3 MUTATED 3 3 2 1 0 0
CSNK1G3 WILD-TYPE 49 61 70 103 40 59
'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0967 (Fisher's exact test), Q value = 0.21

Table S9446.  Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CSNK1G3 MUTATED 8 1 0
CSNK1G3 WILD-TYPE 209 74 99
'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.55

Table S9447.  Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CSNK1G3 MUTATED 3 1 3
CSNK1G3 WILD-TYPE 118 107 69
'CSNK1G3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S9448.  Gene #954: 'CSNK1G3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CSNK1G3 MUTATED 1 1 2 0 3
CSNK1G3 WILD-TYPE 87 65 43 55 44
'ITGB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 0.12

Table S9449.  Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ITGB8 MUTATED 3 10 2 0
ITGB8 WILD-TYPE 201 127 45 3

Figure S3440.  Get High-res Image Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ITGB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0387 (Fisher's exact test), Q value = 0.12

Table S9450.  Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ITGB8 MUTATED 4 5 2 2 0
ITGB8 WILD-TYPE 35 91 42 86 80

Figure S3441.  Get High-res Image Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ITGB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S9451.  Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ITGB8 MUTATED 1 4 1 1 4
ITGB8 WILD-TYPE 25 75 72 81 54
'ITGB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0966 (Fisher's exact test), Q value = 0.21

Table S9452.  Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ITGB8 MUTATED 3 5 2 1
ITGB8 WILD-TYPE 124 46 69 68
'ITGB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0884 (Fisher's exact test), Q value = 0.2

Table S9453.  Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ITGB8 MUTATED 2 1 8 3 1
ITGB8 WILD-TYPE 82 84 77 66 46
'ITGB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0292 (Fisher's exact test), Q value = 0.11

Table S9454.  Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ITGB8 MUTATED 5 2 1 7
ITGB8 WILD-TYPE 90 72 120 73

Figure S3442.  Get High-res Image Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ITGB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 0.19

Table S9455.  Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ITGB8 MUTATED 3 6 2 1 2 1
ITGB8 WILD-TYPE 49 58 70 103 38 58
'ITGB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.63

Table S9456.  Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ITGB8 MUTATED 10 1 4
ITGB8 WILD-TYPE 207 74 95
'ITGB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S9457.  Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ITGB8 MUTATED 4 2 6
ITGB8 WILD-TYPE 117 106 66
'ITGB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.065 (Fisher's exact test), Q value = 0.17

Table S9458.  Gene #955: 'ITGB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ITGB8 MUTATED 4 1 2 0 5
ITGB8 WILD-TYPE 84 65 43 55 42
'ADAMTS18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00197 (Fisher's exact test), Q value = 0.023

Table S9459.  Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ADAMTS18 MUTATED 9 19 0 0
ADAMTS18 WILD-TYPE 195 118 47 3

Figure S3443.  Get High-res Image Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ADAMTS18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S9460.  Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ADAMTS18 MUTATED 1 17 1 6 0
ADAMTS18 WILD-TYPE 38 79 43 82 80

Figure S3444.  Get High-res Image Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ADAMTS18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.7

Table S9461.  Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ADAMTS18 MUTATED 2 7 9 5 3
ADAMTS18 WILD-TYPE 24 72 64 77 55
'ADAMTS18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.34

Table S9462.  Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ADAMTS18 MUTATED 8 8 6 4
ADAMTS18 WILD-TYPE 119 43 65 65
'ADAMTS18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00075 (Fisher's exact test), Q value = 0.013

Table S9463.  Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ADAMTS18 MUTATED 5 2 16 2 3
ADAMTS18 WILD-TYPE 79 83 69 67 44

Figure S3445.  Get High-res Image Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ADAMTS18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S9464.  Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ADAMTS18 MUTATED 7 4 6 11
ADAMTS18 WILD-TYPE 88 70 115 69
'ADAMTS18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S9465.  Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ADAMTS18 MUTATED 7 7 5 4 1 5
ADAMTS18 WILD-TYPE 45 57 67 100 39 54
'ADAMTS18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S9466.  Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ADAMTS18 MUTATED 20 3 6
ADAMTS18 WILD-TYPE 197 72 93
'ADAMTS18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S9467.  Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ADAMTS18 MUTATED 10 5 8
ADAMTS18 WILD-TYPE 111 103 64
'ADAMTS18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S9468.  Gene #956: 'ADAMTS18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ADAMTS18 MUTATED 8 1 4 5 5
ADAMTS18 WILD-TYPE 80 65 41 50 42
'NPR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 0.096

Table S9469.  Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NPR3 MUTATED 1 7 2 0
NPR3 WILD-TYPE 203 130 45 3

Figure S3446.  Get High-res Image Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NPR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 0.6

Table S9470.  Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NPR3 MUTATED 2 1 1 1 2
NPR3 WILD-TYPE 37 95 43 87 78
'NPR3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S9471.  Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NPR3 MUTATED 1 4 1 0 3
NPR3 WILD-TYPE 25 75 72 82 55
'NPR3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.068

Table S9472.  Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NPR3 MUTATED 2 5 2 0
NPR3 WILD-TYPE 125 46 69 69

Figure S3447.  Get High-res Image Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NPR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 0.88

Table S9473.  Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NPR3 MUTATED 1 3 3 1 1
NPR3 WILD-TYPE 83 82 82 68 46
'NPR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 0.88

Table S9474.  Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NPR3 MUTATED 2 1 3 3
NPR3 WILD-TYPE 93 73 118 77
'NPR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.16

Table S9475.  Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NPR3 MUTATED 2 5 2 1 0 0
NPR3 WILD-TYPE 50 59 70 103 40 59
'NPR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S9476.  Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NPR3 MUTATED 8 2 0
NPR3 WILD-TYPE 209 73 99
'NPR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.74

Table S9477.  Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NPR3 MUTATED 3 1 2
NPR3 WILD-TYPE 118 107 70
'NPR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S9478.  Gene #957: 'NPR3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NPR3 MUTATED 2 1 2 0 1
NPR3 WILD-TYPE 86 65 43 55 46
'MTSS1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.002 (Fisher's exact test), Q value = 0.023

Table S9479.  Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MTSS1L MUTATED 0 8 2 0
MTSS1L WILD-TYPE 204 129 45 3

Figure S3448.  Get High-res Image Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MTSS1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00813 (Fisher's exact test), Q value = 0.05

Table S9480.  Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MTSS1L MUTATED 0 6 2 0 0
MTSS1L WILD-TYPE 39 90 42 88 80

Figure S3449.  Get High-res Image Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MTSS1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0444 (Fisher's exact test), Q value = 0.13

Table S9481.  Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MTSS1L MUTATED 0 2 2 0 5
MTSS1L WILD-TYPE 26 77 71 82 53

Figure S3450.  Get High-res Image Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MTSS1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0131 (Fisher's exact test), Q value = 0.066

Table S9482.  Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MTSS1L MUTATED 2 5 2 0
MTSS1L WILD-TYPE 125 46 69 69

Figure S3451.  Get High-res Image Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MTSS1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.052 (Fisher's exact test), Q value = 0.15

Table S9483.  Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MTSS1L MUTATED 0 1 6 2 1
MTSS1L WILD-TYPE 84 84 79 67 46
'MTSS1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.012 (Fisher's exact test), Q value = 0.063

Table S9484.  Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MTSS1L MUTATED 3 0 1 6
MTSS1L WILD-TYPE 92 74 120 74

Figure S3452.  Get High-res Image Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MTSS1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S9485.  Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MTSS1L MUTATED 3 3 2 2 0 0
MTSS1L WILD-TYPE 49 61 70 102 40 59
'MTSS1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 0.82

Table S9486.  Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MTSS1L MUTATED 7 1 2
MTSS1L WILD-TYPE 210 74 97
'MTSS1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S9487.  Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MTSS1L MUTATED 3 0 3
MTSS1L WILD-TYPE 118 108 69
'MTSS1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 0.33

Table S9488.  Gene #958: 'MTSS1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MTSS1L MUTATED 1 1 1 0 3
MTSS1L WILD-TYPE 87 65 44 55 44
'MINA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0023 (Fisher's exact test), Q value = 0.025

Table S9489.  Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MINA MUTATED 0 8 0 0
MINA WILD-TYPE 204 129 47 3

Figure S3453.  Get High-res Image Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MINA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.039 (Fisher's exact test), Q value = 0.12

Table S9490.  Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MINA MUTATED 0 4 2 0 0
MINA WILD-TYPE 39 92 42 88 80

Figure S3454.  Get High-res Image Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MINA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 0.53

Table S9491.  Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MINA MUTATED 0 2 3 0 1
MINA WILD-TYPE 26 77 70 82 57
'MINA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S9492.  Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MINA MUTATED 1 3 1 1
MINA WILD-TYPE 126 48 70 68
'MINA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S9493.  Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MINA MUTATED 0 2 3 0 1
MINA WILD-TYPE 84 83 82 69 46
'MINA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S9494.  Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MINA MUTATED 2 1 0 3
MINA WILD-TYPE 93 73 121 77
'MINA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00058 (Fisher's exact test), Q value = 0.012

Table S9495.  Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MINA MUTATED 1 6 0 0 1 0
MINA WILD-TYPE 51 58 72 104 39 59

Figure S3455.  Get High-res Image Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MINA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S9496.  Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MINA MUTATED 7 0 1
MINA WILD-TYPE 210 75 98
'MINA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.47

Table S9497.  Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MINA MUTATED 2 1 3
MINA WILD-TYPE 119 107 69
'MINA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.26 (Fisher's exact test), Q value = 0.39

Table S9498.  Gene #959: 'MINA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MINA MUTATED 3 0 2 0 1
MINA WILD-TYPE 85 66 43 55 46
'CYTH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.1

Table S9499.  Gene #960: 'CYTH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CYTH3 MUTATED 0 5 1 0
CYTH3 WILD-TYPE 204 132 46 3

Figure S3456.  Get High-res Image Gene #960: 'CYTH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CYTH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 0.87

Table S9500.  Gene #960: 'CYTH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CYTH3 MUTATED 1 1 1 1 1
CYTH3 WILD-TYPE 25 78 72 81 57
'CYTH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9501.  Gene #960: 'CYTH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CYTH3 MUTATED 2 1 1 1
CYTH3 WILD-TYPE 125 50 70 68
'CYTH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.843 (Fisher's exact test), Q value = 0.89

Table S9502.  Gene #960: 'CYTH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CYTH3 MUTATED 1 2 1 2 0
CYTH3 WILD-TYPE 83 83 84 67 47
'CYTH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0208 (Fisher's exact test), Q value = 0.086

Table S9503.  Gene #960: 'CYTH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CYTH3 MUTATED 4 2 0 0
CYTH3 WILD-TYPE 91 72 121 80

Figure S3457.  Get High-res Image Gene #960: 'CYTH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CYTH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0201 (Fisher's exact test), Q value = 0.084

Table S9504.  Gene #960: 'CYTH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CYTH3 MUTATED 0 3 0 0 2 1
CYTH3 WILD-TYPE 52 61 72 104 38 58

Figure S3458.  Get High-res Image Gene #960: 'CYTH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CYTH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S9505.  Gene #960: 'CYTH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CYTH3 MUTATED 3 0 3
CYTH3 WILD-TYPE 214 75 96
'PCDH19 MUTATION STATUS' versus 'CN_CNMF'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S9506.  Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PCDH19 MUTATED 4 21 1 0
PCDH19 WILD-TYPE 200 116 46 3

Figure S3459.  Get High-res Image Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PCDH19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00123 (Fisher's exact test), Q value = 0.018

Table S9507.  Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PCDH19 MUTATED 2 13 2 0 3
PCDH19 WILD-TYPE 37 83 42 88 77

Figure S3460.  Get High-res Image Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCDH19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.5

Table S9508.  Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PCDH19 MUTATED 0 7 4 6 7
PCDH19 WILD-TYPE 26 72 69 76 51
'PCDH19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S9509.  Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PCDH19 MUTATED 6 10 4 4
PCDH19 WILD-TYPE 121 41 67 65

Figure S3461.  Get High-res Image Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PCDH19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.0091

Table S9510.  Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PCDH19 MUTATED 0 4 14 4 4
PCDH19 WILD-TYPE 84 81 71 65 43

Figure S3462.  Get High-res Image Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PCDH19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0386 (Fisher's exact test), Q value = 0.12

Table S9511.  Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PCDH19 MUTATED 8 5 3 10
PCDH19 WILD-TYPE 87 69 118 70

Figure S3463.  Get High-res Image Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PCDH19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00412 (Fisher's exact test), Q value = 0.034

Table S9512.  Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PCDH19 MUTATED 4 11 4 4 3 0
PCDH19 WILD-TYPE 48 53 68 100 37 59

Figure S3464.  Get High-res Image Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PCDH19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.093

Table S9513.  Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PCDH19 MUTATED 21 3 2
PCDH19 WILD-TYPE 196 72 97

Figure S3465.  Get High-res Image Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PCDH19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.41

Table S9514.  Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PCDH19 MUTATED 5 6 7
PCDH19 WILD-TYPE 116 102 65
'PCDH19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S9515.  Gene #961: 'PCDH19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PCDH19 MUTATED 8 3 4 0 3
PCDH19 WILD-TYPE 80 63 41 55 44
'C11ORF88 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0571 (Fisher's exact test), Q value = 0.16

Table S9516.  Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C11ORF88 MUTATED 1 6 0 0
C11ORF88 WILD-TYPE 203 131 47 3
'C11ORF88 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.926 (Fisher's exact test), Q value = 0.96

Table S9517.  Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C11ORF88 MUTATED 1 2 1 1 1
C11ORF88 WILD-TYPE 38 94 43 87 79
'C11ORF88 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S9518.  Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C11ORF88 MUTATED 1 1 1 1 3
C11ORF88 WILD-TYPE 25 78 72 81 55
'C11ORF88 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 0.12

Table S9519.  Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C11ORF88 MUTATED 2 4 0 1
C11ORF88 WILD-TYPE 125 47 71 68

Figure S3466.  Get High-res Image Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C11ORF88 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.57

Table S9520.  Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C11ORF88 MUTATED 0 1 3 1 1
C11ORF88 WILD-TYPE 84 84 82 68 46
'C11ORF88 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S9521.  Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C11ORF88 MUTATED 1 0 2 3
C11ORF88 WILD-TYPE 94 74 119 77
'C11ORF88 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0549 (Fisher's exact test), Q value = 0.15

Table S9522.  Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C11ORF88 MUTATED 3 2 2 0 0 0
C11ORF88 WILD-TYPE 49 62 70 104 40 59
'C11ORF88 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S9523.  Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C11ORF88 MUTATED 6 0 1
C11ORF88 WILD-TYPE 211 75 98
'C11ORF88 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S9524.  Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C11ORF88 MUTATED 4 0 1
C11ORF88 WILD-TYPE 117 108 71
'C11ORF88 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S9525.  Gene #962: 'C11ORF88 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C11ORF88 MUTATED 4 0 1 0 0
C11ORF88 WILD-TYPE 84 66 44 55 47
'MON2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S9526.  Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MON2 MUTATED 0 15 1 0
MON2 WILD-TYPE 204 122 46 3

Figure S3467.  Get High-res Image Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MON2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0495 (Fisher's exact test), Q value = 0.14

Table S9527.  Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MON2 MUTATED 2 5 3 0 1
MON2 WILD-TYPE 37 91 41 88 79

Figure S3468.  Get High-res Image Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MON2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S9528.  Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MON2 MUTATED 0 6 4 4 1
MON2 WILD-TYPE 26 73 69 78 57
'MON2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S9529.  Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MON2 MUTATED 0 9 3 3
MON2 WILD-TYPE 127 42 68 66

Figure S3469.  Get High-res Image Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MON2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 0.069

Table S9530.  Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MON2 MUTATED 0 3 8 1 2
MON2 WILD-TYPE 84 82 77 68 45

Figure S3470.  Get High-res Image Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MON2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 0.33

Table S9531.  Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MON2 MUTATED 4 2 2 6
MON2 WILD-TYPE 91 72 119 74
'MON2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00017 (Fisher's exact test), Q value = 0.0054

Table S9532.  Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MON2 MUTATED 6 7 0 3 0 0
MON2 WILD-TYPE 46 57 72 101 40 59

Figure S3471.  Get High-res Image Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MON2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S9533.  Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MON2 MUTATED 10 5 1
MON2 WILD-TYPE 207 70 98
'MON2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S9534.  Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MON2 MUTATED 5 1 4
MON2 WILD-TYPE 116 107 68
'MON2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0642 (Fisher's exact test), Q value = 0.17

Table S9535.  Gene #963: 'MON2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MON2 MUTATED 2 1 4 0 3
MON2 WILD-TYPE 86 65 41 55 44
'AKD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.013

Table S9536.  Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AKD1 MUTATED 1 12 2 0
AKD1 WILD-TYPE 203 125 45 3

Figure S3472.  Get High-res Image Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AKD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.13

Table S9537.  Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AKD1 MUTATED 1 8 1 0 3
AKD1 WILD-TYPE 38 88 43 88 77

Figure S3473.  Get High-res Image Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'AKD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 0.2

Table S9538.  Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AKD1 MUTATED 1 1 6 1 4
AKD1 WILD-TYPE 25 78 67 81 54
'AKD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0025 (Fisher's exact test), Q value = 0.026

Table S9539.  Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AKD1 MUTATED 5 7 1 0
AKD1 WILD-TYPE 122 44 70 69

Figure S3474.  Get High-res Image Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AKD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00812 (Fisher's exact test), Q value = 0.05

Table S9540.  Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AKD1 MUTATED 0 2 9 2 2
AKD1 WILD-TYPE 84 83 76 67 45

Figure S3475.  Get High-res Image Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'AKD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S9541.  Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AKD1 MUTATED 4 2 2 7
AKD1 WILD-TYPE 91 72 119 73
'AKD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.04 (Fisher's exact test), Q value = 0.13

Table S9542.  Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AKD1 MUTATED 5 5 1 3 1 0
AKD1 WILD-TYPE 47 59 71 101 39 59

Figure S3476.  Get High-res Image Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'AKD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S9543.  Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AKD1 MUTATED 12 1 2
AKD1 WILD-TYPE 205 74 97
'AKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.78

Table S9544.  Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AKD1 MUTATED 6 3 3
AKD1 WILD-TYPE 115 105 69
'AKD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S9545.  Gene #964: 'AKD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AKD1 MUTATED 3 2 3 0 4
AKD1 WILD-TYPE 85 64 42 55 43
'EXOSC8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S9546.  Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EXOSC8 MUTATED 1 5 0 0
EXOSC8 WILD-TYPE 203 132 47 3
'EXOSC8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 0.46

Table S9547.  Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EXOSC8 MUTATED 0 2 1 0 0
EXOSC8 WILD-TYPE 39 94 43 88 80
'EXOSC8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S9548.  Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EXOSC8 MUTATED 0 3 1 0 1
EXOSC8 WILD-TYPE 26 76 72 82 57
'EXOSC8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.06

Table S9549.  Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EXOSC8 MUTATED 0 3 2 0
EXOSC8 WILD-TYPE 127 48 69 69

Figure S3477.  Get High-res Image Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EXOSC8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.075

Table S9550.  Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EXOSC8 MUTATED 0 1 5 0 0
EXOSC8 WILD-TYPE 84 84 80 69 47

Figure S3478.  Get High-res Image Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EXOSC8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S9551.  Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EXOSC8 MUTATED 1 1 0 4
EXOSC8 WILD-TYPE 94 73 121 76

Figure S3479.  Get High-res Image Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.19

Table S9552.  Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EXOSC8 MUTATED 0 4 1 1 0 0
EXOSC8 WILD-TYPE 52 60 71 103 40 59
'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S9553.  Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EXOSC8 MUTATED 6 0 0
EXOSC8 WILD-TYPE 211 75 99
'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.57

Table S9554.  Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EXOSC8 MUTATED 2 0 1
EXOSC8 WILD-TYPE 119 108 71
'EXOSC8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 0.63

Table S9555.  Gene #965: 'EXOSC8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EXOSC8 MUTATED 2 0 0 0 1
EXOSC8 WILD-TYPE 86 66 45 55 46
'CDH11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.78

Table S9556.  Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDH11 MUTATED 14 13 4 0
CDH11 WILD-TYPE 190 124 43 3
'CDH11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00128 (Fisher's exact test), Q value = 0.018

Table S9557.  Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDH11 MUTATED 2 15 3 8 0
CDH11 WILD-TYPE 37 81 41 80 80

Figure S3480.  Get High-res Image Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDH11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 0.87

Table S9558.  Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CDH11 MUTATED 1 7 7 5 6
CDH11 WILD-TYPE 25 72 66 77 52
'CDH11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S9559.  Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CDH11 MUTATED 9 8 4 5
CDH11 WILD-TYPE 118 43 67 64
'CDH11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S9560.  Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDH11 MUTATED 5 1 18 5 3
CDH11 WILD-TYPE 79 84 67 64 44

Figure S3481.  Get High-res Image Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CDH11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S9561.  Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDH11 MUTATED 7 4 9 12
CDH11 WILD-TYPE 88 70 112 68
'CDH11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0561 (Fisher's exact test), Q value = 0.15

Table S9562.  Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDH11 MUTATED 7 8 7 3 1 6
CDH11 WILD-TYPE 45 56 65 101 39 53
'CDH11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S9563.  Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDH11 MUTATED 21 2 9
CDH11 WILD-TYPE 196 73 90
'CDH11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.37

Table S9564.  Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDH11 MUTATED 11 6 9
CDH11 WILD-TYPE 110 102 63
'CDH11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S9565.  Gene #966: 'CDH11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDH11 MUTATED 6 2 6 5 7
CDH11 WILD-TYPE 82 64 39 50 40
'HCRTR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S9566.  Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HCRTR1 MUTATED 1 5 0 0
HCRTR1 WILD-TYPE 203 132 47 3
'HCRTR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S9567.  Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HCRTR1 MUTATED 0 3 0 0 1
HCRTR1 WILD-TYPE 39 93 44 88 79
'HCRTR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 0.83

Table S9568.  Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HCRTR1 MUTATED 0 2 0 1 1
HCRTR1 WILD-TYPE 26 77 73 81 57
'HCRTR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.11

Table S9569.  Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HCRTR1 MUTATED 0 1 3 0
HCRTR1 WILD-TYPE 127 50 68 69

Figure S3482.  Get High-res Image Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HCRTR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S9570.  Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HCRTR1 MUTATED 0 3 3 0 0
HCRTR1 WILD-TYPE 84 82 82 69 47
'HCRTR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.73

Table S9571.  Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HCRTR1 MUTATED 1 2 1 2
HCRTR1 WILD-TYPE 94 72 120 78
'HCRTR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S9572.  Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HCRTR1 MUTATED 0 3 1 1 1 0
HCRTR1 WILD-TYPE 52 61 71 103 39 59
'HCRTR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 0.9

Table S9573.  Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HCRTR1 MUTATED 3 1 2
HCRTR1 WILD-TYPE 214 74 97
'HCRTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S9574.  Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HCRTR1 MUTATED 0 2 2
HCRTR1 WILD-TYPE 121 106 70
'HCRTR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.91

Table S9575.  Gene #967: 'HCRTR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HCRTR1 MUTATED 1 1 1 0 1
HCRTR1 WILD-TYPE 87 65 44 55 46
'ANKRD12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00127 (Fisher's exact test), Q value = 0.018

Table S9576.  Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ANKRD12 MUTATED 3 15 2 0
ANKRD12 WILD-TYPE 201 122 45 3

Figure S3483.  Get High-res Image Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANKRD12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.084

Table S9577.  Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ANKRD12 MUTATED 2 11 3 1 2
ANKRD12 WILD-TYPE 37 85 41 87 78

Figure S3484.  Get High-res Image Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANKRD12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 0.22

Table S9578.  Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ANKRD12 MUTATED 1 7 2 1 5
ANKRD12 WILD-TYPE 25 72 71 81 53
'ANKRD12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S9579.  Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ANKRD12 MUTATED 1 10 4 1
ANKRD12 WILD-TYPE 126 41 67 68

Figure S3485.  Get High-res Image Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ANKRD12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S9580.  Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ANKRD12 MUTATED 1 4 8 3 3
ANKRD12 WILD-TYPE 83 81 77 66 44
'ANKRD12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S9581.  Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ANKRD12 MUTATED 3 2 1 13
ANKRD12 WILD-TYPE 92 72 120 67

Figure S3486.  Get High-res Image Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S9582.  Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ANKRD12 MUTATED 6 6 5 3 0 0
ANKRD12 WILD-TYPE 46 58 67 101 40 59

Figure S3487.  Get High-res Image Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0933 (Fisher's exact test), Q value = 0.21

Table S9583.  Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ANKRD12 MUTATED 16 2 2
ANKRD12 WILD-TYPE 201 73 97
'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 0.37

Table S9584.  Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ANKRD12 MUTATED 9 3 5
ANKRD12 WILD-TYPE 112 105 67
'ANKRD12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00481 (Fisher's exact test), Q value = 0.038

Table S9585.  Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ANKRD12 MUTATED 4 2 3 0 8
ANKRD12 WILD-TYPE 84 64 42 55 39

Figure S3488.  Get High-res Image Gene #968: 'ANKRD12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BMPR1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.034

Table S9586.  Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BMPR1B MUTATED 0 6 3 0
BMPR1B WILD-TYPE 204 131 44 3

Figure S3489.  Get High-res Image Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BMPR1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0209 (Fisher's exact test), Q value = 0.086

Table S9587.  Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BMPR1B MUTATED 0 5 2 0 0
BMPR1B WILD-TYPE 39 91 42 88 80

Figure S3490.  Get High-res Image Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BMPR1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.59

Table S9588.  Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BMPR1B MUTATED 0 1 4 1 1
BMPR1B WILD-TYPE 26 78 69 81 57
'BMPR1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.75

Table S9589.  Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BMPR1B MUTATED 2 2 1 2
BMPR1B WILD-TYPE 125 49 70 67
'BMPR1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S9590.  Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BMPR1B MUTATED 0 2 3 2 2
BMPR1B WILD-TYPE 84 83 82 67 45
'BMPR1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.23

Table S9591.  Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BMPR1B MUTATED 2 1 1 5
BMPR1B WILD-TYPE 93 73 120 75
'BMPR1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.1

Table S9592.  Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BMPR1B MUTATED 3 3 3 0 0 0
BMPR1B WILD-TYPE 49 61 69 104 40 59

Figure S3491.  Get High-res Image Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BMPR1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0274 (Fisher's exact test), Q value = 0.1

Table S9593.  Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BMPR1B MUTATED 9 0 0
BMPR1B WILD-TYPE 208 75 99

Figure S3492.  Get High-res Image Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BMPR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S9594.  Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BMPR1B MUTATED 3 0 1
BMPR1B WILD-TYPE 118 108 71
'BMPR1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 0.35

Table S9595.  Gene #969: 'BMPR1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BMPR1B MUTATED 2 0 0 0 2
BMPR1B WILD-TYPE 86 66 45 55 45
'CRYBG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00035 (Fisher's exact test), Q value = 0.0084

Table S9596.  Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CRYBG3 MUTATED 1 12 0 0
CRYBG3 WILD-TYPE 203 125 47 3

Figure S3493.  Get High-res Image Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CRYBG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00956 (Fisher's exact test), Q value = 0.055

Table S9597.  Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CRYBG3 MUTATED 2 8 3 0 1
CRYBG3 WILD-TYPE 37 88 41 88 79

Figure S3494.  Get High-res Image Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CRYBG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 0.57

Table S9598.  Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CRYBG3 MUTATED 1 4 4 1 1
CRYBG3 WILD-TYPE 25 75 69 81 57
'CRYBG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0453 (Fisher's exact test), Q value = 0.13

Table S9599.  Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CRYBG3 MUTATED 2 5 3 1
CRYBG3 WILD-TYPE 125 46 68 68

Figure S3495.  Get High-res Image Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CRYBG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 0.14

Table S9600.  Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CRYBG3 MUTATED 0 2 7 3 2
CRYBG3 WILD-TYPE 84 83 78 66 45

Figure S3496.  Get High-res Image Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CRYBG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S9601.  Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CRYBG3 MUTATED 4 2 2 6
CRYBG3 WILD-TYPE 91 72 119 74
'CRYBG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0501 (Fisher's exact test), Q value = 0.14

Table S9602.  Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CRYBG3 MUTATED 4 2 5 1 2 0
CRYBG3 WILD-TYPE 48 62 67 103 38 59
'CRYBG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.068

Table S9603.  Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CRYBG3 MUTATED 13 0 1
CRYBG3 WILD-TYPE 204 75 98

Figure S3497.  Get High-res Image Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CRYBG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.19

Table S9604.  Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CRYBG3 MUTATED 8 1 2
CRYBG3 WILD-TYPE 113 107 70
'CRYBG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0327 (Fisher's exact test), Q value = 0.11

Table S9605.  Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CRYBG3 MUTATED 5 0 2 0 4
CRYBG3 WILD-TYPE 83 66 43 55 43

Figure S3498.  Get High-res Image Gene #970: 'CRYBG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIDINS220 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0368 (Fisher's exact test), Q value = 0.12

Table S9606.  Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIDINS220 MUTATED 4 11 3 0
KIDINS220 WILD-TYPE 200 126 44 3

Figure S3499.  Get High-res Image Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIDINS220 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0636 (Fisher's exact test), Q value = 0.17

Table S9607.  Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIDINS220 MUTATED 2 8 0 2 1
KIDINS220 WILD-TYPE 37 88 44 86 79
'KIDINS220 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.13

Table S9608.  Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIDINS220 MUTATED 3 5 3 0 3
KIDINS220 WILD-TYPE 23 74 70 82 55

Figure S3500.  Get High-res Image Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KIDINS220 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S9609.  Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIDINS220 MUTATED 4 6 4 0
KIDINS220 WILD-TYPE 123 45 67 69

Figure S3501.  Get High-res Image Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIDINS220 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 0.47

Table S9610.  Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIDINS220 MUTATED 2 2 7 4 2
KIDINS220 WILD-TYPE 82 83 78 65 45
'KIDINS220 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.096

Table S9611.  Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIDINS220 MUTATED 7 1 2 7
KIDINS220 WILD-TYPE 88 73 119 73

Figure S3502.  Get High-res Image Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.066

Table S9612.  Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIDINS220 MUTATED 4 6 5 0 1 2
KIDINS220 WILD-TYPE 48 58 67 104 39 57

Figure S3503.  Get High-res Image Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0238 (Fisher's exact test), Q value = 0.093

Table S9613.  Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIDINS220 MUTATED 15 0 3
KIDINS220 WILD-TYPE 202 75 96

Figure S3504.  Get High-res Image Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0129 (Fisher's exact test), Q value = 0.065

Table S9614.  Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIDINS220 MUTATED 6 0 5
KIDINS220 WILD-TYPE 115 108 67

Figure S3505.  Get High-res Image Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIDINS220 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00121 (Fisher's exact test), Q value = 0.018

Table S9615.  Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIDINS220 MUTATED 2 0 3 0 6
KIDINS220 WILD-TYPE 86 66 42 55 41

Figure S3506.  Get High-res Image Gene #971: 'KIDINS220 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'INSM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.015

Table S9616.  Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
INSM2 MUTATED 1 11 0 0
INSM2 WILD-TYPE 203 126 47 3

Figure S3507.  Get High-res Image Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'INSM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.19

Table S9617.  Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
INSM2 MUTATED 0 7 2 1 1
INSM2 WILD-TYPE 39 89 42 87 79
'INSM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S9618.  Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
INSM2 MUTATED 1 4 5 1 0
INSM2 WILD-TYPE 25 75 68 81 58
'INSM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0717 (Fisher's exact test), Q value = 0.18

Table S9619.  Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
INSM2 MUTATED 2 5 2 2
INSM2 WILD-TYPE 125 46 69 67
'INSM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0092 (Fisher's exact test), Q value = 0.054

Table S9620.  Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
INSM2 MUTATED 0 2 6 0 3
INSM2 WILD-TYPE 84 83 79 69 44

Figure S3508.  Get High-res Image Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'INSM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S9621.  Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
INSM2 MUTATED 1 3 1 6
INSM2 WILD-TYPE 94 71 120 74

Figure S3509.  Get High-res Image Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'INSM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00419 (Fisher's exact test), Q value = 0.035

Table S9622.  Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
INSM2 MUTATED 6 2 0 2 2 0
INSM2 WILD-TYPE 46 62 72 102 38 59

Figure S3510.  Get High-res Image Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'INSM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.614 (Fisher's exact test), Q value = 0.7

Table S9623.  Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
INSM2 MUTATED 7 1 4
INSM2 WILD-TYPE 210 74 95
'INSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.509 (Fisher's exact test), Q value = 0.62

Table S9624.  Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
INSM2 MUTATED 3 3 4
INSM2 WILD-TYPE 118 105 68
'INSM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 0.73

Table S9625.  Gene #972: 'INSM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
INSM2 MUTATED 3 1 2 1 3
INSM2 WILD-TYPE 85 65 43 54 44
'ELOVL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S9626.  Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ELOVL2 MUTATED 2 5 0 0
ELOVL2 WILD-TYPE 202 132 47 3
'ELOVL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S9627.  Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ELOVL2 MUTATED 0 3 2 1 0
ELOVL2 WILD-TYPE 39 93 42 87 80
'ELOVL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S9628.  Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ELOVL2 MUTATED 0 1 3 0 2
ELOVL2 WILD-TYPE 26 78 70 82 56
'ELOVL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0153 (Fisher's exact test), Q value = 0.072

Table S9629.  Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ELOVL2 MUTATED 1 4 0 1
ELOVL2 WILD-TYPE 126 47 71 68

Figure S3511.  Get High-res Image Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ELOVL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 0.94

Table S9630.  Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ELOVL2 MUTATED 2 1 2 1 0
ELOVL2 WILD-TYPE 82 84 83 68 47
'ELOVL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9631.  Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ELOVL2 MUTATED 2 1 2 1
ELOVL2 WILD-TYPE 93 73 119 79
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 0.29

Table S9632.  Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ELOVL2 MUTATED 1 3 1 0 0 2
ELOVL2 WILD-TYPE 51 61 71 104 40 57
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.62

Table S9633.  Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ELOVL2 MUTATED 5 0 2
ELOVL2 WILD-TYPE 212 75 97
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0882 (Fisher's exact test), Q value = 0.2

Table S9634.  Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ELOVL2 MUTATED 2 0 3
ELOVL2 WILD-TYPE 119 108 69
'ELOVL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 0.58

Table S9635.  Gene #973: 'ELOVL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ELOVL2 MUTATED 2 0 1 2 0
ELOVL2 WILD-TYPE 86 66 44 53 47
'GON4L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00024 (Fisher's exact test), Q value = 0.0068

Table S9636.  Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GON4L MUTATED 0 11 1 0
GON4L WILD-TYPE 204 126 46 3

Figure S3512.  Get High-res Image Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GON4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 5e-04 (Fisher's exact test), Q value = 0.011

Table S9637.  Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GON4L MUTATED 0 9 2 0 0
GON4L WILD-TYPE 39 87 42 88 80

Figure S3513.  Get High-res Image Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GON4L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0537 (Fisher's exact test), Q value = 0.15

Table S9638.  Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GON4L MUTATED 0 4 6 1 0
GON4L WILD-TYPE 26 75 67 81 58
'GON4L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00424 (Fisher's exact test), Q value = 0.035

Table S9639.  Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GON4L MUTATED 1 6 3 1
GON4L WILD-TYPE 126 45 68 68

Figure S3514.  Get High-res Image Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GON4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 3e-04 (Fisher's exact test), Q value = 0.0078

Table S9640.  Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GON4L MUTATED 0 1 9 0 1
GON4L WILD-TYPE 84 84 76 69 46

Figure S3515.  Get High-res Image Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GON4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00182 (Fisher's exact test), Q value = 0.022

Table S9641.  Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GON4L MUTATED 1 4 0 6
GON4L WILD-TYPE 94 70 121 74

Figure S3516.  Get High-res Image Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GON4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.35

Table S9642.  Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GON4L MUTATED 2 5 2 2 1 0
GON4L WILD-TYPE 50 59 70 102 39 59
'GON4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0641 (Fisher's exact test), Q value = 0.17

Table S9643.  Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GON4L MUTATED 10 2 0
GON4L WILD-TYPE 207 73 99
'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0672 (Fisher's exact test), Q value = 0.17

Table S9644.  Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GON4L MUTATED 3 1 5
GON4L WILD-TYPE 118 107 67
'GON4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S9645.  Gene #974: 'GON4L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GON4L MUTATED 3 1 3 0 2
GON4L WILD-TYPE 85 65 42 55 45
'MSL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0491 (Fisher's exact test), Q value = 0.14

Table S9646.  Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MSL3 MUTATED 1 6 2 0
MSL3 WILD-TYPE 203 131 45 3

Figure S3517.  Get High-res Image Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MSL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.18

Table S9647.  Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MSL3 MUTATED 3 2 2 0 2
MSL3 WILD-TYPE 36 94 42 88 78
'MSL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.525 (Fisher's exact test), Q value = 0.63

Table S9648.  Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MSL3 MUTATED 1 2 1 1 3
MSL3 WILD-TYPE 25 77 72 81 55
'MSL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.45 (Fisher's exact test), Q value = 0.57

Table S9649.  Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MSL3 MUTATED 5 1 2 0
MSL3 WILD-TYPE 122 50 69 69
'MSL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.078

Table S9650.  Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MSL3 MUTATED 0 2 6 0 1
MSL3 WILD-TYPE 84 83 79 69 46

Figure S3518.  Get High-res Image Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MSL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0569 (Fisher's exact test), Q value = 0.16

Table S9651.  Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MSL3 MUTATED 0 1 3 5
MSL3 WILD-TYPE 95 73 118 75
'MSL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.484 (Fisher's exact test), Q value = 0.59

Table S9652.  Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MSL3 MUTATED 2 3 2 2 0 0
MSL3 WILD-TYPE 50 61 70 102 40 59
'MSL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S9653.  Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MSL3 MUTATED 7 2 0
MSL3 WILD-TYPE 210 73 99
'MSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 0.65

Table S9654.  Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MSL3 MUTATED 2 2 3
MSL3 WILD-TYPE 119 106 69
'MSL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.49

Table S9655.  Gene #975: 'MSL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MSL3 MUTATED 1 2 2 0 2
MSL3 WILD-TYPE 87 64 43 55 45
'FANCA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0287 (Fisher's exact test), Q value = 0.1

Table S9656.  Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FANCA MUTATED 2 9 1 0
FANCA WILD-TYPE 202 128 46 3

Figure S3519.  Get High-res Image Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FANCA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.24

Table S9657.  Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FANCA MUTATED 1 5 2 0 1
FANCA WILD-TYPE 38 91 42 88 79
'FANCA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S9658.  Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FANCA MUTATED 1 5 4 1 0
FANCA WILD-TYPE 25 74 69 81 58
'FANCA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S9659.  Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FANCA MUTATED 2 8 1 0
FANCA WILD-TYPE 125 43 70 69

Figure S3520.  Get High-res Image Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FANCA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.12

Table S9660.  Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FANCA MUTATED 1 1 7 2 0
FANCA WILD-TYPE 83 84 78 67 47

Figure S3521.  Get High-res Image Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FANCA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.257 (Fisher's exact test), Q value = 0.39

Table S9661.  Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FANCA MUTATED 4 2 1 4
FANCA WILD-TYPE 91 72 120 76
'FANCA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S9662.  Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FANCA MUTATED 1 4 2 2 2 1
FANCA WILD-TYPE 51 60 70 102 38 58
'FANCA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S9663.  Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FANCA MUTATED 10 1 1
FANCA WILD-TYPE 207 74 98
'FANCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S9664.  Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FANCA MUTATED 6 1 2
FANCA WILD-TYPE 115 107 70
'FANCA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S9665.  Gene #976: 'FANCA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FANCA MUTATED 2 1 2 0 4
FANCA WILD-TYPE 86 65 43 55 43
'SMPD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S9666.  Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SMPD1 MUTATED 0 5 1 0
SMPD1 WILD-TYPE 204 132 46 3

Figure S3522.  Get High-res Image Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SMPD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0747 (Fisher's exact test), Q value = 0.18

Table S9667.  Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SMPD1 MUTATED 2 2 0 0 0
SMPD1 WILD-TYPE 37 94 44 88 80
'SMPD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.286 (Fisher's exact test), Q value = 0.42

Table S9668.  Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SMPD1 MUTATED 0 1 3 0 2
SMPD1 WILD-TYPE 26 78 70 82 56
'SMPD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.077

Table S9669.  Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SMPD1 MUTATED 1 4 1 0
SMPD1 WILD-TYPE 126 47 70 69

Figure S3523.  Get High-res Image Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SMPD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 0.57

Table S9670.  Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SMPD1 MUTATED 0 1 3 1 1
SMPD1 WILD-TYPE 84 84 82 68 46
'SMPD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0173 (Fisher's exact test), Q value = 0.077

Table S9671.  Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SMPD1 MUTATED 2 0 0 4
SMPD1 WILD-TYPE 93 74 121 76

Figure S3524.  Get High-res Image Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMPD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 0.6

Table S9672.  Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SMPD1 MUTATED 2 2 1 1 0 0
SMPD1 WILD-TYPE 50 62 71 103 40 59
'SMPD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S9673.  Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SMPD1 MUTATED 6 0 0
SMPD1 WILD-TYPE 211 75 99
'SMPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 0.57

Table S9674.  Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SMPD1 MUTATED 3 1 0
SMPD1 WILD-TYPE 118 107 72
'SMPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S9675.  Gene #977: 'SMPD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SMPD1 MUTATED 3 0 0 0 1
SMPD1 WILD-TYPE 85 66 45 55 46
'IKBIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 0.79

Table S9676.  Gene #978: 'IKBIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IKBIP MUTATED 1 2 0 0
IKBIP WILD-TYPE 203 135 47 3
'IKBIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.31

Table S9677.  Gene #978: 'IKBIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IKBIP MUTATED 0 3 0 0 0
IKBIP WILD-TYPE 39 93 44 88 80
'IKBIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S9678.  Gene #978: 'IKBIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IKBIP MUTATED 0 0 1 0 2
IKBIP WILD-TYPE 26 79 72 82 56
'IKBIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S9679.  Gene #978: 'IKBIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IKBIP MUTATED 1 2 0 0
IKBIP WILD-TYPE 126 49 71 69
'IKBIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 0.45

Table S9680.  Gene #978: 'IKBIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IKBIP MUTATED 0 0 2 1 0
IKBIP WILD-TYPE 84 85 83 68 47
'IKBIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9681.  Gene #978: 'IKBIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IKBIP MUTATED 1 0 1 1
IKBIP WILD-TYPE 94 74 120 79
'IKBIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 0.19

Table S9682.  Gene #978: 'IKBIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IKBIP MUTATED 2 1 0 0 0 0
IKBIP WILD-TYPE 50 63 72 104 40 59
'IKBIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.68

Table S9683.  Gene #978: 'IKBIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IKBIP MUTATED 3 0 0
IKBIP WILD-TYPE 214 75 99
'IKBIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.58

Table S9684.  Gene #978: 'IKBIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IKBIP MUTATED 2 0 1
IKBIP WILD-TYPE 119 108 71
'IKBIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.568 (Fisher's exact test), Q value = 0.67

Table S9685.  Gene #978: 'IKBIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IKBIP MUTATED 1 0 1 0 1
IKBIP WILD-TYPE 87 66 44 55 46
'LEFTY1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9686.  Gene #979: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LEFTY1 MUTATED 2 1 0 0
LEFTY1 WILD-TYPE 202 136 47 3
'LEFTY1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 0.43

Table S9687.  Gene #979: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LEFTY1 MUTATED 1 2 0 0 0
LEFTY1 WILD-TYPE 38 94 44 88 80
'LEFTY1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 0.44

Table S9688.  Gene #979: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LEFTY1 MUTATED 0 0 2 0 1
LEFTY1 WILD-TYPE 26 79 71 82 57
'LEFTY1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 0.68

Table S9689.  Gene #979: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LEFTY1 MUTATED 1 1 0 1
LEFTY1 WILD-TYPE 126 50 71 68
'LEFTY1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 0.66

Table S9690.  Gene #979: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LEFTY1 MUTATED 1 0 2 0 0
LEFTY1 WILD-TYPE 83 85 83 69 47
'LEFTY1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.71

Table S9691.  Gene #979: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LEFTY1 MUTATED 0 0 2 1
LEFTY1 WILD-TYPE 95 74 119 79
'LEFTY1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S9692.  Gene #979: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LEFTY1 MUTATED 2 0 0 1 0 0
LEFTY1 WILD-TYPE 50 64 72 103 40 59
'LEFTY1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.763 (Fisher's exact test), Q value = 0.83

Table S9693.  Gene #979: 'LEFTY1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LEFTY1 MUTATED 2 1 0
LEFTY1 WILD-TYPE 215 74 99
'PIWIL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-04 (Fisher's exact test), Q value = 0.013

Table S9694.  Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PIWIL2 MUTATED 0 9 0 0
PIWIL2 WILD-TYPE 204 128 47 3

Figure S3525.  Get High-res Image Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIWIL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.13

Table S9695.  Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PIWIL2 MUTATED 0 6 0 0 2
PIWIL2 WILD-TYPE 39 90 44 88 78

Figure S3526.  Get High-res Image Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PIWIL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 0.82

Table S9696.  Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PIWIL2 MUTATED 1 3 2 1 1
PIWIL2 WILD-TYPE 25 76 71 81 57
'PIWIL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S9697.  Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PIWIL2 MUTATED 2 3 2 1
PIWIL2 WILD-TYPE 125 48 69 68
'PIWIL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0078 (Fisher's exact test), Q value = 0.049

Table S9698.  Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PIWIL2 MUTATED 0 0 5 1 3
PIWIL2 WILD-TYPE 84 85 80 68 44

Figure S3527.  Get High-res Image Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIWIL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0888 (Fisher's exact test), Q value = 0.2

Table S9699.  Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PIWIL2 MUTATED 1 2 1 5
PIWIL2 WILD-TYPE 94 72 120 75
'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.1

Table S9700.  Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PIWIL2 MUTATED 4 2 2 0 1 0
PIWIL2 WILD-TYPE 48 62 70 104 39 59

Figure S3528.  Get High-res Image Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0995 (Fisher's exact test), Q value = 0.22

Table S9701.  Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PIWIL2 MUTATED 8 1 0
PIWIL2 WILD-TYPE 209 74 99
'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0485 (Fisher's exact test), Q value = 0.14

Table S9702.  Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PIWIL2 MUTATED 6 0 2
PIWIL2 WILD-TYPE 115 108 70

Figure S3529.  Get High-res Image Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PIWIL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0078 (Fisher's exact test), Q value = 0.049

Table S9703.  Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PIWIL2 MUTATED 2 0 1 0 5
PIWIL2 WILD-TYPE 86 66 44 55 42

Figure S3530.  Get High-res Image Gene #980: 'PIWIL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00608 (Fisher's exact test), Q value = 0.043

Table S9704.  Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF7 MUTATED 0 6 2 0
ZNF7 WILD-TYPE 204 131 45 3

Figure S3531.  Get High-res Image Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.089 (Fisher's exact test), Q value = 0.2

Table S9705.  Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF7 MUTATED 1 5 0 0 1
ZNF7 WILD-TYPE 38 91 44 88 79
'ZNF7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S9706.  Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF7 MUTATED 1 1 3 0 1
ZNF7 WILD-TYPE 25 78 70 82 57
'ZNF7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S9707.  Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF7 MUTATED 2 3 1 0
ZNF7 WILD-TYPE 125 48 70 69
'ZNF7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.086

Table S9708.  Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF7 MUTATED 0 0 5 2 2
ZNF7 WILD-TYPE 84 85 80 67 45

Figure S3532.  Get High-res Image Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.243 (Fisher's exact test), Q value = 0.37

Table S9709.  Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF7 MUTATED 3 1 1 4
ZNF7 WILD-TYPE 92 73 120 76
'ZNF7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0133 (Fisher's exact test), Q value = 0.066

Table S9710.  Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF7 MUTATED 4 3 1 0 1 0
ZNF7 WILD-TYPE 48 61 71 104 39 59

Figure S3533.  Get High-res Image Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0284 (Fisher's exact test), Q value = 0.1

Table S9711.  Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF7 MUTATED 9 0 0
ZNF7 WILD-TYPE 208 75 99

Figure S3534.  Get High-res Image Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZNF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S9712.  Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF7 MUTATED 4 0 2
ZNF7 WILD-TYPE 117 108 70
'ZNF7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0132 (Fisher's exact test), Q value = 0.066

Table S9713.  Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF7 MUTATED 1 0 1 0 4
ZNF7 WILD-TYPE 87 66 44 55 43

Figure S3535.  Get High-res Image Gene #981: 'ZNF7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CHST4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S9714.  Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CHST4 MUTATED 1 5 1 0
CHST4 WILD-TYPE 203 132 46 3
'CHST4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 0.025

Table S9715.  Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CHST4 MUTATED 0 7 0 0 0
CHST4 WILD-TYPE 39 89 44 88 80

Figure S3536.  Get High-res Image Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CHST4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.53

Table S9716.  Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CHST4 MUTATED 0 1 2 0 2
CHST4 WILD-TYPE 26 78 71 82 56
'CHST4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00233 (Fisher's exact test), Q value = 0.025

Table S9717.  Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CHST4 MUTATED 0 4 1 0
CHST4 WILD-TYPE 127 47 70 69

Figure S3537.  Get High-res Image Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHST4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 0.56

Table S9718.  Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CHST4 MUTATED 0 1 3 2 1
CHST4 WILD-TYPE 84 84 82 67 46
'CHST4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S9719.  Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CHST4 MUTATED 3 1 0 3
CHST4 WILD-TYPE 92 73 121 77
'CHST4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.1

Table S9720.  Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CHST4 MUTATED 4 0 2 1 0 0
CHST4 WILD-TYPE 48 64 70 103 40 59

Figure S3538.  Get High-res Image Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CHST4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S9721.  Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CHST4 MUTATED 6 1 0
CHST4 WILD-TYPE 211 74 99
'CHST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.659 (Fisher's exact test), Q value = 0.74

Table S9722.  Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CHST4 MUTATED 3 1 2
CHST4 WILD-TYPE 118 107 70
'CHST4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.011

Table S9723.  Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CHST4 MUTATED 0 1 0 0 5
CHST4 WILD-TYPE 88 65 45 55 42

Figure S3539.  Get High-res Image Gene #982: 'CHST4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SCGB1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 0.78

Table S9724.  Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SCGB1A1 MUTATED 1 2 0 0
SCGB1A1 WILD-TYPE 203 135 47 3
'SCGB1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.31

Table S9725.  Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SCGB1A1 MUTATED 0 3 0 0 0
SCGB1A1 WILD-TYPE 39 93 44 88 80
'SCGB1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.67

Table S9726.  Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SCGB1A1 MUTATED 0 2 1 0 0
SCGB1A1 WILD-TYPE 26 77 72 82 58
'SCGB1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00383 (Fisher's exact test), Q value = 0.033

Table S9727.  Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SCGB1A1 MUTATED 0 3 0 0
SCGB1A1 WILD-TYPE 127 48 71 69

Figure S3540.  Get High-res Image Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SCGB1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 0.29

Table S9728.  Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SCGB1A1 MUTATED 0 0 2 0 1
SCGB1A1 WILD-TYPE 84 85 83 69 46
'SCGB1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0175 (Fisher's exact test), Q value = 0.078

Table S9729.  Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SCGB1A1 MUTATED 0 0 0 3
SCGB1A1 WILD-TYPE 95 74 121 77

Figure S3541.  Get High-res Image Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SCGB1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0978 (Fisher's exact test), Q value = 0.21

Table S9730.  Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SCGB1A1 MUTATED 2 0 1 0 0 0
SCGB1A1 WILD-TYPE 50 64 71 104 40 59
'SCGB1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S9731.  Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SCGB1A1 MUTATED 3 0 0
SCGB1A1 WILD-TYPE 214 75 99
'SCGB1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.31

Table S9732.  Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SCGB1A1 MUTATED 3 0 0
SCGB1A1 WILD-TYPE 118 108 72
'SCGB1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00691 (Fisher's exact test), Q value = 0.046

Table S9733.  Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SCGB1A1 MUTATED 0 0 0 0 3
SCGB1A1 WILD-TYPE 88 66 45 55 44

Figure S3542.  Get High-res Image Gene #983: 'SCGB1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZIM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0893 (Fisher's exact test), Q value = 0.2

Table S9734.  Gene #984: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZIM3 MUTATED 3 8 0 0
ZIM3 WILD-TYPE 201 129 47 3
'ZIM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 0.88

Table S9735.  Gene #984: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZIM3 MUTATED 0 3 1 3 1
ZIM3 WILD-TYPE 39 93 43 85 79
'ZIM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.377 (Fisher's exact test), Q value = 0.5

Table S9736.  Gene #984: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZIM3 MUTATED 1 3 1 4 0
ZIM3 WILD-TYPE 25 76 72 78 58
'ZIM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S9737.  Gene #984: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZIM3 MUTATED 2 2 1 4
ZIM3 WILD-TYPE 125 49 70 65
'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 0.98

Table S9738.  Gene #984: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZIM3 MUTATED 2 3 3 1 1
ZIM3 WILD-TYPE 82 82 82 68 46
'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S9739.  Gene #984: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZIM3 MUTATED 2 5 2 1
ZIM3 WILD-TYPE 93 69 119 79
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S9740.  Gene #984: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZIM3 MUTATED 1 4 0 3 1 2
ZIM3 WILD-TYPE 51 60 72 101 39 57
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9741.  Gene #984: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZIM3 MUTATED 6 2 3
ZIM3 WILD-TYPE 211 73 96
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S9742.  Gene #984: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZIM3 MUTATED 1 3 4
ZIM3 WILD-TYPE 120 105 68
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 0.91

Table S9743.  Gene #984: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZIM3 MUTATED 2 1 2 2 1
ZIM3 WILD-TYPE 86 65 43 53 46
'ACTG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.29

Table S9744.  Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ACTG2 MUTATED 3 7 0 0
ACTG2 WILD-TYPE 201 130 47 3
'ACTG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.615 (Fisher's exact test), Q value = 0.71

Table S9745.  Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ACTG2 MUTATED 0 2 2 1 1
ACTG2 WILD-TYPE 39 94 42 87 79
'ACTG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0215 (Fisher's exact test), Q value = 0.088

Table S9746.  Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ACTG2 MUTATED 0 3 0 0 4
ACTG2 WILD-TYPE 26 76 73 82 54

Figure S3543.  Get High-res Image Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ACTG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S9747.  Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ACTG2 MUTATED 2 3 2 0
ACTG2 WILD-TYPE 125 48 69 69
'ACTG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.67

Table S9748.  Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ACTG2 MUTATED 2 3 1 3 0
ACTG2 WILD-TYPE 82 82 84 66 47
'ACTG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.37

Table S9749.  Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ACTG2 MUTATED 4 0 2 3
ACTG2 WILD-TYPE 91 74 119 77
'ACTG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.058

Table S9750.  Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ACTG2 MUTATED 1 6 1 0 1 1
ACTG2 WILD-TYPE 51 58 71 104 39 58

Figure S3544.  Get High-res Image Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ACTG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S9751.  Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ACTG2 MUTATED 6 0 4
ACTG2 WILD-TYPE 211 75 95
'ACTG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 0.47

Table S9752.  Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ACTG2 MUTATED 2 1 3
ACTG2 WILD-TYPE 119 107 69
'ACTG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 0.46

Table S9753.  Gene #985: 'ACTG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ACTG2 MUTATED 1 0 2 2 1
ACTG2 WILD-TYPE 87 66 43 53 46
'PIK3CB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S9754.  Gene #986: 'PIK3CB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PIK3CB MUTATED 4 7 0 0
PIK3CB WILD-TYPE 200 130 47 3
'PIK3CB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.55

Table S9755.  Gene #986: 'PIK3CB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PIK3CB MUTATED 1 2 3 2 1
PIK3CB WILD-TYPE 38 94 41 86 79
'PIK3CB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S9756.  Gene #986: 'PIK3CB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PIK3CB MUTATED 0 5 2 1 2
PIK3CB WILD-TYPE 26 74 71 81 56
'PIK3CB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S9757.  Gene #986: 'PIK3CB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PIK3CB MUTATED 3 4 2 1
PIK3CB WILD-TYPE 124 47 69 68
'PIK3CB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.191 (Fisher's exact test), Q value = 0.32

Table S9758.  Gene #986: 'PIK3CB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PIK3CB MUTATED 1 1 5 1 0
PIK3CB WILD-TYPE 83 84 80 68 47
'PIK3CB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 0.56

Table S9759.  Gene #986: 'PIK3CB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PIK3CB MUTATED 3 1 1 3
PIK3CB WILD-TYPE 92 73 120 77
'PIK3CB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 0.58

Table S9760.  Gene #986: 'PIK3CB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PIK3CB MUTATED 2 4 1 2 0 2
PIK3CB WILD-TYPE 50 60 71 102 40 57
'PIK3CB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 0.95

Table S9761.  Gene #986: 'PIK3CB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PIK3CB MUTATED 7 2 2
PIK3CB WILD-TYPE 210 73 97
'PIK3CB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9762.  Gene #986: 'PIK3CB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PIK3CB MUTATED 3 2 2
PIK3CB WILD-TYPE 118 106 70
'PIK3CB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9763.  Gene #986: 'PIK3CB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PIK3CB MUTATED 2 2 1 1 1
PIK3CB WILD-TYPE 86 64 44 54 46
'LAT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.33 (Fisher's exact test), Q value = 0.46

Table S9764.  Gene #987: 'LAT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LAT2 MUTATED 3 5 0 0
LAT2 WILD-TYPE 201 132 47 3
'LAT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.354 (Fisher's exact test), Q value = 0.48

Table S9765.  Gene #987: 'LAT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LAT2 MUTATED 0 4 1 2 0
LAT2 WILD-TYPE 39 92 43 86 80
'LAT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 0.54

Table S9766.  Gene #987: 'LAT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LAT2 MUTATED 1 3 3 1 0
LAT2 WILD-TYPE 25 76 70 81 58
'LAT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S9767.  Gene #987: 'LAT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LAT2 MUTATED 4 2 1 1
LAT2 WILD-TYPE 123 49 70 68
'LAT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 0.99

Table S9768.  Gene #987: 'LAT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LAT2 MUTATED 1 1 2 1 0
LAT2 WILD-TYPE 83 84 83 68 47
'LAT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 0.4

Table S9769.  Gene #987: 'LAT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LAT2 MUTATED 2 2 0 1
LAT2 WILD-TYPE 93 72 121 79
'LAT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.505 (Fisher's exact test), Q value = 0.61

Table S9770.  Gene #987: 'LAT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LAT2 MUTATED 1 2 0 2 2 1
LAT2 WILD-TYPE 51 62 72 102 38 58
'LAT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 0.55

Table S9771.  Gene #987: 'LAT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LAT2 MUTATED 4 3 1
LAT2 WILD-TYPE 213 72 98
'LAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.47

Table S9772.  Gene #987: 'LAT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LAT2 MUTATED 2 1 3
LAT2 WILD-TYPE 119 107 69
'LAT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.503 (Fisher's exact test), Q value = 0.61

Table S9773.  Gene #987: 'LAT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LAT2 MUTATED 1 2 1 0 2
LAT2 WILD-TYPE 87 64 44 55 45
'ZBTB40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S9774.  Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZBTB40 MUTATED 3 7 1 0
ZBTB40 WILD-TYPE 201 130 46 3
'ZBTB40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0345 (Fisher's exact test), Q value = 0.12

Table S9775.  Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZBTB40 MUTATED 1 7 1 0 1
ZBTB40 WILD-TYPE 38 89 43 88 79

Figure S3545.  Get High-res Image Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZBTB40 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.54

Table S9776.  Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZBTB40 MUTATED 0 4 4 1 1
ZBTB40 WILD-TYPE 26 75 69 81 57
'ZBTB40 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.177 (Fisher's exact test), Q value = 0.31

Table S9777.  Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZBTB40 MUTATED 2 3 4 1
ZBTB40 WILD-TYPE 125 48 67 68
'ZBTB40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.12

Table S9778.  Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZBTB40 MUTATED 1 0 6 1 1
ZBTB40 WILD-TYPE 83 85 79 68 46

Figure S3546.  Get High-res Image Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZBTB40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 0.99

Table S9779.  Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZBTB40 MUTATED 3 1 3 2
ZBTB40 WILD-TYPE 92 73 118 78
'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.091

Table S9780.  Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZBTB40 MUTATED 5 3 2 1 0 0
ZBTB40 WILD-TYPE 47 61 70 103 40 59

Figure S3547.  Get High-res Image Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S9781.  Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZBTB40 MUTATED 10 1 0
ZBTB40 WILD-TYPE 207 74 99

Figure S3548.  Get High-res Image Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S9782.  Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZBTB40 MUTATED 4 2 3
ZBTB40 WILD-TYPE 117 106 69
'ZBTB40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S9783.  Gene #988: 'ZBTB40 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZBTB40 MUTATED 5 0 2 0 2
ZBTB40 WILD-TYPE 83 66 43 55 45
'PIGO MUTATION STATUS' versus 'CN_CNMF'

P value = 0.031 (Fisher's exact test), Q value = 0.11

Table S9784.  Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PIGO MUTATED 1 7 1 0
PIGO WILD-TYPE 203 130 46 3

Figure S3549.  Get High-res Image Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PIGO MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0809 (Fisher's exact test), Q value = 0.19

Table S9785.  Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PIGO MUTATED 1 6 1 0 1
PIGO WILD-TYPE 38 90 43 88 79
'PIGO MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 0.38

Table S9786.  Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PIGO MUTATED 0 3 2 0 3
PIGO WILD-TYPE 26 76 71 82 55
'PIGO MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0609 (Fisher's exact test), Q value = 0.16

Table S9787.  Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PIGO MUTATED 3 4 1 0
PIGO WILD-TYPE 124 47 70 69
'PIGO MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0235 (Fisher's exact test), Q value = 0.092

Table S9788.  Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PIGO MUTATED 0 1 6 2 0
PIGO WILD-TYPE 84 84 79 67 47

Figure S3550.  Get High-res Image Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIGO MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.081 (Fisher's exact test), Q value = 0.19

Table S9789.  Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PIGO MUTATED 4 2 0 3
PIGO WILD-TYPE 91 72 121 77
'PIGO MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S9790.  Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PIGO MUTATED 4 1 1 3 0 0
PIGO WILD-TYPE 48 63 71 101 40 59
'PIGO MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S9791.  Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PIGO MUTATED 7 1 1
PIGO WILD-TYPE 210 74 98
'PIGO MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.78

Table S9792.  Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PIGO MUTATED 4 2 1
PIGO WILD-TYPE 117 106 71
'PIGO MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.938 (Fisher's exact test), Q value = 0.97

Table S9793.  Gene #989: 'PIGO MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PIGO MUTATED 2 1 1 1 2
PIGO WILD-TYPE 86 65 44 54 45
'NAA16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.21

Table S9794.  Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NAA16 MUTATED 2 7 0 0
NAA16 WILD-TYPE 202 130 47 3
'NAA16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.416 (Fisher's exact test), Q value = 0.53

Table S9795.  Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NAA16 MUTATED 1 3 1 0 1
NAA16 WILD-TYPE 38 93 43 88 79
'NAA16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S9796.  Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NAA16 MUTATED 0 3 3 0 3
NAA16 WILD-TYPE 26 76 70 82 55
'NAA16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0186 (Fisher's exact test), Q value = 0.08

Table S9797.  Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NAA16 MUTATED 3 5 1 0
NAA16 WILD-TYPE 124 46 70 69

Figure S3551.  Get High-res Image Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NAA16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00201 (Fisher's exact test), Q value = 0.023

Table S9798.  Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NAA16 MUTATED 0 0 7 1 1
NAA16 WILD-TYPE 84 85 78 68 46

Figure S3552.  Get High-res Image Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NAA16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.78

Table S9799.  Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NAA16 MUTATED 3 1 2 3
NAA16 WILD-TYPE 92 73 119 77
'NAA16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00255 (Fisher's exact test), Q value = 0.027

Table S9800.  Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NAA16 MUTATED 3 5 0 0 0 1
NAA16 WILD-TYPE 49 59 72 104 40 58

Figure S3553.  Get High-res Image Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NAA16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.94

Table S9801.  Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NAA16 MUTATED 6 1 2
NAA16 WILD-TYPE 211 74 97
'NAA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.14

Table S9802.  Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NAA16 MUTATED 3 0 4
NAA16 WILD-TYPE 118 108 68

Figure S3554.  Get High-res Image Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NAA16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S9803.  Gene #990: 'NAA16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NAA16 MUTATED 1 0 3 1 2
NAA16 WILD-TYPE 87 66 42 54 45
'NRN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S9804.  Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NRN1 MUTATED 1 2 0 0
NRN1 WILD-TYPE 203 135 47 3
'NRN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S9805.  Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NRN1 MUTATED 0 3 0 0 0
NRN1 WILD-TYPE 39 93 44 88 80
'NRN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 0.6

Table S9806.  Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NRN1 MUTATED 0 1 2 0 0
NRN1 WILD-TYPE 26 78 71 82 58
'NRN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00413 (Fisher's exact test), Q value = 0.035

Table S9807.  Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NRN1 MUTATED 0 3 0 0
NRN1 WILD-TYPE 127 48 71 69

Figure S3555.  Get High-res Image Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NRN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S9808.  Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NRN1 MUTATED 0 0 2 0 1
NRN1 WILD-TYPE 84 85 83 69 46
'NRN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S9809.  Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NRN1 MUTATED 1 0 0 2
NRN1 WILD-TYPE 94 74 121 78
'NRN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00306 (Fisher's exact test), Q value = 0.03

Table S9810.  Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NRN1 MUTATED 3 0 0 0 0 0
NRN1 WILD-TYPE 49 64 72 104 40 59

Figure S3556.  Get High-res Image Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NRN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.68

Table S9811.  Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NRN1 MUTATED 3 0 0
NRN1 WILD-TYPE 214 75 99
'NRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9812.  Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NRN1 MUTATED 1 1 1
NRN1 WILD-TYPE 120 107 71
'NRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S9813.  Gene #991: 'NRN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NRN1 MUTATED 1 0 0 0 2
NRN1 WILD-TYPE 87 66 45 55 45
'EPN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00227 (Fisher's exact test), Q value = 0.025

Table S9814.  Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EPN1 MUTATED 0 8 0 0
EPN1 WILD-TYPE 204 129 47 3

Figure S3557.  Get High-res Image Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0119 (Fisher's exact test), Q value = 0.062

Table S9815.  Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EPN1 MUTATED 0 6 1 0 0
EPN1 WILD-TYPE 39 90 43 88 80

Figure S3558.  Get High-res Image Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S9816.  Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EPN1 MUTATED 1 3 2 0 0
EPN1 WILD-TYPE 25 76 71 82 58
'EPN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.24

Table S9817.  Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EPN1 MUTATED 1 2 3 0
EPN1 WILD-TYPE 126 49 68 69
'EPN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S9818.  Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EPN1 MUTATED 1 0 4 1 1
EPN1 WILD-TYPE 83 85 81 68 46
'EPN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0171 (Fisher's exact test), Q value = 0.076

Table S9819.  Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EPN1 MUTATED 3 0 0 4
EPN1 WILD-TYPE 92 74 121 76

Figure S3559.  Get High-res Image Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EPN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0655 (Fisher's exact test), Q value = 0.17

Table S9820.  Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EPN1 MUTATED 3 3 1 0 0 1
EPN1 WILD-TYPE 49 61 71 104 40 58
'EPN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 0.39

Table S9821.  Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EPN1 MUTATED 7 0 1
EPN1 WILD-TYPE 210 75 98
'EPN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.55

Table S9822.  Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EPN1 MUTATED 3 1 3
EPN1 WILD-TYPE 118 107 69
'EPN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0807 (Fisher's exact test), Q value = 0.19

Table S9823.  Gene #992: 'EPN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EPN1 MUTATED 2 0 3 0 2
EPN1 WILD-TYPE 86 66 42 55 45
'PPARG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0818 (Fisher's exact test), Q value = 0.19

Table S9824.  Gene #993: 'PPARG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PPARG MUTATED 0 3 1 0
PPARG WILD-TYPE 204 134 46 3
'PPARG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.232 (Fisher's exact test), Q value = 0.36

Table S9825.  Gene #993: 'PPARG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PPARG MUTATED 0 1 0 0 2
PPARG WILD-TYPE 26 78 73 82 56
'PPARG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.673 (Fisher's exact test), Q value = 0.75

Table S9826.  Gene #993: 'PPARG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PPARG MUTATED 1 1 1 0
PPARG WILD-TYPE 126 50 70 69
'PPARG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S9827.  Gene #993: 'PPARG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PPARG MUTATED 0 0 1 2 1
PPARG WILD-TYPE 84 85 84 67 46
'PPARG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S9828.  Gene #993: 'PPARG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PPARG MUTATED 3 0 0 1
PPARG WILD-TYPE 92 74 121 79
'PPARG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.1

Table S9829.  Gene #993: 'PPARG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PPARG MUTATED 1 3 0 0 0 0
PPARG WILD-TYPE 51 61 72 104 40 59

Figure S3560.  Get High-res Image Gene #993: 'PPARG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPARG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.51

Table S9830.  Gene #993: 'PPARG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PPARG MUTATED 4 0 0
PPARG WILD-TYPE 213 75 99
'C1ORF141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S9831.  Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C1ORF141 MUTATED 3 6 3 0
C1ORF141 WILD-TYPE 201 131 44 3
'C1ORF141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.542 (Fisher's exact test), Q value = 0.64

Table S9832.  Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C1ORF141 MUTATED 1 5 2 1 2
C1ORF141 WILD-TYPE 38 91 42 87 78
'C1ORF141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.21

Table S9833.  Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C1ORF141 MUTATED 0 4 5 0 3
C1ORF141 WILD-TYPE 26 75 68 82 55
'C1ORF141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0407 (Fisher's exact test), Q value = 0.13

Table S9834.  Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C1ORF141 MUTATED 4 5 3 0
C1ORF141 WILD-TYPE 123 46 68 69

Figure S3561.  Get High-res Image Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C1ORF141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 0.51

Table S9835.  Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C1ORF141 MUTATED 1 2 5 1 2
C1ORF141 WILD-TYPE 83 83 80 68 45
'C1ORF141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00149 (Fisher's exact test), Q value = 0.02

Table S9836.  Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C1ORF141 MUTATED 1 1 1 8
C1ORF141 WILD-TYPE 94 73 120 72

Figure S3562.  Get High-res Image Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1ORF141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S9837.  Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C1ORF141 MUTATED 4 1 3 3 0 1
C1ORF141 WILD-TYPE 48 63 69 101 40 58
'C1ORF141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S9838.  Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C1ORF141 MUTATED 10 1 1
C1ORF141 WILD-TYPE 207 74 98
'C1ORF141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 0.58

Table S9839.  Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C1ORF141 MUTATED 6 2 2
C1ORF141 WILD-TYPE 115 106 70
'C1ORF141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S9840.  Gene #994: 'C1ORF141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C1ORF141 MUTATED 5 2 0 0 3
C1ORF141 WILD-TYPE 83 64 45 55 44
'EXOSC10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0534 (Fisher's exact test), Q value = 0.15

Table S9841.  Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EXOSC10 MUTATED 2 8 1 0
EXOSC10 WILD-TYPE 202 129 46 3
'EXOSC10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 0.39

Table S9842.  Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EXOSC10 MUTATED 1 6 1 1 1
EXOSC10 WILD-TYPE 38 90 43 87 79
'EXOSC10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 0.99

Table S9843.  Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EXOSC10 MUTATED 1 2 2 3 1
EXOSC10 WILD-TYPE 25 77 71 79 57
'EXOSC10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 0.99

Table S9844.  Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EXOSC10 MUTATED 3 2 2 2
EXOSC10 WILD-TYPE 124 49 69 67
'EXOSC10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00087 (Fisher's exact test), Q value = 0.014

Table S9845.  Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EXOSC10 MUTATED 0 2 9 1 0
EXOSC10 WILD-TYPE 84 83 76 68 47

Figure S3563.  Get High-res Image Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EXOSC10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0194 (Fisher's exact test), Q value = 0.082

Table S9846.  Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EXOSC10 MUTATED 1 4 1 6
EXOSC10 WILD-TYPE 94 70 120 74

Figure S3564.  Get High-res Image Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0856 (Fisher's exact test), Q value = 0.2

Table S9847.  Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EXOSC10 MUTATED 4 4 0 2 1 1
EXOSC10 WILD-TYPE 48 60 72 102 39 58
'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S9848.  Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EXOSC10 MUTATED 10 1 1
EXOSC10 WILD-TYPE 207 74 98
'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S9849.  Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EXOSC10 MUTATED 4 2 3
EXOSC10 WILD-TYPE 117 106 69
'EXOSC10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 0.45

Table S9850.  Gene #995: 'EXOSC10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EXOSC10 MUTATED 3 0 1 2 3
EXOSC10 WILD-TYPE 85 66 44 53 44
'ARID3A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S9851.  Gene #996: 'ARID3A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARID3A MUTATED 1 5 0 0
ARID3A WILD-TYPE 203 132 47 3
'ARID3A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.073 (Fisher's exact test), Q value = 0.18

Table S9852.  Gene #996: 'ARID3A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARID3A MUTATED 0 5 0 0 1
ARID3A WILD-TYPE 39 91 44 88 79
'ARID3A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 0.72

Table S9853.  Gene #996: 'ARID3A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARID3A MUTATED 1 1 1 1 0
ARID3A WILD-TYPE 25 78 72 81 58
'ARID3A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.244 (Fisher's exact test), Q value = 0.38

Table S9854.  Gene #996: 'ARID3A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARID3A MUTATED 1 2 0 1
ARID3A WILD-TYPE 126 49 71 68
'ARID3A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0616 (Fisher's exact test), Q value = 0.16

Table S9855.  Gene #996: 'ARID3A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARID3A MUTATED 0 0 4 1 1
ARID3A WILD-TYPE 84 85 81 68 46
'ARID3A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.78

Table S9856.  Gene #996: 'ARID3A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARID3A MUTATED 2 0 2 2
ARID3A WILD-TYPE 93 74 119 78
'ARID3A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.6

Table S9857.  Gene #996: 'ARID3A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARID3A MUTATED 2 2 1 1 0 0
ARID3A WILD-TYPE 50 62 71 103 40 59
'ARID3A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.27

Table S9858.  Gene #996: 'ARID3A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARID3A MUTATED 6 0 0
ARID3A WILD-TYPE 211 75 99
'ARID3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S9859.  Gene #996: 'ARID3A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARID3A MUTATED 1 1 3
ARID3A WILD-TYPE 120 107 69
'ARID3A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S9860.  Gene #996: 'ARID3A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARID3A MUTATED 1 0 2 0 2
ARID3A WILD-TYPE 87 66 43 55 45
'RAB14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.48

Table S9861.  Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RAB14 MUTATED 2 4 0 0
RAB14 WILD-TYPE 202 133 47 3
'RAB14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.57

Table S9862.  Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RAB14 MUTATED 0 3 0 1 0
RAB14 WILD-TYPE 39 93 44 87 80
'RAB14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.46

Table S9863.  Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RAB14 MUTATED 0 3 1 0 2
RAB14 WILD-TYPE 26 76 72 82 56
'RAB14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00053 (Fisher's exact test), Q value = 0.011

Table S9864.  Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RAB14 MUTATED 1 5 0 0
RAB14 WILD-TYPE 126 46 71 69

Figure S3565.  Get High-res Image Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RAB14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.847 (Fisher's exact test), Q value = 0.89

Table S9865.  Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RAB14 MUTATED 1 1 2 0 1
RAB14 WILD-TYPE 83 84 83 69 46
'RAB14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S9866.  Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RAB14 MUTATED 0 1 1 3
RAB14 WILD-TYPE 95 73 120 77
'RAB14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S9867.  Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RAB14 MUTATED 2 2 1 1 0 0
RAB14 WILD-TYPE 50 62 71 103 40 59
'RAB14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9868.  Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RAB14 MUTATED 4 1 1
RAB14 WILD-TYPE 213 74 98
'RAB14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S9869.  Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RAB14 MUTATED 3 1 0
RAB14 WILD-TYPE 118 107 72
'RAB14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S9870.  Gene #997: 'RAB14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RAB14 MUTATED 0 1 0 1 2
RAB14 WILD-TYPE 88 65 45 54 45
'IGSF9B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.019

Table S9871.  Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IGSF9B MUTATED 3 15 2 0
IGSF9B WILD-TYPE 201 122 45 3

Figure S3566.  Get High-res Image Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'IGSF9B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0514 (Fisher's exact test), Q value = 0.15

Table S9872.  Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IGSF9B MUTATED 0 10 1 2 3
IGSF9B WILD-TYPE 39 86 43 86 77
'IGSF9B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.307 (Fisher's exact test), Q value = 0.44

Table S9873.  Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IGSF9B MUTATED 2 5 5 1 3
IGSF9B WILD-TYPE 24 74 68 81 55
'IGSF9B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00273 (Fisher's exact test), Q value = 0.028

Table S9874.  Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IGSF9B MUTATED 3 8 4 1
IGSF9B WILD-TYPE 124 43 67 68

Figure S3567.  Get High-res Image Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IGSF9B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0778 (Fisher's exact test), Q value = 0.19

Table S9875.  Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IGSF9B MUTATED 2 6 9 1 2
IGSF9B WILD-TYPE 82 79 76 68 45
'IGSF9B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.11

Table S9876.  Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IGSF9B MUTATED 4 3 3 10
IGSF9B WILD-TYPE 91 71 118 70

Figure S3568.  Get High-res Image Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'IGSF9B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S9877.  Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IGSF9B MUTATED 4 6 5 2 1 2
IGSF9B WILD-TYPE 48 58 67 102 39 57
'IGSF9B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S9878.  Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IGSF9B MUTATED 15 1 4
IGSF9B WILD-TYPE 202 74 95
'IGSF9B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S9879.  Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IGSF9B MUTATED 9 2 4
IGSF9B WILD-TYPE 112 106 68
'IGSF9B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0033 (Fisher's exact test), Q value = 0.031

Table S9880.  Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IGSF9B MUTATED 6 0 3 0 6
IGSF9B WILD-TYPE 82 66 42 55 41

Figure S3569.  Get High-res Image Gene #998: 'IGSF9B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ARNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 0.18

Table S9881.  Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARNT MUTATED 1 6 1 0
ARNT WILD-TYPE 203 131 46 3
'ARNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.496 (Fisher's exact test), Q value = 0.6

Table S9882.  Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARNT MUTATED 1 4 0 1 1
ARNT WILD-TYPE 38 92 44 87 79
'ARNT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.49

Table S9883.  Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARNT MUTATED 0 2 3 0 2
ARNT WILD-TYPE 26 77 70 82 56
'ARNT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00087 (Fisher's exact test), Q value = 0.014

Table S9884.  Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARNT MUTATED 0 5 1 1
ARNT WILD-TYPE 127 46 70 68

Figure S3570.  Get High-res Image Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.075

Table S9885.  Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARNT MUTATED 0 1 6 1 0
ARNT WILD-TYPE 84 84 79 68 47

Figure S3571.  Get High-res Image Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ARNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0128 (Fisher's exact test), Q value = 0.065

Table S9886.  Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARNT MUTATED 1 2 0 5
ARNT WILD-TYPE 94 72 121 75

Figure S3572.  Get High-res Image Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ARNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 0.88

Table S9887.  Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARNT MUTATED 2 1 2 1 1 1
ARNT WILD-TYPE 50 63 70 103 39 58
'ARNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S9888.  Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARNT MUTATED 6 0 2
ARNT WILD-TYPE 211 75 97
'ARNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.306 (Fisher's exact test), Q value = 0.44

Table S9889.  Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARNT MUTATED 5 1 1
ARNT WILD-TYPE 116 107 71
'ARNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S9890.  Gene #999: 'ARNT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARNT MUTATED 3 0 0 1 3
ARNT WILD-TYPE 85 66 45 54 44
'CSNK2A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S9891.  Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CSNK2A2 MUTATED 2 6 0 0
CSNK2A2 WILD-TYPE 202 131 47 3
'CSNK2A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S9892.  Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CSNK2A2 MUTATED 1 4 1 2 0
CSNK2A2 WILD-TYPE 38 92 43 86 80
'CSNK2A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S9893.  Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CSNK2A2 MUTATED 0 3 2 0 1
CSNK2A2 WILD-TYPE 26 76 71 82 57
'CSNK2A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.0099

Table S9894.  Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CSNK2A2 MUTATED 0 5 1 0
CSNK2A2 WILD-TYPE 127 46 70 69

Figure S3573.  Get High-res Image Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CSNK2A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0159 (Fisher's exact test), Q value = 0.073

Table S9895.  Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CSNK2A2 MUTATED 1 0 6 1 0
CSNK2A2 WILD-TYPE 83 85 79 68 47

Figure S3574.  Get High-res Image Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CSNK2A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 0.34

Table S9896.  Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CSNK2A2 MUTATED 2 0 2 4
CSNK2A2 WILD-TYPE 93 74 119 76
'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S9897.  Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CSNK2A2 MUTATED 3 0 2 1 1 1
CSNK2A2 WILD-TYPE 49 64 70 103 39 58
'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S9898.  Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CSNK2A2 MUTATED 6 0 2
CSNK2A2 WILD-TYPE 211 75 97
'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00291 (Fisher's exact test), Q value = 0.029

Table S9899.  Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CSNK2A2 MUTATED 7 0 0
CSNK2A2 WILD-TYPE 114 108 72

Figure S3575.  Get High-res Image Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CSNK2A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S9900.  Gene #1000: 'CSNK2A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CSNK2A2 MUTATED 3 0 0 1 3
CSNK2A2 WILD-TYPE 85 66 45 54 44
'HOXA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0137 (Fisher's exact test), Q value = 0.067

Table S9901.  Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HOXA1 MUTATED 1 8 1 0
HOXA1 WILD-TYPE 203 129 46 3

Figure S3576.  Get High-res Image Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HOXA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S9902.  Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HOXA1 MUTATED 1 3 1 0 3
HOXA1 WILD-TYPE 38 93 43 88 77
'HOXA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 0.74

Table S9903.  Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HOXA1 MUTATED 1 4 2 1 2
HOXA1 WILD-TYPE 25 75 71 81 56
'HOXA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S9904.  Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HOXA1 MUTATED 2 4 3 1
HOXA1 WILD-TYPE 125 47 68 68
'HOXA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0363 (Fisher's exact test), Q value = 0.12

Table S9905.  Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HOXA1 MUTATED 0 1 6 1 1
HOXA1 WILD-TYPE 84 84 79 68 46

Figure S3577.  Get High-res Image Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HOXA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S9906.  Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HOXA1 MUTATED 1 1 2 5
HOXA1 WILD-TYPE 94 73 119 75
'HOXA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S9907.  Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HOXA1 MUTATED 2 6 1 1 0 0
HOXA1 WILD-TYPE 50 58 71 103 40 59

Figure S3578.  Get High-res Image Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'HOXA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S9908.  Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HOXA1 MUTATED 6 2 2
HOXA1 WILD-TYPE 211 73 97
'HOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00179 (Fisher's exact test), Q value = 0.022

Table S9909.  Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HOXA1 MUTATED 0 1 5
HOXA1 WILD-TYPE 121 107 67

Figure S3579.  Get High-res Image Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'HOXA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0249 (Fisher's exact test), Q value = 0.096

Table S9910.  Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HOXA1 MUTATED 0 1 3 0 2
HOXA1 WILD-TYPE 88 65 42 55 45

Figure S3580.  Get High-res Image Gene #1001: 'HOXA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SYNJ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0528 (Fisher's exact test), Q value = 0.15

Table S9911.  Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SYNJ1 MUTATED 2 8 1 0
SYNJ1 WILD-TYPE 202 129 46 3
'SYNJ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 0.4

Table S9912.  Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SYNJ1 MUTATED 1 5 1 2 0
SYNJ1 WILD-TYPE 38 91 43 86 80
'SYNJ1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S9913.  Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SYNJ1 MUTATED 0 6 1 1 2
SYNJ1 WILD-TYPE 26 73 72 81 56
'SYNJ1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-04 (Fisher's exact test), Q value = 0.011

Table S9914.  Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SYNJ1 MUTATED 0 6 3 1
SYNJ1 WILD-TYPE 127 45 68 68

Figure S3581.  Get High-res Image Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SYNJ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.497 (Fisher's exact test), Q value = 0.6

Table S9915.  Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SYNJ1 MUTATED 3 2 3 0 2
SYNJ1 WILD-TYPE 81 83 82 69 45
'SYNJ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0575 (Fisher's exact test), Q value = 0.16

Table S9916.  Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SYNJ1 MUTATED 1 1 2 6
SYNJ1 WILD-TYPE 94 73 119 74
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S9917.  Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SYNJ1 MUTATED 4 3 2 1 0 1
SYNJ1 WILD-TYPE 48 61 70 103 40 58
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S9918.  Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SYNJ1 MUTATED 8 0 3
SYNJ1 WILD-TYPE 209 75 96
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 0.5

Table S9919.  Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SYNJ1 MUTATED 5 1 2
SYNJ1 WILD-TYPE 116 107 70
'SYNJ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 0.12

Table S9920.  Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SYNJ1 MUTATED 3 0 1 0 4
SYNJ1 WILD-TYPE 85 66 44 55 43

Figure S3582.  Get High-res Image Gene #1002: 'SYNJ1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ABCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.55

Table S9921.  Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABCC2 MUTATED 5 7 2 0
ABCC2 WILD-TYPE 199 130 45 3
'ABCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0427 (Fisher's exact test), Q value = 0.13

Table S9922.  Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABCC2 MUTATED 1 7 3 0 2
ABCC2 WILD-TYPE 38 89 41 88 78

Figure S3583.  Get High-res Image Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 0.63

Table S9923.  Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABCC2 MUTATED 2 3 1 3 3
ABCC2 WILD-TYPE 24 76 72 79 55
'ABCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0822 (Fisher's exact test), Q value = 0.19

Table S9924.  Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABCC2 MUTATED 5 5 1 1
ABCC2 WILD-TYPE 122 46 70 68
'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0329 (Fisher's exact test), Q value = 0.11

Table S9925.  Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABCC2 MUTATED 1 2 9 2 1
ABCC2 WILD-TYPE 83 83 76 67 46

Figure S3584.  Get High-res Image Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.68

Table S9926.  Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABCC2 MUTATED 2 3 5 5
ABCC2 WILD-TYPE 93 71 116 75
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00068 (Fisher's exact test), Q value = 0.013

Table S9927.  Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABCC2 MUTATED 2 7 6 0 1 0
ABCC2 WILD-TYPE 50 57 66 104 39 59

Figure S3585.  Get High-res Image Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.038 (Fisher's exact test), Q value = 0.12

Table S9928.  Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABCC2 MUTATED 14 1 1
ABCC2 WILD-TYPE 203 74 98

Figure S3586.  Get High-res Image Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0764 (Fisher's exact test), Q value = 0.18

Table S9929.  Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABCC2 MUTATED 6 1 5
ABCC2 WILD-TYPE 115 107 67
'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 0.42

Table S9930.  Gene #1003: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABCC2 MUTATED 3 1 3 1 4
ABCC2 WILD-TYPE 85 65 42 54 43
'HEPACAM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00632 (Fisher's exact test), Q value = 0.044

Table S9931.  Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HEPACAM2 MUTATED 0 6 2 0
HEPACAM2 WILD-TYPE 204 131 45 3

Figure S3587.  Get High-res Image Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HEPACAM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S9932.  Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HEPACAM2 MUTATED 0 2 1 1 1
HEPACAM2 WILD-TYPE 39 94 43 87 79
'HEPACAM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 0.85

Table S9933.  Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HEPACAM2 MUTATED 0 3 2 1 2
HEPACAM2 WILD-TYPE 26 76 71 81 56
'HEPACAM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.398 (Fisher's exact test), Q value = 0.52

Table S9934.  Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HEPACAM2 MUTATED 2 3 2 1
HEPACAM2 WILD-TYPE 125 48 69 68
'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.27

Table S9935.  Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HEPACAM2 MUTATED 0 2 3 0 2
HEPACAM2 WILD-TYPE 84 83 82 69 45
'HEPACAM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00206 (Fisher's exact test), Q value = 0.024

Table S9936.  Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HEPACAM2 MUTATED 0 2 0 5
HEPACAM2 WILD-TYPE 95 72 121 75

Figure S3588.  Get High-res Image Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.65

Table S9937.  Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HEPACAM2 MUTATED 1 3 1 3 0 0
HEPACAM2 WILD-TYPE 51 61 71 101 40 59
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S9938.  Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HEPACAM2 MUTATED 7 1 0
HEPACAM2 WILD-TYPE 210 74 99
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S9939.  Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HEPACAM2 MUTATED 1 2 2
HEPACAM2 WILD-TYPE 120 106 70
'HEPACAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 0.67

Table S9940.  Gene #1004: 'HEPACAM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HEPACAM2 MUTATED 1 1 1 0 2
HEPACAM2 WILD-TYPE 87 65 44 55 45
'MAP4K4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S9941.  Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAP4K4 MUTATED 3 8 2 0
MAP4K4 WILD-TYPE 201 129 45 3
'MAP4K4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S9942.  Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAP4K4 MUTATED 2 4 3 1 1
MAP4K4 WILD-TYPE 37 92 41 87 79
'MAP4K4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.65

Table S9943.  Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAP4K4 MUTATED 1 4 4 1 3
MAP4K4 WILD-TYPE 25 75 69 81 55
'MAP4K4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0339 (Fisher's exact test), Q value = 0.11

Table S9944.  Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAP4K4 MUTATED 3 6 3 1
MAP4K4 WILD-TYPE 124 45 68 68

Figure S3589.  Get High-res Image Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP4K4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S9945.  Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAP4K4 MUTATED 1 2 6 1 1
MAP4K4 WILD-TYPE 83 83 79 68 46
'MAP4K4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S9946.  Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAP4K4 MUTATED 3 1 3 4
MAP4K4 WILD-TYPE 92 73 118 76
'MAP4K4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0396 (Fisher's exact test), Q value = 0.13

Table S9947.  Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAP4K4 MUTATED 3 5 0 3 2 0
MAP4K4 WILD-TYPE 49 59 72 101 38 59

Figure S3590.  Get High-res Image Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP4K4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0434 (Fisher's exact test), Q value = 0.13

Table S9948.  Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAP4K4 MUTATED 11 2 0
MAP4K4 WILD-TYPE 206 73 99

Figure S3591.  Get High-res Image Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAP4K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 0.71

Table S9949.  Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAP4K4 MUTATED 4 3 4
MAP4K4 WILD-TYPE 117 105 68
'MAP4K4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.301 (Fisher's exact test), Q value = 0.43

Table S9950.  Gene #1005: 'MAP4K4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAP4K4 MUTATED 5 2 3 0 1
MAP4K4 WILD-TYPE 83 64 42 55 46
'B4GALT6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.518 (Fisher's exact test), Q value = 0.62

Table S9951.  Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
B4GALT6 MUTATED 2 3 1 0
B4GALT6 WILD-TYPE 202 134 46 3
'B4GALT6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.35

Table S9952.  Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
B4GALT6 MUTATED 0 4 0 1 0
B4GALT6 WILD-TYPE 39 92 44 87 80
'B4GALT6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S9953.  Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
B4GALT6 MUTATED 0 1 4 0 1
B4GALT6 WILD-TYPE 26 78 69 82 57
'B4GALT6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0116 (Fisher's exact test), Q value = 0.062

Table S9954.  Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
B4GALT6 MUTATED 2 4 0 0
B4GALT6 WILD-TYPE 125 47 71 69

Figure S3592.  Get High-res Image Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'B4GALT6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0935 (Fisher's exact test), Q value = 0.21

Table S9955.  Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
B4GALT6 MUTATED 1 0 4 0 1
B4GALT6 WILD-TYPE 83 85 81 69 46
'B4GALT6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00383 (Fisher's exact test), Q value = 0.033

Table S9956.  Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
B4GALT6 MUTATED 0 0 1 5
B4GALT6 WILD-TYPE 95 74 120 75

Figure S3593.  Get High-res Image Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S9957.  Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
B4GALT6 MUTATED 3 1 1 0 0 1
B4GALT6 WILD-TYPE 49 63 71 104 40 58
'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S9958.  Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
B4GALT6 MUTATED 4 0 2
B4GALT6 WILD-TYPE 213 75 97
'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S9959.  Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
B4GALT6 MUTATED 1 0 2
B4GALT6 WILD-TYPE 120 108 70
'B4GALT6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.17

Table S9960.  Gene #1006: 'B4GALT6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
B4GALT6 MUTATED 0 0 0 1 2
B4GALT6 WILD-TYPE 88 66 45 54 45
'NAA25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S9961.  Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NAA25 MUTATED 5 8 2 0
NAA25 WILD-TYPE 199 129 45 3
'NAA25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0388 (Fisher's exact test), Q value = 0.12

Table S9962.  Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NAA25 MUTATED 2 6 4 2 0
NAA25 WILD-TYPE 37 90 40 86 80

Figure S3594.  Get High-res Image Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NAA25 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 0.41

Table S9963.  Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NAA25 MUTATED 1 6 5 1 2
NAA25 WILD-TYPE 25 73 68 81 56
'NAA25 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.225 (Fisher's exact test), Q value = 0.36

Table S9964.  Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NAA25 MUTATED 5 3 6 1
NAA25 WILD-TYPE 122 48 65 68
'NAA25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 0.71

Table S9965.  Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NAA25 MUTATED 3 6 2 2 1
NAA25 WILD-TYPE 81 79 83 67 46
'NAA25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.579 (Fisher's exact test), Q value = 0.68

Table S9966.  Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NAA25 MUTATED 3 3 3 5
NAA25 WILD-TYPE 92 71 118 75
'NAA25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.955 (Fisher's exact test), Q value = 0.98

Table S9967.  Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NAA25 MUTATED 2 2 2 6 1 2
NAA25 WILD-TYPE 50 62 70 98 39 57
'NAA25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 0.87

Table S9968.  Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NAA25 MUTATED 10 2 3
NAA25 WILD-TYPE 207 73 96
'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.539 (Fisher's exact test), Q value = 0.64

Table S9969.  Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NAA25 MUTATED 3 4 4
NAA25 WILD-TYPE 118 104 68
'NAA25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 0.84

Table S9970.  Gene #1007: 'NAA25 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NAA25 MUTATED 4 2 1 1 3
NAA25 WILD-TYPE 84 64 44 54 44
'SAFB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00474 (Fisher's exact test), Q value = 0.037

Table S9971.  Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SAFB MUTATED 0 7 1 0
SAFB WILD-TYPE 204 130 46 3

Figure S3595.  Get High-res Image Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SAFB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S9972.  Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SAFB MUTATED 0 4 0 0 1
SAFB WILD-TYPE 39 92 44 88 79
'SAFB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 0.27

Table S9973.  Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SAFB MUTATED 2 3 2 0 1
SAFB WILD-TYPE 24 76 71 82 57
'SAFB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00992 (Fisher's exact test), Q value = 0.056

Table S9974.  Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SAFB MUTATED 2 5 1 0
SAFB WILD-TYPE 125 46 70 69

Figure S3596.  Get High-res Image Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SAFB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S9975.  Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SAFB MUTATED 1 3 3 0 0
SAFB WILD-TYPE 83 82 82 69 47
'SAFB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 0.14

Table S9976.  Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SAFB MUTATED 1 3 0 3
SAFB WILD-TYPE 94 71 121 77

Figure S3597.  Get High-res Image Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SAFB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.962 (Fisher's exact test), Q value = 0.99

Table S9977.  Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SAFB MUTATED 1 2 2 2 0 1
SAFB WILD-TYPE 51 62 70 102 40 58
'SAFB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 0.78

Table S9978.  Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SAFB MUTATED 5 2 1
SAFB WILD-TYPE 212 73 98
'SAFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.66

Table S9979.  Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SAFB MUTATED 1 1 2
SAFB WILD-TYPE 120 107 70
'SAFB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 0.59

Table S9980.  Gene #1008: 'SAFB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SAFB MUTATED 1 1 0 0 2
SAFB WILD-TYPE 87 65 45 55 45
'ABLIM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0146 (Fisher's exact test), Q value = 0.07

Table S9981.  Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABLIM2 MUTATED 3 8 1 1
ABLIM2 WILD-TYPE 201 129 46 2

Figure S3598.  Get High-res Image Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABLIM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.16

Table S9982.  Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABLIM2 MUTATED 1 7 2 0 2
ABLIM2 WILD-TYPE 38 89 42 88 78
'ABLIM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.35

Table S9983.  Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABLIM2 MUTATED 0 7 3 2 1
ABLIM2 WILD-TYPE 26 72 70 80 57
'ABLIM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0265 (Fisher's exact test), Q value = 0.1

Table S9984.  Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABLIM2 MUTATED 2 4 6 1
ABLIM2 WILD-TYPE 125 47 65 68

Figure S3599.  Get High-res Image Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABLIM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.502 (Fisher's exact test), Q value = 0.61

Table S9985.  Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABLIM2 MUTATED 1 2 5 2 2
ABLIM2 WILD-TYPE 83 83 80 67 45
'ABLIM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.27

Table S9986.  Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABLIM2 MUTATED 3 1 2 6
ABLIM2 WILD-TYPE 92 73 119 74
'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 0.6

Table S9987.  Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABLIM2 MUTATED 3 3 3 3 2 0
ABLIM2 WILD-TYPE 49 61 69 101 38 59
'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.577 (Fisher's exact test), Q value = 0.68

Table S9988.  Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABLIM2 MUTATED 10 2 2
ABLIM2 WILD-TYPE 207 73 97
'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 0.72

Table S9989.  Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABLIM2 MUTATED 4 3 4
ABLIM2 WILD-TYPE 117 105 68
'ABLIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0868 (Fisher's exact test), Q value = 0.2

Table S9990.  Gene #1009: 'ABLIM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABLIM2 MUTATED 3 2 1 0 5
ABLIM2 WILD-TYPE 85 64 44 55 42
'CEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00795 (Fisher's exact test), Q value = 0.05

Table S9991.  Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CEL MUTATED 2 11 2 0
CEL WILD-TYPE 202 126 45 3

Figure S3600.  Get High-res Image Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.68

Table S9992.  Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CEL MUTATED 2 5 3 2 2
CEL WILD-TYPE 37 91 41 86 78
'CEL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S9993.  Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CEL MUTATED 1 4 4 0 2
CEL WILD-TYPE 25 75 69 82 56
'CEL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S9994.  Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CEL MUTATED 5 4 2 0
CEL WILD-TYPE 122 47 69 69
'CEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 0.61

Table S9995.  Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CEL MUTATED 2 2 6 3 1
CEL WILD-TYPE 82 83 79 66 46
'CEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.15

Table S9996.  Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CEL MUTATED 4 1 2 7
CEL WILD-TYPE 91 73 119 73
'CEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 0.79

Table S9997.  Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CEL MUTATED 3 4 1 4 1 2
CEL WILD-TYPE 49 60 71 100 39 57
'CEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 0.57

Table S9998.  Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CEL MUTATED 11 2 2
CEL WILD-TYPE 206 73 97
'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S9999.  Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CEL MUTATED 7 2 4
CEL WILD-TYPE 114 106 68
'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S10000.  Gene #1010: 'CEL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CEL MUTATED 3 2 3 1 4
CEL WILD-TYPE 85 64 42 54 43
'FAM178A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0171 (Fisher's exact test), Q value = 0.077

Table S10001.  Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM178A MUTATED 2 9 0 0
FAM178A WILD-TYPE 202 128 47 3

Figure S3601.  Get High-res Image Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM178A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0838 (Fisher's exact test), Q value = 0.2

Table S10002.  Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM178A MUTATED 1 7 0 1 1
FAM178A WILD-TYPE 38 89 44 87 79
'FAM178A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0459 (Fisher's exact test), Q value = 0.14

Table S10003.  Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM178A MUTATED 2 1 4 0 1
FAM178A WILD-TYPE 24 78 69 82 57

Figure S3602.  Get High-res Image Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FAM178A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.088

Table S10004.  Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM178A MUTATED 4 4 0 0
FAM178A WILD-TYPE 123 47 71 69

Figure S3603.  Get High-res Image Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM178A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0391 (Fisher's exact test), Q value = 0.12

Table S10005.  Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM178A MUTATED 1 1 7 2 0
FAM178A WILD-TYPE 83 84 78 67 47

Figure S3604.  Get High-res Image Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FAM178A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.307 (Fisher's exact test), Q value = 0.44

Table S10006.  Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM178A MUTATED 3 1 2 5
FAM178A WILD-TYPE 92 73 119 75
'FAM178A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S10007.  Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM178A MUTATED 4 3 1 2 0 1
FAM178A WILD-TYPE 48 61 71 102 40 58
'FAM178A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 0.44

Table S10008.  Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM178A MUTATED 9 1 1
FAM178A WILD-TYPE 208 74 98
'FAM178A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S10009.  Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM178A MUTATED 7 1 2
FAM178A WILD-TYPE 114 107 70
'FAM178A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.73

Table S10010.  Gene #1011: 'FAM178A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM178A MUTATED 3 1 2 1 3
FAM178A WILD-TYPE 85 65 43 54 44
'BUB1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00849 (Fisher's exact test), Q value = 0.052

Table S10011.  Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BUB1B MUTATED 2 10 0 0
BUB1B WILD-TYPE 202 127 47 3

Figure S3605.  Get High-res Image Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BUB1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.095

Table S10012.  Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BUB1B MUTATED 1 5 4 1 0
BUB1B WILD-TYPE 38 91 40 87 80

Figure S3606.  Get High-res Image Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BUB1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S10013.  Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BUB1B MUTATED 0 4 2 1 2
BUB1B WILD-TYPE 26 75 71 81 56
'BUB1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0294 (Fisher's exact test), Q value = 0.11

Table S10014.  Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BUB1B MUTATED 2 5 1 1
BUB1B WILD-TYPE 125 46 70 68

Figure S3607.  Get High-res Image Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BUB1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0294 (Fisher's exact test), Q value = 0.11

Table S10015.  Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BUB1B MUTATED 0 1 6 1 2
BUB1B WILD-TYPE 84 84 79 68 45

Figure S3608.  Get High-res Image Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BUB1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00402 (Fisher's exact test), Q value = 0.034

Table S10016.  Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BUB1B MUTATED 1 0 2 7
BUB1B WILD-TYPE 94 74 119 73

Figure S3609.  Get High-res Image Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BUB1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00675 (Fisher's exact test), Q value = 0.045

Table S10017.  Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BUB1B MUTATED 6 2 3 1 0 0
BUB1B WILD-TYPE 46 62 69 103 40 59

Figure S3610.  Get High-res Image Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'BUB1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0379 (Fisher's exact test), Q value = 0.12

Table S10018.  Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BUB1B MUTATED 11 0 1
BUB1B WILD-TYPE 206 75 98

Figure S3611.  Get High-res Image Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BUB1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S10019.  Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BUB1B MUTATED 6 1 3
BUB1B WILD-TYPE 115 107 69
'BUB1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0262 (Fisher's exact test), Q value = 0.1

Table S10020.  Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BUB1B MUTATED 5 0 1 0 4
BUB1B WILD-TYPE 83 66 44 55 43

Figure S3612.  Get High-res Image Gene #1012: 'BUB1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EEA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S10021.  Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EEA1 MUTATED 3 11 0 0
EEA1 WILD-TYPE 201 126 47 3

Figure S3613.  Get High-res Image Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EEA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00505 (Fisher's exact test), Q value = 0.039

Table S10022.  Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EEA1 MUTATED 1 6 5 0 1
EEA1 WILD-TYPE 38 90 39 88 79

Figure S3614.  Get High-res Image Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EEA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S10023.  Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EEA1 MUTATED 0 4 2 1 4
EEA1 WILD-TYPE 26 75 71 81 54
'EEA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0714 (Fisher's exact test), Q value = 0.18

Table S10024.  Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EEA1 MUTATED 2 5 2 2
EEA1 WILD-TYPE 125 46 69 67
'EEA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.12

Table S10025.  Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EEA1 MUTATED 0 2 6 1 3
EEA1 WILD-TYPE 84 83 79 68 44

Figure S3615.  Get High-res Image Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EEA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S10026.  Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EEA1 MUTATED 2 2 1 7
EEA1 WILD-TYPE 93 72 120 73

Figure S3616.  Get High-res Image Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EEA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0745 (Fisher's exact test), Q value = 0.18

Table S10027.  Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EEA1 MUTATED 5 4 2 2 1 0
EEA1 WILD-TYPE 47 60 70 102 39 59
'EEA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0292 (Fisher's exact test), Q value = 0.11

Table S10028.  Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EEA1 MUTATED 12 2 0
EEA1 WILD-TYPE 205 73 99

Figure S3617.  Get High-res Image Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EEA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S10029.  Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EEA1 MUTATED 7 1 3
EEA1 WILD-TYPE 114 107 69
'EEA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S10030.  Gene #1013: 'EEA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EEA1 MUTATED 6 2 1 0 2
EEA1 WILD-TYPE 82 64 44 55 45
'KCNH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00137 (Fisher's exact test), Q value = 0.019

Table S10031.  Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCNH3 MUTATED 2 13 2 0
KCNH3 WILD-TYPE 202 124 45 3

Figure S3618.  Get High-res Image Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00683 (Fisher's exact test), Q value = 0.046

Table S10032.  Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCNH3 MUTATED 1 11 2 1 1
KCNH3 WILD-TYPE 38 85 42 87 79

Figure S3619.  Get High-res Image Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.33

Table S10033.  Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCNH3 MUTATED 0 6 3 1 4
KCNH3 WILD-TYPE 26 73 70 81 54
'KCNH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00077 (Fisher's exact test), Q value = 0.013

Table S10034.  Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCNH3 MUTATED 1 7 5 1
KCNH3 WILD-TYPE 126 44 66 68

Figure S3620.  Get High-res Image Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0398 (Fisher's exact test), Q value = 0.13

Table S10035.  Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCNH3 MUTATED 1 2 8 1 3
KCNH3 WILD-TYPE 83 83 77 68 44

Figure S3621.  Get High-res Image Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00723 (Fisher's exact test), Q value = 0.047

Table S10036.  Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCNH3 MUTATED 3 1 2 9
KCNH3 WILD-TYPE 92 73 119 71

Figure S3622.  Get High-res Image Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KCNH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 0.59

Table S10037.  Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCNH3 MUTATED 2 5 5 3 1 1
KCNH3 WILD-TYPE 50 59 67 101 39 58
'KCNH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S10038.  Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCNH3 MUTATED 12 3 2
KCNH3 WILD-TYPE 205 72 97
'KCNH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0182 (Fisher's exact test), Q value = 0.079

Table S10039.  Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCNH3 MUTATED 5 2 8
KCNH3 WILD-TYPE 116 106 64

Figure S3623.  Get High-res Image Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KCNH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.035 (Fisher's exact test), Q value = 0.12

Table S10040.  Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCNH3 MUTATED 3 1 4 1 6
KCNH3 WILD-TYPE 85 65 41 54 41

Figure S3624.  Get High-res Image Gene #1014: 'KCNH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DIP2C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00074 (Fisher's exact test), Q value = 0.013

Table S10041.  Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DIP2C MUTATED 3 16 3 0
DIP2C WILD-TYPE 201 121 44 3

Figure S3625.  Get High-res Image Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DIP2C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 0.096

Table S10042.  Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DIP2C MUTATED 2 9 5 1 2
DIP2C WILD-TYPE 37 87 39 87 78

Figure S3626.  Get High-res Image Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DIP2C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S10043.  Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DIP2C MUTATED 3 7 5 1 3
DIP2C WILD-TYPE 23 72 68 81 55
'DIP2C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-05 (Fisher's exact test), Q value = 0.0016

Table S10044.  Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DIP2C MUTATED 4 12 2 1
DIP2C WILD-TYPE 123 39 69 68

Figure S3627.  Get High-res Image Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DIP2C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0343 (Fisher's exact test), Q value = 0.11

Table S10045.  Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DIP2C MUTATED 2 3 11 2 2
DIP2C WILD-TYPE 82 82 74 67 45

Figure S3628.  Get High-res Image Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'DIP2C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0215 (Fisher's exact test), Q value = 0.088

Table S10046.  Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DIP2C MUTATED 5 2 3 10
DIP2C WILD-TYPE 90 72 118 70

Figure S3629.  Get High-res Image Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'DIP2C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00217 (Fisher's exact test), Q value = 0.024

Table S10047.  Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DIP2C MUTATED 3 8 7 0 2 2
DIP2C WILD-TYPE 49 56 65 104 38 57

Figure S3630.  Get High-res Image Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DIP2C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00508 (Fisher's exact test), Q value = 0.039

Table S10048.  Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DIP2C MUTATED 19 0 3
DIP2C WILD-TYPE 198 75 96

Figure S3631.  Get High-res Image Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'DIP2C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00064 (Fisher's exact test), Q value = 0.012

Table S10049.  Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DIP2C MUTATED 9 0 8
DIP2C WILD-TYPE 112 108 64

Figure S3632.  Get High-res Image Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DIP2C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S10050.  Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DIP2C MUTATED 3 0 7 0 7
DIP2C WILD-TYPE 85 66 38 55 40

Figure S3633.  Get High-res Image Gene #1015: 'DIP2C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KLHL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.7

Table S10051.  Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KLHL1 MUTATED 6 7 2 0
KLHL1 WILD-TYPE 198 130 45 3
'KLHL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.63

Table S10052.  Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KLHL1 MUTATED 1 6 2 3 1
KLHL1 WILD-TYPE 38 90 42 85 79
'KLHL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00132 (Fisher's exact test), Q value = 0.018

Table S10053.  Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KLHL1 MUTATED 2 3 8 0 0
KLHL1 WILD-TYPE 24 76 65 82 58

Figure S3634.  Get High-res Image Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'KLHL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00693 (Fisher's exact test), Q value = 0.046

Table S10054.  Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KLHL1 MUTATED 6 6 1 0
KLHL1 WILD-TYPE 121 45 70 69

Figure S3635.  Get High-res Image Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KLHL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 0.96

Table S10055.  Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KLHL1 MUTATED 3 3 3 3 3
KLHL1 WILD-TYPE 81 82 82 66 44
'KLHL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.953 (Fisher's exact test), Q value = 0.98

Table S10056.  Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KLHL1 MUTATED 4 3 4 4
KLHL1 WILD-TYPE 91 71 117 76
'KLHL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S10057.  Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KLHL1 MUTATED 3 3 1 3 0 5
KLHL1 WILD-TYPE 49 61 71 101 40 54
'KLHL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.674 (Fisher's exact test), Q value = 0.75

Table S10058.  Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KLHL1 MUTATED 7 3 5
KLHL1 WILD-TYPE 210 72 94
'KLHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 0.73

Table S10059.  Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KLHL1 MUTATED 5 3 4
KLHL1 WILD-TYPE 116 105 68
'KLHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0458 (Fisher's exact test), Q value = 0.14

Table S10060.  Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KLHL1 MUTATED 0 3 3 2 4
KLHL1 WILD-TYPE 88 63 42 53 43

Figure S3636.  Get High-res Image Gene #1016: 'KLHL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZC3H3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0581 (Fisher's exact test), Q value = 0.16

Table S10061.  Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZC3H3 MUTATED 5 12 2 0
ZC3H3 WILD-TYPE 199 125 45 3
'ZC3H3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.0079

Table S10062.  Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZC3H3 MUTATED 2 12 1 1 0
ZC3H3 WILD-TYPE 37 84 43 87 80

Figure S3637.  Get High-res Image Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZC3H3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 0.49

Table S10063.  Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZC3H3 MUTATED 1 4 5 1 4
ZC3H3 WILD-TYPE 25 75 68 81 54
'ZC3H3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.078

Table S10064.  Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZC3H3 MUTATED 4 7 1 3
ZC3H3 WILD-TYPE 123 44 70 66

Figure S3638.  Get High-res Image Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZC3H3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0613 (Fisher's exact test), Q value = 0.16

Table S10065.  Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZC3H3 MUTATED 2 2 9 2 4
ZC3H3 WILD-TYPE 82 83 76 67 43
'ZC3H3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S10066.  Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZC3H3 MUTATED 5 3 3 8
ZC3H3 WILD-TYPE 90 71 118 72
'ZC3H3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00728 (Fisher's exact test), Q value = 0.047

Table S10067.  Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZC3H3 MUTATED 8 5 2 2 1 1
ZC3H3 WILD-TYPE 44 59 70 102 39 58

Figure S3639.  Get High-res Image Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZC3H3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S10068.  Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZC3H3 MUTATED 15 1 3
ZC3H3 WILD-TYPE 202 74 96
'ZC3H3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S10069.  Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZC3H3 MUTATED 7 1 3
ZC3H3 WILD-TYPE 114 107 69
'ZC3H3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0446 (Fisher's exact test), Q value = 0.13

Table S10070.  Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZC3H3 MUTATED 3 0 2 1 5
ZC3H3 WILD-TYPE 85 66 43 54 42

Figure S3640.  Get High-res Image Gene #1017: 'ZC3H3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00703 (Fisher's exact test), Q value = 0.046

Table S10071.  Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC22A16 MUTATED 1 9 1 0
SLC22A16 WILD-TYPE 203 128 46 3

Figure S3641.  Get High-res Image Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC22A16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0796 (Fisher's exact test), Q value = 0.19

Table S10072.  Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC22A16 MUTATED 1 6 1 0 1
SLC22A16 WILD-TYPE 38 90 43 88 79
'SLC22A16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S10073.  Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC22A16 MUTATED 0 5 3 0 1
SLC22A16 WILD-TYPE 26 74 70 82 57
'SLC22A16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00427 (Fisher's exact test), Q value = 0.035

Table S10074.  Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC22A16 MUTATED 1 5 3 0
SLC22A16 WILD-TYPE 126 46 68 69

Figure S3642.  Get High-res Image Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0526 (Fisher's exact test), Q value = 0.15

Table S10075.  Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC22A16 MUTATED 0 1 6 2 1
SLC22A16 WILD-TYPE 84 84 79 67 46
'SLC22A16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S10076.  Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC22A16 MUTATED 3 1 1 5
SLC22A16 WILD-TYPE 92 73 120 75
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S10077.  Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC22A16 MUTATED 2 5 2 2 0 0
SLC22A16 WILD-TYPE 50 59 70 102 40 59
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0621 (Fisher's exact test), Q value = 0.16

Table S10078.  Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC22A16 MUTATED 10 0 1
SLC22A16 WILD-TYPE 207 75 98
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S10079.  Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC22A16 MUTATED 4 1 4
SLC22A16 WILD-TYPE 117 107 68
'SLC22A16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.059

Table S10080.  Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC22A16 MUTATED 1 0 2 1 5
SLC22A16 WILD-TYPE 87 66 43 54 42

Figure S3643.  Get High-res Image Gene #1018: 'SLC22A16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NHLRC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00379 (Fisher's exact test), Q value = 0.033

Table S10081.  Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NHLRC2 MUTATED 0 7 0 0
NHLRC2 WILD-TYPE 204 130 47 3

Figure S3644.  Get High-res Image Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NHLRC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0242 (Fisher's exact test), Q value = 0.094

Table S10082.  Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NHLRC2 MUTATED 1 5 0 0 0
NHLRC2 WILD-TYPE 38 91 44 88 80

Figure S3645.  Get High-res Image Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NHLRC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 0.17

Table S10083.  Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NHLRC2 MUTATED 0 0 1 1 4
NHLRC2 WILD-TYPE 26 79 72 81 54
'NHLRC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.009

Table S10084.  Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NHLRC2 MUTATED 0 5 0 1
NHLRC2 WILD-TYPE 127 46 71 68

Figure S3646.  Get High-res Image Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NHLRC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S10085.  Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NHLRC2 MUTATED 0 1 4 1 1
NHLRC2 WILD-TYPE 84 84 81 68 46
'NHLRC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.055 (Fisher's exact test), Q value = 0.15

Table S10086.  Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NHLRC2 MUTATED 2 1 0 4
NHLRC2 WILD-TYPE 93 73 121 76
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0802 (Fisher's exact test), Q value = 0.19

Table S10087.  Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NHLRC2 MUTATED 2 2 1 0 2 0
NHLRC2 WILD-TYPE 50 62 71 104 38 59
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S10088.  Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NHLRC2 MUTATED 6 1 0
NHLRC2 WILD-TYPE 211 74 99
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S10089.  Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NHLRC2 MUTATED 4 0 2
NHLRC2 WILD-TYPE 117 108 70
'NHLRC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.122 (Fisher's exact test), Q value = 0.24

Table S10090.  Gene #1019: 'NHLRC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NHLRC2 MUTATED 2 0 1 0 3
NHLRC2 WILD-TYPE 86 66 44 55 44
'CEACAM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0712 (Fisher's exact test), Q value = 0.18

Table S10091.  Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CEACAM3 MUTATED 1 6 1 0
CEACAM3 WILD-TYPE 203 131 46 3
'CEACAM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S10092.  Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CEACAM3 MUTATED 1 5 1 0 1
CEACAM3 WILD-TYPE 38 91 43 88 79
'CEACAM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.369 (Fisher's exact test), Q value = 0.49

Table S10093.  Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CEACAM3 MUTATED 1 3 2 0 2
CEACAM3 WILD-TYPE 25 76 71 82 56
'CEACAM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0125 (Fisher's exact test), Q value = 0.064

Table S10094.  Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CEACAM3 MUTATED 1 5 1 1
CEACAM3 WILD-TYPE 126 46 70 68

Figure S3647.  Get High-res Image Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CEACAM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S10095.  Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CEACAM3 MUTATED 1 1 5 0 1
CEACAM3 WILD-TYPE 83 84 80 69 46
'CEACAM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.48

Table S10096.  Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CEACAM3 MUTATED 1 1 2 4
CEACAM3 WILD-TYPE 94 73 119 76
'CEACAM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S10097.  Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CEACAM3 MUTATED 2 4 1 1 1 0
CEACAM3 WILD-TYPE 50 60 71 103 39 59
'CEACAM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.028 (Fisher's exact test), Q value = 0.1

Table S10098.  Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CEACAM3 MUTATED 9 0 0
CEACAM3 WILD-TYPE 208 75 99

Figure S3648.  Get High-res Image Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CEACAM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0555 (Fisher's exact test), Q value = 0.15

Table S10099.  Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CEACAM3 MUTATED 2 1 5
CEACAM3 WILD-TYPE 119 107 67
'CEACAM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.102 (Fisher's exact test), Q value = 0.22

Table S10100.  Gene #1020: 'CEACAM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CEACAM3 MUTATED 3 0 2 0 3
CEACAM3 WILD-TYPE 85 66 43 55 44
'THBS3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S10101.  Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
THBS3 MUTATED 3 6 1 0
THBS3 WILD-TYPE 201 131 46 3
'THBS3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00913 (Fisher's exact test), Q value = 0.054

Table S10102.  Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
THBS3 MUTATED 0 7 0 0 1
THBS3 WILD-TYPE 39 89 44 88 79

Figure S3649.  Get High-res Image Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THBS3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S10103.  Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
THBS3 MUTATED 1 3 3 0 3
THBS3 WILD-TYPE 25 76 70 82 55
'THBS3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00449 (Fisher's exact test), Q value = 0.036

Table S10104.  Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
THBS3 MUTATED 3 6 1 0
THBS3 WILD-TYPE 124 45 70 69

Figure S3650.  Get High-res Image Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'THBS3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00208 (Fisher's exact test), Q value = 0.024

Table S10105.  Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
THBS3 MUTATED 0 0 7 1 2
THBS3 WILD-TYPE 84 85 78 68 45

Figure S3651.  Get High-res Image Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'THBS3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.11

Table S10106.  Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
THBS3 MUTATED 4 0 1 5
THBS3 WILD-TYPE 91 74 120 75

Figure S3652.  Get High-res Image Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'THBS3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00324 (Fisher's exact test), Q value = 0.031

Table S10107.  Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
THBS3 MUTATED 5 3 2 0 0 0
THBS3 WILD-TYPE 47 61 70 104 40 59

Figure S3653.  Get High-res Image Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'THBS3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0891 (Fisher's exact test), Q value = 0.2

Table S10108.  Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
THBS3 MUTATED 9 0 1
THBS3 WILD-TYPE 208 75 98
'THBS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.091

Table S10109.  Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
THBS3 MUTATED 2 0 4
THBS3 WILD-TYPE 119 108 68

Figure S3654.  Get High-res Image Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'THBS3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 0.13

Table S10110.  Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
THBS3 MUTATED 1 0 2 0 3
THBS3 WILD-TYPE 87 66 43 55 44

Figure S3655.  Get High-res Image Gene #1021: 'THBS3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S10111.  Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPC4 MUTATED 1 5 1 0
GPC4 WILD-TYPE 203 132 46 3
'GPC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S10112.  Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPC4 MUTATED 0 4 2 1 0
GPC4 WILD-TYPE 39 92 42 87 80
'GPC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.66

Table S10113.  Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPC4 MUTATED 0 2 3 1 0
GPC4 WILD-TYPE 26 77 70 81 58
'GPC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.47

Table S10114.  Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPC4 MUTATED 2 2 2 0
GPC4 WILD-TYPE 125 49 69 69
'GPC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.015

Table S10115.  Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPC4 MUTATED 0 0 2 1 5
GPC4 WILD-TYPE 84 85 83 68 42

Figure S3656.  Get High-res Image Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GPC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00452 (Fisher's exact test), Q value = 0.036

Table S10116.  Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPC4 MUTATED 3 0 0 5
GPC4 WILD-TYPE 92 74 121 75

Figure S3657.  Get High-res Image Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0334 (Fisher's exact test), Q value = 0.11

Table S10117.  Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPC4 MUTATED 3 3 2 0 0 0
GPC4 WILD-TYPE 49 61 70 104 40 59

Figure S3658.  Get High-res Image Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 0.11

Table S10118.  Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPC4 MUTATED 8 0 0
GPC4 WILD-TYPE 209 75 99

Figure S3659.  Get High-res Image Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 0.2

Table S10119.  Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPC4 MUTATED 5 0 2
GPC4 WILD-TYPE 116 108 70
'GPC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S10120.  Gene #1022: 'GPC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPC4 MUTATED 3 0 2 0 2
GPC4 WILD-TYPE 85 66 43 55 45
'ABTB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S10121.  Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABTB1 MUTATED 3 7 0 0
ABTB1 WILD-TYPE 201 130 47 3
'ABTB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 0.15

Table S10122.  Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABTB1 MUTATED 0 6 1 1 0
ABTB1 WILD-TYPE 39 90 43 87 80
'ABTB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 0.69

Table S10123.  Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABTB1 MUTATED 1 4 2 1 1
ABTB1 WILD-TYPE 25 75 71 81 57
'ABTB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00247 (Fisher's exact test), Q value = 0.026

Table S10124.  Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABTB1 MUTATED 1 6 1 1
ABTB1 WILD-TYPE 126 45 70 68

Figure S3660.  Get High-res Image Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABTB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S10125.  Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABTB1 MUTATED 0 2 3 1 2
ABTB1 WILD-TYPE 84 83 82 68 45
'ABTB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S10126.  Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABTB1 MUTATED 1 2 1 4
ABTB1 WILD-TYPE 94 72 120 76
'ABTB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.58

Table S10127.  Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABTB1 MUTATED 3 3 1 2 0 1
ABTB1 WILD-TYPE 49 61 71 102 40 58
'ABTB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.618 (Fisher's exact test), Q value = 0.71

Table S10128.  Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABTB1 MUTATED 7 2 1
ABTB1 WILD-TYPE 210 73 98
'ABTB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 0.6

Table S10129.  Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABTB1 MUTATED 4 1 2
ABTB1 WILD-TYPE 117 107 70
'ABTB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S10130.  Gene #1023: 'ABTB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABTB1 MUTATED 0 2 1 1 3
ABTB1 WILD-TYPE 88 64 44 54 44
'NEK7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0262 (Fisher's exact test), Q value = 0.1

Table S10131.  Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NEK7 MUTATED 0 5 1 0
NEK7 WILD-TYPE 204 132 46 3

Figure S3661.  Get High-res Image Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NEK7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0746 (Fisher's exact test), Q value = 0.18

Table S10132.  Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NEK7 MUTATED 2 2 0 0 0
NEK7 WILD-TYPE 37 94 44 88 80
'NEK7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S10133.  Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NEK7 MUTATED 1 1 3 0 1
NEK7 WILD-TYPE 25 78 70 82 57
'NEK7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.26

Table S10134.  Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NEK7 MUTATED 2 3 1 0
NEK7 WILD-TYPE 125 48 70 69
'NEK7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.41

Table S10135.  Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NEK7 MUTATED 1 0 1 2 2
NEK7 WILD-TYPE 83 85 84 67 45
'NEK7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.13

Table S10136.  Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NEK7 MUTATED 3 0 0 3
NEK7 WILD-TYPE 92 74 121 77

Figure S3662.  Get High-res Image Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NEK7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S10137.  Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NEK7 MUTATED 2 2 0 0 1 1
NEK7 WILD-TYPE 50 62 72 104 39 58
'NEK7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S10138.  Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NEK7 MUTATED 3 0 3
NEK7 WILD-TYPE 214 75 96
'NEK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S10139.  Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NEK7 MUTATED 1 0 2
NEK7 WILD-TYPE 120 108 70
'NEK7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00652 (Fisher's exact test), Q value = 0.045

Table S10140.  Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NEK7 MUTATED 0 0 0 0 3
NEK7 WILD-TYPE 88 66 45 55 44

Figure S3663.  Get High-res Image Gene #1024: 'NEK7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'QTRTD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.735 (Fisher's exact test), Q value = 0.8

Table S10141.  Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
QTRTD1 MUTATED 3 3 0 0
QTRTD1 WILD-TYPE 201 134 47 3
'QTRTD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S10142.  Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
QTRTD1 MUTATED 1 2 0 1 0
QTRTD1 WILD-TYPE 38 94 44 87 80
'QTRTD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S10143.  Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
QTRTD1 MUTATED 0 2 2 0 1
QTRTD1 WILD-TYPE 26 77 71 82 57
'QTRTD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S10144.  Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
QTRTD1 MUTATED 1 2 2 0
QTRTD1 WILD-TYPE 126 49 69 69
'QTRTD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S10145.  Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
QTRTD1 MUTATED 2 0 3 0 1
QTRTD1 WILD-TYPE 82 85 82 69 46
'QTRTD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 0.78

Table S10146.  Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
QTRTD1 MUTATED 2 0 2 2
QTRTD1 WILD-TYPE 93 74 119 78
'QTRTD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0223 (Fisher's exact test), Q value = 0.09

Table S10147.  Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
QTRTD1 MUTATED 1 4 0 0 0 1
QTRTD1 WILD-TYPE 51 60 72 104 40 58

Figure S3664.  Get High-res Image Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'QTRTD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.279 (Fisher's exact test), Q value = 0.41

Table S10148.  Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
QTRTD1 MUTATED 3 0 3
QTRTD1 WILD-TYPE 214 75 96
'QTRTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S10149.  Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
QTRTD1 MUTATED 1 0 2
QTRTD1 WILD-TYPE 120 108 70
'QTRTD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.42

Table S10150.  Gene #1025: 'QTRTD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
QTRTD1 MUTATED 0 0 1 1 1
QTRTD1 WILD-TYPE 88 66 44 54 46
'UACA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 0.069

Table S10151.  Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
UACA MUTATED 2 10 2 0
UACA WILD-TYPE 202 127 45 3

Figure S3665.  Get High-res Image Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'UACA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S10152.  Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
UACA MUTATED 2 6 2 0 0
UACA WILD-TYPE 37 90 42 88 80

Figure S3666.  Get High-res Image Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'UACA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.51

Table S10153.  Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
UACA MUTATED 0 4 3 1 4
UACA WILD-TYPE 26 75 70 81 54
'UACA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S10154.  Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
UACA MUTATED 1 8 2 1
UACA WILD-TYPE 126 43 69 68

Figure S3667.  Get High-res Image Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'UACA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 0.17

Table S10155.  Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
UACA MUTATED 0 2 6 3 3
UACA WILD-TYPE 84 83 79 66 44
'UACA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 9e-05 (Fisher's exact test), Q value = 0.0037

Table S10156.  Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
UACA MUTATED 3 1 0 10
UACA WILD-TYPE 92 73 121 70

Figure S3668.  Get High-res Image Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'UACA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 4e-04 (Fisher's exact test), Q value = 0.0091

Table S10157.  Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
UACA MUTATED 6 6 1 1 0 0
UACA WILD-TYPE 46 58 71 103 40 59

Figure S3669.  Get High-res Image Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'UACA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0958 (Fisher's exact test), Q value = 0.21

Table S10158.  Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
UACA MUTATED 12 1 1
UACA WILD-TYPE 205 74 98
'UACA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S10159.  Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
UACA MUTATED 4 1 4
UACA WILD-TYPE 117 107 68
'UACA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S10160.  Gene #1026: 'UACA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
UACA MUTATED 3 1 1 0 4
UACA WILD-TYPE 85 65 44 55 43
'TMEM206 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S10161.  Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMEM206 MUTATED 2 5 0 0
TMEM206 WILD-TYPE 202 132 47 3
'TMEM206 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S10162.  Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TMEM206 MUTATED 0 3 1 0 0
TMEM206 WILD-TYPE 39 93 43 88 80
'TMEM206 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S10163.  Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMEM206 MUTATED 0 3 2 0 1
TMEM206 WILD-TYPE 26 76 71 82 57
'TMEM206 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 0.47

Table S10164.  Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMEM206 MUTATED 2 2 2 0
TMEM206 WILD-TYPE 125 49 69 69
'TMEM206 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0754 (Fisher's exact test), Q value = 0.18

Table S10165.  Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMEM206 MUTATED 0 0 4 2 1
TMEM206 WILD-TYPE 84 85 81 67 46
'TMEM206 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0943 (Fisher's exact test), Q value = 0.21

Table S10166.  Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMEM206 MUTATED 4 1 0 2
TMEM206 WILD-TYPE 91 73 121 78
'TMEM206 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00107 (Fisher's exact test), Q value = 0.016

Table S10167.  Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMEM206 MUTATED 2 5 0 0 0 0
TMEM206 WILD-TYPE 50 59 72 104 40 59

Figure S3670.  Get High-res Image Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TMEM206 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S10168.  Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMEM206 MUTATED 6 0 1
TMEM206 WILD-TYPE 211 75 98
'TMEM206 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S10169.  Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TMEM206 MUTATED 2 0 2
TMEM206 WILD-TYPE 119 108 70
'TMEM206 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S10170.  Gene #1027: 'TMEM206 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TMEM206 MUTATED 1 0 1 0 2
TMEM206 WILD-TYPE 87 66 44 55 45
'CDKN2AIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.78

Table S10171.  Gene #1028: 'CDKN2AIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CDKN2AIP MUTATED 1 2 0 0
CDKN2AIP WILD-TYPE 203 135 47 3
'CDKN2AIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 0.31

Table S10172.  Gene #1028: 'CDKN2AIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CDKN2AIP MUTATED 0 3 0 0 0
CDKN2AIP WILD-TYPE 39 93 44 88 80
'CDKN2AIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0832 (Fisher's exact test), Q value = 0.19

Table S10173.  Gene #1028: 'CDKN2AIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CDKN2AIP MUTATED 0 0 3 0 0
CDKN2AIP WILD-TYPE 84 85 82 69 47
'CDKN2AIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 0.32

Table S10174.  Gene #1028: 'CDKN2AIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CDKN2AIP MUTATED 1 0 0 2
CDKN2AIP WILD-TYPE 94 74 121 78
'CDKN2AIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S10175.  Gene #1028: 'CDKN2AIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CDKN2AIP MUTATED 2 0 1 0 0 0
CDKN2AIP WILD-TYPE 50 64 71 104 40 59
'CDKN2AIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 0.68

Table S10176.  Gene #1028: 'CDKN2AIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CDKN2AIP MUTATED 3 0 0
CDKN2AIP WILD-TYPE 214 75 99
'CDKN2AIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S10177.  Gene #1028: 'CDKN2AIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CDKN2AIP MUTATED 1 0 2
CDKN2AIP WILD-TYPE 120 108 70
'CDKN2AIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S10178.  Gene #1028: 'CDKN2AIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CDKN2AIP MUTATED 1 0 0 0 2
CDKN2AIP WILD-TYPE 87 66 45 55 45
'CLGN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S10179.  Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CLGN MUTATED 1 8 0 0
CLGN WILD-TYPE 203 129 47 3

Figure S3671.  Get High-res Image Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CLGN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 0.29

Table S10180.  Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CLGN MUTATED 0 4 0 0 1
CLGN WILD-TYPE 39 92 44 88 79
'CLGN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.128 (Fisher's exact test), Q value = 0.25

Table S10181.  Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CLGN MUTATED 1 5 2 0 1
CLGN WILD-TYPE 25 74 71 82 57
'CLGN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00188 (Fisher's exact test), Q value = 0.022

Table S10182.  Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CLGN MUTATED 2 6 1 0
CLGN WILD-TYPE 125 45 70 69

Figure S3672.  Get High-res Image Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CLGN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.187 (Fisher's exact test), Q value = 0.32

Table S10183.  Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CLGN MUTATED 0 3 3 0 1
CLGN WILD-TYPE 84 82 82 69 46
'CLGN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.411 (Fisher's exact test), Q value = 0.53

Table S10184.  Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CLGN MUTATED 1 2 1 3
CLGN WILD-TYPE 94 72 120 77
'CLGN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.061 (Fisher's exact test), Q value = 0.16

Table S10185.  Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CLGN MUTATED 1 5 2 1 0 0
CLGN WILD-TYPE 51 59 70 103 40 59
'CLGN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0963 (Fisher's exact test), Q value = 0.21

Table S10186.  Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CLGN MUTATED 8 1 0
CLGN WILD-TYPE 209 74 99
'CLGN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S10187.  Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CLGN MUTATED 1 1 3
CLGN WILD-TYPE 120 107 69
'CLGN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.083 (Fisher's exact test), Q value = 0.19

Table S10188.  Gene #1029: 'CLGN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CLGN MUTATED 0 1 2 0 2
CLGN WILD-TYPE 88 65 43 55 45
'ACAA2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0445 (Fisher's exact test), Q value = 0.13

Table S10189.  Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ACAA2 MUTATED 1 4 3 0
ACAA2 WILD-TYPE 203 133 44 3

Figure S3673.  Get High-res Image Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACAA2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S10190.  Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ACAA2 MUTATED 1 5 0 1 0
ACAA2 WILD-TYPE 38 91 44 87 80
'ACAA2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 0.28

Table S10191.  Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ACAA2 MUTATED 0 1 3 0 3
ACAA2 WILD-TYPE 26 78 70 82 55
'ACAA2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00372 (Fisher's exact test), Q value = 0.033

Table S10192.  Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ACAA2 MUTATED 1 5 0 1
ACAA2 WILD-TYPE 126 46 71 68

Figure S3674.  Get High-res Image Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ACAA2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0865 (Fisher's exact test), Q value = 0.2

Table S10193.  Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ACAA2 MUTATED 0 0 3 2 2
ACAA2 WILD-TYPE 84 85 82 67 45
'ACAA2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00567 (Fisher's exact test), Q value = 0.041

Table S10194.  Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ACAA2 MUTATED 2 0 0 5
ACAA2 WILD-TYPE 93 74 121 75

Figure S3675.  Get High-res Image Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ACAA2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 0.24

Table S10195.  Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ACAA2 MUTATED 2 2 3 0 1 0
ACAA2 WILD-TYPE 50 62 69 104 39 59
'ACAA2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0335 (Fisher's exact test), Q value = 0.11

Table S10196.  Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ACAA2 MUTATED 8 0 0
ACAA2 WILD-TYPE 209 75 99

Figure S3676.  Get High-res Image Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ACAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 0.2

Table S10197.  Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ACAA2 MUTATED 5 0 2
ACAA2 WILD-TYPE 116 108 70
'ACAA2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S10198.  Gene #1030: 'ACAA2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ACAA2 MUTATED 3 0 1 0 3
ACAA2 WILD-TYPE 85 66 44 55 44
'SLC25A45 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0937 (Fisher's exact test), Q value = 0.21

Table S10199.  Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC25A45 MUTATED 2 7 0 0
SLC25A45 WILD-TYPE 202 130 47 3
'SLC25A45 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 0.7

Table S10200.  Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC25A45 MUTATED 0 3 2 1 2
SLC25A45 WILD-TYPE 39 93 42 87 78
'SLC25A45 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.86

Table S10201.  Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC25A45 MUTATED 1 2 1 1 1
SLC25A45 WILD-TYPE 25 77 72 81 57
'SLC25A45 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S10202.  Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC25A45 MUTATED 2 3 1 0
SLC25A45 WILD-TYPE 125 48 70 69
'SLC25A45 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.058

Table S10203.  Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC25A45 MUTATED 1 0 6 0 1
SLC25A45 WILD-TYPE 83 85 79 69 46

Figure S3677.  Get High-res Image Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC25A45 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.661 (Fisher's exact test), Q value = 0.74

Table S10204.  Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC25A45 MUTATED 1 1 3 3
SLC25A45 WILD-TYPE 94 73 118 77
'SLC25A45 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S10205.  Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC25A45 MUTATED 2 5 1 0 0 1
SLC25A45 WILD-TYPE 50 59 71 104 40 58

Figure S3678.  Get High-res Image Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC25A45 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S10206.  Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC25A45 MUTATED 7 1 1
SLC25A45 WILD-TYPE 210 74 98
'SLC25A45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S10207.  Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC25A45 MUTATED 4 1 3
SLC25A45 WILD-TYPE 117 107 69
'SLC25A45 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.041 (Fisher's exact test), Q value = 0.13

Table S10208.  Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC25A45 MUTATED 2 0 3 0 3
SLC25A45 WILD-TYPE 86 66 42 55 44

Figure S3679.  Get High-res Image Gene #1031: 'SLC25A45 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMEFF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S10209.  Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMEFF2 MUTATED 3 7 0 0
TMEFF2 WILD-TYPE 201 130 47 3
'TMEFF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 0.57

Table S10210.  Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TMEFF2 MUTATED 0 5 1 1 2
TMEFF2 WILD-TYPE 39 91 43 87 78
'TMEFF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S10211.  Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMEFF2 MUTATED 1 5 3 1 0
TMEFF2 WILD-TYPE 25 74 70 81 58
'TMEFF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.26

Table S10212.  Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMEFF2 MUTATED 2 4 3 1
TMEFF2 WILD-TYPE 125 47 68 68
'TMEFF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.013

Table S10213.  Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMEFF2 MUTATED 0 1 8 0 1
TMEFF2 WILD-TYPE 84 84 77 69 46

Figure S3680.  Get High-res Image Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMEFF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S10214.  Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMEFF2 MUTATED 3 1 2 4
TMEFF2 WILD-TYPE 92 73 119 76
'TMEFF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.16

Table S10215.  Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMEFF2 MUTATED 2 5 2 1 0 0
TMEFF2 WILD-TYPE 50 59 70 103 40 59
'TMEFF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0784 (Fisher's exact test), Q value = 0.19

Table S10216.  Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMEFF2 MUTATED 9 1 0
TMEFF2 WILD-TYPE 208 74 99
'TMEFF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0189 (Fisher's exact test), Q value = 0.081

Table S10217.  Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TMEFF2 MUTATED 4 0 5
TMEFF2 WILD-TYPE 117 108 67

Figure S3681.  Get High-res Image Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TMEFF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00191 (Fisher's exact test), Q value = 0.022

Table S10218.  Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TMEFF2 MUTATED 1 0 4 0 4
TMEFF2 WILD-TYPE 87 66 41 55 43

Figure S3682.  Get High-res Image Gene #1032: 'TMEFF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'IFNA17 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10219.  Gene #1033: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IFNA17 MUTATED 2 2 0 0
IFNA17 WILD-TYPE 202 135 47 3
'IFNA17 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S10220.  Gene #1033: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IFNA17 MUTATED 1 0 0 1 1
IFNA17 WILD-TYPE 38 96 44 87 79
'IFNA17 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 0.2

Table S10221.  Gene #1033: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IFNA17 MUTATED 1 0 1 0 2
IFNA17 WILD-TYPE 25 79 72 82 56
'IFNA17 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 0.51

Table S10222.  Gene #1033: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IFNA17 MUTATED 3 1 0 0
IFNA17 WILD-TYPE 124 50 71 69
'IFNA17 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 0.74

Table S10223.  Gene #1033: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IFNA17 MUTATED 1 0 2 1 0
IFNA17 WILD-TYPE 83 85 83 68 47
'IFNA17 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S10224.  Gene #1033: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IFNA17 MUTATED 2 0 1 1
IFNA17 WILD-TYPE 93 74 120 79
'IFNA17 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.44

Table S10225.  Gene #1033: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IFNA17 MUTATED 0 2 0 1 1 0
IFNA17 WILD-TYPE 52 62 72 103 39 59
'IFNA17 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.62

Table S10226.  Gene #1033: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IFNA17 MUTATED 2 0 2
IFNA17 WILD-TYPE 215 75 97
'IFNA17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 0.39

Table S10227.  Gene #1033: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IFNA17 MUTATED 1 0 2
IFNA17 WILD-TYPE 120 108 70
'IFNA17 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S10228.  Gene #1033: 'IFNA17 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IFNA17 MUTATED 0 0 1 1 1
IFNA17 WILD-TYPE 88 66 44 54 46
'PGBD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S10229.  Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PGBD1 MUTATED 0 10 4 0
PGBD1 WILD-TYPE 204 127 43 3

Figure S3683.  Get High-res Image Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PGBD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0659 (Fisher's exact test), Q value = 0.17

Table S10230.  Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PGBD1 MUTATED 1 6 2 0 1
PGBD1 WILD-TYPE 38 90 42 88 79
'PGBD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0244 (Fisher's exact test), Q value = 0.095

Table S10231.  Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PGBD1 MUTATED 0 4 7 0 2
PGBD1 WILD-TYPE 26 75 66 82 56

Figure S3684.  Get High-res Image Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PGBD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00025 (Fisher's exact test), Q value = 0.007

Table S10232.  Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PGBD1 MUTATED 2 8 3 0
PGBD1 WILD-TYPE 125 43 68 69

Figure S3685.  Get High-res Image Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PGBD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0826 (Fisher's exact test), Q value = 0.19

Table S10233.  Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PGBD1 MUTATED 1 1 6 1 3
PGBD1 WILD-TYPE 83 84 79 68 44
'PGBD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 0.39

Table S10234.  Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PGBD1 MUTATED 4 1 2 5
PGBD1 WILD-TYPE 91 73 119 75
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S10235.  Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PGBD1 MUTATED 2 6 2 3 1 0
PGBD1 WILD-TYPE 50 58 70 101 39 59
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0938 (Fisher's exact test), Q value = 0.21

Table S10236.  Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PGBD1 MUTATED 12 1 1
PGBD1 WILD-TYPE 205 74 98
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S10237.  Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PGBD1 MUTATED 4 1 4
PGBD1 WILD-TYPE 117 107 68
'PGBD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S10238.  Gene #1034: 'PGBD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PGBD1 MUTATED 2 1 3 0 3
PGBD1 WILD-TYPE 86 65 42 55 44
'FCN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0357 (Fisher's exact test), Q value = 0.12

Table S10239.  Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FCN2 MUTATED 2 8 0 0
FCN2 WILD-TYPE 202 129 47 3

Figure S3686.  Get High-res Image Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FCN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0883 (Fisher's exact test), Q value = 0.2

Table S10240.  Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FCN2 MUTATED 1 6 1 1 0
FCN2 WILD-TYPE 38 90 43 87 80
'FCN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 0.33

Table S10241.  Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FCN2 MUTATED 1 4 3 0 1
FCN2 WILD-TYPE 25 75 70 82 57
'FCN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00441 (Fisher's exact test), Q value = 0.036

Table S10242.  Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FCN2 MUTATED 1 5 3 0
FCN2 WILD-TYPE 126 46 68 69

Figure S3687.  Get High-res Image Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FCN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 0.49

Table S10243.  Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FCN2 MUTATED 1 3 4 0 1
FCN2 WILD-TYPE 83 82 81 69 46
'FCN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S10244.  Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FCN2 MUTATED 1 1 2 5
FCN2 WILD-TYPE 94 73 119 75
'FCN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 0.46

Table S10245.  Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FCN2 MUTATED 4 1 2 2 0 1
FCN2 WILD-TYPE 48 63 70 102 40 58
'FCN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 0.82

Table S10246.  Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FCN2 MUTATED 7 1 2
FCN2 WILD-TYPE 210 74 97
'FCN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S10247.  Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FCN2 MUTATED 4 2 2
FCN2 WILD-TYPE 117 106 70
'FCN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.55

Table S10248.  Gene #1035: 'FCN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FCN2 MUTATED 3 1 0 1 3
FCN2 WILD-TYPE 85 65 45 54 44
'PTPRJ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00386 (Fisher's exact test), Q value = 0.034

Table S10249.  Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTPRJ MUTATED 6 16 6 0
PTPRJ WILD-TYPE 198 121 41 3

Figure S3688.  Get High-res Image Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPRJ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00359 (Fisher's exact test), Q value = 0.032

Table S10250.  Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTPRJ MUTATED 0 13 5 3 2
PTPRJ WILD-TYPE 39 83 39 85 78

Figure S3689.  Get High-res Image Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PTPRJ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0378 (Fisher's exact test), Q value = 0.12

Table S10251.  Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTPRJ MUTATED 3 10 6 1 4
PTPRJ WILD-TYPE 23 69 67 81 54

Figure S3690.  Get High-res Image Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PTPRJ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.011 (Fisher's exact test), Q value = 0.06

Table S10252.  Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTPRJ MUTATED 8 9 6 1
PTPRJ WILD-TYPE 119 42 65 68

Figure S3691.  Get High-res Image Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00417 (Fisher's exact test), Q value = 0.035

Table S10253.  Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTPRJ MUTATED 1 3 13 5 4
PTPRJ WILD-TYPE 83 82 72 64 43

Figure S3692.  Get High-res Image Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PTPRJ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.27

Table S10254.  Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTPRJ MUTATED 9 3 5 9
PTPRJ WILD-TYPE 86 71 116 71
'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00425 (Fisher's exact test), Q value = 0.035

Table S10255.  Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTPRJ MUTATED 5 12 5 4 1 1
PTPRJ WILD-TYPE 47 52 67 100 39 58

Figure S3693.  Get High-res Image Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00305 (Fisher's exact test), Q value = 0.029

Table S10256.  Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTPRJ MUTATED 24 2 2
PTPRJ WILD-TYPE 193 73 97

Figure S3694.  Get High-res Image Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00151 (Fisher's exact test), Q value = 0.02

Table S10257.  Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTPRJ MUTATED 5 3 12
PTPRJ WILD-TYPE 116 105 60

Figure S3695.  Get High-res Image Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PTPRJ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00375 (Fisher's exact test), Q value = 0.033

Table S10258.  Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTPRJ MUTATED 8 1 7 0 4
PTPRJ WILD-TYPE 80 65 38 55 43

Figure S3696.  Get High-res Image Gene #1036: 'PTPRJ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C11ORF63 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 0.36

Table S10259.  Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C11ORF63 MUTATED 9 10 0 0
C11ORF63 WILD-TYPE 195 127 47 3
'C11ORF63 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00892 (Fisher's exact test), Q value = 0.053

Table S10260.  Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C11ORF63 MUTATED 1 11 2 4 0
C11ORF63 WILD-TYPE 38 85 42 84 80

Figure S3697.  Get High-res Image Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C11ORF63 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.68

Table S10261.  Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C11ORF63 MUTATED 1 5 6 2 3
C11ORF63 WILD-TYPE 25 74 67 80 55
'C11ORF63 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S10262.  Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C11ORF63 MUTATED 4 8 3 2
C11ORF63 WILD-TYPE 123 43 68 67

Figure S3698.  Get High-res Image Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 0.34

Table S10263.  Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C11ORF63 MUTATED 2 4 8 2 4
C11ORF63 WILD-TYPE 82 81 77 67 43
'C11ORF63 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00684 (Fisher's exact test), Q value = 0.046

Table S10264.  Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C11ORF63 MUTATED 4 2 3 11
C11ORF63 WILD-TYPE 91 72 118 69

Figure S3699.  Get High-res Image Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0524 (Fisher's exact test), Q value = 0.15

Table S10265.  Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C11ORF63 MUTATED 6 6 4 2 1 1
C11ORF63 WILD-TYPE 46 58 68 102 39 58
'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 0.098

Table S10266.  Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C11ORF63 MUTATED 17 1 2
C11ORF63 WILD-TYPE 200 74 97

Figure S3700.  Get High-res Image Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00169 (Fisher's exact test), Q value = 0.021

Table S10267.  Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C11ORF63 MUTATED 10 0 6
C11ORF63 WILD-TYPE 111 108 66

Figure S3701.  Get High-res Image Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'C11ORF63 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0123 (Fisher's exact test), Q value = 0.064

Table S10268.  Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C11ORF63 MUTATED 5 0 4 1 6
C11ORF63 WILD-TYPE 83 66 41 54 41

Figure S3702.  Get High-res Image Gene #1037: 'C11ORF63 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HSF4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00256 (Fisher's exact test), Q value = 0.027

Table S10269.  Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HSF4 MUTATED 0 8 0 0
HSF4 WILD-TYPE 204 129 47 3

Figure S3703.  Get High-res Image Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HSF4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00779 (Fisher's exact test), Q value = 0.049

Table S10270.  Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HSF4 MUTATED 0 6 2 0 0
HSF4 WILD-TYPE 39 90 42 88 80

Figure S3704.  Get High-res Image Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HSF4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S10271.  Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HSF4 MUTATED 0 5 2 0 1
HSF4 WILD-TYPE 26 74 71 82 57
'HSF4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00593 (Fisher's exact test), Q value = 0.043

Table S10272.  Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HSF4 MUTATED 0 4 3 1
HSF4 WILD-TYPE 127 47 68 68

Figure S3705.  Get High-res Image Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HSF4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S10273.  Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HSF4 MUTATED 0 2 4 0 1
HSF4 WILD-TYPE 84 83 81 69 46
'HSF4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0333 (Fisher's exact test), Q value = 0.11

Table S10274.  Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HSF4 MUTATED 1 2 0 4
HSF4 WILD-TYPE 94 72 121 76

Figure S3706.  Get High-res Image Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HSF4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0861 (Fisher's exact test), Q value = 0.2

Table S10275.  Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HSF4 MUTATED 3 3 0 2 0 0
HSF4 WILD-TYPE 49 61 72 102 40 59
'HSF4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S10276.  Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HSF4 MUTATED 7 1 0
HSF4 WILD-TYPE 210 74 99
'HSF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S10277.  Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HSF4 MUTATED 3 2 3
HSF4 WILD-TYPE 118 106 69
'HSF4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.525 (Fisher's exact test), Q value = 0.63

Table S10278.  Gene #1038: 'HSF4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HSF4 MUTATED 3 1 2 0 2
HSF4 WILD-TYPE 85 65 43 55 45
'CNPY4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.69

Table S10279.  Gene #1039: 'CNPY4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CNPY4 MUTATED 2 1 1 0
CNPY4 WILD-TYPE 202 136 46 3
'CNPY4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.24

Table S10280.  Gene #1039: 'CNPY4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CNPY4 MUTATED 1 0 2 0 1
CNPY4 WILD-TYPE 25 79 71 82 57
'CNPY4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S10281.  Gene #1039: 'CNPY4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CNPY4 MUTATED 4 0 0 0
CNPY4 WILD-TYPE 123 51 71 69
'CNPY4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S10282.  Gene #1039: 'CNPY4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CNPY4 MUTATED 2 0 0 1 1
CNPY4 WILD-TYPE 82 85 85 68 46
'CNPY4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 0.95

Table S10283.  Gene #1039: 'CNPY4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CNPY4 MUTATED 1 0 2 1
CNPY4 WILD-TYPE 94 74 119 79
'CNPY4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S10284.  Gene #1039: 'CNPY4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CNPY4 MUTATED 1 2 0 0 0 1
CNPY4 WILD-TYPE 51 62 72 104 40 58
'CNPY4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 0.62

Table S10285.  Gene #1039: 'CNPY4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CNPY4 MUTATED 2 0 2
CNPY4 WILD-TYPE 215 75 97
'FAM167A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00466 (Fisher's exact test), Q value = 0.037

Table S10286.  Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM167A MUTATED 0 7 1 0
FAM167A WILD-TYPE 204 130 46 3

Figure S3707.  Get High-res Image Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM167A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.064

Table S10287.  Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAM167A MUTATED 0 6 1 0 0
FAM167A WILD-TYPE 39 90 43 88 80

Figure S3708.  Get High-res Image Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FAM167A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S10288.  Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM167A MUTATED 0 2 4 0 1
FAM167A WILD-TYPE 26 77 69 82 57
'FAM167A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00407 (Fisher's exact test), Q value = 0.034

Table S10289.  Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM167A MUTATED 1 5 1 0
FAM167A WILD-TYPE 126 46 70 69

Figure S3709.  Get High-res Image Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM167A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S10290.  Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM167A MUTATED 0 2 3 0 2
FAM167A WILD-TYPE 84 83 82 69 45
'FAM167A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0167 (Fisher's exact test), Q value = 0.075

Table S10291.  Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM167A MUTATED 3 0 0 4
FAM167A WILD-TYPE 92 74 121 76

Figure S3710.  Get High-res Image Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FAM167A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S10292.  Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM167A MUTATED 2 2 3 0 1 0
FAM167A WILD-TYPE 50 62 69 104 39 59
'FAM167A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S10293.  Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM167A MUTATED 7 0 1
FAM167A WILD-TYPE 210 75 98
'FAM167A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S10294.  Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAM167A MUTATED 2 1 3
FAM167A WILD-TYPE 119 107 69
'FAM167A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.066

Table S10295.  Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAM167A MUTATED 1 0 1 0 4
FAM167A WILD-TYPE 87 66 44 55 43

Figure S3711.  Get High-res Image Gene #1040: 'FAM167A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DMC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S10296.  Gene #1041: 'DMC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DMC1 MUTATED 2 5 0 0
DMC1 WILD-TYPE 202 132 47 3
'DMC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S10297.  Gene #1041: 'DMC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DMC1 MUTATED 0 5 1 0 1
DMC1 WILD-TYPE 39 91 43 88 79
'DMC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.37 (Fisher's exact test), Q value = 0.5

Table S10298.  Gene #1041: 'DMC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DMC1 MUTATED 2 1 2 1 1
DMC1 WILD-TYPE 24 78 71 81 57
'DMC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.952 (Fisher's exact test), Q value = 0.98

Table S10299.  Gene #1041: 'DMC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DMC1 MUTATED 3 1 1 2
DMC1 WILD-TYPE 124 50 70 67
'DMC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S10300.  Gene #1041: 'DMC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DMC1 MUTATED 0 3 4 0 1
DMC1 WILD-TYPE 84 82 81 69 46
'DMC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S10301.  Gene #1041: 'DMC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DMC1 MUTATED 1 3 1 3
DMC1 WILD-TYPE 94 71 120 77
'DMC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.423 (Fisher's exact test), Q value = 0.54

Table S10302.  Gene #1041: 'DMC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DMC1 MUTATED 2 3 1 2 0 0
DMC1 WILD-TYPE 50 61 71 102 40 59
'DMC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S10303.  Gene #1041: 'DMC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DMC1 MUTATED 7 1 0
DMC1 WILD-TYPE 210 74 99
'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S10304.  Gene #1041: 'DMC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DMC1 MUTATED 2 1 3
DMC1 WILD-TYPE 119 107 69
'DMC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S10305.  Gene #1041: 'DMC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DMC1 MUTATED 3 0 1 0 2
DMC1 WILD-TYPE 85 66 44 55 45
'DENND4C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0451 (Fisher's exact test), Q value = 0.13

Table S10306.  Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DENND4C MUTATED 4 11 1 0
DENND4C WILD-TYPE 200 126 46 3

Figure S3712.  Get High-res Image Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DENND4C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0401 (Fisher's exact test), Q value = 0.13

Table S10307.  Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DENND4C MUTATED 1 8 2 2 0
DENND4C WILD-TYPE 38 88 42 86 80

Figure S3713.  Get High-res Image Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DENND4C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0999 (Fisher's exact test), Q value = 0.22

Table S10308.  Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DENND4C MUTATED 1 6 3 0 2
DENND4C WILD-TYPE 25 73 70 82 56
'DENND4C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00895 (Fisher's exact test), Q value = 0.053

Table S10309.  Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DENND4C MUTATED 3 6 3 0
DENND4C WILD-TYPE 124 45 68 69

Figure S3714.  Get High-res Image Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DENND4C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.2 (Fisher's exact test), Q value = 0.33

Table S10310.  Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DENND4C MUTATED 3 2 7 2 0
DENND4C WILD-TYPE 81 83 78 67 47
'DENND4C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S10311.  Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DENND4C MUTATED 5 0 4 5
DENND4C WILD-TYPE 90 74 117 75
'DENND4C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S10312.  Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DENND4C MUTATED 4 4 2 1 2 3
DENND4C WILD-TYPE 48 60 70 103 38 56
'DENND4C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 0.52

Table S10313.  Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DENND4C MUTATED 11 1 4
DENND4C WILD-TYPE 206 74 95
'DENND4C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0684 (Fisher's exact test), Q value = 0.17

Table S10314.  Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DENND4C MUTATED 4 1 5
DENND4C WILD-TYPE 117 107 67
'DENND4C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 0.9

Table S10315.  Gene #1042: 'DENND4C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DENND4C MUTATED 4 1 2 2 1
DENND4C WILD-TYPE 84 65 43 53 46
'DEK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S10316.  Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DEK MUTATED 2 4 2 0
DEK WILD-TYPE 202 133 45 3
'DEK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0344 (Fisher's exact test), Q value = 0.12

Table S10317.  Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DEK MUTATED 4 2 0 1 1
DEK WILD-TYPE 35 94 44 87 79

Figure S3715.  Get High-res Image Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DEK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S10318.  Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DEK MUTATED 1 1 3 0 3
DEK WILD-TYPE 25 78 70 82 55
'DEK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00957 (Fisher's exact test), Q value = 0.055

Table S10319.  Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DEK MUTATED 2 5 1 0
DEK WILD-TYPE 125 46 70 69

Figure S3716.  Get High-res Image Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DEK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.15

Table S10320.  Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DEK MUTATED 1 0 5 1 0
DEK WILD-TYPE 83 85 80 68 47
'DEK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 0.29

Table S10321.  Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DEK MUTATED 1 0 2 4
DEK WILD-TYPE 94 74 119 76
'DEK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S10322.  Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DEK MUTATED 3 2 1 1 1 0
DEK WILD-TYPE 49 62 71 103 39 59
'DEK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 0.71

Table S10323.  Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DEK MUTATED 6 1 1
DEK WILD-TYPE 211 74 98
'DEK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 0.29

Table S10324.  Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DEK MUTATED 4 0 2
DEK WILD-TYPE 117 108 70
'DEK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S10325.  Gene #1043: 'DEK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DEK MUTATED 2 0 2 0 2
DEK WILD-TYPE 86 66 43 55 45
'SP140 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.747 (Fisher's exact test), Q value = 0.81

Table S10326.  Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SP140 MUTATED 7 7 2 0
SP140 WILD-TYPE 197 130 45 3
'SP140 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S10327.  Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SP140 MUTATED 0 5 1 6 1
SP140 WILD-TYPE 39 91 43 82 79
'SP140 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.24

Table S10328.  Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SP140 MUTATED 1 2 7 1 2
SP140 WILD-TYPE 25 77 66 81 56
'SP140 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S10329.  Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SP140 MUTATED 5 5 2 1
SP140 WILD-TYPE 122 46 69 68
'SP140 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 0.76

Table S10330.  Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SP140 MUTATED 3 2 5 2 3
SP140 WILD-TYPE 81 83 80 67 44
'SP140 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0437 (Fisher's exact test), Q value = 0.13

Table S10331.  Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SP140 MUTATED 4 0 4 7
SP140 WILD-TYPE 91 74 117 73

Figure S3717.  Get High-res Image Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SP140 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00783 (Fisher's exact test), Q value = 0.049

Table S10332.  Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SP140 MUTATED 6 3 2 0 1 4
SP140 WILD-TYPE 46 61 70 104 39 55

Figure S3718.  Get High-res Image Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SP140 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 0.19

Table S10333.  Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SP140 MUTATED 10 0 6
SP140 WILD-TYPE 207 75 93
'SP140 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00348 (Fisher's exact test), Q value = 0.032

Table S10334.  Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SP140 MUTATED 10 0 3
SP140 WILD-TYPE 111 108 69

Figure S3719.  Get High-res Image Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SP140 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00355 (Fisher's exact test), Q value = 0.032

Table S10335.  Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SP140 MUTATED 2 0 2 2 7
SP140 WILD-TYPE 86 66 43 53 40

Figure S3720.  Get High-res Image Gene #1044: 'SP140 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0075

Table S10336.  Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EGR1 MUTATED 0 11 1 0
EGR1 WILD-TYPE 204 126 46 3

Figure S3721.  Get High-res Image Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0352 (Fisher's exact test), Q value = 0.12

Table S10337.  Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EGR1 MUTATED 1 7 1 0 1
EGR1 WILD-TYPE 38 89 43 88 79

Figure S3722.  Get High-res Image Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EGR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S10338.  Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EGR1 MUTATED 0 3 4 0 2
EGR1 WILD-TYPE 26 76 69 82 56
'EGR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.013 (Fisher's exact test), Q value = 0.066

Table S10339.  Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EGR1 MUTATED 2 5 2 0
EGR1 WILD-TYPE 125 46 69 69

Figure S3723.  Get High-res Image Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0375 (Fisher's exact test), Q value = 0.12

Table S10340.  Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EGR1 MUTATED 0 2 6 1 3
EGR1 WILD-TYPE 84 83 79 68 44

Figure S3724.  Get High-res Image Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0455 (Fisher's exact test), Q value = 0.14

Table S10341.  Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EGR1 MUTATED 4 1 1 6
EGR1 WILD-TYPE 91 73 120 74

Figure S3725.  Get High-res Image Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.073

Table S10342.  Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EGR1 MUTATED 3 6 1 1 1 0
EGR1 WILD-TYPE 49 58 71 103 39 59

Figure S3726.  Get High-res Image Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10343.  Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EGR1 MUTATED 7 2 3
EGR1 WILD-TYPE 210 73 96
'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S10344.  Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EGR1 MUTATED 3 2 4
EGR1 WILD-TYPE 118 106 68
'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S10345.  Gene #1045: 'EGR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EGR1 MUTATED 2 1 2 0 4
EGR1 WILD-TYPE 86 65 43 55 43
'PKD2L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S10346.  Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PKD2L2 MUTATED 1 8 1 0
PKD2L2 WILD-TYPE 203 129 46 3

Figure S3727.  Get High-res Image Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PKD2L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.634 (Fisher's exact test), Q value = 0.72

Table S10347.  Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PKD2L2 MUTATED 1 4 0 3 1
PKD2L2 WILD-TYPE 38 92 44 85 79
'PKD2L2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 0.3

Table S10348.  Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PKD2L2 MUTATED 1 1 2 0 3
PKD2L2 WILD-TYPE 25 78 71 82 55
'PKD2L2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S10349.  Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PKD2L2 MUTATED 2 3 1 1
PKD2L2 WILD-TYPE 125 48 70 68
'PKD2L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0355 (Fisher's exact test), Q value = 0.12

Table S10350.  Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PKD2L2 MUTATED 1 0 6 1 1
PKD2L2 WILD-TYPE 83 85 79 68 46

Figure S3728.  Get High-res Image Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PKD2L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.076

Table S10351.  Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PKD2L2 MUTATED 1 0 2 6
PKD2L2 WILD-TYPE 94 74 119 74

Figure S3729.  Get High-res Image Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PKD2L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 0.34

Table S10352.  Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PKD2L2 MUTATED 4 2 2 1 0 1
PKD2L2 WILD-TYPE 48 62 70 103 40 58
'PKD2L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0885 (Fisher's exact test), Q value = 0.2

Table S10353.  Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PKD2L2 MUTATED 9 0 1
PKD2L2 WILD-TYPE 208 75 98
'PKD2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.41

Table S10354.  Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PKD2L2 MUTATED 5 1 3
PKD2L2 WILD-TYPE 116 107 69
'PKD2L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0864 (Fisher's exact test), Q value = 0.2

Table S10355.  Gene #1046: 'PKD2L2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PKD2L2 MUTATED 2 0 2 1 4
PKD2L2 WILD-TYPE 86 66 43 54 43
'FGF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.083

Table S10356.  Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FGF13 MUTATED 3 11 1 0
FGF13 WILD-TYPE 201 126 46 3

Figure S3730.  Get High-res Image Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FGF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S10357.  Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FGF13 MUTATED 1 5 4 2 1
FGF13 WILD-TYPE 38 91 40 86 79
'FGF13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 0.66

Table S10358.  Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FGF13 MUTATED 2 4 3 2 1
FGF13 WILD-TYPE 24 75 70 80 57
'FGF13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S10359.  Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FGF13 MUTATED 4 4 3 1
FGF13 WILD-TYPE 123 47 68 68
'FGF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0399 (Fisher's exact test), Q value = 0.13

Table S10360.  Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FGF13 MUTATED 1 2 8 1 3
FGF13 WILD-TYPE 83 83 77 68 44

Figure S3731.  Get High-res Image Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FGF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S10361.  Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FGF13 MUTATED 4 2 3 6
FGF13 WILD-TYPE 91 72 118 74
'FGF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00646 (Fisher's exact test), Q value = 0.044

Table S10362.  Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FGF13 MUTATED 4 6 1 0 1 3
FGF13 WILD-TYPE 48 58 71 104 39 56

Figure S3732.  Get High-res Image Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FGF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.372 (Fisher's exact test), Q value = 0.5

Table S10363.  Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FGF13 MUTATED 11 1 3
FGF13 WILD-TYPE 206 74 96
'FGF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 0.44

Table S10364.  Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FGF13 MUTATED 7 2 3
FGF13 WILD-TYPE 114 106 69
'FGF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S10365.  Gene #1047: 'FGF13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FGF13 MUTATED 4 0 3 2 3
FGF13 WILD-TYPE 84 66 42 53 44
'MAP4K5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.16

Table S10366.  Gene #1048: 'MAP4K5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAP4K5 MUTATED 0 4 0 0
MAP4K5 WILD-TYPE 204 133 47 3
'MAP4K5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S10367.  Gene #1048: 'MAP4K5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAP4K5 MUTATED 0 2 1 0 0
MAP4K5 WILD-TYPE 39 94 43 88 80
'MAP4K5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.77

Table S10368.  Gene #1048: 'MAP4K5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAP4K5 MUTATED 0 2 1 0 1
MAP4K5 WILD-TYPE 26 77 72 82 57
'MAP4K5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0121 (Fisher's exact test), Q value = 0.063

Table S10369.  Gene #1048: 'MAP4K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAP4K5 MUTATED 0 3 1 0
MAP4K5 WILD-TYPE 127 48 70 69

Figure S3733.  Get High-res Image Gene #1048: 'MAP4K5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP4K5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0848 (Fisher's exact test), Q value = 0.2

Table S10370.  Gene #1048: 'MAP4K5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAP4K5 MUTATED 0 0 3 0 0
MAP4K5 WILD-TYPE 84 85 82 69 47
'MAP4K5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10371.  Gene #1048: 'MAP4K5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAP4K5 MUTATED 1 0 1 1
MAP4K5 WILD-TYPE 94 74 120 79
'MAP4K5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0578 (Fisher's exact test), Q value = 0.16

Table S10372.  Gene #1048: 'MAP4K5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAP4K5 MUTATED 0 3 1 0 0 0
MAP4K5 WILD-TYPE 52 61 71 104 40 59
'MAP4K5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S10373.  Gene #1048: 'MAP4K5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAP4K5 MUTATED 4 0 0
MAP4K5 WILD-TYPE 213 75 99
'ARID5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.37

Table S10374.  Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARID5B MUTATED 5 9 1 0
ARID5B WILD-TYPE 199 128 46 3
'ARID5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S10375.  Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARID5B MUTATED 1 6 2 1 1
ARID5B WILD-TYPE 38 90 42 87 79
'ARID5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 0.18

Table S10376.  Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARID5B MUTATED 1 6 5 0 3
ARID5B WILD-TYPE 25 73 68 82 55
'ARID5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0228 (Fisher's exact test), Q value = 0.091

Table S10377.  Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARID5B MUTATED 6 6 3 0
ARID5B WILD-TYPE 121 45 68 69

Figure S3734.  Get High-res Image Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARID5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S10378.  Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARID5B MUTATED 2 3 7 1 2
ARID5B WILD-TYPE 82 82 78 68 45
'ARID5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S10379.  Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARID5B MUTATED 3 3 2 7
ARID5B WILD-TYPE 92 71 119 73
'ARID5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 0.79

Table S10380.  Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARID5B MUTATED 2 5 2 3 1 2
ARID5B WILD-TYPE 50 59 70 101 39 57
'ARID5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0349 (Fisher's exact test), Q value = 0.12

Table S10381.  Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARID5B MUTATED 13 0 2
ARID5B WILD-TYPE 204 75 97

Figure S3735.  Get High-res Image Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S10382.  Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARID5B MUTATED 5 1 4
ARID5B WILD-TYPE 116 107 68
'ARID5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.039 (Fisher's exact test), Q value = 0.12

Table S10383.  Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARID5B MUTATED 4 0 2 0 4
ARID5B WILD-TYPE 84 66 43 55 43

Figure S3736.  Get High-res Image Gene #1049: 'ARID5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CCDC92 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.34

Table S10384.  Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCDC92 MUTATED 1 4 1 0
CCDC92 WILD-TYPE 203 133 46 3
'CCDC92 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0844 (Fisher's exact test), Q value = 0.2

Table S10385.  Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCDC92 MUTATED 0 5 0 1 0
CCDC92 WILD-TYPE 39 91 44 87 80
'CCDC92 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S10386.  Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCDC92 MUTATED 0 1 1 0 1
CCDC92 WILD-TYPE 26 78 72 82 57
'CCDC92 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00409 (Fisher's exact test), Q value = 0.034

Table S10387.  Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCDC92 MUTATED 0 3 0 0
CCDC92 WILD-TYPE 127 48 71 69

Figure S3737.  Get High-res Image Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC92 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0145 (Fisher's exact test), Q value = 0.07

Table S10388.  Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCDC92 MUTATED 1 0 5 0 0
CCDC92 WILD-TYPE 83 85 80 69 47

Figure S3738.  Get High-res Image Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC92 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 0.17

Table S10389.  Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCDC92 MUTATED 1 0 1 4
CCDC92 WILD-TYPE 94 74 120 76
'CCDC92 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S10390.  Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCDC92 MUTATED 2 2 2 0 0 1
CCDC92 WILD-TYPE 50 62 70 104 40 58
'CCDC92 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S10391.  Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCDC92 MUTATED 6 0 1
CCDC92 WILD-TYPE 211 75 98
'CCDC92 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.35

Table S10392.  Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCDC92 MUTATED 3 0 2
CCDC92 WILD-TYPE 118 108 70
'CCDC92 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.17

Table S10393.  Gene #1050: 'CCDC92 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCDC92 MUTATED 1 0 1 0 3
CCDC92 WILD-TYPE 87 66 44 55 44
'CNGA1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S10394.  Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CNGA1 MUTATED 1 8 1 0
CNGA1 WILD-TYPE 203 129 46 3

Figure S3739.  Get High-res Image Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CNGA1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.14

Table S10395.  Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CNGA1 MUTATED 1 6 0 1 0
CNGA1 WILD-TYPE 38 90 44 87 80

Figure S3740.  Get High-res Image Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CNGA1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S10396.  Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CNGA1 MUTATED 1 3 2 1 2
CNGA1 WILD-TYPE 25 76 71 81 56
'CNGA1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0017 (Fisher's exact test), Q value = 0.021

Table S10397.  Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CNGA1 MUTATED 2 6 1 0
CNGA1 WILD-TYPE 125 45 70 69

Figure S3741.  Get High-res Image Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CNGA1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0263 (Fisher's exact test), Q value = 0.1

Table S10398.  Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CNGA1 MUTATED 2 0 5 0 0
CNGA1 WILD-TYPE 82 85 80 69 47

Figure S3742.  Get High-res Image Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CNGA1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S10399.  Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CNGA1 MUTATED 2 0 1 4
CNGA1 WILD-TYPE 93 74 120 76
'CNGA1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.57

Table S10400.  Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CNGA1 MUTATED 2 3 3 1 0 1
CNGA1 WILD-TYPE 50 61 69 103 40 58
'CNGA1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0895 (Fisher's exact test), Q value = 0.2

Table S10401.  Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CNGA1 MUTATED 9 0 1
CNGA1 WILD-TYPE 208 75 98
'CNGA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0558 (Fisher's exact test), Q value = 0.15

Table S10402.  Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CNGA1 MUTATED 2 1 5
CNGA1 WILD-TYPE 119 107 67
'CNGA1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0505 (Fisher's exact test), Q value = 0.14

Table S10403.  Gene #1051: 'CNGA1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CNGA1 MUTATED 1 1 2 0 4
CNGA1 WILD-TYPE 87 65 43 55 43
'RAE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.78

Table S10404.  Gene #1052: 'RAE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RAE1 MUTATED 4 4 0 0
RAE1 WILD-TYPE 200 133 47 3
'RAE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S10405.  Gene #1052: 'RAE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RAE1 MUTATED 0 3 2 1 0
RAE1 WILD-TYPE 39 93 42 87 80
'RAE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S10406.  Gene #1052: 'RAE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RAE1 MUTATED 0 1 3 2 0
RAE1 WILD-TYPE 26 78 70 80 58
'RAE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10407.  Gene #1052: 'RAE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RAE1 MUTATED 3 1 1 1
RAE1 WILD-TYPE 124 50 70 68
'RAE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10408.  Gene #1052: 'RAE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RAE1 MUTATED 2 2 2 1 1
RAE1 WILD-TYPE 82 83 83 68 46
'RAE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 0.88

Table S10409.  Gene #1052: 'RAE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RAE1 MUTATED 1 2 3 2
RAE1 WILD-TYPE 94 72 118 78
'RAE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.68

Table S10410.  Gene #1052: 'RAE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RAE1 MUTATED 3 1 1 2 0 1
RAE1 WILD-TYPE 49 63 71 102 40 58
'RAE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 0.85

Table S10411.  Gene #1052: 'RAE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RAE1 MUTATED 4 1 3
RAE1 WILD-TYPE 213 74 96
'RAE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.57

Table S10412.  Gene #1052: 'RAE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RAE1 MUTATED 3 1 0
RAE1 WILD-TYPE 118 107 72
'RAE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.913 (Fisher's exact test), Q value = 0.95

Table S10413.  Gene #1052: 'RAE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RAE1 MUTATED 2 1 0 1 0
RAE1 WILD-TYPE 86 65 45 54 47
'ZC3H8 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10414.  Gene #1053: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZC3H8 MUTATED 2 2 0 0
ZC3H8 WILD-TYPE 202 135 47 3
'ZC3H8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S10415.  Gene #1053: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZC3H8 MUTATED 1 2 0 0 0
ZC3H8 WILD-TYPE 38 94 44 88 80
'ZC3H8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.417 (Fisher's exact test), Q value = 0.53

Table S10416.  Gene #1053: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZC3H8 MUTATED 1 1 1 0 1
ZC3H8 WILD-TYPE 25 78 72 82 57
'ZC3H8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 0.94

Table S10417.  Gene #1053: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZC3H8 MUTATED 1 1 1 1
ZC3H8 WILD-TYPE 126 50 70 68
'ZC3H8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.421 (Fisher's exact test), Q value = 0.54

Table S10418.  Gene #1053: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZC3H8 MUTATED 2 0 1 0 1
ZC3H8 WILD-TYPE 82 85 84 69 46
'ZC3H8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 0.7

Table S10419.  Gene #1053: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZC3H8 MUTATED 1 0 1 2
ZC3H8 WILD-TYPE 94 74 120 78
'ZC3H8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.918 (Fisher's exact test), Q value = 0.95

Table S10420.  Gene #1053: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZC3H8 MUTATED 1 0 1 1 0 1
ZC3H8 WILD-TYPE 51 64 71 103 40 58
'ZC3H8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S10421.  Gene #1053: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZC3H8 MUTATED 1 1 2
ZC3H8 WILD-TYPE 216 74 97
'ZC3H8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10422.  Gene #1053: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZC3H8 MUTATED 1 1 1
ZC3H8 WILD-TYPE 120 107 71
'ZC3H8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S10423.  Gene #1053: 'ZC3H8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZC3H8 MUTATED 2 0 0 0 1
ZC3H8 WILD-TYPE 86 66 45 55 46
'WDR53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S10424.  Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WDR53 MUTATED 0 4 2 0
WDR53 WILD-TYPE 204 133 45 3

Figure S3743.  Get High-res Image Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WDR53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.13

Table S10425.  Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WDR53 MUTATED 2 2 2 0 0
WDR53 WILD-TYPE 37 94 42 88 80

Figure S3744.  Get High-res Image Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WDR53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S10426.  Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WDR53 MUTATED 0 2 0 0 2
WDR53 WILD-TYPE 26 77 73 82 56
'WDR53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 0.47

Table S10427.  Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WDR53 MUTATED 1 1 2 0
WDR53 WILD-TYPE 126 50 69 69
'WDR53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00081 (Fisher's exact test), Q value = 0.014

Table S10428.  Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WDR53 MUTATED 0 0 6 0 0
WDR53 WILD-TYPE 84 85 79 69 47

Figure S3745.  Get High-res Image Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WDR53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00373 (Fisher's exact test), Q value = 0.033

Table S10429.  Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WDR53 MUTATED 0 0 1 5
WDR53 WILD-TYPE 95 74 120 75

Figure S3746.  Get High-res Image Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'WDR53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S10430.  Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WDR53 MUTATED 2 2 0 2 0 0
WDR53 WILD-TYPE 50 62 72 102 40 59
'WDR53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S10431.  Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WDR53 MUTATED 6 0 0
WDR53 WILD-TYPE 211 75 99
'WDR53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 0.9

Table S10432.  Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WDR53 MUTATED 3 1 1
WDR53 WILD-TYPE 118 107 71
'WDR53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S10433.  Gene #1054: 'WDR53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WDR53 MUTATED 3 0 1 0 1
WDR53 WILD-TYPE 85 66 44 55 46
'EPB41L4B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S10434.  Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EPB41L4B MUTATED 2 15 0 0
EPB41L4B WILD-TYPE 202 122 47 3

Figure S3747.  Get High-res Image Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPB41L4B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00632 (Fisher's exact test), Q value = 0.044

Table S10435.  Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EPB41L4B MUTATED 3 8 0 0 2
EPB41L4B WILD-TYPE 36 88 44 88 78

Figure S3748.  Get High-res Image Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'EPB41L4B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.69

Table S10436.  Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EPB41L4B MUTATED 1 2 5 2 3
EPB41L4B WILD-TYPE 25 77 68 80 55
'EPB41L4B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S10437.  Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EPB41L4B MUTATED 1 9 1 2
EPB41L4B WILD-TYPE 126 42 70 67

Figure S3749.  Get High-res Image Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPB41L4B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00233 (Fisher's exact test), Q value = 0.025

Table S10438.  Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EPB41L4B MUTATED 1 5 10 0 1
EPB41L4B WILD-TYPE 83 80 75 69 46

Figure S3750.  Get High-res Image Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPB41L4B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0611 (Fisher's exact test), Q value = 0.16

Table S10439.  Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EPB41L4B MUTATED 4 3 2 8
EPB41L4B WILD-TYPE 91 71 119 72
'EPB41L4B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0212 (Fisher's exact test), Q value = 0.087

Table S10440.  Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EPB41L4B MUTATED 5 7 2 3 1 0
EPB41L4B WILD-TYPE 47 57 70 101 39 59

Figure S3751.  Get High-res Image Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPB41L4B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S10441.  Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EPB41L4B MUTATED 13 3 2
EPB41L4B WILD-TYPE 204 72 97
'EPB41L4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.701 (Fisher's exact test), Q value = 0.78

Table S10442.  Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EPB41L4B MUTATED 6 3 3
EPB41L4B WILD-TYPE 115 105 69
'EPB41L4B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S10443.  Gene #1055: 'EPB41L4B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EPB41L4B MUTATED 4 2 3 0 3
EPB41L4B WILD-TYPE 84 64 42 55 44
'RNMT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00538 (Fisher's exact test), Q value = 0.04

Table S10444.  Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RNMT MUTATED 0 7 1 0
RNMT WILD-TYPE 204 130 46 3

Figure S3752.  Get High-res Image Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RNMT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.47

Table S10445.  Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RNMT MUTATED 1 2 2 0 2
RNMT WILD-TYPE 38 94 42 88 78
'RNMT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.41

Table S10446.  Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RNMT MUTATED 1 3 1 0 2
RNMT WILD-TYPE 25 76 72 82 56
'RNMT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 0.073

Table S10447.  Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RNMT MUTATED 1 4 2 0
RNMT WILD-TYPE 126 47 69 69

Figure S3753.  Get High-res Image Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RNMT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.017

Table S10448.  Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RNMT MUTATED 0 1 7 0 0
RNMT WILD-TYPE 84 84 78 69 47

Figure S3754.  Get High-res Image Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RNMT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S10449.  Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RNMT MUTATED 1 2 2 3
RNMT WILD-TYPE 94 72 119 77
'RNMT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00146 (Fisher's exact test), Q value = 0.019

Table S10450.  Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RNMT MUTATED 1 6 1 0 0 0
RNMT WILD-TYPE 51 58 71 104 40 59

Figure S3755.  Get High-res Image Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RNMT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S10451.  Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RNMT MUTATED 7 1 0
RNMT WILD-TYPE 210 74 99
'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00737 (Fisher's exact test), Q value = 0.048

Table S10452.  Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RNMT MUTATED 2 0 5
RNMT WILD-TYPE 119 108 67

Figure S3756.  Get High-res Image Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RNMT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0252 (Fisher's exact test), Q value = 0.097

Table S10453.  Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RNMT MUTATED 2 0 4 0 1
RNMT WILD-TYPE 86 66 41 55 46

Figure S3757.  Get High-res Image Gene #1056: 'RNMT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SUCNR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.16

Table S10454.  Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SUCNR1 MUTATED 0 4 0 0
SUCNR1 WILD-TYPE 204 133 47 3
'SUCNR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S10455.  Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SUCNR1 MUTATED 0 2 1 0 0
SUCNR1 WILD-TYPE 39 94 43 88 80
'SUCNR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 0.51

Table S10456.  Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SUCNR1 MUTATED 0 2 2 0 0
SUCNR1 WILD-TYPE 26 77 71 82 58
'SUCNR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S10457.  Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SUCNR1 MUTATED 1 1 2 0
SUCNR1 WILD-TYPE 126 50 69 69
'SUCNR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 0.6

Table S10458.  Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SUCNR1 MUTATED 0 1 2 0 1
SUCNR1 WILD-TYPE 84 84 83 69 46
'SUCNR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0217 (Fisher's exact test), Q value = 0.088

Table S10459.  Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SUCNR1 MUTATED 0 1 0 3
SUCNR1 WILD-TYPE 95 73 121 77

Figure S3758.  Get High-res Image Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SUCNR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.47

Table S10460.  Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SUCNR1 MUTATED 2 1 0 1 0 0
SUCNR1 WILD-TYPE 50 63 72 103 40 59
'SUCNR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S10461.  Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SUCNR1 MUTATED 4 0 0
SUCNR1 WILD-TYPE 213 75 99
'SUCNR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.791 (Fisher's exact test), Q value = 0.85

Table S10462.  Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SUCNR1 MUTATED 2 1 0
SUCNR1 WILD-TYPE 119 107 72
'SUCNR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S10463.  Gene #1057: 'SUCNR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SUCNR1 MUTATED 1 0 0 0 2
SUCNR1 WILD-TYPE 87 66 45 55 45
'NYNRIN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 0.066

Table S10464.  Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NYNRIN MUTATED 3 12 2 0
NYNRIN WILD-TYPE 201 125 45 3

Figure S3759.  Get High-res Image Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NYNRIN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0162 (Fisher's exact test), Q value = 0.074

Table S10465.  Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NYNRIN MUTATED 1 8 2 1 0
NYNRIN WILD-TYPE 38 88 42 87 80

Figure S3760.  Get High-res Image Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NYNRIN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0416 (Fisher's exact test), Q value = 0.13

Table S10466.  Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NYNRIN MUTATED 0 5 6 0 2
NYNRIN WILD-TYPE 26 74 67 82 56

Figure S3761.  Get High-res Image Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NYNRIN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S10467.  Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NYNRIN MUTATED 3 9 1 0
NYNRIN WILD-TYPE 124 42 70 69

Figure S3762.  Get High-res Image Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NYNRIN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S10468.  Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NYNRIN MUTATED 1 0 12 2 1
NYNRIN WILD-TYPE 83 85 73 67 46

Figure S3763.  Get High-res Image Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NYNRIN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0143 (Fisher's exact test), Q value = 0.069

Table S10469.  Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NYNRIN MUTATED 3 2 2 9
NYNRIN WILD-TYPE 92 72 119 71

Figure S3764.  Get High-res Image Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NYNRIN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00116 (Fisher's exact test), Q value = 0.017

Table S10470.  Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NYNRIN MUTATED 4 7 5 0 0 1
NYNRIN WILD-TYPE 48 57 67 104 40 58

Figure S3765.  Get High-res Image Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NYNRIN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 0.12

Table S10471.  Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NYNRIN MUTATED 14 0 3
NYNRIN WILD-TYPE 203 75 96

Figure S3766.  Get High-res Image Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NYNRIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S10472.  Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NYNRIN MUTATED 7 1 2
NYNRIN WILD-TYPE 114 107 70
'NYNRIN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S10473.  Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NYNRIN MUTATED 4 0 1 0 5
NYNRIN WILD-TYPE 84 66 44 55 42

Figure S3767.  Get High-res Image Gene #1058: 'NYNRIN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHTF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S10474.  Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PHTF1 MUTATED 3 7 1 0
PHTF1 WILD-TYPE 201 130 46 3
'PHTF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S10475.  Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PHTF1 MUTATED 1 6 1 2 0
PHTF1 WILD-TYPE 38 90 43 86 80
'PHTF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0462 (Fisher's exact test), Q value = 0.14

Table S10476.  Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PHTF1 MUTATED 0 2 6 0 2
PHTF1 WILD-TYPE 26 77 67 82 56

Figure S3768.  Get High-res Image Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PHTF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0048 (Fisher's exact test), Q value = 0.038

Table S10477.  Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PHTF1 MUTATED 3 6 1 0
PHTF1 WILD-TYPE 124 45 70 69

Figure S3769.  Get High-res Image Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PHTF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0283 (Fisher's exact test), Q value = 0.1

Table S10478.  Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PHTF1 MUTATED 1 0 6 1 2
PHTF1 WILD-TYPE 83 85 79 68 45

Figure S3770.  Get High-res Image Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PHTF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0115 (Fisher's exact test), Q value = 0.061

Table S10479.  Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PHTF1 MUTATED 3 0 1 6
PHTF1 WILD-TYPE 92 74 120 74

Figure S3771.  Get High-res Image Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PHTF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.18

Table S10480.  Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PHTF1 MUTATED 3 2 4 0 0 2
PHTF1 WILD-TYPE 49 62 68 104 40 57
'PHTF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S10481.  Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PHTF1 MUTATED 9 0 2
PHTF1 WILD-TYPE 208 75 97
'PHTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0337 (Fisher's exact test), Q value = 0.11

Table S10482.  Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PHTF1 MUTATED 5 0 4
PHTF1 WILD-TYPE 116 108 68

Figure S3772.  Get High-res Image Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PHTF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 0.1

Table S10483.  Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PHTF1 MUTATED 2 0 1 1 5
PHTF1 WILD-TYPE 86 66 44 54 42

Figure S3773.  Get High-res Image Gene #1059: 'PHTF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CARD14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00072 (Fisher's exact test), Q value = 0.013

Table S10484.  Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CARD14 MUTATED 1 11 0 0
CARD14 WILD-TYPE 203 126 47 3

Figure S3774.  Get High-res Image Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CARD14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S10485.  Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CARD14 MUTATED 1 5 1 1 1
CARD14 WILD-TYPE 38 91 43 87 79
'CARD14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S10486.  Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CARD14 MUTATED 1 4 3 0 3
CARD14 WILD-TYPE 25 75 70 82 55
'CARD14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 0.85

Table S10487.  Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CARD14 MUTATED 4 3 2 2
CARD14 WILD-TYPE 123 48 69 67
'CARD14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.657 (Fisher's exact test), Q value = 0.74

Table S10488.  Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CARD14 MUTATED 2 3 5 1 2
CARD14 WILD-TYPE 82 82 80 68 45
'CARD14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.361 (Fisher's exact test), Q value = 0.49

Table S10489.  Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CARD14 MUTATED 3 3 2 5
CARD14 WILD-TYPE 92 71 119 75
'CARD14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S10490.  Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CARD14 MUTATED 6 5 0 0 1 1
CARD14 WILD-TYPE 46 59 72 104 39 58

Figure S3775.  Get High-res Image Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CARD14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.597 (Fisher's exact test), Q value = 0.69

Table S10491.  Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CARD14 MUTATED 9 1 3
CARD14 WILD-TYPE 208 74 96
'CARD14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0488 (Fisher's exact test), Q value = 0.14

Table S10492.  Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CARD14 MUTATED 6 0 2
CARD14 WILD-TYPE 115 108 70

Figure S3776.  Get High-res Image Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CARD14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 0.42

Table S10493.  Gene #1060: 'CARD14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CARD14 MUTATED 3 0 1 1 3
CARD14 WILD-TYPE 85 66 44 54 44
'CASKIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0949 (Fisher's exact test), Q value = 0.21

Table S10494.  Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CASKIN1 MUTATED 5 11 1 0
CASKIN1 WILD-TYPE 199 126 46 3
'CASKIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.028 (Fisher's exact test), Q value = 0.1

Table S10495.  Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CASKIN1 MUTATED 3 10 1 2 1
CASKIN1 WILD-TYPE 36 86 43 86 79

Figure S3777.  Get High-res Image Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CASKIN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S10496.  Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CASKIN1 MUTATED 2 4 5 1 2
CASKIN1 WILD-TYPE 24 75 68 81 56
'CASKIN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.066

Table S10497.  Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CASKIN1 MUTATED 4 7 1 2
CASKIN1 WILD-TYPE 123 44 70 67

Figure S3778.  Get High-res Image Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CASKIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S10498.  Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CASKIN1 MUTATED 1 2 6 5 2
CASKIN1 WILD-TYPE 83 83 79 64 45
'CASKIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 0.26

Table S10499.  Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CASKIN1 MUTATED 6 2 2 6
CASKIN1 WILD-TYPE 89 72 119 74
'CASKIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S10500.  Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CASKIN1 MUTATED 5 2 3 2 4 1
CASKIN1 WILD-TYPE 47 62 69 102 36 58
'CASKIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0599 (Fisher's exact test), Q value = 0.16

Table S10501.  Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CASKIN1 MUTATED 13 0 4
CASKIN1 WILD-TYPE 204 75 95
'CASKIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S10502.  Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CASKIN1 MUTATED 9 2 3
CASKIN1 WILD-TYPE 112 106 69
'CASKIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0789 (Fisher's exact test), Q value = 0.19

Table S10503.  Gene #1061: 'CASKIN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CASKIN1 MUTATED 5 0 2 2 5
CASKIN1 WILD-TYPE 83 66 43 53 42
'C13ORF18 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10504.  Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C13ORF18 MUTATED 5 4 1 0
C13ORF18 WILD-TYPE 199 133 46 3
'C13ORF18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.5

Table S10505.  Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C13ORF18 MUTATED 0 5 1 1 1
C13ORF18 WILD-TYPE 39 91 43 87 79
'C13ORF18 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.444 (Fisher's exact test), Q value = 0.56

Table S10506.  Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C13ORF18 MUTATED 1 2 1 2 4
C13ORF18 WILD-TYPE 25 77 72 80 54
'C13ORF18 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.912 (Fisher's exact test), Q value = 0.95

Table S10507.  Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C13ORF18 MUTATED 4 1 2 3
C13ORF18 WILD-TYPE 123 50 69 66
'C13ORF18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00607 (Fisher's exact test), Q value = 0.043

Table S10508.  Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C13ORF18 MUTATED 0 3 0 3 4
C13ORF18 WILD-TYPE 84 82 85 66 43

Figure S3779.  Get High-res Image Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C13ORF18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.014 (Fisher's exact test), Q value = 0.068

Table S10509.  Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C13ORF18 MUTATED 5 4 0 1
C13ORF18 WILD-TYPE 90 70 121 79

Figure S3780.  Get High-res Image Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C13ORF18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.12

Table S10510.  Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C13ORF18 MUTATED 1 2 0 3 4 0
C13ORF18 WILD-TYPE 51 62 72 101 36 59

Figure S3781.  Get High-res Image Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'C13ORF18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 0.54

Table S10511.  Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C13ORF18 MUTATED 6 3 1
C13ORF18 WILD-TYPE 211 72 98
'C13ORF18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10512.  Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C13ORF18 MUTATED 3 3 2
C13ORF18 WILD-TYPE 118 105 70
'C13ORF18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S10513.  Gene #1062: 'C13ORF18 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C13ORF18 MUTATED 2 2 1 0 3
C13ORF18 WILD-TYPE 86 64 44 55 44
'CCDC37 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00031 (Fisher's exact test), Q value = 0.0079

Table S10514.  Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CCDC37 MUTATED 1 12 0 0
CCDC37 WILD-TYPE 203 125 47 3

Figure S3782.  Get High-res Image Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CCDC37 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S10515.  Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CCDC37 MUTATED 0 7 2 0 1
CCDC37 WILD-TYPE 39 89 42 88 79

Figure S3783.  Get High-res Image Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CCDC37 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00341 (Fisher's exact test), Q value = 0.032

Table S10516.  Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CCDC37 MUTATED 1 8 4 0 0
CCDC37 WILD-TYPE 25 71 69 82 58

Figure S3784.  Get High-res Image Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CCDC37 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0046

Table S10517.  Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CCDC37 MUTATED 1 7 5 0
CCDC37 WILD-TYPE 126 44 66 69

Figure S3785.  Get High-res Image Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CCDC37 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00302 (Fisher's exact test), Q value = 0.029

Table S10518.  Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CCDC37 MUTATED 0 3 8 0 1
CCDC37 WILD-TYPE 84 82 77 69 46

Figure S3786.  Get High-res Image Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CCDC37 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00287 (Fisher's exact test), Q value = 0.029

Table S10519.  Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CCDC37 MUTATED 1 2 1 8
CCDC37 WILD-TYPE 94 72 120 72

Figure S3787.  Get High-res Image Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CCDC37 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0037 (Fisher's exact test), Q value = 0.033

Table S10520.  Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CCDC37 MUTATED 4 7 1 2 0 0
CCDC37 WILD-TYPE 48 57 71 102 40 59

Figure S3788.  Get High-res Image Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CCDC37 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00146 (Fisher's exact test), Q value = 0.019

Table S10521.  Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CCDC37 MUTATED 14 0 0
CCDC37 WILD-TYPE 203 75 99

Figure S3789.  Get High-res Image Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CCDC37 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 0.47

Table S10522.  Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CCDC37 MUTATED 4 1 3
CCDC37 WILD-TYPE 117 107 69
'CCDC37 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0406 (Fisher's exact test), Q value = 0.13

Table S10523.  Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CCDC37 MUTATED 2 0 3 0 3
CCDC37 WILD-TYPE 86 66 42 55 44

Figure S3790.  Get High-res Image Gene #1063: 'CCDC37 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ETV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S10524.  Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ETV1 MUTATED 2 6 0 0
ETV1 WILD-TYPE 202 131 47 3
'ETV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S10525.  Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ETV1 MUTATED 1 4 0 1 0
ETV1 WILD-TYPE 38 92 44 87 80
'ETV1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S10526.  Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ETV1 MUTATED 0 4 2 0 2
ETV1 WILD-TYPE 26 75 71 82 56
'ETV1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00023 (Fisher's exact test), Q value = 0.0067

Table S10527.  Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ETV1 MUTATED 0 5 3 0
ETV1 WILD-TYPE 127 46 68 69

Figure S3791.  Get High-res Image Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ETV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0292 (Fisher's exact test), Q value = 0.11

Table S10528.  Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ETV1 MUTATED 1 0 5 0 1
ETV1 WILD-TYPE 83 85 80 69 46

Figure S3792.  Get High-res Image Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ETV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0163 (Fisher's exact test), Q value = 0.074

Table S10529.  Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ETV1 MUTATED 0 1 1 5
ETV1 WILD-TYPE 95 73 120 75

Figure S3793.  Get High-res Image Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ETV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S10530.  Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ETV1 MUTATED 3 2 1 1 0 1
ETV1 WILD-TYPE 49 62 71 103 40 58
'ETV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.6

Table S10531.  Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ETV1 MUTATED 6 0 2
ETV1 WILD-TYPE 211 75 97
'ETV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S10532.  Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ETV1 MUTATED 3 0 3
ETV1 WILD-TYPE 118 108 69
'ETV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.65

Table S10533.  Gene #1064: 'ETV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ETV1 MUTATED 2 0 1 1 2
ETV1 WILD-TYPE 86 66 44 54 45
'TSPAN13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.16

Table S10534.  Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TSPAN13 MUTATED 0 4 0 0
TSPAN13 WILD-TYPE 204 133 47 3
'TSPAN13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 0.75

Table S10535.  Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TSPAN13 MUTATED 0 2 1 0 1
TSPAN13 WILD-TYPE 39 94 43 88 79
'TSPAN13 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S10536.  Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TSPAN13 MUTATED 1 0 1 0 1
TSPAN13 WILD-TYPE 25 79 72 82 57
'TSPAN13 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S10537.  Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TSPAN13 MUTATED 1 1 0 1
TSPAN13 WILD-TYPE 126 50 71 68
'TSPAN13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.5

Table S10538.  Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TSPAN13 MUTATED 0 2 2 0 0
TSPAN13 WILD-TYPE 84 83 83 69 47
'TSPAN13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.74

Table S10539.  Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TSPAN13 MUTATED 2 1 1 0
TSPAN13 WILD-TYPE 93 73 120 80
'TSPAN13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S10540.  Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TSPAN13 MUTATED 0 3 0 0 1 0
TSPAN13 WILD-TYPE 52 61 72 104 39 59

Figure S3794.  Get High-res Image Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TSPAN13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 0.87

Table S10541.  Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TSPAN13 MUTATED 3 0 1
TSPAN13 WILD-TYPE 214 75 98
'TSPAN13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0389 (Fisher's exact test), Q value = 0.12

Table S10542.  Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TSPAN13 MUTATED 0 1 3
TSPAN13 WILD-TYPE 121 107 69

Figure S3795.  Get High-res Image Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TSPAN13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S10543.  Gene #1065: 'TSPAN13 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TSPAN13 MUTATED 2 0 2 0 0
TSPAN13 WILD-TYPE 86 66 43 55 47
'MAP1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00701 (Fisher's exact test), Q value = 0.046

Table S10544.  Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MAP1A MUTATED 4 14 1 0
MAP1A WILD-TYPE 200 123 46 3

Figure S3796.  Get High-res Image Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00066 (Fisher's exact test), Q value = 0.012

Table S10545.  Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MAP1A MUTATED 0 12 1 1 1
MAP1A WILD-TYPE 39 84 43 87 79

Figure S3797.  Get High-res Image Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0312 (Fisher's exact test), Q value = 0.11

Table S10546.  Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MAP1A MUTATED 2 4 7 0 4
MAP1A WILD-TYPE 24 75 66 82 54

Figure S3798.  Get High-res Image Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'MAP1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00096 (Fisher's exact test), Q value = 0.015

Table S10547.  Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MAP1A MUTATED 6 9 1 1
MAP1A WILD-TYPE 121 42 70 68

Figure S3799.  Get High-res Image Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00198 (Fisher's exact test), Q value = 0.023

Table S10548.  Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MAP1A MUTATED 2 0 10 5 1
MAP1A WILD-TYPE 82 85 75 64 46

Figure S3800.  Get High-res Image Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MAP1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00615 (Fisher's exact test), Q value = 0.043

Table S10549.  Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MAP1A MUTATED 7 0 3 8
MAP1A WILD-TYPE 88 74 118 72

Figure S3801.  Get High-res Image Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0101 (Fisher's exact test), Q value = 0.057

Table S10550.  Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MAP1A MUTATED 6 7 2 1 1 2
MAP1A WILD-TYPE 46 57 70 103 39 57

Figure S3802.  Get High-res Image Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0342 (Fisher's exact test), Q value = 0.11

Table S10551.  Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MAP1A MUTATED 15 0 4
MAP1A WILD-TYPE 202 75 95

Figure S3803.  Get High-res Image Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0474 (Fisher's exact test), Q value = 0.14

Table S10552.  Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MAP1A MUTATED 8 1 5
MAP1A WILD-TYPE 113 107 67

Figure S3804.  Get High-res Image Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MAP1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00089 (Fisher's exact test), Q value = 0.015

Table S10553.  Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MAP1A MUTATED 2 0 4 1 7
MAP1A WILD-TYPE 86 66 41 54 40

Figure S3805.  Get High-res Image Gene #1066: 'MAP1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FBXO32 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S10554.  Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FBXO32 MUTATED 1 6 0 0
FBXO32 WILD-TYPE 203 131 47 3
'FBXO32 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.21

Table S10555.  Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FBXO32 MUTATED 1 4 1 0 0
FBXO32 WILD-TYPE 38 92 43 88 80
'FBXO32 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 0.61

Table S10556.  Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FBXO32 MUTATED 0 2 2 0 2
FBXO32 WILD-TYPE 26 77 71 82 56
'FBXO32 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00039 (Fisher's exact test), Q value = 0.009

Table S10557.  Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FBXO32 MUTATED 0 5 1 0
FBXO32 WILD-TYPE 127 46 70 69

Figure S3806.  Get High-res Image Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBXO32 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S10558.  Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FBXO32 MUTATED 0 1 5 0 1
FBXO32 WILD-TYPE 84 84 80 69 46

Figure S3807.  Get High-res Image Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FBXO32 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S10559.  Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FBXO32 MUTATED 0 0 0 7
FBXO32 WILD-TYPE 95 74 121 73

Figure S3808.  Get High-res Image Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FBXO32 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00038 (Fisher's exact test), Q value = 0.0089

Table S10560.  Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FBXO32 MUTATED 5 2 0 0 0 0
FBXO32 WILD-TYPE 47 62 72 104 40 59

Figure S3809.  Get High-res Image Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FBXO32 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.075 (Fisher's exact test), Q value = 0.18

Table S10561.  Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FBXO32 MUTATED 7 0 0
FBXO32 WILD-TYPE 210 75 99
'FBXO32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S10562.  Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FBXO32 MUTATED 4 0 1
FBXO32 WILD-TYPE 117 108 71
'FBXO32 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0674 (Fisher's exact test), Q value = 0.17

Table S10563.  Gene #1067: 'FBXO32 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FBXO32 MUTATED 1 0 1 0 3
FBXO32 WILD-TYPE 87 66 44 55 44
'PRAMEF2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0943 (Fisher's exact test), Q value = 0.21

Table S10564.  Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PRAMEF2 MUTATED 5 4 0 1
PRAMEF2 WILD-TYPE 199 133 47 2
'PRAMEF2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.13

Table S10565.  Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PRAMEF2 MUTATED 1 6 0 1 0
PRAMEF2 WILD-TYPE 38 90 44 87 80

Figure S3810.  Get High-res Image Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PRAMEF2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 0.4

Table S10566.  Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PRAMEF2 MUTATED 0 4 2 0 1
PRAMEF2 WILD-TYPE 26 75 71 82 57
'PRAMEF2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0152 (Fisher's exact test), Q value = 0.072

Table S10567.  Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PRAMEF2 MUTATED 1 4 2 0
PRAMEF2 WILD-TYPE 126 47 69 69

Figure S3811.  Get High-res Image Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PRAMEF2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S10568.  Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PRAMEF2 MUTATED 1 1 3 2 3
PRAMEF2 WILD-TYPE 83 84 82 67 44
'PRAMEF2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S10569.  Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PRAMEF2 MUTATED 3 1 1 5
PRAMEF2 WILD-TYPE 92 73 120 75
'PRAMEF2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.074 (Fisher's exact test), Q value = 0.18

Table S10570.  Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PRAMEF2 MUTATED 4 0 2 1 2 1
PRAMEF2 WILD-TYPE 48 64 70 103 38 58
'PRAMEF2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.377 (Fisher's exact test), Q value = 0.5

Table S10571.  Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PRAMEF2 MUTATED 8 1 1
PRAMEF2 WILD-TYPE 209 74 98
'PRAMEF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.064 (Fisher's exact test), Q value = 0.17

Table S10572.  Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PRAMEF2 MUTATED 6 1 0
PRAMEF2 WILD-TYPE 115 107 72
'PRAMEF2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S10573.  Gene #1068: 'PRAMEF2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PRAMEF2 MUTATED 3 1 0 0 3
PRAMEF2 WILD-TYPE 85 65 45 55 44
'C20ORF195 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0709 (Fisher's exact test), Q value = 0.18

Table S10574.  Gene #1069: 'C20ORF195 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C20ORF195 MUTATED 3 4 1 1
C20ORF195 WILD-TYPE 201 133 46 2
'C20ORF195 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 0.71

Table S10575.  Gene #1069: 'C20ORF195 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C20ORF195 MUTATED 0 2 2 3 1
C20ORF195 WILD-TYPE 39 94 42 85 79
'C20ORF195 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S10576.  Gene #1069: 'C20ORF195 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C20ORF195 MUTATED 0 5 3 1 0
C20ORF195 WILD-TYPE 26 74 70 81 58
'C20ORF195 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 0.23

Table S10577.  Gene #1069: 'C20ORF195 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C20ORF195 MUTATED 3 0 5 1
C20ORF195 WILD-TYPE 124 51 66 68
'C20ORF195 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S10578.  Gene #1069: 'C20ORF195 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C20ORF195 MUTATED 0 2 1 1 3
C20ORF195 WILD-TYPE 84 83 84 68 44
'C20ORF195 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.054 (Fisher's exact test), Q value = 0.15

Table S10579.  Gene #1069: 'C20ORF195 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C20ORF195 MUTATED 2 1 0 4
C20ORF195 WILD-TYPE 93 73 121 76
'C20ORF195 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.53

Table S10580.  Gene #1069: 'C20ORF195 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C20ORF195 MUTATED 1 1 4 3 0 0
C20ORF195 WILD-TYPE 51 63 68 101 40 59
'C20ORF195 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0963 (Fisher's exact test), Q value = 0.21

Table S10581.  Gene #1069: 'C20ORF195 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C20ORF195 MUTATED 8 1 0
C20ORF195 WILD-TYPE 209 74 99
'C20ORF195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 0.83

Table S10582.  Gene #1069: 'C20ORF195 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C20ORF195 MUTATED 2 3 1
C20ORF195 WILD-TYPE 119 105 71
'C20ORF195 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 0.7

Table S10583.  Gene #1069: 'C20ORF195 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C20ORF195 MUTATED 3 2 0 0 1
C20ORF195 WILD-TYPE 85 64 45 55 46
'RERE MUTATION STATUS' versus 'CN_CNMF'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S10584.  Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RERE MUTATED 3 19 2 0
RERE WILD-TYPE 201 118 45 3

Figure S3812.  Get High-res Image Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RERE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00025 (Fisher's exact test), Q value = 0.007

Table S10585.  Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RERE MUTATED 0 13 1 1 1
RERE WILD-TYPE 39 83 43 87 79

Figure S3813.  Get High-res Image Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'RERE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 0.27

Table S10586.  Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RERE MUTATED 2 7 6 1 5
RERE WILD-TYPE 24 72 67 81 53
'RERE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00697 (Fisher's exact test), Q value = 0.046

Table S10587.  Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RERE MUTATED 7 9 4 1
RERE WILD-TYPE 120 42 67 68

Figure S3814.  Get High-res Image Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S10588.  Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RERE MUTATED 2 0 14 4 4
RERE WILD-TYPE 82 85 71 65 43

Figure S3815.  Get High-res Image Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'RERE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00163 (Fisher's exact test), Q value = 0.021

Table S10589.  Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RERE MUTATED 9 2 2 11
RERE WILD-TYPE 86 72 119 69

Figure S3816.  Get High-res Image Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RERE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00133 (Fisher's exact test), Q value = 0.018

Table S10590.  Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RERE MUTATED 4 11 5 1 1 2
RERE WILD-TYPE 48 53 67 103 39 57

Figure S3817.  Get High-res Image Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'RERE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.17

Table S10591.  Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RERE MUTATED 19 2 3
RERE WILD-TYPE 198 73 96
'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00279 (Fisher's exact test), Q value = 0.028

Table S10592.  Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RERE MUTATED 5 1 9
RERE WILD-TYPE 116 107 63

Figure S3818.  Get High-res Image Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'RERE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00215 (Fisher's exact test), Q value = 0.024

Table S10593.  Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RERE MUTATED 3 0 4 1 7
RERE WILD-TYPE 85 66 41 54 40

Figure S3819.  Get High-res Image Gene #1070: 'RERE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WFIKKN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00221 (Fisher's exact test), Q value = 0.024

Table S10594.  Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WFIKKN2 MUTATED 3 13 0 0
WFIKKN2 WILD-TYPE 201 124 47 3

Figure S3820.  Get High-res Image Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WFIKKN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0166 (Fisher's exact test), Q value = 0.075

Table S10595.  Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WFIKKN2 MUTATED 0 10 2 1 2
WFIKKN2 WILD-TYPE 39 86 42 87 78

Figure S3821.  Get High-res Image Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'WFIKKN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.548 (Fisher's exact test), Q value = 0.65

Table S10596.  Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WFIKKN2 MUTATED 1 4 4 1 3
WFIKKN2 WILD-TYPE 25 75 69 81 55
'WFIKKN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S10597.  Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WFIKKN2 MUTATED 6 4 2 1
WFIKKN2 WILD-TYPE 121 47 69 68
'WFIKKN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S10598.  Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WFIKKN2 MUTATED 1 2 5 6 2
WFIKKN2 WILD-TYPE 83 83 80 63 45
'WFIKKN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.323 (Fisher's exact test), Q value = 0.45

Table S10599.  Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WFIKKN2 MUTATED 5 2 3 6
WFIKKN2 WILD-TYPE 90 72 118 74
'WFIKKN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S10600.  Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WFIKKN2 MUTATED 6 2 4 2 1 1
WFIKKN2 WILD-TYPE 46 62 68 102 39 58
'WFIKKN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S10601.  Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WFIKKN2 MUTATED 12 2 2
WFIKKN2 WILD-TYPE 205 73 97
'WFIKKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0366 (Fisher's exact test), Q value = 0.12

Table S10602.  Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WFIKKN2 MUTATED 11 2 2
WFIKKN2 WILD-TYPE 110 106 70

Figure S3822.  Get High-res Image Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WFIKKN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00068 (Fisher's exact test), Q value = 0.013

Table S10603.  Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WFIKKN2 MUTATED 3 1 1 1 9
WFIKKN2 WILD-TYPE 85 65 44 54 38

Figure S3823.  Get High-res Image Gene #1071: 'WFIKKN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'OR1L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.569 (Fisher's exact test), Q value = 0.67

Table S10604.  Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OR1L3 MUTATED 3 4 0 0
OR1L3 WILD-TYPE 201 133 47 3
'OR1L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S10605.  Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OR1L3 MUTATED 3 3 0 0 0
OR1L3 WILD-TYPE 36 93 44 88 80

Figure S3824.  Get High-res Image Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OR1L3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 0.92

Table S10606.  Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OR1L3 MUTATED 0 1 1 1 2
OR1L3 WILD-TYPE 26 78 72 81 56
'OR1L3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 0.59

Table S10607.  Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OR1L3 MUTATED 1 2 1 1
OR1L3 WILD-TYPE 126 49 70 68
'OR1L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.19

Table S10608.  Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OR1L3 MUTATED 0 0 3 3 1
OR1L3 WILD-TYPE 84 85 82 66 46
'OR1L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.075

Table S10609.  Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OR1L3 MUTATED 3 0 0 4
OR1L3 WILD-TYPE 92 74 121 76

Figure S3825.  Get High-res Image Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OR1L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00357 (Fisher's exact test), Q value = 0.032

Table S10610.  Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OR1L3 MUTATED 5 0 1 1 0 0
OR1L3 WILD-TYPE 47 64 71 103 40 59

Figure S3826.  Get High-res Image Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OR1L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0738 (Fisher's exact test), Q value = 0.18

Table S10611.  Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OR1L3 MUTATED 7 0 0
OR1L3 WILD-TYPE 210 75 99
'OR1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0281 (Fisher's exact test), Q value = 0.1

Table S10612.  Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OR1L3 MUTATED 5 0 0
OR1L3 WILD-TYPE 116 108 72

Figure S3827.  Get High-res Image Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'OR1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S10613.  Gene #1072: 'OR1L3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OR1L3 MUTATED 4 0 0 0 1
OR1L3 WILD-TYPE 84 66 45 55 46
'MORC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.464 (Fisher's exact test), Q value = 0.58

Table S10614.  Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MORC1 MUTATED 5 7 1 0
MORC1 WILD-TYPE 199 130 46 3
'MORC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.247 (Fisher's exact test), Q value = 0.38

Table S10615.  Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MORC1 MUTATED 1 6 0 1 2
MORC1 WILD-TYPE 38 90 44 87 78
'MORC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0765 (Fisher's exact test), Q value = 0.18

Table S10616.  Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MORC1 MUTATED 2 3 2 0 4
MORC1 WILD-TYPE 24 76 71 82 54
'MORC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 0.076

Table S10617.  Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MORC1 MUTATED 3 6 1 1
MORC1 WILD-TYPE 124 45 70 68

Figure S3828.  Get High-res Image Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MORC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0135 (Fisher's exact test), Q value = 0.067

Table S10618.  Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MORC1 MUTATED 0 1 7 2 3
MORC1 WILD-TYPE 84 84 78 67 44

Figure S3829.  Get High-res Image Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MORC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 0.1

Table S10619.  Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MORC1 MUTATED 5 0 2 6
MORC1 WILD-TYPE 90 74 119 74

Figure S3830.  Get High-res Image Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MORC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S10620.  Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MORC1 MUTATED 3 5 3 0 2 0
MORC1 WILD-TYPE 49 59 69 104 38 59

Figure S3831.  Get High-res Image Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MORC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.076

Table S10621.  Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MORC1 MUTATED 12 1 0
MORC1 WILD-TYPE 205 74 99

Figure S3832.  Get High-res Image Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MORC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.12

Table S10622.  Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MORC1 MUTATED 6 0 3
MORC1 WILD-TYPE 115 108 69

Figure S3833.  Get High-res Image Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MORC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.081 (Fisher's exact test), Q value = 0.19

Table S10623.  Gene #1073: 'MORC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MORC1 MUTATED 4 0 3 0 2
MORC1 WILD-TYPE 84 66 42 55 45
'AP3B1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0308 (Fisher's exact test), Q value = 0.11

Table S10624.  Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AP3B1 MUTATED 1 7 1 0
AP3B1 WILD-TYPE 203 130 46 3

Figure S3834.  Get High-res Image Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AP3B1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 0.31

Table S10625.  Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AP3B1 MUTATED 1 5 1 1 0
AP3B1 WILD-TYPE 38 91 43 87 80
'AP3B1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0157 (Fisher's exact test), Q value = 0.073

Table S10626.  Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AP3B1 MUTATED 1 4 0 0 4
AP3B1 WILD-TYPE 25 75 73 82 54

Figure S3835.  Get High-res Image Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'AP3B1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0166 (Fisher's exact test), Q value = 0.075

Table S10627.  Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AP3B1 MUTATED 1 5 2 1
AP3B1 WILD-TYPE 126 46 69 68

Figure S3836.  Get High-res Image Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AP3B1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.09 (Fisher's exact test), Q value = 0.2

Table S10628.  Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AP3B1 MUTATED 1 0 5 1 1
AP3B1 WILD-TYPE 83 85 80 68 46
'AP3B1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0698 (Fisher's exact test), Q value = 0.17

Table S10629.  Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AP3B1 MUTATED 1 1 1 5
AP3B1 WILD-TYPE 94 73 120 75
'AP3B1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S10630.  Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AP3B1 MUTATED 3 3 2 1 0 0
AP3B1 WILD-TYPE 49 61 70 103 40 59
'AP3B1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S10631.  Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AP3B1 MUTATED 8 0 1
AP3B1 WILD-TYPE 209 75 98
'AP3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S10632.  Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AP3B1 MUTATED 3 2 3
AP3B1 WILD-TYPE 118 106 69
'AP3B1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 0.55

Table S10633.  Gene #1074: 'AP3B1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AP3B1 MUTATED 3 0 2 1 2
AP3B1 WILD-TYPE 85 66 43 54 45
'OSBPL6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 0.26

Table S10634.  Gene #1075: 'OSBPL6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OSBPL6 MUTATED 6 7 5 0
OSBPL6 WILD-TYPE 198 130 42 3
'OSBPL6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.374 (Fisher's exact test), Q value = 0.5

Table S10635.  Gene #1075: 'OSBPL6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OSBPL6 MUTATED 3 5 4 2 3
OSBPL6 WILD-TYPE 36 91 40 86 77
'OSBPL6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.51

Table S10636.  Gene #1075: 'OSBPL6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OSBPL6 MUTATED 0 4 6 2 4
OSBPL6 WILD-TYPE 26 75 67 80 54
'OSBPL6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0827 (Fisher's exact test), Q value = 0.19

Table S10637.  Gene #1075: 'OSBPL6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OSBPL6 MUTATED 7 6 2 1
OSBPL6 WILD-TYPE 120 45 69 68
'OSBPL6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.7

Table S10638.  Gene #1075: 'OSBPL6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OSBPL6 MUTATED 2 5 6 2 2
OSBPL6 WILD-TYPE 82 80 79 67 45
'OSBPL6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.42

Table S10639.  Gene #1075: 'OSBPL6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OSBPL6 MUTATED 4 2 4 7
OSBPL6 WILD-TYPE 91 72 117 73
'OSBPL6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 0.78

Table S10640.  Gene #1075: 'OSBPL6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OSBPL6 MUTATED 3 2 6 4 1 2
OSBPL6 WILD-TYPE 49 62 66 100 39 57
'OSBPL6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 0.57

Table S10641.  Gene #1075: 'OSBPL6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OSBPL6 MUTATED 13 2 3
OSBPL6 WILD-TYPE 204 73 96
'OSBPL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 0.68

Table S10642.  Gene #1075: 'OSBPL6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OSBPL6 MUTATED 6 3 4
OSBPL6 WILD-TYPE 115 105 68
'OSBPL6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.935 (Fisher's exact test), Q value = 0.97

Table S10643.  Gene #1075: 'OSBPL6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OSBPL6 MUTATED 3 3 2 2 3
OSBPL6 WILD-TYPE 85 63 43 53 44
'EFHC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0336 (Fisher's exact test), Q value = 0.11

Table S10644.  Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EFHC1 MUTATED 2 8 0 0
EFHC1 WILD-TYPE 202 129 47 3

Figure S3837.  Get High-res Image Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EFHC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S10645.  Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EFHC1 MUTATED 0 6 1 1 1
EFHC1 WILD-TYPE 39 90 43 87 79
'EFHC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S10646.  Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EFHC1 MUTATED 1 3 3 0 0
EFHC1 WILD-TYPE 25 76 70 82 58
'EFHC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.14

Table S10647.  Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EFHC1 MUTATED 1 3 3 0
EFHC1 WILD-TYPE 126 48 68 69

Figure S3838.  Get High-res Image Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EFHC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S10648.  Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EFHC1 MUTATED 1 2 6 1 0
EFHC1 WILD-TYPE 83 83 79 68 47
'EFHC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 0.87

Table S10649.  Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EFHC1 MUTATED 3 2 2 3
EFHC1 WILD-TYPE 92 72 119 77
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S10650.  Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EFHC1 MUTATED 2 3 4 1 0 0
EFHC1 WILD-TYPE 50 61 68 103 40 59
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 0.82

Table S10651.  Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EFHC1 MUTATED 7 1 2
EFHC1 WILD-TYPE 210 74 97
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S10652.  Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EFHC1 MUTATED 2 1 4
EFHC1 WILD-TYPE 119 107 68
'EFHC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00751 (Fisher's exact test), Q value = 0.048

Table S10653.  Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EFHC1 MUTATED 0 1 2 0 4
EFHC1 WILD-TYPE 88 65 43 55 43

Figure S3839.  Get High-res Image Gene #1076: 'EFHC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DTNBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 0.34

Table S10654.  Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DTNBP1 MUTATED 1 4 1 0
DTNBP1 WILD-TYPE 203 133 46 3
'DTNBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0125 (Fisher's exact test), Q value = 0.064

Table S10655.  Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DTNBP1 MUTATED 0 1 3 0 0
DTNBP1 WILD-TYPE 39 95 41 88 80

Figure S3840.  Get High-res Image Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DTNBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 0.93

Table S10656.  Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DTNBP1 MUTATED 0 2 1 1 2
DTNBP1 WILD-TYPE 26 77 72 81 56
'DTNBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S10657.  Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DTNBP1 MUTATED 1 1 1 3
DTNBP1 WILD-TYPE 126 50 70 66
'DTNBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S10658.  Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DTNBP1 MUTATED 0 3 3 0 0
DTNBP1 WILD-TYPE 84 82 82 69 47
'DTNBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 0.83

Table S10659.  Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DTNBP1 MUTATED 2 2 1 1
DTNBP1 WILD-TYPE 93 72 120 79
'DTNBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0207 (Fisher's exact test), Q value = 0.086

Table S10660.  Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DTNBP1 MUTATED 0 4 1 0 1 0
DTNBP1 WILD-TYPE 52 60 71 104 39 59

Figure S3841.  Get High-res Image Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DTNBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.65

Table S10661.  Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DTNBP1 MUTATED 5 0 1
DTNBP1 WILD-TYPE 212 75 98
'DTNBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0604 (Fisher's exact test), Q value = 0.16

Table S10662.  Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DTNBP1 MUTATED 1 0 3
DTNBP1 WILD-TYPE 120 108 69
'DTNBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S10663.  Gene #1077: 'DTNBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DTNBP1 MUTATED 2 0 2 0 0
DTNBP1 WILD-TYPE 86 66 43 55 47
'KCNH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0152 (Fisher's exact test), Q value = 0.072

Table S10664.  Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCNH1 MUTATED 4 13 3 0
KCNH1 WILD-TYPE 200 124 44 3

Figure S3842.  Get High-res Image Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KCNH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00631 (Fisher's exact test), Q value = 0.044

Table S10665.  Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCNH1 MUTATED 3 10 3 2 0
KCNH1 WILD-TYPE 36 86 41 86 80

Figure S3843.  Get High-res Image Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.105 (Fisher's exact test), Q value = 0.22

Table S10666.  Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCNH1 MUTATED 0 9 3 2 4
KCNH1 WILD-TYPE 26 70 70 80 54
'KCNH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00638 (Fisher's exact test), Q value = 0.044

Table S10667.  Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCNH1 MUTATED 3 8 5 2
KCNH1 WILD-TYPE 124 43 66 67

Figure S3844.  Get High-res Image Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KCNH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 0.14

Table S10668.  Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCNH1 MUTATED 2 1 9 4 3
KCNH1 WILD-TYPE 82 84 76 65 44

Figure S3845.  Get High-res Image Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KCNH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 0.25

Table S10669.  Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCNH1 MUTATED 7 2 3 7
KCNH1 WILD-TYPE 88 72 118 73
'KCNH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S10670.  Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCNH1 MUTATED 6 3 4 2 3 1
KCNH1 WILD-TYPE 46 61 68 102 37 58
'KCNH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0169 (Fisher's exact test), Q value = 0.076

Table S10671.  Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCNH1 MUTATED 16 0 3
KCNH1 WILD-TYPE 201 75 96

Figure S3846.  Get High-res Image Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'KCNH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 0.25

Table S10672.  Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCNH1 MUTATED 10 3 2
KCNH1 WILD-TYPE 111 105 70
'KCNH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00816 (Fisher's exact test), Q value = 0.05

Table S10673.  Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCNH1 MUTATED 7 0 1 1 6
KCNH1 WILD-TYPE 81 66 44 54 41

Figure S3847.  Get High-res Image Gene #1078: 'KCNH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'BBS10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00319 (Fisher's exact test), Q value = 0.03

Table S10674.  Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BBS10 MUTATED 0 8 1 0
BBS10 WILD-TYPE 204 129 46 3

Figure S3848.  Get High-res Image Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BBS10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.36

Table S10675.  Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BBS10 MUTATED 0 4 1 0 1
BBS10 WILD-TYPE 39 92 43 88 79
'BBS10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.677 (Fisher's exact test), Q value = 0.75

Table S10676.  Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BBS10 MUTATED 1 3 1 1 1
BBS10 WILD-TYPE 25 76 72 81 57
'BBS10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00376 (Fisher's exact test), Q value = 0.033

Table S10677.  Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BBS10 MUTATED 1 5 0 1
BBS10 WILD-TYPE 126 46 71 68

Figure S3849.  Get High-res Image Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BBS10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0822 (Fisher's exact test), Q value = 0.19

Table S10678.  Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BBS10 MUTATED 0 2 5 1 0
BBS10 WILD-TYPE 84 83 80 68 47
'BBS10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0229 (Fisher's exact test), Q value = 0.091

Table S10679.  Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BBS10 MUTATED 1 3 0 4
BBS10 WILD-TYPE 94 71 121 76

Figure S3850.  Get High-res Image Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BBS10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.482 (Fisher's exact test), Q value = 0.59

Table S10680.  Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BBS10 MUTATED 2 3 2 2 0 0
BBS10 WILD-TYPE 50 61 70 102 40 59
'BBS10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S10681.  Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BBS10 MUTATED 7 2 0
BBS10 WILD-TYPE 210 73 99
'BBS10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.27

Table S10682.  Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
BBS10 MUTATED 4 0 1
BBS10 WILD-TYPE 117 108 71
'BBS10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 0.17

Table S10683.  Gene #1079: 'BBS10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
BBS10 MUTATED 1 0 1 0 3
BBS10 WILD-TYPE 87 66 44 55 44
'SMARCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S10684.  Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SMARCC2 MUTATED 5 11 2 0
SMARCC2 WILD-TYPE 199 126 45 3
'SMARCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.606 (Fisher's exact test), Q value = 0.7

Table S10685.  Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SMARCC2 MUTATED 0 4 3 3 4
SMARCC2 WILD-TYPE 39 92 41 85 76
'SMARCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00401 (Fisher's exact test), Q value = 0.034

Table S10686.  Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SMARCC2 MUTATED 3 2 2 0 6
SMARCC2 WILD-TYPE 23 77 71 82 52

Figure S3851.  Get High-res Image Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SMARCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 0.71

Table S10687.  Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SMARCC2 MUTATED 6 2 1 4
SMARCC2 WILD-TYPE 121 49 70 65
'SMARCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0996 (Fisher's exact test), Q value = 0.22

Table S10688.  Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SMARCC2 MUTATED 7 3 6 1 0
SMARCC2 WILD-TYPE 77 82 79 68 47
'SMARCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.864 (Fisher's exact test), Q value = 0.91

Table S10689.  Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SMARCC2 MUTATED 3 3 7 4
SMARCC2 WILD-TYPE 92 71 114 76
'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.44

Table S10690.  Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SMARCC2 MUTATED 2 6 3 2 1 4
SMARCC2 WILD-TYPE 50 58 69 102 39 55
'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 0.53

Table S10691.  Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SMARCC2 MUTATED 9 2 7
SMARCC2 WILD-TYPE 208 73 92
'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 0.65

Table S10692.  Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SMARCC2 MUTATED 7 3 3
SMARCC2 WILD-TYPE 114 105 69
'SMARCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.64

Table S10693.  Gene #1080: 'SMARCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SMARCC2 MUTATED 5 1 1 4 2
SMARCC2 WILD-TYPE 83 65 44 51 45
'NRK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 0.48

Table S10694.  Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NRK MUTATED 12 13 1 0
NRK WILD-TYPE 192 124 46 3
'NRK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0601 (Fisher's exact test), Q value = 0.16

Table S10695.  Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NRK MUTATED 1 10 4 4 1
NRK WILD-TYPE 38 86 40 84 79
'NRK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0109 (Fisher's exact test), Q value = 0.059

Table S10696.  Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NRK MUTATED 2 8 8 0 4
NRK WILD-TYPE 24 71 65 82 54

Figure S3852.  Get High-res Image Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'NRK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0884 (Fisher's exact test), Q value = 0.2

Table S10697.  Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NRK MUTATED 8 8 3 3
NRK WILD-TYPE 119 43 68 66
'NRK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0925 (Fisher's exact test), Q value = 0.21

Table S10698.  Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NRK MUTATED 4 3 10 3 6
NRK WILD-TYPE 80 82 75 66 41
'NRK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00191 (Fisher's exact test), Q value = 0.022

Table S10699.  Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NRK MUTATED 5 2 5 14
NRK WILD-TYPE 90 72 116 66

Figure S3853.  Get High-res Image Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'NRK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 0.076

Table S10700.  Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NRK MUTATED 6 8 5 1 2 3
NRK WILD-TYPE 46 56 67 103 38 56

Figure S3854.  Get High-res Image Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NRK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0111 (Fisher's exact test), Q value = 0.06

Table S10701.  Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NRK MUTATED 19 0 6
NRK WILD-TYPE 198 75 93

Figure S3855.  Get High-res Image Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S10702.  Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NRK MUTATED 11 1 4
NRK WILD-TYPE 110 107 68

Figure S3856.  Get High-res Image Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'NRK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0307 (Fisher's exact test), Q value = 0.11

Table S10703.  Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NRK MUTATED 6 0 2 2 6
NRK WILD-TYPE 82 66 43 53 41

Figure S3857.  Get High-res Image Gene #1081: 'NRK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WBP11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0714 (Fisher's exact test), Q value = 0.18

Table S10704.  Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WBP11 MUTATED 0 4 1 0
WBP11 WILD-TYPE 204 133 46 3
'WBP11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10705.  Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WBP11 MUTATED 0 2 0 1 1
WBP11 WILD-TYPE 39 94 44 87 79
'WBP11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 0.41

Table S10706.  Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WBP11 MUTATED 1 2 1 0 0
WBP11 WILD-TYPE 25 77 72 82 58
'WBP11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S10707.  Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WBP11 MUTATED 2 2 0 0
WBP11 WILD-TYPE 125 49 71 69
'WBP11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0799 (Fisher's exact test), Q value = 0.19

Table S10708.  Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WBP11 MUTATED 1 0 0 1 2
WBP11 WILD-TYPE 83 85 85 68 45
'WBP11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S10709.  Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WBP11 MUTATED 2 0 0 2
WBP11 WILD-TYPE 93 74 121 78
'WBP11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 0.83

Table S10710.  Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WBP11 MUTATED 1 0 2 1 0 1
WBP11 WILD-TYPE 51 64 70 103 40 58
'WBP11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S10711.  Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WBP11 MUTATED 4 0 1
WBP11 WILD-TYPE 213 75 98
'WBP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S10712.  Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WBP11 MUTATED 2 0 2
WBP11 WILD-TYPE 119 108 70
'WBP11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00837 (Fisher's exact test), Q value = 0.051

Table S10713.  Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WBP11 MUTATED 0 0 1 0 3
WBP11 WILD-TYPE 88 66 44 55 44

Figure S3858.  Get High-res Image Gene #1082: 'WBP11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'WSB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.062

Table S10714.  Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
WSB2 MUTATED 1 8 0 0
WSB2 WILD-TYPE 203 129 47 3

Figure S3859.  Get High-res Image Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'WSB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0502 (Fisher's exact test), Q value = 0.14

Table S10715.  Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
WSB2 MUTATED 0 4 3 0 1
WSB2 WILD-TYPE 39 92 41 88 79
'WSB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0165 (Fisher's exact test), Q value = 0.075

Table S10716.  Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
WSB2 MUTATED 0 6 3 0 0
WSB2 WILD-TYPE 26 73 70 82 58

Figure S3860.  Get High-res Image Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'WSB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S10717.  Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
WSB2 MUTATED 0 6 3 0
WSB2 WILD-TYPE 127 45 68 69

Figure S3861.  Get High-res Image Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'WSB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00743 (Fisher's exact test), Q value = 0.048

Table S10718.  Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
WSB2 MUTATED 0 0 5 1 3
WSB2 WILD-TYPE 84 85 80 68 44

Figure S3862.  Get High-res Image Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'WSB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0912 (Fisher's exact test), Q value = 0.2

Table S10719.  Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
WSB2 MUTATED 2 0 2 5
WSB2 WILD-TYPE 93 74 119 75
'WSB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00931 (Fisher's exact test), Q value = 0.055

Table S10720.  Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
WSB2 MUTATED 2 5 2 0 0 0
WSB2 WILD-TYPE 50 59 70 104 40 59

Figure S3863.  Get High-res Image Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WSB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0967 (Fisher's exact test), Q value = 0.21

Table S10721.  Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
WSB2 MUTATED 8 1 0
WSB2 WILD-TYPE 209 74 99
'WSB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.008 (Fisher's exact test), Q value = 0.05

Table S10722.  Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
WSB2 MUTATED 2 0 5
WSB2 WILD-TYPE 119 108 67

Figure S3864.  Get High-res Image Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'WSB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0244 (Fisher's exact test), Q value = 0.095

Table S10723.  Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
WSB2 MUTATED 2 0 4 0 1
WSB2 WILD-TYPE 86 66 41 55 46

Figure S3865.  Get High-res Image Gene #1083: 'WSB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SET MUTATION STATUS' versus 'CN_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S10724.  Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SET MUTATED 2 5 0 0
SET WILD-TYPE 202 132 47 3
'SET MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0874 (Fisher's exact test), Q value = 0.2

Table S10725.  Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SET MUTATED 2 2 1 0 0
SET WILD-TYPE 37 94 43 88 80
'SET MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S10726.  Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SET MUTATED 1 2 1 0 2
SET WILD-TYPE 25 77 72 82 56
'SET MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.73

Table S10727.  Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SET MUTATED 3 1 2 0
SET WILD-TYPE 124 50 69 69
'SET MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.44

Table S10728.  Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SET MUTATED 1 0 3 2 0
SET WILD-TYPE 83 85 82 67 47
'SET MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S10729.  Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SET MUTATED 4 0 0 2
SET WILD-TYPE 91 74 121 78

Figure S3866.  Get High-res Image Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SET MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.776 (Fisher's exact test), Q value = 0.84

Table S10730.  Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SET MUTATED 2 1 2 1 0 1
SET WILD-TYPE 50 63 70 103 40 58
'SET MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10731.  Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SET MUTATED 4 1 2
SET WILD-TYPE 213 74 97
'SET MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10732.  Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SET MUTATED 2 1 1
SET WILD-TYPE 119 107 71
'SET MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.474 (Fisher's exact test), Q value = 0.59

Table S10733.  Gene #1084: 'SET MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SET MUTATED 1 1 0 0 2
SET WILD-TYPE 87 65 45 55 45
'CASC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.51

Table S10734.  Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CASC5 MUTATED 9 11 1 0
CASC5 WILD-TYPE 195 126 46 3
'CASC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0768 (Fisher's exact test), Q value = 0.19

Table S10735.  Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CASC5 MUTATED 3 5 3 6 0
CASC5 WILD-TYPE 36 91 41 82 80
'CASC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S10736.  Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CASC5 MUTATED 0 4 5 4 4
CASC5 WILD-TYPE 26 75 68 78 54
'CASC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0172 (Fisher's exact test), Q value = 0.077

Table S10737.  Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CASC5 MUTATED 3 7 5 2
CASC5 WILD-TYPE 124 44 66 67

Figure S3867.  Get High-res Image Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CASC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 0.78

Table S10738.  Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CASC5 MUTATED 5 4 7 2 2
CASC5 WILD-TYPE 79 81 78 67 45
'CASC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S10739.  Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CASC5 MUTATED 4 2 6 8
CASC5 WILD-TYPE 91 72 115 72
'CASC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 0.17

Table S10740.  Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CASC5 MUTATED 3 7 4 2 0 5
CASC5 WILD-TYPE 49 57 68 102 40 54
'CASC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.167 (Fisher's exact test), Q value = 0.3

Table S10741.  Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CASC5 MUTATED 15 1 5
CASC5 WILD-TYPE 202 74 94
'CASC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.598 (Fisher's exact test), Q value = 0.69

Table S10742.  Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CASC5 MUTATED 8 4 3
CASC5 WILD-TYPE 113 104 69
'CASC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 0.66

Table S10743.  Gene #1085: 'CASC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CASC5 MUTATED 5 1 3 4 2
CASC5 WILD-TYPE 83 65 42 51 45
'BEND5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.09

Table S10744.  Gene #1086: 'BEND5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
BEND5 MUTATED 0 4 2 0
BEND5 WILD-TYPE 204 133 45 3

Figure S3868.  Get High-res Image Gene #1086: 'BEND5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BEND5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S10745.  Gene #1086: 'BEND5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
BEND5 MUTATED 1 0 1 1 0
BEND5 WILD-TYPE 38 96 43 87 80
'BEND5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0251 (Fisher's exact test), Q value = 0.096

Table S10746.  Gene #1086: 'BEND5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
BEND5 MUTATED 2 3 0 0 1
BEND5 WILD-TYPE 24 76 73 82 57

Figure S3869.  Get High-res Image Gene #1086: 'BEND5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'BEND5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.647 (Fisher's exact test), Q value = 0.73

Table S10747.  Gene #1086: 'BEND5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
BEND5 MUTATED 3 1 2 0
BEND5 WILD-TYPE 124 50 69 69
'BEND5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 0.84

Table S10748.  Gene #1086: 'BEND5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
BEND5 MUTATED 1 2 2 0 0
BEND5 WILD-TYPE 83 83 83 69 47
'BEND5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0957 (Fisher's exact test), Q value = 0.21

Table S10749.  Gene #1086: 'BEND5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
BEND5 MUTATED 1 1 0 3
BEND5 WILD-TYPE 94 73 121 77
'BEND5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 0.44

Table S10750.  Gene #1086: 'BEND5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
BEND5 MUTATED 0 3 0 2 0 1
BEND5 WILD-TYPE 52 61 72 102 40 58
'BEND5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.72

Table S10751.  Gene #1086: 'BEND5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
BEND5 MUTATED 4 0 2
BEND5 WILD-TYPE 213 75 97
'FGF22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0614 (Fisher's exact test), Q value = 0.16

Table S10752.  Gene #1087: 'FGF22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FGF22 MUTATED 0 4 0 0
FGF22 WILD-TYPE 204 133 47 3
'FGF22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0691 (Fisher's exact test), Q value = 0.17

Table S10753.  Gene #1087: 'FGF22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FGF22 MUTATED 0 4 0 0 0
FGF22 WILD-TYPE 39 92 44 88 80
'FGF22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S10754.  Gene #1087: 'FGF22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FGF22 MUTATED 0 0 3 1 0
FGF22 WILD-TYPE 84 85 82 68 47
'FGF22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.28

Table S10755.  Gene #1087: 'FGF22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FGF22 MUTATED 2 0 0 2
FGF22 WILD-TYPE 93 74 121 78
'FGF22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0175 (Fisher's exact test), Q value = 0.078

Table S10756.  Gene #1087: 'FGF22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FGF22 MUTATED 3 0 1 0 0 0
FGF22 WILD-TYPE 49 64 71 104 40 59

Figure S3870.  Get High-res Image Gene #1087: 'FGF22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FGF22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.87

Table S10757.  Gene #1087: 'FGF22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FGF22 MUTATED 3 0 1
FGF22 WILD-TYPE 214 75 98
'FGF22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.58

Table S10758.  Gene #1087: 'FGF22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FGF22 MUTATED 2 0 1
FGF22 WILD-TYPE 119 108 71
'FGF22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00661 (Fisher's exact test), Q value = 0.045

Table S10759.  Gene #1087: 'FGF22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FGF22 MUTATED 0 0 0 0 3
FGF22 WILD-TYPE 88 66 45 55 44

Figure S3871.  Get High-res Image Gene #1087: 'FGF22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EIF2AK3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.404 (Fisher's exact test), Q value = 0.52

Table S10760.  Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EIF2AK3 MUTATED 8 10 1 0
EIF2AK3 WILD-TYPE 196 127 46 3
'EIF2AK3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.78

Table S10761.  Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EIF2AK3 MUTATED 1 6 3 4 2
EIF2AK3 WILD-TYPE 38 90 41 84 78
'EIF2AK3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.51

Table S10762.  Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EIF2AK3 MUTATED 1 5 5 1 3
EIF2AK3 WILD-TYPE 25 74 68 81 55
'EIF2AK3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00336 (Fisher's exact test), Q value = 0.031

Table S10763.  Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EIF2AK3 MUTATED 4 8 2 1
EIF2AK3 WILD-TYPE 123 43 69 68

Figure S3872.  Get High-res Image Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EIF2AK3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S10764.  Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EIF2AK3 MUTATED 1 0 10 1 4
EIF2AK3 WILD-TYPE 83 85 75 68 43

Figure S3873.  Get High-res Image Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EIF2AK3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0944 (Fisher's exact test), Q value = 0.21

Table S10765.  Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EIF2AK3 MUTATED 5 2 2 7
EIF2AK3 WILD-TYPE 90 72 119 73
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S10766.  Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EIF2AK3 MUTATED 3 7 4 3 0 2
EIF2AK3 WILD-TYPE 49 57 68 101 40 57
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 0.24

Table S10767.  Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EIF2AK3 MUTATED 15 1 3
EIF2AK3 WILD-TYPE 202 74 96
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0607 (Fisher's exact test), Q value = 0.16

Table S10768.  Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EIF2AK3 MUTATED 7 2 7
EIF2AK3 WILD-TYPE 114 106 65
'EIF2AK3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S10769.  Gene #1088: 'EIF2AK3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EIF2AK3 MUTATED 4 1 3 2 6
EIF2AK3 WILD-TYPE 84 65 42 53 41
'GALK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.28

Table S10770.  Gene #1089: 'GALK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GALK1 MUTATED 0 2 1 0
GALK1 WILD-TYPE 204 135 46 3
'GALK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S10771.  Gene #1089: 'GALK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GALK1 MUTATED 0 1 0 0 2
GALK1 WILD-TYPE 26 78 73 82 56
'GALK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0585 (Fisher's exact test), Q value = 0.16

Table S10772.  Gene #1089: 'GALK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GALK1 MUTATED 0 2 1 0
GALK1 WILD-TYPE 127 49 70 69
'GALK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.51

Table S10773.  Gene #1089: 'GALK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GALK1 MUTATED 0 2 2 0 0
GALK1 WILD-TYPE 84 83 83 69 47
'GALK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0226 (Fisher's exact test), Q value = 0.09

Table S10774.  Gene #1089: 'GALK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GALK1 MUTATED 0 1 0 3
GALK1 WILD-TYPE 95 73 121 77

Figure S3874.  Get High-res Image Gene #1089: 'GALK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GALK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.265 (Fisher's exact test), Q value = 0.4

Table S10775.  Gene #1089: 'GALK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GALK1 MUTATED 1 2 1 0 0 0
GALK1 WILD-TYPE 51 62 71 104 40 59
'GALK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S10776.  Gene #1089: 'GALK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GALK1 MUTATED 4 0 0
GALK1 WILD-TYPE 213 75 99
'ZNF334 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00448 (Fisher's exact test), Q value = 0.036

Table S10777.  Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF334 MUTATED 2 11 0 0
ZNF334 WILD-TYPE 202 126 47 3

Figure S3875.  Get High-res Image Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ZNF334 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 0.49

Table S10778.  Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF334 MUTATED 1 5 2 1 1
ZNF334 WILD-TYPE 38 91 42 87 79
'ZNF334 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S10779.  Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF334 MUTATED 0 6 3 1 2
ZNF334 WILD-TYPE 26 73 70 81 56
'ZNF334 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 3e-05 (Fisher's exact test), Q value = 0.002

Table S10780.  Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF334 MUTATED 0 8 3 1
ZNF334 WILD-TYPE 127 43 68 68

Figure S3876.  Get High-res Image Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0126 (Fisher's exact test), Q value = 0.065

Table S10781.  Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF334 MUTATED 1 2 8 0 1
ZNF334 WILD-TYPE 83 83 77 69 46

Figure S3877.  Get High-res Image Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ZNF334 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00533 (Fisher's exact test), Q value = 0.04

Table S10782.  Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF334 MUTATED 1 1 2 8
ZNF334 WILD-TYPE 94 73 119 72

Figure S3878.  Get High-res Image Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00391 (Fisher's exact test), Q value = 0.034

Table S10783.  Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF334 MUTATED 4 6 2 0 0 1
ZNF334 WILD-TYPE 48 58 70 104 40 58

Figure S3879.  Get High-res Image Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF334 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S10784.  Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF334 MUTATED 11 1 1
ZNF334 WILD-TYPE 206 74 98
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0652 (Fisher's exact test), Q value = 0.17

Table S10785.  Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF334 MUTATED 5 0 3
ZNF334 WILD-TYPE 116 108 69
'ZNF334 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0055 (Fisher's exact test), Q value = 0.041

Table S10786.  Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF334 MUTATED 1 0 3 0 4
ZNF334 WILD-TYPE 87 66 42 55 43

Figure S3880.  Get High-res Image Gene #1090: 'ZNF334 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HORMAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.28

Table S10787.  Gene #1091: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HORMAD1 MUTATED 1 5 1 0
HORMAD1 WILD-TYPE 203 132 46 3
'HORMAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.19

Table S10788.  Gene #1091: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HORMAD1 MUTATED 0 4 1 0 0
HORMAD1 WILD-TYPE 39 92 43 88 80
'HORMAD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 0.75

Table S10789.  Gene #1091: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HORMAD1 MUTATED 1 3 1 1 1
HORMAD1 WILD-TYPE 25 76 72 81 57
'HORMAD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.288 (Fisher's exact test), Q value = 0.42

Table S10790.  Gene #1091: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HORMAD1 MUTATED 2 3 1 1
HORMAD1 WILD-TYPE 125 48 70 68
'HORMAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S10791.  Gene #1091: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HORMAD1 MUTATED 1 0 4 1 0
HORMAD1 WILD-TYPE 83 85 81 68 47
'HORMAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 0.86

Table S10792.  Gene #1091: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HORMAD1 MUTATED 2 1 1 2
HORMAD1 WILD-TYPE 93 73 120 78
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S10793.  Gene #1091: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HORMAD1 MUTATED 1 2 2 0 1 1
HORMAD1 WILD-TYPE 51 62 70 104 39 58
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 0.92

Table S10794.  Gene #1091: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HORMAD1 MUTATED 5 1 1
HORMAD1 WILD-TYPE 212 74 98
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S10795.  Gene #1091: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HORMAD1 MUTATED 2 0 2
HORMAD1 WILD-TYPE 119 108 70
'HORMAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 0.64

Table S10796.  Gene #1091: 'HORMAD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HORMAD1 MUTATED 2 0 1 0 1
HORMAD1 WILD-TYPE 86 66 44 55 46
'CSNK1G1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S10797.  Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CSNK1G1 MUTATED 1 5 0 0
CSNK1G1 WILD-TYPE 203 132 47 3
'CSNK1G1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 0.086

Table S10798.  Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CSNK1G1 MUTATED 0 5 0 0 0
CSNK1G1 WILD-TYPE 39 91 44 88 80

Figure S3881.  Get High-res Image Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CSNK1G1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 0.53

Table S10799.  Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CSNK1G1 MUTATED 0 1 2 0 2
CSNK1G1 WILD-TYPE 26 78 71 82 56
'CSNK1G1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0506 (Fisher's exact test), Q value = 0.14

Table S10800.  Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CSNK1G1 MUTATED 2 3 0 0
CSNK1G1 WILD-TYPE 125 48 71 69
'CSNK1G1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0738 (Fisher's exact test), Q value = 0.18

Table S10801.  Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CSNK1G1 MUTATED 0 0 4 2 1
CSNK1G1 WILD-TYPE 84 85 81 67 46
'CSNK1G1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00516 (Fisher's exact test), Q value = 0.039

Table S10802.  Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CSNK1G1 MUTATED 2 0 0 5
CSNK1G1 WILD-TYPE 93 74 121 75

Figure S3882.  Get High-res Image Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0106 (Fisher's exact test), Q value = 0.059

Table S10803.  Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CSNK1G1 MUTATED 4 2 1 0 0 0
CSNK1G1 WILD-TYPE 48 62 71 104 40 59

Figure S3883.  Get High-res Image Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S10804.  Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CSNK1G1 MUTATED 6 0 1
CSNK1G1 WILD-TYPE 211 75 98
'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.1

Table S10805.  Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CSNK1G1 MUTATED 5 0 0
CSNK1G1 WILD-TYPE 116 108 72

Figure S3884.  Get High-res Image Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CSNK1G1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1e-04 (Fisher's exact test), Q value = 0.0039

Table S10806.  Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CSNK1G1 MUTATED 0 0 0 0 5
CSNK1G1 WILD-TYPE 88 66 45 55 42

Figure S3885.  Get High-res Image Gene #1092: 'CSNK1G1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HIST1H1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0873 (Fisher's exact test), Q value = 0.2

Table S10807.  Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HIST1H1B MUTATED 3 8 0 0
HIST1H1B WILD-TYPE 201 129 47 3
'HIST1H1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0456 (Fisher's exact test), Q value = 0.14

Table S10808.  Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HIST1H1B MUTATED 0 7 0 1 1
HIST1H1B WILD-TYPE 39 89 44 87 79

Figure S3886.  Get High-res Image Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIST1H1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.16

Table S10809.  Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HIST1H1B MUTATED 2 3 5 0 1
HIST1H1B WILD-TYPE 24 76 68 82 57
'HIST1H1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0237 (Fisher's exact test), Q value = 0.093

Table S10810.  Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HIST1H1B MUTATED 3 5 3 0
HIST1H1B WILD-TYPE 124 46 68 69

Figure S3887.  Get High-res Image Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 0.59

Table S10811.  Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HIST1H1B MUTATED 1 2 3 1 3
HIST1H1B WILD-TYPE 83 83 82 68 44
'HIST1H1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S10812.  Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HIST1H1B MUTATED 2 1 2 5
HIST1H1B WILD-TYPE 93 73 119 75
'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 0.57

Table S10813.  Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HIST1H1B MUTATED 2 4 2 1 1 1
HIST1H1B WILD-TYPE 50 60 70 103 39 58
'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S10814.  Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HIST1H1B MUTATED 9 0 2
HIST1H1B WILD-TYPE 208 75 97
'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S10815.  Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HIST1H1B MUTATED 4 1 4
HIST1H1B WILD-TYPE 117 107 68
'HIST1H1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S10816.  Gene #1093: 'HIST1H1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HIST1H1B MUTATED 4 0 2 1 2
HIST1H1B WILD-TYPE 84 66 43 54 45
'KIF20B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.09

Table S10817.  Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIF20B MUTATED 3 10 0 0
KIF20B WILD-TYPE 201 127 47 3

Figure S3888.  Get High-res Image Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIF20B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0962 (Fisher's exact test), Q value = 0.21

Table S10818.  Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIF20B MUTATED 2 5 2 1 0
KIF20B WILD-TYPE 37 91 42 87 80
'KIF20B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0641 (Fisher's exact test), Q value = 0.17

Table S10819.  Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIF20B MUTATED 0 6 4 0 2
KIF20B WILD-TYPE 26 73 69 82 56
'KIF20B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00016 (Fisher's exact test), Q value = 0.0052

Table S10820.  Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIF20B MUTATED 1 7 4 0
KIF20B WILD-TYPE 126 44 67 69

Figure S3889.  Get High-res Image Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIF20B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0288 (Fisher's exact test), Q value = 0.1

Table S10821.  Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIF20B MUTATED 2 0 5 1 4
KIF20B WILD-TYPE 82 85 80 68 43

Figure S3890.  Get High-res Image Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIF20B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S10822.  Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIF20B MUTATED 4 1 2 5
KIF20B WILD-TYPE 91 73 119 75
'KIF20B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S10823.  Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIF20B MUTATED 4 4 2 1 1 1
KIF20B WILD-TYPE 48 60 70 103 39 58
'KIF20B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S10824.  Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIF20B MUTATED 11 1 1
KIF20B WILD-TYPE 206 74 98
'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 0.12

Table S10825.  Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIF20B MUTATED 6 0 3
KIF20B WILD-TYPE 115 108 69

Figure S3891.  Get High-res Image Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'KIF20B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S10826.  Gene #1094: 'KIF20B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIF20B MUTATED 5 1 0 1 2
KIF20B WILD-TYPE 83 65 45 54 45
'SASH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00491 (Fisher's exact test), Q value = 0.038

Table S10827.  Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SASH3 MUTATED 0 7 1 0
SASH3 WILD-TYPE 204 130 46 3

Figure S3892.  Get High-res Image Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SASH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0156 (Fisher's exact test), Q value = 0.073

Table S10828.  Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SASH3 MUTATED 2 5 0 0 0
SASH3 WILD-TYPE 37 91 44 88 80

Figure S3893.  Get High-res Image Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SASH3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 0.38

Table S10829.  Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SASH3 MUTATED 1 1 3 0 2
SASH3 WILD-TYPE 25 78 70 82 56
'SASH3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00296 (Fisher's exact test), Q value = 0.029

Table S10830.  Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SASH3 MUTATED 2 5 0 0
SASH3 WILD-TYPE 125 46 71 69

Figure S3894.  Get High-res Image Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SASH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0409 (Fisher's exact test), Q value = 0.13

Table S10831.  Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SASH3 MUTATED 0 0 2 4 1
SASH3 WILD-TYPE 84 85 83 65 46

Figure S3895.  Get High-res Image Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SASH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.062

Table S10832.  Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SASH3 MUTATED 5 0 0 2
SASH3 WILD-TYPE 90 74 121 78

Figure S3896.  Get High-res Image Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SASH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0192 (Fisher's exact test), Q value = 0.082

Table S10833.  Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SASH3 MUTATED 4 2 1 0 1 0
SASH3 WILD-TYPE 48 62 71 104 39 59

Figure S3897.  Get High-res Image Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SASH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0318 (Fisher's exact test), Q value = 0.11

Table S10834.  Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SASH3 MUTATED 8 0 0
SASH3 WILD-TYPE 209 75 99

Figure S3898.  Get High-res Image Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'SASH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0899 (Fisher's exact test), Q value = 0.2

Table S10835.  Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SASH3 MUTATED 5 0 2
SASH3 WILD-TYPE 116 108 70
'SASH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 0.11

Table S10836.  Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SASH3 MUTATED 2 0 1 0 4
SASH3 WILD-TYPE 86 66 44 55 43

Figure S3899.  Get High-res Image Gene #1095: 'SASH3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TCERG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00949 (Fisher's exact test), Q value = 0.055

Table S10837.  Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TCERG1 MUTATED 2 10 0 0
TCERG1 WILD-TYPE 202 127 47 3

Figure S3900.  Get High-res Image Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TCERG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S10838.  Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TCERG1 MUTATED 1 6 1 0 2
TCERG1 WILD-TYPE 38 90 43 88 78
'TCERG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S10839.  Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TCERG1 MUTATED 2 2 3 1 3
TCERG1 WILD-TYPE 24 77 70 81 55
'TCERG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0138 (Fisher's exact test), Q value = 0.068

Table S10840.  Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TCERG1 MUTATED 2 6 1 2
TCERG1 WILD-TYPE 125 45 70 67

Figure S3901.  Get High-res Image Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TCERG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0951 (Fisher's exact test), Q value = 0.21

Table S10841.  Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TCERG1 MUTATED 1 1 7 2 1
TCERG1 WILD-TYPE 83 84 78 67 46
'TCERG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 0.87

Table S10842.  Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TCERG1 MUTATED 3 2 3 4
TCERG1 WILD-TYPE 92 72 118 76
'TCERG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S10843.  Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TCERG1 MUTATED 3 5 1 2 0 1
TCERG1 WILD-TYPE 49 59 71 102 40 58
'TCERG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0376 (Fisher's exact test), Q value = 0.12

Table S10844.  Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TCERG1 MUTATED 11 0 1
TCERG1 WILD-TYPE 206 75 98

Figure S3902.  Get High-res Image Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TCERG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S10845.  Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TCERG1 MUTATED 5 1 4
TCERG1 WILD-TYPE 116 107 68
'TCERG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0562 (Fisher's exact test), Q value = 0.15

Table S10846.  Gene #1096: 'TCERG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TCERG1 MUTATED 4 0 3 0 3
TCERG1 WILD-TYPE 84 66 42 55 44
'FBXL22 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0706 (Fisher's exact test), Q value = 0.18

Table S10847.  Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FBXL22 MUTATED 0 4 1 0
FBXL22 WILD-TYPE 204 133 46 3
'FBXL22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 0.27

Table S10848.  Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FBXL22 MUTATED 1 3 0 0 0
FBXL22 WILD-TYPE 38 93 44 88 80
'FBXL22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 0.52

Table S10849.  Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FBXL22 MUTATED 0 2 2 0 0
FBXL22 WILD-TYPE 26 77 71 82 58
'FBXL22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0471 (Fisher's exact test), Q value = 0.14

Table S10850.  Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FBXL22 MUTATED 0 2 2 0
FBXL22 WILD-TYPE 127 49 69 69

Figure S3903.  Get High-res Image Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FBXL22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S10851.  Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FBXL22 MUTATED 0 1 2 1 0
FBXL22 WILD-TYPE 84 84 83 68 47
'FBXL22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S10852.  Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FBXL22 MUTATED 1 2 0 1
FBXL22 WILD-TYPE 94 72 121 79
'FBXL22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 0.53

Table S10853.  Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FBXL22 MUTATED 1 2 0 1 1 0
FBXL22 WILD-TYPE 51 62 72 103 39 59
'FBXL22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.6

Table S10854.  Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FBXL22 MUTATED 4 1 0
FBXL22 WILD-TYPE 213 74 99
'FBXL22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S10855.  Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FBXL22 MUTATED 2 1 1
FBXL22 WILD-TYPE 119 107 71
'FBXL22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 0.28

Table S10856.  Gene #1097: 'FBXL22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FBXL22 MUTATED 0 1 1 0 2
FBXL22 WILD-TYPE 88 65 44 55 45
'PARP15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.197 (Fisher's exact test), Q value = 0.33

Table S10857.  Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PARP15 MUTATED 1 4 0 0
PARP15 WILD-TYPE 203 133 47 3
'PARP15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 0.33

Table S10858.  Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PARP15 MUTATED 1 1 2 0 1
PARP15 WILD-TYPE 38 95 42 88 79
'PARP15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.401 (Fisher's exact test), Q value = 0.52

Table S10859.  Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PARP15 MUTATED 1 2 1 0 1
PARP15 WILD-TYPE 25 77 72 82 57
'PARP15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S10860.  Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PARP15 MUTATED 1 2 2 0
PARP15 WILD-TYPE 126 49 69 69
'PARP15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0163 (Fisher's exact test), Q value = 0.074

Table S10861.  Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PARP15 MUTATED 0 0 4 0 0
PARP15 WILD-TYPE 84 85 81 69 47

Figure S3904.  Get High-res Image Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PARP15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0856 (Fisher's exact test), Q value = 0.2

Table S10862.  Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PARP15 MUTATED 0 0 1 3
PARP15 WILD-TYPE 95 74 120 77
'PARP15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 0.37

Table S10863.  Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PARP15 MUTATED 2 2 0 1 0 0
PARP15 WILD-TYPE 50 62 72 103 40 59
'PARP15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 0.6

Table S10864.  Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PARP15 MUTATED 4 1 0
PARP15 WILD-TYPE 213 74 99
'PARP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0599 (Fisher's exact test), Q value = 0.16

Table S10865.  Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PARP15 MUTATED 1 0 3
PARP15 WILD-TYPE 120 108 69
'PARP15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.403 (Fisher's exact test), Q value = 0.52

Table S10866.  Gene #1098: 'PARP15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PARP15 MUTATED 1 1 2 0 0
PARP15 WILD-TYPE 87 65 43 55 47
'NCAN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00577 (Fisher's exact test), Q value = 0.042

Table S10867.  Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NCAN MUTATED 5 16 3 0
NCAN WILD-TYPE 199 121 44 3

Figure S3905.  Get High-res Image Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NCAN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00034 (Fisher's exact test), Q value = 0.0082

Table S10868.  Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NCAN MUTATED 0 12 3 0 2
NCAN WILD-TYPE 39 84 41 88 78

Figure S3906.  Get High-res Image Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NCAN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 0.61

Table S10869.  Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NCAN MUTATED 2 8 4 3 5
NCAN WILD-TYPE 24 71 69 79 53
'NCAN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00935 (Fisher's exact test), Q value = 0.055

Table S10870.  Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NCAN MUTATED 5 9 6 2
NCAN WILD-TYPE 122 42 65 67

Figure S3907.  Get High-res Image Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NCAN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0718 (Fisher's exact test), Q value = 0.18

Table S10871.  Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NCAN MUTATED 3 6 10 1 4
NCAN WILD-TYPE 81 79 75 68 43
'NCAN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S10872.  Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NCAN MUTATED 7 4 4 9
NCAN WILD-TYPE 88 70 117 71
'NCAN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S10873.  Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NCAN MUTATED 2 8 6 5 1 3
NCAN WILD-TYPE 50 56 66 99 39 56
'NCAN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 0.31

Table S10874.  Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NCAN MUTATED 18 4 3
NCAN WILD-TYPE 199 71 96
'NCAN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.28

Table S10875.  Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NCAN MUTATED 4 5 7
NCAN WILD-TYPE 117 103 65
'NCAN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S10876.  Gene #1099: 'NCAN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NCAN MUTATED 3 2 3 2 6
NCAN WILD-TYPE 85 64 42 53 41
'SLC30A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.09

Table S10877.  Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC30A3 MUTATED 1 5 3 0
SLC30A3 WILD-TYPE 203 132 44 3

Figure S3908.  Get High-res Image Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC30A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 0.42

Table S10878.  Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC30A3 MUTATED 2 2 1 1 0
SLC30A3 WILD-TYPE 37 94 43 87 80
'SLC30A3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 0.11

Table S10879.  Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC30A3 MUTATED 1 2 1 0 5
SLC30A3 WILD-TYPE 25 77 72 82 53

Figure S3909.  Get High-res Image Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SLC30A3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S10880.  Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC30A3 MUTATED 1 7 1 0
SLC30A3 WILD-TYPE 126 44 70 69

Figure S3910.  Get High-res Image Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC30A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 0.68

Table S10881.  Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC30A3 MUTATED 1 1 4 1 1
SLC30A3 WILD-TYPE 83 84 81 68 46
'SLC30A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 0.13

Table S10882.  Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC30A3 MUTATED 2 0 1 5
SLC30A3 WILD-TYPE 93 74 120 75

Figure S3911.  Get High-res Image Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SLC30A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S10883.  Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC30A3 MUTATED 2 2 3 0 1 1
SLC30A3 WILD-TYPE 50 62 69 104 39 58
'SLC30A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S10884.  Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC30A3 MUTATED 6 0 3
SLC30A3 WILD-TYPE 211 75 96
'SLC30A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 0.74

Table S10885.  Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC30A3 MUTATED 3 1 2
SLC30A3 WILD-TYPE 118 107 70
'SLC30A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0122 (Fisher's exact test), Q value = 0.063

Table S10886.  Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC30A3 MUTATED 2 0 0 0 4
SLC30A3 WILD-TYPE 86 66 45 55 43

Figure S3912.  Get High-res Image Gene #1100: 'SLC30A3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LRP1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S10887.  Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LRP1B MUTATED 46 44 12 1
LRP1B WILD-TYPE 158 93 35 2
'LRP1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S10888.  Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LRP1B MUTATED 3 50 8 19 12
LRP1B WILD-TYPE 36 46 36 69 68

Figure S3913.  Get High-res Image Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'LRP1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.216 (Fisher's exact test), Q value = 0.35

Table S10889.  Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LRP1B MUTATED 9 25 23 15 17
LRP1B WILD-TYPE 17 54 50 67 41
'LRP1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0017 (Fisher's exact test), Q value = 0.021

Table S10890.  Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LRP1B MUTATED 31 26 15 17
LRP1B WILD-TYPE 96 25 56 52

Figure S3914.  Get High-res Image Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRP1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00148 (Fisher's exact test), Q value = 0.02

Table S10891.  Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LRP1B MUTATED 17 16 36 15 17
LRP1B WILD-TYPE 67 69 49 54 30

Figure S3915.  Get High-res Image Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRP1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00029 (Fisher's exact test), Q value = 0.0076

Table S10892.  Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LRP1B MUTATED 21 15 27 38
LRP1B WILD-TYPE 74 59 94 42

Figure S3916.  Get High-res Image Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRP1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.16 (Fisher's exact test), Q value = 0.29

Table S10893.  Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LRP1B MUTATED 21 17 20 23 11 11
LRP1B WILD-TYPE 31 47 52 81 29 48
'LRP1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S10894.  Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LRP1B MUTATED 66 16 21
LRP1B WILD-TYPE 151 59 78
'LRP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.752 (Fisher's exact test), Q value = 0.82

Table S10895.  Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LRP1B MUTATED 35 27 21
LRP1B WILD-TYPE 86 81 51
'LRP1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0628 (Fisher's exact test), Q value = 0.16

Table S10896.  Gene #1101: 'LRP1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LRP1B MUTATED 31 11 11 13 17
LRP1B WILD-TYPE 57 55 34 42 30
'GNAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0196 (Fisher's exact test), Q value = 0.083

Table S10897.  Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GNAS MUTATED 10 20 3 0
GNAS WILD-TYPE 194 117 44 3

Figure S3917.  Get High-res Image Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GNAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S10898.  Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GNAS MUTATED 2 17 3 4 4
GNAS WILD-TYPE 37 79 41 84 76

Figure S3918.  Get High-res Image Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GNAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S10899.  Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GNAS MUTATED 4 5 9 3 6
GNAS WILD-TYPE 22 74 64 79 52
'GNAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0302 (Fisher's exact test), Q value = 0.11

Table S10900.  Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GNAS MUTATED 12 8 6 1
GNAS WILD-TYPE 115 43 65 68

Figure S3919.  Get High-res Image Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.075 (Fisher's exact test), Q value = 0.18

Table S10901.  Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GNAS MUTATED 5 3 13 6 5
GNAS WILD-TYPE 79 82 72 63 42
'GNAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00106 (Fisher's exact test), Q value = 0.016

Table S10902.  Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GNAS MUTATED 8 3 5 16
GNAS WILD-TYPE 87 71 116 64

Figure S3920.  Get High-res Image Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00143 (Fisher's exact test), Q value = 0.019

Table S10903.  Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GNAS MUTATED 12 6 7 2 3 4
GNAS WILD-TYPE 40 58 65 102 37 55

Figure S3921.  Get High-res Image Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GNAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0039 (Fisher's exact test), Q value = 0.034

Table S10904.  Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GNAS MUTATED 28 2 4
GNAS WILD-TYPE 189 73 95

Figure S3922.  Get High-res Image Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0442 (Fisher's exact test), Q value = 0.13

Table S10905.  Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GNAS MUTATED 15 4 8
GNAS WILD-TYPE 106 104 64

Figure S3923.  Get High-res Image Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'GNAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S10906.  Gene #1102: 'GNAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GNAS MUTATED 9 3 4 3 8
GNAS WILD-TYPE 79 63 41 52 39
'FER MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0806 (Fisher's exact test), Q value = 0.19

Table S10907.  Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FER MUTATED 4 9 0 0
FER WILD-TYPE 200 128 47 3
'FER MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.46

Table S10908.  Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FER MUTATED 2 6 0 2 2
FER WILD-TYPE 37 90 44 86 78
'FER MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0448 (Fisher's exact test), Q value = 0.13

Table S10909.  Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FER MUTATED 3 3 4 0 2
FER WILD-TYPE 23 76 69 82 56

Figure S3924.  Get High-res Image Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'FER MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.094

Table S10910.  Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FER MUTATED 4 6 1 1
FER WILD-TYPE 123 45 70 68

Figure S3925.  Get High-res Image Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FER MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S10911.  Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FER MUTATED 2 1 7 2 1
FER WILD-TYPE 82 84 78 67 46
'FER MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 0.71

Table S10912.  Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FER MUTATED 4 1 4 4
FER WILD-TYPE 91 73 117 76
'FER MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.31

Table S10913.  Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FER MUTATED 4 4 2 1 1 1
FER WILD-TYPE 48 60 70 103 39 58
'FER MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S10914.  Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FER MUTATED 10 2 1
FER WILD-TYPE 207 73 98
'FER MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S10915.  Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FER MUTATED 6 1 3
FER WILD-TYPE 115 107 69
'FER MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S10916.  Gene #1103: 'FER MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FER MUTATED 4 1 3 1 1
FER WILD-TYPE 84 65 42 54 46
'GPATCH2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 0.21

Table S10917.  Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPATCH2 MUTATED 2 7 0 0
GPATCH2 WILD-TYPE 202 130 47 3
'GPATCH2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S10918.  Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPATCH2 MUTATED 0 3 1 2 1
GPATCH2 WILD-TYPE 39 93 43 86 79
'GPATCH2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0694 (Fisher's exact test), Q value = 0.17

Table S10919.  Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPATCH2 MUTATED 1 3 4 0 0
GPATCH2 WILD-TYPE 25 76 69 82 58
'GPATCH2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00316 (Fisher's exact test), Q value = 0.03

Table S10920.  Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPATCH2 MUTATED 1 5 2 0
GPATCH2 WILD-TYPE 126 46 69 69

Figure S3926.  Get High-res Image Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GPATCH2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 0.38

Table S10921.  Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPATCH2 MUTATED 0 2 4 1 2
GPATCH2 WILD-TYPE 84 83 81 68 45
'GPATCH2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.702 (Fisher's exact test), Q value = 0.78

Table S10922.  Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPATCH2 MUTATED 3 1 2 3
GPATCH2 WILD-TYPE 92 73 119 77
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0553 (Fisher's exact test), Q value = 0.15

Table S10923.  Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPATCH2 MUTATED 1 5 0 1 1 1
GPATCH2 WILD-TYPE 51 59 72 103 39 58
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.904 (Fisher's exact test), Q value = 0.94

Table S10924.  Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPATCH2 MUTATED 6 1 2
GPATCH2 WILD-TYPE 211 74 97
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S10925.  Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPATCH2 MUTATED 2 1 4
GPATCH2 WILD-TYPE 119 107 68
'GPATCH2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 0.18

Table S10926.  Gene #1104: 'GPATCH2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPATCH2 MUTATED 0 1 3 1 2
GPATCH2 WILD-TYPE 88 65 42 54 45
'GFOD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0122 (Fisher's exact test), Q value = 0.063

Table S10927.  Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GFOD1 MUTATED 2 10 1 0
GFOD1 WILD-TYPE 202 127 46 3

Figure S3927.  Get High-res Image Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GFOD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S10928.  Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GFOD1 MUTATED 1 4 2 0 1
GFOD1 WILD-TYPE 38 92 42 88 79
'GFOD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0297 (Fisher's exact test), Q value = 0.11

Table S10929.  Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GFOD1 MUTATED 1 6 0 1 4
GFOD1 WILD-TYPE 25 73 73 81 54

Figure S3928.  Get High-res Image Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GFOD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00616 (Fisher's exact test), Q value = 0.043

Table S10930.  Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GFOD1 MUTATED 2 5 5 0
GFOD1 WILD-TYPE 125 46 66 69

Figure S3929.  Get High-res Image Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GFOD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.66

Table S10931.  Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GFOD1 MUTATED 1 3 5 3 1
GFOD1 WILD-TYPE 83 82 80 66 46
'GFOD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.328 (Fisher's exact test), Q value = 0.46

Table S10932.  Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GFOD1 MUTATED 4 2 2 5
GFOD1 WILD-TYPE 91 72 119 75
'GFOD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0075

Table S10933.  Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GFOD1 MUTATED 1 9 2 1 0 0
GFOD1 WILD-TYPE 51 55 70 103 40 59

Figure S3930.  Get High-res Image Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'GFOD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S10934.  Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GFOD1 MUTATED 10 1 2
GFOD1 WILD-TYPE 207 74 97
'GFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S10935.  Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GFOD1 MUTATED 3 1 4
GFOD1 WILD-TYPE 118 107 68
'GFOD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.14

Table S10936.  Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GFOD1 MUTATED 1 1 4 0 2
GFOD1 WILD-TYPE 87 65 41 55 45

Figure S3931.  Get High-res Image Gene #1105: 'GFOD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C3ORF33 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S10937.  Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C3ORF33 MUTATED 1 3 2 0
C3ORF33 WILD-TYPE 203 134 45 3
'C3ORF33 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 0.25

Table S10938.  Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C3ORF33 MUTATED 0 5 1 1 0
C3ORF33 WILD-TYPE 39 91 43 87 80
'C3ORF33 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 0.51

Table S10939.  Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
C3ORF33 MUTATED 0 3 1 0 1
C3ORF33 WILD-TYPE 26 76 72 82 57
'C3ORF33 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.022 (Fisher's exact test), Q value = 0.089

Table S10940.  Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
C3ORF33 MUTATED 0 2 3 0
C3ORF33 WILD-TYPE 127 49 68 69

Figure S3932.  Get High-res Image Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'C3ORF33 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.14

Table S10941.  Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C3ORF33 MUTATED 0 1 4 0 2
C3ORF33 WILD-TYPE 84 84 81 69 45

Figure S3933.  Get High-res Image Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'C3ORF33 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0113 (Fisher's exact test), Q value = 0.061

Table S10942.  Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C3ORF33 MUTATED 0 0 2 5
C3ORF33 WILD-TYPE 95 74 119 75

Figure S3934.  Get High-res Image Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C3ORF33 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S10943.  Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C3ORF33 MUTATED 2 2 1 1 0 1
C3ORF33 WILD-TYPE 50 62 71 103 40 58
'C3ORF33 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.384 (Fisher's exact test), Q value = 0.51

Table S10944.  Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C3ORF33 MUTATED 6 0 1
C3ORF33 WILD-TYPE 211 75 98
'C3ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 0.55

Table S10945.  Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C3ORF33 MUTATED 3 1 3
C3ORF33 WILD-TYPE 118 107 69
'C3ORF33 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.406 (Fisher's exact test), Q value = 0.52

Table S10946.  Gene #1106: 'C3ORF33 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C3ORF33 MUTATED 2 0 2 1 2
C3ORF33 WILD-TYPE 86 66 43 54 45
'MYCL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.768 (Fisher's exact test), Q value = 0.83

Table S10947.  Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MYCL1 MUTATED 3 3 1 0
MYCL1 WILD-TYPE 201 134 46 3
'MYCL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.062

Table S10948.  Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MYCL1 MUTATED 3 3 0 0 0
MYCL1 WILD-TYPE 36 93 44 88 80

Figure S3935.  Get High-res Image Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MYCL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S10949.  Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MYCL1 MUTATED 0 1 4 1 0
MYCL1 WILD-TYPE 26 78 69 81 58
'MYCL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.073

Table S10950.  Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MYCL1 MUTATED 1 4 1 0
MYCL1 WILD-TYPE 126 47 70 69

Figure S3936.  Get High-res Image Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MYCL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S10951.  Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MYCL1 MUTATED 0 1 2 3 1
MYCL1 WILD-TYPE 84 84 83 66 46
'MYCL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0949 (Fisher's exact test), Q value = 0.21

Table S10952.  Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MYCL1 MUTATED 4 1 0 2
MYCL1 WILD-TYPE 91 73 121 78
'MYCL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0228 (Fisher's exact test), Q value = 0.091

Table S10953.  Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MYCL1 MUTATED 1 4 1 0 2 0
MYCL1 WILD-TYPE 51 60 71 104 38 59

Figure S3937.  Get High-res Image Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MYCL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0328 (Fisher's exact test), Q value = 0.11

Table S10954.  Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MYCL1 MUTATED 8 0 0
MYCL1 WILD-TYPE 209 75 99

Figure S3938.  Get High-res Image Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MYCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 0.35

Table S10955.  Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MYCL1 MUTATED 3 0 2
MYCL1 WILD-TYPE 118 108 70
'MYCL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S10956.  Gene #1107: 'MYCL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MYCL1 MUTATED 1 0 2 0 2
MYCL1 WILD-TYPE 87 66 43 55 45
'SERPING1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 0.71

Table S10957.  Gene #1108: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SERPING1 MUTATED 3 4 1 0
SERPING1 WILD-TYPE 201 133 46 3
'SERPING1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.635 (Fisher's exact test), Q value = 0.72

Table S10958.  Gene #1108: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SERPING1 MUTATED 1 2 2 1 1
SERPING1 WILD-TYPE 38 94 42 87 79
'SERPING1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 0.94

Table S10959.  Gene #1108: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SERPING1 MUTATED 1 2 1 2 2
SERPING1 WILD-TYPE 25 77 72 80 56
'SERPING1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 0.63

Table S10960.  Gene #1108: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SERPING1 MUTATED 2 2 3 1
SERPING1 WILD-TYPE 125 49 68 68
'SERPING1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 0.66

Table S10961.  Gene #1108: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SERPING1 MUTATED 1 2 4 1 0
SERPING1 WILD-TYPE 83 83 81 68 47
'SERPING1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.537 (Fisher's exact test), Q value = 0.64

Table S10962.  Gene #1108: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SERPING1 MUTATED 2 2 1 3
SERPING1 WILD-TYPE 93 72 120 77
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.47

Table S10963.  Gene #1108: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SERPING1 MUTATED 0 0 3 4 0 1
SERPING1 WILD-TYPE 52 64 69 100 40 58
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S10964.  Gene #1108: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SERPING1 MUTATED 5 1 2
SERPING1 WILD-TYPE 212 74 97
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.65

Table S10965.  Gene #1108: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SERPING1 MUTATED 1 3 1
SERPING1 WILD-TYPE 120 105 71
'SERPING1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.966 (Fisher's exact test), Q value = 0.99

Table S10966.  Gene #1108: 'SERPING1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SERPING1 MUTATED 2 1 0 1 1
SERPING1 WILD-TYPE 86 65 45 54 46
'TNFRSF13B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 0.28

Table S10967.  Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TNFRSF13B MUTATED 1 5 1 0
TNFRSF13B WILD-TYPE 203 132 46 3
'TNFRSF13B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.902 (Fisher's exact test), Q value = 0.94

Table S10968.  Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TNFRSF13B MUTATED 0 3 1 2 1
TNFRSF13B WILD-TYPE 39 93 43 86 79
'TNFRSF13B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.849 (Fisher's exact test), Q value = 0.89

Table S10969.  Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TNFRSF13B MUTATED 0 2 1 2 0
TNFRSF13B WILD-TYPE 26 77 72 80 58
'TNFRSF13B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 0.49

Table S10970.  Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TNFRSF13B MUTATED 2 2 1 0
TNFRSF13B WILD-TYPE 125 49 70 69
'TNFRSF13B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0499 (Fisher's exact test), Q value = 0.14

Table S10971.  Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TNFRSF13B MUTATED 1 0 4 0 2
TNFRSF13B WILD-TYPE 83 85 81 69 45

Figure S3939.  Get High-res Image Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TNFRSF13B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 0.28

Table S10972.  Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TNFRSF13B MUTATED 1 0 2 4
TNFRSF13B WILD-TYPE 94 74 119 76
'TNFRSF13B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S10973.  Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TNFRSF13B MUTATED 3 1 1 0 1 1
TNFRSF13B WILD-TYPE 49 63 71 104 39 58
'TNFRSF13B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S10974.  Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TNFRSF13B MUTATED 6 0 1
TNFRSF13B WILD-TYPE 211 75 98
'TNFRSF13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.44

Table S10975.  Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TNFRSF13B MUTATED 5 1 1
TNFRSF13B WILD-TYPE 116 107 71
'TNFRSF13B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0886 (Fisher's exact test), Q value = 0.2

Table S10976.  Gene #1109: 'TNFRSF13B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TNFRSF13B MUTATED 2 0 2 0 3
TNFRSF13B WILD-TYPE 86 66 43 55 44
'ABCC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00799 (Fisher's exact test), Q value = 0.05

Table S10977.  Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ABCC1 MUTATED 2 11 1 0
ABCC1 WILD-TYPE 202 126 46 3

Figure S3940.  Get High-res Image Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ABCC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00109 (Fisher's exact test), Q value = 0.016

Table S10978.  Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ABCC1 MUTATED 0 10 1 1 0
ABCC1 WILD-TYPE 39 86 43 87 80

Figure S3941.  Get High-res Image Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ABCC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 0.47

Table S10979.  Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ABCC1 MUTATED 0 4 5 1 3
ABCC1 WILD-TYPE 26 75 68 81 55
'ABCC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 6e-05 (Fisher's exact test), Q value = 0.0029

Table S10980.  Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ABCC1 MUTATED 3 9 1 0
ABCC1 WILD-TYPE 124 42 70 69

Figure S3942.  Get High-res Image Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ABCC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0441 (Fisher's exact test), Q value = 0.13

Table S10981.  Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ABCC1 MUTATED 1 3 7 0 2
ABCC1 WILD-TYPE 83 82 78 69 45

Figure S3943.  Get High-res Image Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'ABCC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0029 (Fisher's exact test), Q value = 0.029

Table S10982.  Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ABCC1 MUTATED 1 3 1 8
ABCC1 WILD-TYPE 94 71 120 72

Figure S3944.  Get High-res Image Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ABCC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.48

Table S10983.  Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ABCC1 MUTATED 3 3 3 5 0 0
ABCC1 WILD-TYPE 49 61 69 99 40 59
'ABCC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S10984.  Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ABCC1 MUTATED 12 2 0
ABCC1 WILD-TYPE 205 73 99

Figure S3945.  Get High-res Image Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ABCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 0.9

Table S10985.  Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ABCC1 MUTATED 5 3 3
ABCC1 WILD-TYPE 116 105 69
'ABCC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S10986.  Gene #1110: 'ABCC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ABCC1 MUTATED 3 3 1 0 4
ABCC1 WILD-TYPE 85 63 44 55 43
'CD1E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 0.95

Table S10987.  Gene #1111: 'CD1E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CD1E MUTATED 7 3 1 0
CD1E WILD-TYPE 197 134 46 3
'CD1E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 0.57

Table S10988.  Gene #1111: 'CD1E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CD1E MUTATED 0 5 0 2 2
CD1E WILD-TYPE 39 91 44 86 78
'CD1E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 0.57

Table S10989.  Gene #1111: 'CD1E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CD1E MUTATED 2 2 3 1 2
CD1E WILD-TYPE 24 77 70 81 56
'CD1E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 0.87

Table S10990.  Gene #1111: 'CD1E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CD1E MUTATED 5 2 1 2
CD1E WILD-TYPE 122 49 70 67
'CD1E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 0.93

Table S10991.  Gene #1111: 'CD1E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CD1E MUTATED 3 1 3 2 1
CD1E WILD-TYPE 81 84 82 67 46
'CD1E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S10992.  Gene #1111: 'CD1E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CD1E MUTATED 2 2 4 2
CD1E WILD-TYPE 93 72 117 78
'CD1E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S10993.  Gene #1111: 'CD1E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CD1E MUTATED 1 1 2 1 2 4
CD1E WILD-TYPE 51 63 70 103 38 55
'CD1E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.539 (Fisher's exact test), Q value = 0.64

Table S10994.  Gene #1111: 'CD1E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CD1E MUTATED 6 1 4
CD1E WILD-TYPE 211 74 95
'CD1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 0.87

Table S10995.  Gene #1111: 'CD1E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CD1E MUTATED 4 3 1
CD1E WILD-TYPE 117 105 71
'CD1E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S10996.  Gene #1111: 'CD1E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CD1E MUTATED 2 2 0 2 2
CD1E WILD-TYPE 86 64 45 53 45
'ATG9A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0527 (Fisher's exact test), Q value = 0.15

Table S10997.  Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ATG9A MUTATED 2 8 1 0
ATG9A WILD-TYPE 202 129 46 3
'ATG9A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0673 (Fisher's exact test), Q value = 0.17

Table S10998.  Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ATG9A MUTATED 1 6 0 0 2
ATG9A WILD-TYPE 38 90 44 88 78
'ATG9A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S10999.  Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ATG9A MUTATED 0 3 4 0 3
ATG9A WILD-TYPE 26 76 69 82 55
'ATG9A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 2e-04 (Fisher's exact test), Q value = 0.006

Table S11000.  Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ATG9A MUTATED 1 7 2 0
ATG9A WILD-TYPE 126 44 69 69

Figure S3946.  Get High-res Image Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATG9A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S11001.  Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ATG9A MUTATED 0 3 5 1 1
ATG9A WILD-TYPE 84 82 80 68 46
'ATG9A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.04 (Fisher's exact test), Q value = 0.13

Table S11002.  Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ATG9A MUTATED 2 1 1 6
ATG9A WILD-TYPE 93 73 120 74

Figure S3947.  Get High-res Image Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ATG9A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 0.31

Table S11003.  Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ATG9A MUTATED 3 3 2 1 2 0
ATG9A WILD-TYPE 49 61 70 103 38 59
'ATG9A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.917 (Fisher's exact test), Q value = 0.95

Table S11004.  Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ATG9A MUTATED 7 2 2
ATG9A WILD-TYPE 210 73 97
'ATG9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.898 (Fisher's exact test), Q value = 0.94

Table S11005.  Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ATG9A MUTATED 4 2 2
ATG9A WILD-TYPE 117 106 70
'ATG9A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S11006.  Gene #1112: 'ATG9A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ATG9A MUTATED 3 1 1 0 3
ATG9A WILD-TYPE 85 65 44 55 44
'IGBP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S11007.  Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
IGBP1 MUTATED 1 5 0 0
IGBP1 WILD-TYPE 203 132 47 3
'IGBP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00722 (Fisher's exact test), Q value = 0.047

Table S11008.  Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
IGBP1 MUTATED 0 0 4 1 1
IGBP1 WILD-TYPE 39 96 40 87 79

Figure S3948.  Get High-res Image Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IGBP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.22

Table S11009.  Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
IGBP1 MUTATED 0 4 1 0 0
IGBP1 WILD-TYPE 26 75 72 82 58
'IGBP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.143 (Fisher's exact test), Q value = 0.27

Table S11010.  Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
IGBP1 MUTATED 1 1 3 0
IGBP1 WILD-TYPE 126 50 68 69
'IGBP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S11011.  Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
IGBP1 MUTATED 2 0 3 0 0
IGBP1 WILD-TYPE 82 85 82 69 47
'IGBP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S11012.  Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
IGBP1 MUTATED 0 0 4 1
IGBP1 WILD-TYPE 95 74 117 79
'IGBP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 0.66

Table S11013.  Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
IGBP1 MUTATED 0 1 3 1 0 1
IGBP1 WILD-TYPE 52 63 69 103 40 58
'IGBP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.635 (Fisher's exact test), Q value = 0.72

Table S11014.  Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
IGBP1 MUTATED 4 0 2
IGBP1 WILD-TYPE 213 75 97
'IGBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 0.68

Table S11015.  Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
IGBP1 MUTATED 4 1 1
IGBP1 WILD-TYPE 117 107 71
'IGBP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S11016.  Gene #1113: 'IGBP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
IGBP1 MUTATED 0 1 1 1 3
IGBP1 WILD-TYPE 88 65 44 54 44
'HIVEP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00769 (Fisher's exact test), Q value = 0.049

Table S11017.  Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
HIVEP2 MUTATED 8 18 1 0
HIVEP2 WILD-TYPE 196 119 46 3

Figure S3949.  Get High-res Image Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HIVEP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00394 (Fisher's exact test), Q value = 0.034

Table S11018.  Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
HIVEP2 MUTATED 1 14 2 1 4
HIVEP2 WILD-TYPE 38 82 42 87 76

Figure S3950.  Get High-res Image Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'HIVEP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.43

Table S11019.  Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
HIVEP2 MUTATED 2 9 3 3 4
HIVEP2 WILD-TYPE 24 70 70 79 54
'HIVEP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.024 (Fisher's exact test), Q value = 0.094

Table S11020.  Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
HIVEP2 MUTATED 5 8 6 2
HIVEP2 WILD-TYPE 122 43 65 67

Figure S3951.  Get High-res Image Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'HIVEP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0304 (Fisher's exact test), Q value = 0.11

Table S11021.  Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
HIVEP2 MUTATED 3 4 13 3 2
HIVEP2 WILD-TYPE 81 81 72 66 45

Figure S3952.  Get High-res Image Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'HIVEP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 0.074

Table S11022.  Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
HIVEP2 MUTATED 9 1 5 10
HIVEP2 WILD-TYPE 86 73 116 70

Figure S3953.  Get High-res Image Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0622 (Fisher's exact test), Q value = 0.16

Table S11023.  Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
HIVEP2 MUTATED 7 8 5 3 2 2
HIVEP2 WILD-TYPE 45 56 67 101 38 57
'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S11024.  Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
HIVEP2 MUTATED 20 2 5
HIVEP2 WILD-TYPE 197 73 94
'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 0.27

Table S11025.  Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
HIVEP2 MUTATED 10 3 6
HIVEP2 WILD-TYPE 111 105 66
'HIVEP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0133 (Fisher's exact test), Q value = 0.066

Table S11026.  Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
HIVEP2 MUTATED 5 0 4 3 7
HIVEP2 WILD-TYPE 83 66 41 52 40

Figure S3954.  Get High-res Image Gene #1114: 'HIVEP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM60A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 0.78

Table S11027.  Gene #1115: 'FAM60A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAM60A MUTATED 1 2 0 0
FAM60A WILD-TYPE 203 135 47 3
'FAM60A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 0.39

Table S11028.  Gene #1115: 'FAM60A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAM60A MUTATED 0 0 0 1 2
FAM60A WILD-TYPE 26 79 73 81 56
'FAM60A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.13

Table S11029.  Gene #1115: 'FAM60A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAM60A MUTATED 0 2 0 1
FAM60A WILD-TYPE 127 49 71 68

Figure S3955.  Get High-res Image Gene #1115: 'FAM60A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM60A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 0.78

Table S11030.  Gene #1115: 'FAM60A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAM60A MUTATED 1 1 0 0 1
FAM60A WILD-TYPE 83 84 85 69 46
'FAM60A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.787 (Fisher's exact test), Q value = 0.85

Table S11031.  Gene #1115: 'FAM60A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAM60A MUTATED 0 1 1 1
FAM60A WILD-TYPE 95 73 120 79
'FAM60A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 0.6

Table S11032.  Gene #1115: 'FAM60A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAM60A MUTATED 1 1 1 0 0 0
FAM60A WILD-TYPE 51 63 71 104 40 59
'FAM60A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 0.68

Table S11033.  Gene #1115: 'FAM60A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAM60A MUTATED 3 0 0
FAM60A WILD-TYPE 214 75 99
'ARV1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0708 (Fisher's exact test), Q value = 0.18

Table S11034.  Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARV1 MUTATED 0 4 1 0
ARV1 WILD-TYPE 204 133 46 3
'ARV1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0822 (Fisher's exact test), Q value = 0.19

Table S11035.  Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARV1 MUTATED 0 4 1 0 0
ARV1 WILD-TYPE 39 92 43 88 80
'ARV1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S11036.  Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARV1 MUTATED 0 0 2 0 1
ARV1 WILD-TYPE 26 79 71 82 57
'ARV1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00393 (Fisher's exact test), Q value = 0.034

Table S11037.  Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARV1 MUTATED 0 3 0 0
ARV1 WILD-TYPE 127 48 71 69

Figure S3956.  Get High-res Image Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ARV1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.533 (Fisher's exact test), Q value = 0.64

Table S11038.  Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARV1 MUTATED 0 1 2 2 0
ARV1 WILD-TYPE 84 84 83 67 47
'ARV1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0689 (Fisher's exact test), Q value = 0.17

Table S11039.  Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARV1 MUTATED 3 0 0 2
ARV1 WILD-TYPE 92 74 121 78
'ARV1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.261 (Fisher's exact test), Q value = 0.39

Table S11040.  Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARV1 MUTATED 1 0 1 1 2 0
ARV1 WILD-TYPE 51 64 71 103 38 59
'ARV1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 0.88

Table S11041.  Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARV1 MUTATED 4 0 1
ARV1 WILD-TYPE 213 75 98
'ARV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11042.  Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARV1 MUTATED 2 1 1
ARV1 WILD-TYPE 119 107 71
'ARV1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 0.65

Table S11043.  Gene #1116: 'ARV1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARV1 MUTATED 2 0 1 0 1
ARV1 WILD-TYPE 86 66 44 55 46
'ERI1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 0.85

Table S11044.  Gene #1117: 'ERI1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ERI1 MUTATED 3 1 0 0
ERI1 WILD-TYPE 201 136 47 3
'ERI1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0519 (Fisher's exact test), Q value = 0.15

Table S11045.  Gene #1117: 'ERI1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ERI1 MUTATED 1 3 0 0 0
ERI1 WILD-TYPE 25 76 73 82 58
'ERI1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S11046.  Gene #1117: 'ERI1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ERI1 MUTATED 1 0 3 0
ERI1 WILD-TYPE 126 51 68 69
'ERI1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.63 (Fisher's exact test), Q value = 0.72

Table S11047.  Gene #1117: 'ERI1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ERI1 MUTATED 0 1 2 0 0
ERI1 WILD-TYPE 84 84 83 69 47
'ERI1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 0.93

Table S11048.  Gene #1117: 'ERI1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ERI1 MUTATED 1 1 1 0
ERI1 WILD-TYPE 94 73 120 80
'ERI1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 0.73

Table S11049.  Gene #1117: 'ERI1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ERI1 MUTATED 0 2 1 1 0 0
ERI1 WILD-TYPE 52 62 71 103 40 59
'ERI1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.644 (Fisher's exact test), Q value = 0.73

Table S11050.  Gene #1117: 'ERI1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ERI1 MUTATED 3 1 0
ERI1 WILD-TYPE 214 74 99
'TM9SF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0227 (Fisher's exact test), Q value = 0.091

Table S11051.  Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TM9SF3 MUTATED 3 10 0 0
TM9SF3 WILD-TYPE 201 127 47 3

Figure S3957.  Get High-res Image Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TM9SF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S11052.  Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TM9SF3 MUTATED 1 6 2 1 1
TM9SF3 WILD-TYPE 38 90 42 87 79
'TM9SF3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0693 (Fisher's exact test), Q value = 0.17

Table S11053.  Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TM9SF3 MUTATED 1 6 3 0 1
TM9SF3 WILD-TYPE 25 73 70 82 57
'TM9SF3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 0.23

Table S11054.  Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TM9SF3 MUTATED 4 4 3 0
TM9SF3 WILD-TYPE 123 47 68 69
'TM9SF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 0.21

Table S11055.  Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TM9SF3 MUTATED 3 1 7 2 0
TM9SF3 WILD-TYPE 81 84 78 67 47
'TM9SF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0681 (Fisher's exact test), Q value = 0.17

Table S11056.  Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TM9SF3 MUTATED 4 0 3 6
TM9SF3 WILD-TYPE 91 74 118 74
'TM9SF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.997 (Fisher's exact test), Q value = 1

Table S11057.  Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TM9SF3 MUTATED 2 2 3 3 1 2
TM9SF3 WILD-TYPE 50 62 69 101 39 57
'TM9SF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S11058.  Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TM9SF3 MUTATED 9 0 4
TM9SF3 WILD-TYPE 208 75 95
'TM9SF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 0.55

Table S11059.  Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TM9SF3 MUTATED 6 3 1
TM9SF3 WILD-TYPE 115 105 71
'TM9SF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.43

Table S11060.  Gene #1118: 'TM9SF3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TM9SF3 MUTATED 4 0 1 2 3
TM9SF3 WILD-TYPE 84 66 44 53 44
'ATP2C1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S11061.  Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ATP2C1 MUTATED 3 8 2 0
ATP2C1 WILD-TYPE 201 129 45 3
'ATP2C1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0134 (Fisher's exact test), Q value = 0.067

Table S11062.  Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ATP2C1 MUTATED 1 5 3 0 0
ATP2C1 WILD-TYPE 38 91 41 88 80

Figure S3958.  Get High-res Image Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ATP2C1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 0.65

Table S11063.  Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ATP2C1 MUTATED 0 4 2 2 4
ATP2C1 WILD-TYPE 26 75 71 80 54
'ATP2C1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 7e-05 (Fisher's exact test), Q value = 0.0032

Table S11064.  Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ATP2C1 MUTATED 2 8 0 2
ATP2C1 WILD-TYPE 125 43 71 67

Figure S3959.  Get High-res Image Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ATP2C1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S11065.  Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ATP2C1 MUTATED 2 2 7 1 0
ATP2C1 WILD-TYPE 82 83 78 68 47
'ATP2C1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 0.56

Table S11066.  Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ATP2C1 MUTATED 2 2 3 5
ATP2C1 WILD-TYPE 93 72 118 75
'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00177 (Fisher's exact test), Q value = 0.022

Table S11067.  Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ATP2C1 MUTATED 2 7 3 0 1 0
ATP2C1 WILD-TYPE 50 57 69 104 39 59

Figure S3960.  Get High-res Image Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.02 (Fisher's exact test), Q value = 0.084

Table S11068.  Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ATP2C1 MUTATED 12 0 1
ATP2C1 WILD-TYPE 205 75 98

Figure S3961.  Get High-res Image Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0198 (Fisher's exact test), Q value = 0.083

Table S11069.  Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ATP2C1 MUTATED 4 0 5
ATP2C1 WILD-TYPE 117 108 67

Figure S3962.  Get High-res Image Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'ATP2C1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S11070.  Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ATP2C1 MUTATED 2 0 3 0 4
ATP2C1 WILD-TYPE 86 66 42 55 43

Figure S3963.  Get High-res Image Gene #1119: 'ATP2C1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'STK36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S11071.  Gene #1120: 'STK36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
STK36 MUTATED 2 6 0 0
STK36 WILD-TYPE 202 131 47 3
'STK36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 0.96

Table S11072.  Gene #1120: 'STK36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
STK36 MUTATED 1 2 1 1 1
STK36 WILD-TYPE 38 94 43 87 79
'STK36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.674 (Fisher's exact test), Q value = 0.75

Table S11073.  Gene #1120: 'STK36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
STK36 MUTATED 1 3 1 1 1
STK36 WILD-TYPE 25 76 72 81 57
'STK36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 0.42

Table S11074.  Gene #1120: 'STK36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
STK36 MUTATED 2 3 1 1
STK36 WILD-TYPE 125 48 70 68
'STK36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S11075.  Gene #1120: 'STK36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
STK36 MUTATED 1 2 5 0 0
STK36 WILD-TYPE 83 83 80 69 47
'STK36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 0.48

Table S11076.  Gene #1120: 'STK36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
STK36 MUTATED 1 1 2 4
STK36 WILD-TYPE 94 73 119 76
'STK36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0929 (Fisher's exact test), Q value = 0.21

Table S11077.  Gene #1120: 'STK36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
STK36 MUTATED 2 4 0 1 0 1
STK36 WILD-TYPE 50 60 72 103 40 58
'STK36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 0.6

Table S11078.  Gene #1120: 'STK36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
STK36 MUTATED 6 0 2
STK36 WILD-TYPE 211 75 97
'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 0.92

Table S11079.  Gene #1120: 'STK36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
STK36 MUTATED 2 2 2
STK36 WILD-TYPE 119 106 70
'STK36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S11080.  Gene #1120: 'STK36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
STK36 MUTATED 2 0 2 2 0
STK36 WILD-TYPE 86 66 43 53 47
'ISM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.023 (Fisher's exact test), Q value = 0.091

Table S11081.  Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ISM1 MUTATED 3 10 0 0
ISM1 WILD-TYPE 201 127 47 3

Figure S3964.  Get High-res Image Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ISM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0586 (Fisher's exact test), Q value = 0.16

Table S11082.  Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ISM1 MUTATED 0 7 1 3 0
ISM1 WILD-TYPE 39 89 43 85 80
'ISM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 0.67

Table S11083.  Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ISM1 MUTATED 1 4 3 1 1
ISM1 WILD-TYPE 25 75 70 81 57
'ISM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S11084.  Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ISM1 MUTATED 2 4 3 1
ISM1 WILD-TYPE 125 47 68 68
'ISM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S11085.  Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ISM1 MUTATED 2 1 6 1 2
ISM1 WILD-TYPE 82 84 79 68 45
'ISM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 0.38

Table S11086.  Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ISM1 MUTATED 4 1 2 5
ISM1 WILD-TYPE 91 73 119 75
'ISM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S11087.  Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ISM1 MUTATED 2 5 1 2 0 2
ISM1 WILD-TYPE 50 59 71 102 40 57
'ISM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 0.63

Table S11088.  Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ISM1 MUTATED 9 1 2
ISM1 WILD-TYPE 208 74 97
'ISM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S11089.  Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ISM1 MUTATED 6 1 3
ISM1 WILD-TYPE 115 107 69
'ISM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0546 (Fisher's exact test), Q value = 0.15

Table S11090.  Gene #1121: 'ISM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ISM1 MUTATED 2 0 3 1 4
ISM1 WILD-TYPE 86 66 42 54 43
'GLTPD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0627 (Fisher's exact test), Q value = 0.16

Table S11091.  Gene #1122: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GLTPD1 MUTATED 0 4 0 0
GLTPD1 WILD-TYPE 204 133 47 3
'GLTPD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 0.46

Table S11092.  Gene #1122: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GLTPD1 MUTATED 0 3 0 0 1
GLTPD1 WILD-TYPE 39 93 44 88 79
'GLTPD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.42 (Fisher's exact test), Q value = 0.54

Table S11093.  Gene #1122: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GLTPD1 MUTATED 1 1 1 0 1
GLTPD1 WILD-TYPE 25 78 72 82 57
'GLTPD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S11094.  Gene #1122: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GLTPD1 MUTATED 1 2 1 0
GLTPD1 WILD-TYPE 126 49 70 69
'GLTPD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.631 (Fisher's exact test), Q value = 0.72

Table S11095.  Gene #1122: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GLTPD1 MUTATED 0 1 2 0 0
GLTPD1 WILD-TYPE 84 84 83 69 47
'GLTPD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S11096.  Gene #1122: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GLTPD1 MUTATED 0 1 1 1
GLTPD1 WILD-TYPE 95 73 120 79
'GLTPD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 0.73

Table S11097.  Gene #1122: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GLTPD1 MUTATED 0 2 1 1 0 0
GLTPD1 WILD-TYPE 52 62 71 103 40 59
'GLTPD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S11098.  Gene #1122: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GLTPD1 MUTATED 3 1 0
GLTPD1 WILD-TYPE 214 74 99
'GLTPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.553 (Fisher's exact test), Q value = 0.65

Table S11099.  Gene #1122: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GLTPD1 MUTATED 1 1 2
GLTPD1 WILD-TYPE 120 107 70
'GLTPD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.124 (Fisher's exact test), Q value = 0.25

Table S11100.  Gene #1122: 'GLTPD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GLTPD1 MUTATED 0 1 2 0 1
GLTPD1 WILD-TYPE 88 65 43 55 46
'CLDN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S11101.  Gene #1123: 'CLDN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CLDN5 MUTATED 0 2 1 0
CLDN5 WILD-TYPE 204 135 46 3
'CLDN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.544 (Fisher's exact test), Q value = 0.65

Table S11102.  Gene #1123: 'CLDN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CLDN5 MUTATED 1 2 0 0 1
CLDN5 WILD-TYPE 38 94 44 88 79
'CLDN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S11103.  Gene #1123: 'CLDN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CLDN5 MUTATED 0 0 2 1 1
CLDN5 WILD-TYPE 84 85 83 68 46
'CLDN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0404 (Fisher's exact test), Q value = 0.13

Table S11104.  Gene #1123: 'CLDN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CLDN5 MUTATED 1 0 0 3
CLDN5 WILD-TYPE 94 74 121 77

Figure S3965.  Get High-res Image Gene #1123: 'CLDN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CLDN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S11105.  Gene #1123: 'CLDN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CLDN5 MUTATED 2 0 1 1 0 0
CLDN5 WILD-TYPE 50 64 71 103 40 59
'CLDN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.395 (Fisher's exact test), Q value = 0.52

Table S11106.  Gene #1123: 'CLDN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CLDN5 MUTATED 4 0 0
CLDN5 WILD-TYPE 213 75 99
'CLDN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.31

Table S11107.  Gene #1123: 'CLDN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CLDN5 MUTATED 3 0 0
CLDN5 WILD-TYPE 118 108 72
'CLDN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S11108.  Gene #1123: 'CLDN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CLDN5 MUTATED 1 0 0 0 2
CLDN5 WILD-TYPE 87 66 45 55 45
'D4S234E MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0566 (Fisher's exact test), Q value = 0.15

Table S11109.  Gene #1124: 'D4S234E MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
D4S234E MUTATED 1 6 0 0
D4S234E WILD-TYPE 203 131 47 3
'D4S234E MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.067 (Fisher's exact test), Q value = 0.17

Table S11110.  Gene #1124: 'D4S234E MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
D4S234E MUTATED 0 3 2 0 0
D4S234E WILD-TYPE 39 93 42 88 80
'D4S234E MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 0.41

Table S11111.  Gene #1124: 'D4S234E MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
D4S234E MUTATED 0 1 0 2 3
D4S234E WILD-TYPE 26 78 73 80 55
'D4S234E MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S11112.  Gene #1124: 'D4S234E MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
D4S234E MUTATED 2 2 0 2
D4S234E WILD-TYPE 125 49 71 67
'D4S234E MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.402 (Fisher's exact test), Q value = 0.52

Table S11113.  Gene #1124: 'D4S234E MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
D4S234E MUTATED 0 3 2 1 0
D4S234E WILD-TYPE 84 82 83 68 47
'D4S234E MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S11114.  Gene #1124: 'D4S234E MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
D4S234E MUTATED 2 3 1 0
D4S234E WILD-TYPE 93 71 120 80
'D4S234E MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 0.56

Table S11115.  Gene #1124: 'D4S234E MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
D4S234E MUTATED 1 3 1 1 1 0
D4S234E WILD-TYPE 51 61 71 103 39 59
'D4S234E MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 0.92

Table S11116.  Gene #1124: 'D4S234E MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
D4S234E MUTATED 5 1 1
D4S234E WILD-TYPE 212 74 98
'D4S234E MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S11117.  Gene #1124: 'D4S234E MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
D4S234E MUTATED 1 2 1
D4S234E WILD-TYPE 120 106 71
'D4S234E MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.496 (Fisher's exact test), Q value = 0.6

Table S11118.  Gene #1124: 'D4S234E MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
D4S234E MUTATED 3 1 0 0 0
D4S234E WILD-TYPE 85 65 45 55 47
'EGLN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 0.33

Table S11119.  Gene #1125: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EGLN1 MUTATED 1 4 0 0
EGLN1 WILD-TYPE 203 133 47 3
'EGLN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 0.18

Table S11120.  Gene #1125: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EGLN1 MUTATED 0 4 0 0 0
EGLN1 WILD-TYPE 39 92 44 88 80
'EGLN1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.55

Table S11121.  Gene #1125: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EGLN1 MUTATED 0 0 2 2 0
EGLN1 WILD-TYPE 26 79 71 80 58
'EGLN1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S11122.  Gene #1125: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EGLN1 MUTATED 0 1 1 2
EGLN1 WILD-TYPE 127 50 70 67
'EGLN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 0.34

Table S11123.  Gene #1125: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EGLN1 MUTATED 0 3 2 0 0
EGLN1 WILD-TYPE 84 82 83 69 47
'EGLN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.087 (Fisher's exact test), Q value = 0.2

Table S11124.  Gene #1125: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EGLN1 MUTATED 1 3 0 1
EGLN1 WILD-TYPE 94 71 121 79
'EGLN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 0.53

Table S11125.  Gene #1125: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EGLN1 MUTATED 1 2 0 1 1 0
EGLN1 WILD-TYPE 51 62 72 103 39 59
'EGLN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.6 (Fisher's exact test), Q value = 0.69

Table S11126.  Gene #1125: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EGLN1 MUTATED 3 0 2
EGLN1 WILD-TYPE 214 75 97
'EGLN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11127.  Gene #1125: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EGLN1 MUTATED 2 1 1
EGLN1 WILD-TYPE 119 107 71
'EGLN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 0.91

Table S11128.  Gene #1125: 'EGLN1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EGLN1 MUTATED 1 1 1 0 1
EGLN1 WILD-TYPE 87 65 44 55 46
'C1ORF131 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.11

Table S11129.  Gene #1126: 'C1ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
C1ORF131 MUTATED 0 5 0 0
C1ORF131 WILD-TYPE 204 132 47 3

Figure S3966.  Get High-res Image Gene #1126: 'C1ORF131 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'C1ORF131 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 0.3

Table S11130.  Gene #1126: 'C1ORF131 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
C1ORF131 MUTATED 0 3 1 0 0
C1ORF131 WILD-TYPE 39 93 43 88 80
'C1ORF131 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.378 (Fisher's exact test), Q value = 0.5

Table S11131.  Gene #1126: 'C1ORF131 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
C1ORF131 MUTATED 0 1 3 1 0
C1ORF131 WILD-TYPE 84 84 82 68 47
'C1ORF131 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0479 (Fisher's exact test), Q value = 0.14

Table S11132.  Gene #1126: 'C1ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
C1ORF131 MUTATED 2 0 0 3
C1ORF131 WILD-TYPE 93 74 121 77

Figure S3967.  Get High-res Image Gene #1126: 'C1ORF131 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'C1ORF131 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0564 (Fisher's exact test), Q value = 0.15

Table S11133.  Gene #1126: 'C1ORF131 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
C1ORF131 MUTATED 2 2 0 0 1 0
C1ORF131 WILD-TYPE 50 62 72 104 39 59
'C1ORF131 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 0.88

Table S11134.  Gene #1126: 'C1ORF131 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
C1ORF131 MUTATED 4 0 1
C1ORF131 WILD-TYPE 213 75 98
'C1ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.458 (Fisher's exact test), Q value = 0.57

Table S11135.  Gene #1126: 'C1ORF131 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
C1ORF131 MUTATED 3 1 0
C1ORF131 WILD-TYPE 118 107 72
'C1ORF131 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S11136.  Gene #1126: 'C1ORF131 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
C1ORF131 MUTATED 2 0 0 0 2
C1ORF131 WILD-TYPE 86 66 45 55 45
'CSF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 0.18

Table S11137.  Gene #1127: 'CSF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CSF1 MUTATED 0 4 1 0
CSF1 WILD-TYPE 204 133 46 3
'CSF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S11138.  Gene #1127: 'CSF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CSF1 MUTATED 1 3 0 0 0
CSF1 WILD-TYPE 38 93 44 88 80
'CSF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S11139.  Gene #1127: 'CSF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CSF1 MUTATED 0 0 2 0 2
CSF1 WILD-TYPE 26 79 71 82 56
'CSF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S11140.  Gene #1127: 'CSF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CSF1 MUTATED 3 1 0 0
CSF1 WILD-TYPE 124 50 71 69
'CSF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S11141.  Gene #1127: 'CSF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CSF1 MUTATED 0 1 3 1 0
CSF1 WILD-TYPE 84 84 82 68 47
'CSF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0967 (Fisher's exact test), Q value = 0.21

Table S11142.  Gene #1127: 'CSF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CSF1 MUTATED 1 1 0 3
CSF1 WILD-TYPE 94 73 121 77
'CSF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.961 (Fisher's exact test), Q value = 0.99

Table S11143.  Gene #1127: 'CSF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CSF1 MUTATED 1 1 1 2 0 0
CSF1 WILD-TYPE 51 63 71 102 40 59
'CSF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11144.  Gene #1127: 'CSF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CSF1 MUTATED 3 1 1
CSF1 WILD-TYPE 214 74 98
'CSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.79 (Fisher's exact test), Q value = 0.85

Table S11145.  Gene #1127: 'CSF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CSF1 MUTATED 2 1 0
CSF1 WILD-TYPE 119 107 72
'CSF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.928 (Fisher's exact test), Q value = 0.96

Table S11146.  Gene #1127: 'CSF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CSF1 MUTATED 1 1 0 0 1
CSF1 WILD-TYPE 87 65 45 55 46
'TBC1D5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00301 (Fisher's exact test), Q value = 0.029

Table S11147.  Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TBC1D5 MUTATED 0 8 1 0
TBC1D5 WILD-TYPE 204 129 46 3

Figure S3968.  Get High-res Image Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TBC1D5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 0.45

Table S11148.  Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TBC1D5 MUTATED 0 2 2 0 2
TBC1D5 WILD-TYPE 39 94 42 88 78
'TBC1D5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.344 (Fisher's exact test), Q value = 0.47

Table S11149.  Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TBC1D5 MUTATED 0 5 1 1 2
TBC1D5 WILD-TYPE 26 74 72 81 56
'TBC1D5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0574 (Fisher's exact test), Q value = 0.16

Table S11150.  Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TBC1D5 MUTATED 1 3 4 1
TBC1D5 WILD-TYPE 126 48 67 68
'TBC1D5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0107 (Fisher's exact test), Q value = 0.059

Table S11151.  Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TBC1D5 MUTATED 0 1 6 0 1
TBC1D5 WILD-TYPE 84 84 79 69 46

Figure S3969.  Get High-res Image Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TBC1D5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 0.6

Table S11152.  Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TBC1D5 MUTATED 2 3 1 2
TBC1D5 WILD-TYPE 93 71 120 78
'TBC1D5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00733 (Fisher's exact test), Q value = 0.048

Table S11153.  Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TBC1D5 MUTATED 1 6 0 2 0 0
TBC1D5 WILD-TYPE 51 58 72 102 40 59

Figure S3970.  Get High-res Image Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TBC1D5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S11154.  Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TBC1D5 MUTATED 6 3 0
TBC1D5 WILD-TYPE 211 72 99
'TBC1D5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0153 (Fisher's exact test), Q value = 0.072

Table S11155.  Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TBC1D5 MUTATED 0 2 4
TBC1D5 WILD-TYPE 121 106 68

Figure S3971.  Get High-res Image Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TBC1D5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S11156.  Gene #1128: 'TBC1D5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TBC1D5 MUTATED 1 2 3 0 0
TBC1D5 WILD-TYPE 87 64 42 55 47
'ZNF428 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0624 (Fisher's exact test), Q value = 0.16

Table S11157.  Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF428 MUTATED 0 4 0 0
ZNF428 WILD-TYPE 204 133 47 3
'ZNF428 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 0.084

Table S11158.  Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF428 MUTATED 0 5 0 0 0
ZNF428 WILD-TYPE 39 91 44 88 80

Figure S3972.  Get High-res Image Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ZNF428 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 0.67

Table S11159.  Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF428 MUTATED 0 2 1 0 0
ZNF428 WILD-TYPE 26 77 72 82 58
'ZNF428 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0582 (Fisher's exact test), Q value = 0.16

Table S11160.  Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF428 MUTATED 0 2 1 0
ZNF428 WILD-TYPE 127 49 70 69
'ZNF428 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0849 (Fisher's exact test), Q value = 0.2

Table S11161.  Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF428 MUTATED 0 0 3 0 0
ZNF428 WILD-TYPE 84 85 82 69 47
'ZNF428 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0178 (Fisher's exact test), Q value = 0.078

Table S11162.  Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF428 MUTATED 0 0 0 3
ZNF428 WILD-TYPE 95 74 121 77

Figure S3973.  Get High-res Image Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'ZNF428 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0505 (Fisher's exact test), Q value = 0.14

Table S11163.  Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF428 MUTATED 3 1 1 0 0 0
ZNF428 WILD-TYPE 49 63 71 104 40 59
'ZNF428 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.38

Table S11164.  Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF428 MUTATED 5 0 0
ZNF428 WILD-TYPE 212 75 99
'ZNF428 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 0.34

Table S11165.  Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF428 MUTATED 3 0 2
ZNF428 WILD-TYPE 118 108 70
'ZNF428 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00103 (Fisher's exact test), Q value = 0.016

Table S11166.  Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF428 MUTATED 0 0 1 0 4
ZNF428 WILD-TYPE 88 66 44 55 43

Figure S3974.  Get High-res Image Gene #1129: 'ZNF428 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SLC38A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 0.16

Table S11167.  Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC38A1 MUTATED 1 6 0 0
SLC38A1 WILD-TYPE 203 131 47 3
'SLC38A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S11168.  Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC38A1 MUTATED 0 3 1 0 0
SLC38A1 WILD-TYPE 39 93 43 88 80
'SLC38A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0461 (Fisher's exact test), Q value = 0.14

Table S11169.  Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC38A1 MUTATED 0 5 2 0 0
SLC38A1 WILD-TYPE 26 74 71 82 58

Figure S3975.  Get High-res Image Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'SLC38A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00133 (Fisher's exact test), Q value = 0.018

Table S11170.  Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC38A1 MUTATED 0 4 3 0
SLC38A1 WILD-TYPE 127 47 68 69

Figure S3976.  Get High-res Image Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC38A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0221 (Fisher's exact test), Q value = 0.089

Table S11171.  Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC38A1 MUTATED 0 0 4 0 1
SLC38A1 WILD-TYPE 84 85 81 69 46

Figure S3977.  Get High-res Image Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC38A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0958 (Fisher's exact test), Q value = 0.21

Table S11172.  Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC38A1 MUTATED 1 1 0 3
SLC38A1 WILD-TYPE 94 73 121 77
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00223 (Fisher's exact test), Q value = 0.024

Table S11173.  Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC38A1 MUTATED 3 4 0 0 0 0
SLC38A1 WILD-TYPE 49 60 72 104 40 59

Figure S3978.  Get High-res Image Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 0.62

Table S11174.  Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC38A1 MUTATED 5 0 2
SLC38A1 WILD-TYPE 212 75 97
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 0.58

Table S11175.  Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC38A1 MUTATED 2 0 1
SLC38A1 WILD-TYPE 119 108 71
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0433 (Fisher's exact test), Q value = 0.13

Table S11176.  Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC38A1 MUTATED 0 0 1 0 2
SLC38A1 WILD-TYPE 88 66 44 55 45

Figure S3979.  Get High-res Image Gene #1130: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'ZNF570 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S11177.  Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ZNF570 MUTATED 4 8 0 0
ZNF570 WILD-TYPE 200 129 47 3
'ZNF570 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 0.78

Table S11178.  Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ZNF570 MUTATED 1 4 2 1 2
ZNF570 WILD-TYPE 38 92 42 87 78
'ZNF570 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.618 (Fisher's exact test), Q value = 0.71

Table S11179.  Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ZNF570 MUTATED 0 4 3 1 2
ZNF570 WILD-TYPE 26 75 70 81 56
'ZNF570 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 0.74

Table S11180.  Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ZNF570 MUTATED 3 3 2 2
ZNF570 WILD-TYPE 124 48 69 67
'ZNF570 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 0.48

Table S11181.  Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ZNF570 MUTATED 1 3 5 2 0
ZNF570 WILD-TYPE 83 82 80 67 47
'ZNF570 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 0.56

Table S11182.  Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ZNF570 MUTATED 2 3 2 4
ZNF570 WILD-TYPE 93 71 119 76
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0277 (Fisher's exact test), Q value = 0.1

Table S11183.  Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ZNF570 MUTATED 3 5 0 1 2 1
ZNF570 WILD-TYPE 49 59 72 103 38 58

Figure S3980.  Get High-res Image Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ZNF570 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S11184.  Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ZNF570 MUTATED 9 2 1
ZNF570 WILD-TYPE 208 73 98
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S11185.  Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ZNF570 MUTATED 4 1 2
ZNF570 WILD-TYPE 117 107 70
'ZNF570 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.977 (Fisher's exact test), Q value = 1

Table S11186.  Gene #1131: 'ZNF570 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ZNF570 MUTATED 3 1 1 1 1
ZNF570 WILD-TYPE 85 65 44 54 46
'GPR115 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0291 (Fisher's exact test), Q value = 0.11

Table S11187.  Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GPR115 MUTATED 0 5 0 0
GPR115 WILD-TYPE 204 132 47 3

Figure S3981.  Get High-res Image Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GPR115 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S11188.  Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GPR115 MUTATED 0 3 0 0 0
GPR115 WILD-TYPE 39 93 44 88 80
'GPR115 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 0.57

Table S11189.  Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GPR115 MUTATED 0 2 1 0 2
GPR115 WILD-TYPE 26 77 72 82 56
'GPR115 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0648 (Fisher's exact test), Q value = 0.17

Table S11190.  Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GPR115 MUTATED 1 3 1 0
GPR115 WILD-TYPE 126 48 70 69
'GPR115 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.726 (Fisher's exact test), Q value = 0.8

Table S11191.  Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GPR115 MUTATED 0 1 2 1 1
GPR115 WILD-TYPE 84 84 83 68 46
'GPR115 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.062

Table S11192.  Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GPR115 MUTATED 1 0 0 4
GPR115 WILD-TYPE 94 74 121 76

Figure S3982.  Get High-res Image Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'GPR115 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S11193.  Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GPR115 MUTATED 2 2 1 0 0 0
GPR115 WILD-TYPE 50 62 71 104 40 59
'GPR115 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 0.38

Table S11194.  Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GPR115 MUTATED 5 0 0
GPR115 WILD-TYPE 212 75 99
'GPR115 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 0.57

Table S11195.  Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GPR115 MUTATED 2 0 1
GPR115 WILD-TYPE 119 108 71
'GPR115 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.63

Table S11196.  Gene #1132: 'GPR115 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GPR115 MUTATED 2 0 0 0 1
GPR115 WILD-TYPE 86 66 45 55 46
'SLC45A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00046 (Fisher's exact test), Q value = 0.01

Table S11197.  Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC45A4 MUTATED 3 15 0 0
SLC45A4 WILD-TYPE 201 122 47 3

Figure S3983.  Get High-res Image Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC45A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00045 (Fisher's exact test), Q value = 0.0099

Table S11198.  Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC45A4 MUTATED 0 12 1 0 3
SLC45A4 WILD-TYPE 39 84 43 88 77

Figure S3984.  Get High-res Image Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC45A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S11199.  Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC45A4 MUTATED 1 6 7 1 2
SLC45A4 WILD-TYPE 25 73 66 81 56
'SLC45A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00243 (Fisher's exact test), Q value = 0.026

Table S11200.  Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC45A4 MUTATED 3 8 5 1
SLC45A4 WILD-TYPE 124 43 66 68

Figure S3985.  Get High-res Image Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00103 (Fisher's exact test), Q value = 0.016

Table S11201.  Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC45A4 MUTATED 0 4 11 1 2
SLC45A4 WILD-TYPE 84 81 74 68 45

Figure S3986.  Get High-res Image Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SLC45A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S11202.  Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC45A4 MUTATED 4 3 3 8
SLC45A4 WILD-TYPE 91 71 118 72
'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.22

Table S11203.  Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC45A4 MUTATED 6 5 3 4 0 1
SLC45A4 WILD-TYPE 46 59 69 100 40 58
'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0711 (Fisher's exact test), Q value = 0.18

Table S11204.  Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC45A4 MUTATED 15 3 1
SLC45A4 WILD-TYPE 202 72 98
'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0155 (Fisher's exact test), Q value = 0.073

Table S11205.  Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC45A4 MUTATED 4 2 8
SLC45A4 WILD-TYPE 117 106 64

Figure S3987.  Get High-res Image Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'SLC45A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.506 (Fisher's exact test), Q value = 0.61

Table S11206.  Gene #1133: 'SLC45A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC45A4 MUTATED 4 2 3 1 4
SLC45A4 WILD-TYPE 84 64 42 54 43
'NKX2-3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S11207.  Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
NKX2-3 MUTATED 2 6 0 0
NKX2-3 WILD-TYPE 202 131 47 3
'NKX2-3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0851 (Fisher's exact test), Q value = 0.2

Table S11208.  Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
NKX2-3 MUTATED 0 5 0 1 0
NKX2-3 WILD-TYPE 39 91 44 87 80
'NKX2-3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 0.92

Table S11209.  Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
NKX2-3 MUTATED 0 2 2 1 2
NKX2-3 WILD-TYPE 26 77 71 81 56
'NKX2-3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0504 (Fisher's exact test), Q value = 0.14

Table S11210.  Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
NKX2-3 MUTATED 1 4 1 1
NKX2-3 WILD-TYPE 126 47 70 68
'NKX2-3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S11211.  Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
NKX2-3 MUTATED 1 2 1 1 3
NKX2-3 WILD-TYPE 83 83 84 68 44
'NKX2-3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.19 (Fisher's exact test), Q value = 0.32

Table S11212.  Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
NKX2-3 MUTATED 1 2 1 4
NKX2-3 WILD-TYPE 94 72 120 76
'NKX2-3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.17

Table S11213.  Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
NKX2-3 MUTATED 4 2 1 1 0 0
NKX2-3 WILD-TYPE 48 62 71 103 40 59
'NKX2-3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S11214.  Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
NKX2-3 MUTATED 6 1 1
NKX2-3 WILD-TYPE 211 74 98
'NKX2-3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S11215.  Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
NKX2-3 MUTATED 5 1 0
NKX2-3 WILD-TYPE 116 107 72
'NKX2-3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00052 (Fisher's exact test), Q value = 0.011

Table S11216.  Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
NKX2-3 MUTATED 0 1 0 0 5
NKX2-3 WILD-TYPE 88 65 45 55 42

Figure S3988.  Get High-res Image Gene #1134: 'NKX2-3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S11217.  Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EPHA3 MUTATED 13 14 1 0
EPHA3 WILD-TYPE 191 123 46 3
'EPHA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0696 (Fisher's exact test), Q value = 0.17

Table S11218.  Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EPHA3 MUTATED 2 11 4 6 1
EPHA3 WILD-TYPE 37 85 40 82 79
'EPHA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00349 (Fisher's exact test), Q value = 0.032

Table S11219.  Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EPHA3 MUTATED 1 14 6 1 4
EPHA3 WILD-TYPE 25 65 67 81 54

Figure S3989.  Get High-res Image Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'EPHA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00852 (Fisher's exact test), Q value = 0.052

Table S11220.  Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EPHA3 MUTATED 6 7 11 2
EPHA3 WILD-TYPE 121 44 60 67

Figure S3990.  Get High-res Image Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S11221.  Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EPHA3 MUTATED 6 1 12 3 4
EPHA3 WILD-TYPE 78 84 73 66 43

Figure S3991.  Get High-res Image Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'EPHA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0758 (Fisher's exact test), Q value = 0.18

Table S11222.  Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EPHA3 MUTATED 8 1 8 9
EPHA3 WILD-TYPE 87 73 113 71
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.5

Table S11223.  Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EPHA3 MUTATED 7 6 3 5 3 4
EPHA3 WILD-TYPE 45 58 69 99 37 55
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 0.59

Table S11224.  Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EPHA3 MUTATED 19 4 5
EPHA3 WILD-TYPE 198 71 94
'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00639 (Fisher's exact test), Q value = 0.044

Table S11225.  Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EPHA3 MUTATED 9 2 10
EPHA3 WILD-TYPE 112 106 62

Figure S3992.  Get High-res Image Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'EPHA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0951 (Fisher's exact test), Q value = 0.21

Table S11226.  Gene #1135: 'EPHA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EPHA3 MUTATED 8 1 4 2 6
EPHA3 WILD-TYPE 80 65 41 53 41
'GABRG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00453 (Fisher's exact test), Q value = 0.036

Table S11227.  Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
GABRG3 MUTATED 0 7 2 0
GABRG3 WILD-TYPE 204 130 45 3

Figure S3993.  Get High-res Image Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'GABRG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0218 (Fisher's exact test), Q value = 0.089

Table S11228.  Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
GABRG3 MUTATED 1 4 3 0 0
GABRG3 WILD-TYPE 38 92 41 88 80

Figure S3994.  Get High-res Image Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'GABRG3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 0.68

Table S11229.  Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
GABRG3 MUTATED 0 2 1 1 3
GABRG3 WILD-TYPE 26 77 72 81 55
'GABRG3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00105 (Fisher's exact test), Q value = 0.016

Table S11230.  Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
GABRG3 MUTATED 0 5 1 1
GABRG3 WILD-TYPE 127 46 70 68

Figure S3995.  Get High-res Image Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'GABRG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00846 (Fisher's exact test), Q value = 0.051

Table S11231.  Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
GABRG3 MUTATED 0 2 6 0 0
GABRG3 WILD-TYPE 84 83 79 69 47

Figure S3996.  Get High-res Image Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GABRG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 0.82

Table S11232.  Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
GABRG3 MUTATED 2 1 2 3
GABRG3 WILD-TYPE 93 73 119 77
'GABRG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 0.58

Table S11233.  Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
GABRG3 MUTATED 1 1 4 2 1 0
GABRG3 WILD-TYPE 51 63 68 102 39 59
'GABRG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11234.  Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
GABRG3 MUTATED 5 2 2
GABRG3 WILD-TYPE 212 73 97
'GABRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.534 (Fisher's exact test), Q value = 0.64

Table S11235.  Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
GABRG3 MUTATED 2 3 3
GABRG3 WILD-TYPE 119 105 69
'GABRG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 0.49

Table S11236.  Gene #1136: 'GABRG3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
GABRG3 MUTATED 5 1 1 0 1
GABRG3 WILD-TYPE 83 65 44 55 46
'EPHA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 8e-04 (Fisher's exact test), Q value = 0.014

Table S11237.  Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
EPHA10 MUTATED 3 14 0 0
EPHA10 WILD-TYPE 201 123 47 3

Figure S3997.  Get High-res Image Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'EPHA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0694 (Fisher's exact test), Q value = 0.17

Table S11238.  Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
EPHA10 MUTATED 2 6 4 1 1
EPHA10 WILD-TYPE 37 90 40 87 79
'EPHA10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0536 (Fisher's exact test), Q value = 0.15

Table S11239.  Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
EPHA10 MUTATED 2 7 1 1 4
EPHA10 WILD-TYPE 24 72 72 81 54
'EPHA10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0338 (Fisher's exact test), Q value = 0.11

Table S11240.  Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
EPHA10 MUTATED 3 5 6 1
EPHA10 WILD-TYPE 124 46 65 68

Figure S3998.  Get High-res Image Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'EPHA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 0.25

Table S11241.  Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
EPHA10 MUTATED 1 3 8 3 1
EPHA10 WILD-TYPE 83 82 77 66 46
'EPHA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0525 (Fisher's exact test), Q value = 0.15

Table S11242.  Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
EPHA10 MUTATED 3 3 2 8
EPHA10 WILD-TYPE 92 71 119 72
'EPHA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00088 (Fisher's exact test), Q value = 0.015

Table S11243.  Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
EPHA10 MUTATED 4 9 2 2 0 0
EPHA10 WILD-TYPE 48 55 70 102 40 59

Figure S3999.  Get High-res Image Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'EPHA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00353 (Fisher's exact test), Q value = 0.032

Table S11244.  Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
EPHA10 MUTATED 16 0 1
EPHA10 WILD-TYPE 201 75 98

Figure S4000.  Get High-res Image Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'EPHA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S11245.  Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
EPHA10 MUTATED 6 2 5
EPHA10 WILD-TYPE 115 106 67
'EPHA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0511 (Fisher's exact test), Q value = 0.15

Table S11246.  Gene #1137: 'EPHA10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
EPHA10 MUTATED 4 0 4 1 4
EPHA10 WILD-TYPE 84 66 41 54 43
'SLC44A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.017

Table S11247.  Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SLC44A4 MUTATED 1 11 3 0
SLC44A4 WILD-TYPE 203 126 44 3

Figure S4001.  Get High-res Image Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SLC44A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.78

Table S11248.  Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SLC44A4 MUTATED 1 4 2 1 2
SLC44A4 WILD-TYPE 38 92 42 87 78
'SLC44A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 0.54

Table S11249.  Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SLC44A4 MUTATED 0 4 4 1 1
SLC44A4 WILD-TYPE 26 75 69 81 57
'SLC44A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00764 (Fisher's exact test), Q value = 0.049

Table S11250.  Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SLC44A4 MUTATED 2 6 1 1
SLC44A4 WILD-TYPE 125 45 70 68

Figure S4002.  Get High-res Image Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SLC44A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 0.54

Table S11251.  Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SLC44A4 MUTATED 1 3 5 2 3
SLC44A4 WILD-TYPE 83 82 80 67 44
'SLC44A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 0.34

Table S11252.  Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SLC44A4 MUTATED 3 3 2 6
SLC44A4 WILD-TYPE 92 71 119 74
'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.218 (Fisher's exact test), Q value = 0.35

Table S11253.  Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SLC44A4 MUTATED 1 6 3 2 2 1
SLC44A4 WILD-TYPE 51 58 69 102 38 58
'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.457 (Fisher's exact test), Q value = 0.57

Table S11254.  Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SLC44A4 MUTATED 11 2 2
SLC44A4 WILD-TYPE 206 73 97
'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S11255.  Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SLC44A4 MUTATED 6 4 0
SLC44A4 WILD-TYPE 115 104 72
'SLC44A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 0.65

Table S11256.  Gene #1138: 'SLC44A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SLC44A4 MUTATED 5 2 0 1 2
SLC44A4 WILD-TYPE 83 64 45 54 45
'PPL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00119 (Fisher's exact test), Q value = 0.017

Table S11257.  Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PPL MUTATED 2 13 3 0
PPL WILD-TYPE 202 124 44 3

Figure S4003.  Get High-res Image Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PPL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 0.17

Table S11258.  Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PPL MUTATED 0 9 3 2 2
PPL WILD-TYPE 39 87 41 86 78
'PPL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S11259.  Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PPL MUTATED 3 6 4 0 3
PPL WILD-TYPE 23 73 69 82 55

Figure S4004.  Get High-res Image Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'PPL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S11260.  Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PPL MUTATED 3 10 3 0
PPL WILD-TYPE 124 41 68 69

Figure S4005.  Get High-res Image Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.013

Table S11261.  Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PPL MUTATED 0 1 10 3 4
PPL WILD-TYPE 84 84 75 66 43

Figure S4006.  Get High-res Image Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PPL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0439 (Fisher's exact test), Q value = 0.13

Table S11262.  Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PPL MUTATED 6 1 3 8
PPL WILD-TYPE 89 73 118 72

Figure S4007.  Get High-res Image Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00095 (Fisher's exact test), Q value = 0.015

Table S11263.  Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PPL MUTATED 4 9 3 1 1 0
PPL WILD-TYPE 48 55 69 103 39 59

Figure S4008.  Get High-res Image Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'PPL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0176 (Fisher's exact test), Q value = 0.078

Table S11264.  Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PPL MUTATED 16 1 1
PPL WILD-TYPE 201 74 98

Figure S4009.  Get High-res Image Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'PPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S11265.  Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PPL MUTATED 5 0 10
PPL WILD-TYPE 116 108 62

Figure S4010.  Get High-res Image Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'PPL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 4e-05 (Fisher's exact test), Q value = 0.0023

Table S11266.  Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PPL MUTATED 2 0 8 0 5
PPL WILD-TYPE 86 66 37 55 42

Figure S4011.  Get High-res Image Gene #1139: 'PPL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TMEM63A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00164 (Fisher's exact test), Q value = 0.021

Table S11267.  Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMEM63A MUTATED 1 11 1 0
TMEM63A WILD-TYPE 203 126 46 3

Figure S4012.  Get High-res Image Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TMEM63A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 0.17

Table S11268.  Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TMEM63A MUTATED 1 6 2 0 1
TMEM63A WILD-TYPE 38 90 42 88 79
'TMEM63A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S11269.  Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMEM63A MUTATED 0 7 2 1 2
TMEM63A WILD-TYPE 26 72 71 81 56
'TMEM63A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00669 (Fisher's exact test), Q value = 0.045

Table S11270.  Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMEM63A MUTATED 1 5 5 1
TMEM63A WILD-TYPE 126 46 66 68

Figure S4013.  Get High-res Image Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TMEM63A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0395 (Fisher's exact test), Q value = 0.13

Table S11271.  Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMEM63A MUTATED 1 3 7 0 1
TMEM63A WILD-TYPE 83 82 78 69 46

Figure S4014.  Get High-res Image Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMEM63A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.162 (Fisher's exact test), Q value = 0.29

Table S11272.  Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMEM63A MUTATED 2 2 2 6
TMEM63A WILD-TYPE 93 72 119 74
'TMEM63A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0183 (Fisher's exact test), Q value = 0.079

Table S11273.  Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMEM63A MUTATED 3 6 0 3 1 0
TMEM63A WILD-TYPE 49 58 72 101 39 59

Figure S4015.  Get High-res Image Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TMEM63A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.044 (Fisher's exact test), Q value = 0.13

Table S11274.  Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMEM63A MUTATED 11 2 0
TMEM63A WILD-TYPE 206 73 99

Figure S4016.  Get High-res Image Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TMEM63A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11275.  Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TMEM63A MUTATED 4 4 2
TMEM63A WILD-TYPE 117 104 70
'TMEM63A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 0.45

Table S11276.  Gene #1140: 'TMEM63A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TMEM63A MUTATED 5 1 2 0 2
TMEM63A WILD-TYPE 83 65 43 55 45
'ANKRD42 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0224 (Fisher's exact test), Q value = 0.09

Table S11277.  Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ANKRD42 MUTATED 1 7 0 0
ANKRD42 WILD-TYPE 203 130 47 3

Figure S4017.  Get High-res Image Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ANKRD42 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.135 (Fisher's exact test), Q value = 0.26

Table S11278.  Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ANKRD42 MUTATED 1 3 1 0 0
ANKRD42 WILD-TYPE 38 93 43 88 80
'ANKRD42 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.78 (Fisher's exact test), Q value = 0.84

Table S11279.  Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ANKRD42 MUTATED 0 2 3 1 1
ANKRD42 WILD-TYPE 26 77 70 81 57
'ANKRD42 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00391 (Fisher's exact test), Q value = 0.034

Table S11280.  Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ANKRD42 MUTATED 1 5 0 1
ANKRD42 WILD-TYPE 126 46 71 68

Figure S4018.  Get High-res Image Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ANKRD42 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 0.63

Table S11281.  Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ANKRD42 MUTATED 0 2 3 1 1
ANKRD42 WILD-TYPE 84 83 82 68 46
'ANKRD42 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S11282.  Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ANKRD42 MUTATED 1 1 1 4
ANKRD42 WILD-TYPE 94 73 120 76
'ANKRD42 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00405 (Fisher's exact test), Q value = 0.034

Table S11283.  Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ANKRD42 MUTATED 5 2 0 1 0 0
ANKRD42 WILD-TYPE 47 62 72 103 40 59

Figure S4019.  Get High-res Image Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ANKRD42 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S11284.  Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ANKRD42 MUTATED 6 1 1
ANKRD42 WILD-TYPE 211 74 98
'ANKRD42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S11285.  Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ANKRD42 MUTATED 3 0 0
ANKRD42 WILD-TYPE 118 108 72
'ANKRD42 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S11286.  Gene #1141: 'ANKRD42 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ANKRD42 MUTATED 1 0 0 0 2
ANKRD42 WILD-TYPE 87 66 45 55 45
'AVPR1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00769 (Fisher's exact test), Q value = 0.049

Table S11287.  Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AVPR1A MUTATED 2 11 2 0
AVPR1A WILD-TYPE 202 126 45 3

Figure S4020.  Get High-res Image Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'AVPR1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 0.3

Table S11288.  Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
AVPR1A MUTATED 0 7 2 1 3
AVPR1A WILD-TYPE 39 89 42 87 77
'AVPR1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 0.47

Table S11289.  Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
AVPR1A MUTATED 2 4 3 1 4
AVPR1A WILD-TYPE 24 75 70 81 54
'AVPR1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0311 (Fisher's exact test), Q value = 0.11

Table S11290.  Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
AVPR1A MUTATED 3 6 4 1
AVPR1A WILD-TYPE 124 45 67 68

Figure S4021.  Get High-res Image Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'AVPR1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.385 (Fisher's exact test), Q value = 0.51

Table S11291.  Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AVPR1A MUTATED 3 1 6 2 2
AVPR1A WILD-TYPE 81 84 79 67 45
'AVPR1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0559 (Fisher's exact test), Q value = 0.15

Table S11292.  Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AVPR1A MUTATED 4 1 2 7
AVPR1A WILD-TYPE 91 73 119 73
'AVPR1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 0.44

Table S11293.  Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AVPR1A MUTATED 4 4 1 2 2 2
AVPR1A WILD-TYPE 48 60 71 102 38 57
'AVPR1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 0.34

Table S11294.  Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AVPR1A MUTATED 12 1 2
AVPR1A WILD-TYPE 205 74 97
'AVPR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 0.29

Table S11295.  Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
AVPR1A MUTATED 3 4 6
AVPR1A WILD-TYPE 118 104 66
'AVPR1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S11296.  Gene #1142: 'AVPR1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
AVPR1A MUTATED 4 1 3 1 4
AVPR1A WILD-TYPE 84 65 42 54 43
'VILL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0533 (Fisher's exact test), Q value = 0.15

Table S11297.  Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
VILL MUTATED 2 8 1 0
VILL WILD-TYPE 202 129 46 3
'VILL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S11298.  Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
VILL MUTATED 0 4 3 1 1
VILL WILD-TYPE 39 92 41 87 79
'VILL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S11299.  Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
VILL MUTATED 1 3 2 0 4
VILL WILD-TYPE 25 76 71 82 54
'VILL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 0.39

Table S11300.  Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
VILL MUTATED 3 4 2 1
VILL WILD-TYPE 124 47 69 68
'VILL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 0.25

Table S11301.  Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
VILL MUTATED 0 2 5 1 2
VILL WILD-TYPE 84 83 80 68 45
'VILL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 0.33

Table S11302.  Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
VILL MUTATED 4 1 1 4
VILL WILD-TYPE 91 73 120 76
'VILL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0356 (Fisher's exact test), Q value = 0.12

Table S11303.  Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
VILL MUTATED 2 6 1 1 0 1
VILL WILD-TYPE 50 58 71 103 40 58

Figure S4022.  Get High-res Image Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'VILL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.314 (Fisher's exact test), Q value = 0.44

Table S11304.  Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
VILL MUTATED 9 1 1
VILL WILD-TYPE 208 74 98
'VILL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 0.5

Table S11305.  Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
VILL MUTATED 3 2 4
VILL WILD-TYPE 118 106 68
'VILL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 0.45

Table S11306.  Gene #1143: 'VILL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
VILL MUTATED 5 1 2 0 1
VILL WILD-TYPE 83 65 43 55 46
'ARRDC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0611 (Fisher's exact test), Q value = 0.16

Table S11307.  Gene #1144: 'ARRDC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ARRDC5 MUTATED 0 4 0 0
ARRDC5 WILD-TYPE 204 133 47 3
'ARRDC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 0.46

Table S11308.  Gene #1144: 'ARRDC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ARRDC5 MUTATED 0 2 1 0 0
ARRDC5 WILD-TYPE 39 94 43 88 80
'ARRDC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.7

Table S11309.  Gene #1144: 'ARRDC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ARRDC5 MUTATED 0 1 2 0 1
ARRDC5 WILD-TYPE 26 78 71 82 57
'ARRDC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 0.4

Table S11310.  Gene #1144: 'ARRDC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ARRDC5 MUTATED 1 2 1 0
ARRDC5 WILD-TYPE 126 49 70 69
'ARRDC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S11311.  Gene #1144: 'ARRDC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ARRDC5 MUTATED 0 3 1 0 0
ARRDC5 WILD-TYPE 84 82 84 69 47
'ARRDC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S11312.  Gene #1144: 'ARRDC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ARRDC5 MUTATED 0 2 1 1
ARRDC5 WILD-TYPE 95 72 120 79
'ARRDC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 0.85

Table S11313.  Gene #1144: 'ARRDC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ARRDC5 MUTATED 1 1 0 2 0 0
ARRDC5 WILD-TYPE 51 63 72 102 40 59
'ARRDC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 0.35

Table S11314.  Gene #1144: 'ARRDC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ARRDC5 MUTATED 2 2 0
ARRDC5 WILD-TYPE 215 73 99
'ARRDC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11315.  Gene #1144: 'ARRDC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ARRDC5 MUTATED 1 1 1
ARRDC5 WILD-TYPE 120 107 71
'ARRDC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 0.37

Table S11316.  Gene #1144: 'ARRDC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ARRDC5 MUTATED 0 2 0 0 1
ARRDC5 WILD-TYPE 88 64 45 55 46
'P2RY12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0482 (Fisher's exact test), Q value = 0.14

Table S11317.  Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
P2RY12 MUTATED 1 6 2 0
P2RY12 WILD-TYPE 203 131 45 3

Figure S4023.  Get High-res Image Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'P2RY12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00626 (Fisher's exact test), Q value = 0.044

Table S11318.  Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
P2RY12 MUTATED 0 6 0 0 0
P2RY12 WILD-TYPE 39 90 44 88 80

Figure S4024.  Get High-res Image Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'P2RY12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.31

Table S11319.  Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
P2RY12 MUTATED 0 4 2 0 3
P2RY12 WILD-TYPE 26 75 71 82 55
'P2RY12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00185 (Fisher's exact test), Q value = 0.022

Table S11320.  Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
P2RY12 MUTATED 2 6 1 0
P2RY12 WILD-TYPE 125 45 70 69

Figure S4025.  Get High-res Image Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'P2RY12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00542 (Fisher's exact test), Q value = 0.04

Table S11321.  Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
P2RY12 MUTATED 0 0 6 1 1
P2RY12 WILD-TYPE 84 85 79 68 46

Figure S4026.  Get High-res Image Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'P2RY12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 0.58

Table S11322.  Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
P2RY12 MUTATED 2 0 3 3
P2RY12 WILD-TYPE 93 74 118 77
'P2RY12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0085 (Fisher's exact test), Q value = 0.052

Table S11323.  Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
P2RY12 MUTATED 1 5 3 0 0 0
P2RY12 WILD-TYPE 51 59 69 104 40 59

Figure S4027.  Get High-res Image Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'P2RY12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0282 (Fisher's exact test), Q value = 0.1

Table S11324.  Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
P2RY12 MUTATED 9 0 0
P2RY12 WILD-TYPE 208 75 99

Figure S4028.  Get High-res Image Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'P2RY12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0572 (Fisher's exact test), Q value = 0.16

Table S11325.  Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
P2RY12 MUTATED 1 1 4
P2RY12 WILD-TYPE 120 107 68
'P2RY12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0377 (Fisher's exact test), Q value = 0.12

Table S11326.  Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
P2RY12 MUTATED 1 0 3 0 2
P2RY12 WILD-TYPE 87 66 42 55 45

Figure S4029.  Get High-res Image Gene #1145: 'P2RY12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA1217 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0194 (Fisher's exact test), Q value = 0.082

Table S11327.  Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA1217 MUTATED 8 15 2 1
KIAA1217 WILD-TYPE 196 122 45 2

Figure S4030.  Get High-res Image Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KIAA1217 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0117 (Fisher's exact test), Q value = 0.062

Table S11328.  Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA1217 MUTATED 2 15 2 4 2
KIAA1217 WILD-TYPE 37 81 42 84 78

Figure S4031.  Get High-res Image Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KIAA1217 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0817 (Fisher's exact test), Q value = 0.19

Table S11329.  Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA1217 MUTATED 0 7 9 2 4
KIAA1217 WILD-TYPE 26 72 64 80 54
'KIAA1217 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00246 (Fisher's exact test), Q value = 0.026

Table S11330.  Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA1217 MUTATED 7 10 4 1
KIAA1217 WILD-TYPE 120 41 67 68

Figure S4032.  Get High-res Image Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA1217 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.005 (Fisher's exact test), Q value = 0.039

Table S11331.  Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA1217 MUTATED 4 1 13 3 3
KIAA1217 WILD-TYPE 80 84 72 66 44

Figure S4033.  Get High-res Image Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'KIAA1217 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0016 (Fisher's exact test), Q value = 0.02

Table S11332.  Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA1217 MUTATED 5 1 5 13
KIAA1217 WILD-TYPE 90 73 116 67

Figure S4034.  Get High-res Image Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.245 (Fisher's exact test), Q value = 0.38

Table S11333.  Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA1217 MUTATED 6 5 7 6 0 3
KIAA1217 WILD-TYPE 46 59 65 98 40 56
'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S11334.  Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA1217 MUTATED 19 3 5
KIAA1217 WILD-TYPE 198 72 94
'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0543 (Fisher's exact test), Q value = 0.15

Table S11335.  Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA1217 MUTATED 13 3 5
KIAA1217 WILD-TYPE 108 105 67
'KIAA1217 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.223 (Fisher's exact test), Q value = 0.35

Table S11336.  Gene #1146: 'KIAA1217 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA1217 MUTATED 6 2 3 3 7
KIAA1217 WILD-TYPE 82 64 42 52 40
'MEPCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00479 (Fisher's exact test), Q value = 0.038

Table S11337.  Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MEPCE MUTATED 0 7 1 0
MEPCE WILD-TYPE 204 130 46 3

Figure S4035.  Get High-res Image Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MEPCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0205 (Fisher's exact test), Q value = 0.085

Table S11338.  Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MEPCE MUTATED 0 5 2 0 0
MEPCE WILD-TYPE 39 91 42 88 80

Figure S4036.  Get High-res Image Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MEPCE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 0.27

Table S11339.  Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MEPCE MUTATED 0 1 4 0 2
MEPCE WILD-TYPE 26 78 69 82 56
'MEPCE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S11340.  Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MEPCE MUTATED 0 6 1 0
MEPCE WILD-TYPE 127 45 70 69

Figure S4037.  Get High-res Image Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'MEPCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00178 (Fisher's exact test), Q value = 0.022

Table S11341.  Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MEPCE MUTATED 0 0 6 0 2
MEPCE WILD-TYPE 84 85 79 69 45

Figure S4038.  Get High-res Image Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MEPCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 8e-05 (Fisher's exact test), Q value = 0.0034

Table S11342.  Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MEPCE MUTATED 1 0 0 7
MEPCE WILD-TYPE 94 74 121 73

Figure S4039.  Get High-res Image Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'MEPCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0295 (Fisher's exact test), Q value = 0.11

Table S11343.  Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MEPCE MUTATED 2 4 2 0 0 0
MEPCE WILD-TYPE 50 60 70 104 40 59

Figure S4040.  Get High-res Image Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MEPCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0327 (Fisher's exact test), Q value = 0.11

Table S11344.  Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MEPCE MUTATED 8 0 0
MEPCE WILD-TYPE 209 75 99

Figure S4041.  Get High-res Image Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0457 (Fisher's exact test), Q value = 0.14

Table S11345.  Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MEPCE MUTATED 3 0 4
MEPCE WILD-TYPE 118 108 68

Figure S4042.  Get High-res Image Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.088 (Fisher's exact test), Q value = 0.2

Table S11346.  Gene #1147: 'MEPCE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MEPCE MUTATED 2 0 2 0 3
MEPCE WILD-TYPE 86 66 43 55 44
'TRIM27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0699 (Fisher's exact test), Q value = 0.18

Table S11347.  Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TRIM27 MUTATED 0 4 1 0
TRIM27 WILD-TYPE 204 133 46 3
'TRIM27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.36

Table S11348.  Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TRIM27 MUTATED 1 2 1 0 0
TRIM27 WILD-TYPE 38 94 43 88 80
'TRIM27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 0.77

Table S11349.  Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TRIM27 MUTATED 0 2 1 0 1
TRIM27 WILD-TYPE 26 77 72 82 57
'TRIM27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.271 (Fisher's exact test), Q value = 0.4

Table S11350.  Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TRIM27 MUTATED 1 2 1 0
TRIM27 WILD-TYPE 126 49 70 69
'TRIM27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00783 (Fisher's exact test), Q value = 0.049

Table S11351.  Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TRIM27 MUTATED 0 0 2 0 3
TRIM27 WILD-TYPE 84 85 83 69 44

Figure S4043.  Get High-res Image Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRIM27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0974 (Fisher's exact test), Q value = 0.21

Table S11352.  Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TRIM27 MUTATED 1 1 0 3
TRIM27 WILD-TYPE 94 73 121 77
'TRIM27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 0.22

Table S11353.  Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TRIM27 MUTATED 1 3 1 0 0 0
TRIM27 WILD-TYPE 51 61 71 104 40 59
'TRIM27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.246 (Fisher's exact test), Q value = 0.38

Table S11354.  Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TRIM27 MUTATED 5 0 0
TRIM27 WILD-TYPE 212 75 99
'TRIM27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 0.16

Table S11355.  Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TRIM27 MUTATED 1 0 3
TRIM27 WILD-TYPE 120 108 69
'TRIM27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 0.37

Table S11356.  Gene #1148: 'TRIM27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TRIM27 MUTATED 1 0 1 0 2
TRIM27 WILD-TYPE 87 66 44 55 45
'PTPN12 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 0.26

Table S11357.  Gene #1149: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTPN12 MUTATED 3 8 1 0
PTPN12 WILD-TYPE 201 129 46 3
'PTPN12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.101 (Fisher's exact test), Q value = 0.22

Table S11358.  Gene #1149: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTPN12 MUTATED 3 5 0 1 1
PTPN12 WILD-TYPE 36 91 44 87 79
'PTPN12 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.763 (Fisher's exact test), Q value = 0.83

Table S11359.  Gene #1149: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTPN12 MUTATED 1 2 3 1 2
PTPN12 WILD-TYPE 25 77 70 81 56
'PTPN12 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 0.27

Table S11360.  Gene #1149: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTPN12 MUTATED 2 4 2 1
PTPN12 WILD-TYPE 125 47 69 68
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 0.63

Table S11361.  Gene #1149: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTPN12 MUTATED 2 1 5 2 1
PTPN12 WILD-TYPE 82 84 80 67 46
'PTPN12 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 0.5

Table S11362.  Gene #1149: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTPN12 MUTATED 2 1 3 5
PTPN12 WILD-TYPE 93 73 118 75
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 0.16

Table S11363.  Gene #1149: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTPN12 MUTATED 3 3 0 1 3 2
PTPN12 WILD-TYPE 49 61 72 103 37 57
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 0.8

Table S11364.  Gene #1149: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTPN12 MUTATED 7 3 2
PTPN12 WILD-TYPE 210 72 97
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.174 (Fisher's exact test), Q value = 0.3

Table S11365.  Gene #1149: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTPN12 MUTATED 5 1 4
PTPN12 WILD-TYPE 116 107 68
'PTPN12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 0.43

Table S11366.  Gene #1149: 'PTPN12 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTPN12 MUTATED 4 0 1 2 3
PTPN12 WILD-TYPE 84 66 44 53 44
'ITGAV MUTATION STATUS' versus 'CN_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 0.63

Table S11367.  Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ITGAV MUTATED 8 9 1 0
ITGAV WILD-TYPE 196 128 46 3
'ITGAV MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0575 (Fisher's exact test), Q value = 0.16

Table S11368.  Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ITGAV MUTATED 2 8 1 5 0
ITGAV WILD-TYPE 37 88 43 83 80
'ITGAV MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 0.48

Table S11369.  Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ITGAV MUTATED 3 2 2 4 3
ITGAV WILD-TYPE 23 77 71 78 55
'ITGAV MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S11370.  Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ITGAV MUTATED 5 4 2 3
ITGAV WILD-TYPE 122 47 69 66
'ITGAV MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 0.35

Table S11371.  Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ITGAV MUTATED 1 3 6 3 4
ITGAV WILD-TYPE 83 82 79 66 43
'ITGAV MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S11372.  Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ITGAV MUTATED 4 2 3 8
ITGAV WILD-TYPE 91 72 118 72
'ITGAV MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0325 (Fisher's exact test), Q value = 0.11

Table S11373.  Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ITGAV MUTATED 6 6 1 3 1 1
ITGAV WILD-TYPE 46 58 71 101 39 58

Figure S4044.  Get High-res Image Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ITGAV MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S11374.  Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ITGAV MUTATED 14 1 3
ITGAV WILD-TYPE 203 74 96
'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.51

Table S11375.  Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ITGAV MUTATED 8 3 3
ITGAV WILD-TYPE 113 105 69
'ITGAV MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00302 (Fisher's exact test), Q value = 0.029

Table S11376.  Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ITGAV MUTATED 2 1 2 1 8
ITGAV WILD-TYPE 86 65 43 54 39

Figure S4045.  Get High-res Image Gene #1150: 'ITGAV MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PATL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00382 (Fisher's exact test), Q value = 0.033

Table S11377.  Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PATL1 MUTATED 0 7 0 0
PATL1 WILD-TYPE 204 130 47 3

Figure S4046.  Get High-res Image Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PATL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 0.55

Table S11378.  Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PATL1 MUTATED 0 3 1 0 2
PATL1 WILD-TYPE 39 93 43 88 78
'PATL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.86

Table S11379.  Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PATL1 MUTATED 1 2 1 1 1
PATL1 WILD-TYPE 25 77 72 81 57
'PATL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S11380.  Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PATL1 MUTATED 2 3 0 1
PATL1 WILD-TYPE 125 48 71 68
'PATL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.519 (Fisher's exact test), Q value = 0.62

Table S11381.  Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PATL1 MUTATED 0 3 2 1 1
PATL1 WILD-TYPE 84 82 83 68 46
'PATL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 0.84

Table S11382.  Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PATL1 MUTATED 1 2 2 2
PATL1 WILD-TYPE 94 72 119 78
'PATL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.532 (Fisher's exact test), Q value = 0.64

Table S11383.  Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PATL1 MUTATED 2 2 1 1 1 0
PATL1 WILD-TYPE 50 62 71 103 39 59
'PATL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.874 (Fisher's exact test), Q value = 0.92

Table S11384.  Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PATL1 MUTATED 5 1 1
PATL1 WILD-TYPE 212 74 98
'PATL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.85 (Fisher's exact test), Q value = 0.9

Table S11385.  Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PATL1 MUTATED 3 1 1
PATL1 WILD-TYPE 118 107 71
'PATL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 0.66

Table S11386.  Gene #1151: 'PATL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PATL1 MUTATED 1 1 1 0 2
PATL1 WILD-TYPE 87 65 44 55 45
'KCNE1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.46 (Fisher's exact test), Q value = 0.57

Table S11387.  Gene #1152: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KCNE1 MUTATED 1 2 1 0
KCNE1 WILD-TYPE 203 135 46 3
'KCNE1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 0.73

Table S11388.  Gene #1152: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KCNE1 MUTATED 1 2 0 1 0
KCNE1 WILD-TYPE 38 94 44 87 80
'KCNE1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.608 (Fisher's exact test), Q value = 0.7

Table S11389.  Gene #1152: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KCNE1 MUTATED 0 1 2 0 1
KCNE1 WILD-TYPE 26 78 71 82 57
'KCNE1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S11390.  Gene #1152: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KCNE1 MUTATED 2 2 0 0
KCNE1 WILD-TYPE 125 49 71 69
'KCNE1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 0.36

Table S11391.  Gene #1152: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KCNE1 MUTATED 0 0 2 2 0
KCNE1 WILD-TYPE 84 85 83 67 47
'KCNE1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.148 (Fisher's exact test), Q value = 0.27

Table S11392.  Gene #1152: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KCNE1 MUTATED 2 0 0 2
KCNE1 WILD-TYPE 93 74 121 78
'KCNE1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S11393.  Gene #1152: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KCNE1 MUTATED 0 0 3 1 0 0
KCNE1 WILD-TYPE 52 64 69 103 40 59
'KCNE1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.394 (Fisher's exact test), Q value = 0.51

Table S11394.  Gene #1152: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KCNE1 MUTATED 4 0 0
KCNE1 WILD-TYPE 213 75 99
'KCNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 0.31

Table S11395.  Gene #1152: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KCNE1 MUTATED 3 0 0
KCNE1 WILD-TYPE 118 108 72
'KCNE1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.63

Table S11396.  Gene #1152: 'KCNE1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KCNE1 MUTATED 2 0 0 0 1
KCNE1 WILD-TYPE 86 66 45 55 46
'TLR4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 0.86

Table S11397.  Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TLR4 MUTATED 16 9 2 0
TLR4 WILD-TYPE 188 128 45 3
'TLR4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S11398.  Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TLR4 MUTATED 0 11 3 5 4
TLR4 WILD-TYPE 39 85 41 83 76
'TLR4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.361 (Fisher's exact test), Q value = 0.49

Table S11399.  Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TLR4 MUTATED 2 10 5 5 2
TLR4 WILD-TYPE 24 69 68 77 56
'TLR4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 0.35

Table S11400.  Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TLR4 MUTATED 9 5 8 2
TLR4 WILD-TYPE 118 46 63 67
'TLR4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.62

Table S11401.  Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TLR4 MUTATED 9 4 7 3 3
TLR4 WILD-TYPE 75 81 78 66 44
'TLR4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.321 (Fisher's exact test), Q value = 0.45

Table S11402.  Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TLR4 MUTATED 6 2 11 7
TLR4 WILD-TYPE 89 72 110 73
'TLR4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 0.43

Table S11403.  Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TLR4 MUTATED 3 4 4 4 5 7
TLR4 WILD-TYPE 49 60 68 100 35 52
'TLR4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0504 (Fisher's exact test), Q value = 0.14

Table S11404.  Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TLR4 MUTATED 16 1 10
TLR4 WILD-TYPE 201 74 89
'TLR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0268 (Fisher's exact test), Q value = 0.1

Table S11405.  Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TLR4 MUTATED 4 8 10
TLR4 WILD-TYPE 117 100 62

Figure S4047.  Get High-res Image Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TLR4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S11406.  Gene #1153: 'TLR4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TLR4 MUTATED 7 4 3 5 3
TLR4 WILD-TYPE 81 62 42 50 44
'XRCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00921 (Fisher's exact test), Q value = 0.054

Table S11407.  Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
XRCC2 MUTATED 0 6 0 0
XRCC2 WILD-TYPE 204 131 47 3

Figure S4048.  Get High-res Image Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'XRCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 0.31

Table S11408.  Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
XRCC2 MUTATED 0 3 0 0 0
XRCC2 WILD-TYPE 39 93 44 88 80
'XRCC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.276 (Fisher's exact test), Q value = 0.41

Table S11409.  Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
XRCC2 MUTATED 1 1 1 0 2
XRCC2 WILD-TYPE 25 78 72 82 56
'XRCC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00368 (Fisher's exact test), Q value = 0.033

Table S11410.  Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
XRCC2 MUTATED 1 4 0 0
XRCC2 WILD-TYPE 126 47 71 69

Figure S4049.  Get High-res Image Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'XRCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.624 (Fisher's exact test), Q value = 0.71

Table S11411.  Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
XRCC2 MUTATED 1 1 3 0 1
XRCC2 WILD-TYPE 83 84 82 69 46
'XRCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0174 (Fisher's exact test), Q value = 0.077

Table S11412.  Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
XRCC2 MUTATED 2 0 0 4
XRCC2 WILD-TYPE 93 74 121 76

Figure S4050.  Get High-res Image Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'XRCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 0.34

Table S11413.  Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
XRCC2 MUTATED 1 3 1 0 0 1
XRCC2 WILD-TYPE 51 61 71 104 40 58
'XRCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.542 (Fisher's exact test), Q value = 0.64

Table S11414.  Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
XRCC2 MUTATED 5 0 1
XRCC2 WILD-TYPE 212 75 98
'XRCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S11415.  Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
XRCC2 MUTATED 1 0 2
XRCC2 WILD-TYPE 120 108 70
'XRCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0438 (Fisher's exact test), Q value = 0.13

Table S11416.  Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
XRCC2 MUTATED 0 0 1 0 2
XRCC2 WILD-TYPE 88 66 44 55 45

Figure S4051.  Get High-res Image Gene #1154: 'XRCC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CRYBB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.289 (Fisher's exact test), Q value = 0.42

Table S11417.  Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CRYBB1 MUTATED 3 6 1 0
CRYBB1 WILD-TYPE 201 131 46 3
'CRYBB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 0.53

Table S11418.  Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CRYBB1 MUTATED 0 3 1 3 0
CRYBB1 WILD-TYPE 39 93 43 85 80
'CRYBB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 0.66

Table S11419.  Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CRYBB1 MUTATED 0 4 3 1 1
CRYBB1 WILD-TYPE 26 75 70 81 57
'CRYBB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00159 (Fisher's exact test), Q value = 0.02

Table S11420.  Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CRYBB1 MUTATED 0 5 3 1
CRYBB1 WILD-TYPE 127 46 68 68

Figure S4052.  Get High-res Image Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CRYBB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S11421.  Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CRYBB1 MUTATED 2 1 4 0 3
CRYBB1 WILD-TYPE 82 84 81 69 44
'CRYBB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 0.32

Table S11422.  Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CRYBB1 MUTATED 1 2 2 5
CRYBB1 WILD-TYPE 94 72 119 75
'CRYBB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.062

Table S11423.  Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CRYBB1 MUTATED 4 4 1 0 0 1
CRYBB1 WILD-TYPE 48 60 71 104 40 58

Figure S4053.  Get High-res Image Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CRYBB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 0.2

Table S11424.  Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CRYBB1 MUTATED 9 0 1
CRYBB1 WILD-TYPE 208 75 98
'CRYBB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0988 (Fisher's exact test), Q value = 0.21

Table S11425.  Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CRYBB1 MUTATED 5 0 1
CRYBB1 WILD-TYPE 116 108 71
'CRYBB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 0.24

Table S11426.  Gene #1155: 'CRYBB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CRYBB1 MUTATED 2 0 1 0 3
CRYBB1 WILD-TYPE 86 66 44 55 44
'MED23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0147 (Fisher's exact test), Q value = 0.07

Table S11427.  Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
MED23 MUTATED 4 13 1 0
MED23 WILD-TYPE 200 124 46 3

Figure S4054.  Get High-res Image Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MED23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 0.45

Table S11428.  Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
MED23 MUTATED 2 5 3 1 2
MED23 WILD-TYPE 37 91 41 87 78
'MED23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 0.52

Table S11429.  Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
MED23 MUTATED 2 7 2 3 4
MED23 WILD-TYPE 24 72 71 79 54
'MED23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S11430.  Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
MED23 MUTATED 4 5 5 4
MED23 WILD-TYPE 123 46 66 65
'MED23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0666 (Fisher's exact test), Q value = 0.17

Table S11431.  Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
MED23 MUTATED 1 1 7 4 3
MED23 WILD-TYPE 83 84 78 65 44
'MED23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 0.45

Table S11432.  Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
MED23 MUTATED 7 2 3 4
MED23 WILD-TYPE 88 72 118 76
'MED23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0071 (Fisher's exact test), Q value = 0.047

Table S11433.  Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
MED23 MUTATED 3 9 1 2 2 1
MED23 WILD-TYPE 49 55 71 102 38 58

Figure S4055.  Get High-res Image Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'MED23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S11434.  Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
MED23 MUTATED 14 2 2
MED23 WILD-TYPE 203 73 97
'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0439 (Fisher's exact test), Q value = 0.13

Table S11435.  Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
MED23 MUTATED 4 2 7
MED23 WILD-TYPE 117 106 65

Figure S4056.  Get High-res Image Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'MED23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0124 (Fisher's exact test), Q value = 0.064

Table S11436.  Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
MED23 MUTATED 7 0 4 0 2
MED23 WILD-TYPE 81 66 41 55 45

Figure S4057.  Get High-res Image Gene #1156: 'MED23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SFRS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.062 (Fisher's exact test), Q value = 0.16

Table S11437.  Gene #1157: 'SFRS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SFRS2 MUTATED 0 4 0 0
SFRS2 WILD-TYPE 204 133 47 3
'SFRS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S11438.  Gene #1157: 'SFRS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SFRS2 MUTATED 0 3 1 0 0
SFRS2 WILD-TYPE 39 93 43 88 80
'SFRS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.846 (Fisher's exact test), Q value = 0.89

Table S11439.  Gene #1157: 'SFRS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SFRS2 MUTATED 0 1 2 1 0
SFRS2 WILD-TYPE 26 78 71 81 58
'SFRS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 0.94

Table S11440.  Gene #1157: 'SFRS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SFRS2 MUTATED 1 1 1 1
SFRS2 WILD-TYPE 126 50 70 68
'SFRS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 0.51

Table S11441.  Gene #1157: 'SFRS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SFRS2 MUTATED 0 2 2 0 0
SFRS2 WILD-TYPE 84 83 83 69 47
'SFRS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 0.36

Table S11442.  Gene #1157: 'SFRS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SFRS2 MUTATED 1 2 0 1
SFRS2 WILD-TYPE 94 72 121 79
'SFRS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 0.68

Table S11443.  Gene #1157: 'SFRS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SFRS2 MUTATED 0 1 0 2 1 0
SFRS2 WILD-TYPE 52 63 72 102 39 59
'SFRS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 0.35

Table S11444.  Gene #1157: 'SFRS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SFRS2 MUTATED 2 2 0
SFRS2 WILD-TYPE 215 73 99
'SFRS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 0.3

Table S11445.  Gene #1157: 'SFRS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SFRS2 MUTATED 0 2 2
SFRS2 WILD-TYPE 121 106 70
'SFRS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 0.85

Table S11446.  Gene #1157: 'SFRS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SFRS2 MUTATED 2 1 1 0 0
SFRS2 WILD-TYPE 86 65 44 55 47
'SGK196 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00378 (Fisher's exact test), Q value = 0.033

Table S11447.  Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SGK196 MUTATED 0 7 0 0
SGK196 WILD-TYPE 204 130 47 3

Figure S4058.  Get High-res Image Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SGK196 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.358 (Fisher's exact test), Q value = 0.48

Table S11448.  Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SGK196 MUTATED 0 3 0 0 2
SGK196 WILD-TYPE 39 93 44 88 78
'SGK196 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 0.5

Table S11449.  Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SGK196 MUTATED 1 1 3 1 0
SGK196 WILD-TYPE 25 78 70 81 58
'SGK196 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0145 (Fisher's exact test), Q value = 0.07

Table S11450.  Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SGK196 MUTATED 1 4 0 1
SGK196 WILD-TYPE 126 47 71 68

Figure S4059.  Get High-res Image Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SGK196 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 0.76

Table S11451.  Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SGK196 MUTATED 0 2 2 1 1
SGK196 WILD-TYPE 84 83 83 68 46
'SGK196 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S11452.  Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SGK196 MUTATED 2 3 0 1
SGK196 WILD-TYPE 93 71 121 79
'SGK196 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.853 (Fisher's exact test), Q value = 0.9

Table S11453.  Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SGK196 MUTATED 1 2 1 2 1 0
SGK196 WILD-TYPE 51 62 71 102 39 59
'SGK196 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 0.42

Table S11454.  Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SGK196 MUTATED 5 2 0
SGK196 WILD-TYPE 212 73 99
'SGK196 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11455.  Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SGK196 MUTATED 2 2 1
SGK196 WILD-TYPE 119 106 71
'SGK196 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.142 (Fisher's exact test), Q value = 0.27

Table S11456.  Gene #1158: 'SGK196 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SGK196 MUTATED 0 2 1 0 2
SGK196 WILD-TYPE 88 64 44 55 45
'TDG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S11457.  Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TDG MUTATED 1 5 0 0
TDG WILD-TYPE 203 132 47 3
'TDG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 0.84

Table S11458.  Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TDG MUTATED 0 3 1 1 1
TDG WILD-TYPE 39 93 43 87 79
'TDG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00308 (Fisher's exact test), Q value = 0.03

Table S11459.  Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TDG MUTATED 2 0 4 0 0
TDG WILD-TYPE 24 79 69 82 58

Figure S4060.  Get High-res Image Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'TDG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0118 (Fisher's exact test), Q value = 0.062

Table S11460.  Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TDG MUTATED 2 4 0 0
TDG WILD-TYPE 125 47 71 69

Figure S4061.  Get High-res Image Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TDG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S11461.  Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TDG MUTATED 0 1 4 1 0
TDG WILD-TYPE 84 84 81 68 47
'TDG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11462.  Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TDG MUTATED 2 1 2 1
TDG WILD-TYPE 93 73 119 79
'TDG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 0.79

Table S11463.  Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TDG MUTATED 1 2 1 1 1 0
TDG WILD-TYPE 51 62 71 103 39 59
'TDG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S11464.  Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TDG MUTATED 4 1 1
TDG WILD-TYPE 213 74 98
'TDG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 0.46

Table S11465.  Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TDG MUTATED 2 1 3
TDG WILD-TYPE 119 107 69
'TDG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0235 (Fisher's exact test), Q value = 0.093

Table S11466.  Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TDG MUTATED 0 1 3 0 2
TDG WILD-TYPE 88 65 42 55 45

Figure S4062.  Get High-res Image Gene #1159: 'TDG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KIAA0408 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S11467.  Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
KIAA0408 MUTATED 4 9 1 0
KIAA0408 WILD-TYPE 200 128 46 3
'KIAA0408 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 0.33

Table S11468.  Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
KIAA0408 MUTATED 2 6 2 1 1
KIAA0408 WILD-TYPE 37 90 42 87 79
'KIAA0408 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 0.91

Table S11469.  Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
KIAA0408 MUTATED 1 4 4 2 2
KIAA0408 WILD-TYPE 25 75 69 80 56
'KIAA0408 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0246 (Fisher's exact test), Q value = 0.095

Table S11470.  Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
KIAA0408 MUTATED 2 6 2 3
KIAA0408 WILD-TYPE 125 45 69 66

Figure S4063.  Get High-res Image Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'KIAA0408 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 0.79

Table S11471.  Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
KIAA0408 MUTATED 3 3 5 1 2
KIAA0408 WILD-TYPE 81 82 80 68 45
'KIAA0408 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 0.63

Table S11472.  Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
KIAA0408 MUTATED 2 2 5 5
KIAA0408 WILD-TYPE 93 72 116 75
'KIAA0408 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 0.37

Table S11473.  Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
KIAA0408 MUTATED 4 1 2 5 2 0
KIAA0408 WILD-TYPE 48 63 70 99 38 59
'KIAA0408 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 0.91

Table S11474.  Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
KIAA0408 MUTATED 9 2 3
KIAA0408 WILD-TYPE 208 73 96
'KIAA0408 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11475.  Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
KIAA0408 MUTATED 5 4 2
KIAA0408 WILD-TYPE 116 104 70
'KIAA0408 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 0.63

Table S11476.  Gene #1160: 'KIAA0408 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
KIAA0408 MUTATED 5 1 1 1 3
KIAA0408 WILD-TYPE 83 65 44 54 44
'PIAS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0934 (Fisher's exact test), Q value = 0.21

Table S11477.  Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PIAS1 MUTATED 2 7 0 0
PIAS1 WILD-TYPE 202 130 47 3
'PIAS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 0.46

Table S11478.  Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PIAS1 MUTATED 0 5 0 1 2
PIAS1 WILD-TYPE 39 91 44 87 78
'PIAS1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0908 (Fisher's exact test), Q value = 0.2

Table S11479.  Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PIAS1 MUTATED 1 4 2 0 0
PIAS1 WILD-TYPE 25 75 71 82 58
'PIAS1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.016 (Fisher's exact test), Q value = 0.074

Table S11480.  Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PIAS1 MUTATED 1 4 2 0
PIAS1 WILD-TYPE 126 47 69 69

Figure S4064.  Get High-res Image Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PIAS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0105 (Fisher's exact test), Q value = 0.058

Table S11481.  Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PIAS1 MUTATED 1 0 6 0 1
PIAS1 WILD-TYPE 83 85 79 69 46

Figure S4065.  Get High-res Image Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PIAS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 0.3

Table S11482.  Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PIAS1 MUTATED 1 0 3 4
PIAS1 WILD-TYPE 94 74 118 76
'PIAS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0593 (Fisher's exact test), Q value = 0.16

Table S11483.  Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PIAS1 MUTATED 3 4 1 1 0 0
PIAS1 WILD-TYPE 49 60 71 103 40 59
'PIAS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.589 (Fisher's exact test), Q value = 0.68

Table S11484.  Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PIAS1 MUTATED 7 1 1
PIAS1 WILD-TYPE 210 74 98
'PIAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 0.41

Table S11485.  Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PIAS1 MUTATED 2 2 4
PIAS1 WILD-TYPE 119 106 68
'PIAS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0569 (Fisher's exact test), Q value = 0.16

Table S11486.  Gene #1161: 'PIAS1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PIAS1 MUTATED 1 0 3 1 3
PIAS1 WILD-TYPE 87 66 42 54 44
'FLJ10357 MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S11487.  Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FLJ10357 MUTATED 0 19 1 0
FLJ10357 WILD-TYPE 204 118 46 3

Figure S4066.  Get High-res Image Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FLJ10357 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00011 (Fisher's exact test), Q value = 0.0041

Table S11488.  Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FLJ10357 MUTATED 3 11 1 0 0
FLJ10357 WILD-TYPE 36 85 43 88 80

Figure S4067.  Get High-res Image Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FLJ10357 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 0.25

Table S11489.  Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FLJ10357 MUTATED 0 4 5 2 7
FLJ10357 WILD-TYPE 26 75 68 80 51
'FLJ10357 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00046 (Fisher's exact test), Q value = 0.01

Table S11490.  Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FLJ10357 MUTATED 3 10 3 2
FLJ10357 WILD-TYPE 124 41 68 67

Figure S4068.  Get High-res Image Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FLJ10357 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00079 (Fisher's exact test), Q value = 0.013

Table S11491.  Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FLJ10357 MUTATED 0 4 12 2 2
FLJ10357 WILD-TYPE 84 81 73 67 45

Figure S4069.  Get High-res Image Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FLJ10357 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S11492.  Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FLJ10357 MUTATED 3 4 0 13
FLJ10357 WILD-TYPE 92 70 121 67

Figure S4070.  Get High-res Image Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FLJ10357 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0415 (Fisher's exact test), Q value = 0.13

Table S11493.  Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FLJ10357 MUTATED 5 7 2 5 1 0
FLJ10357 WILD-TYPE 47 57 70 99 39 59

Figure S4071.  Get High-res Image Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'FLJ10357 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00413 (Fisher's exact test), Q value = 0.035

Table S11494.  Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FLJ10357 MUTATED 17 3 0
FLJ10357 WILD-TYPE 200 72 99

Figure S4072.  Get High-res Image Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'FLJ10357 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0512 (Fisher's exact test), Q value = 0.15

Table S11495.  Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FLJ10357 MUTATED 5 2 7
FLJ10357 WILD-TYPE 116 106 65
'FLJ10357 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 0.093

Table S11496.  Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FLJ10357 MUTATED 5 1 2 0 6
FLJ10357 WILD-TYPE 83 65 43 55 41

Figure S4073.  Get High-res Image Gene #1162: 'FLJ10357 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SMC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S11497.  Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SMC5 MUTATED 3 7 0 0
SMC5 WILD-TYPE 201 130 47 3
'SMC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 0.32

Table S11498.  Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SMC5 MUTATED 2 4 1 1 0
SMC5 WILD-TYPE 37 92 43 87 80
'SMC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S11499.  Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SMC5 MUTATED 0 4 2 1 3
SMC5 WILD-TYPE 26 75 71 81 55
'SMC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.256 (Fisher's exact test), Q value = 0.39

Table S11500.  Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SMC5 MUTATED 3 4 1 2
SMC5 WILD-TYPE 124 47 70 67
'SMC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 0.18

Table S11501.  Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SMC5 MUTATED 0 1 5 1 2
SMC5 WILD-TYPE 84 84 80 68 45
'SMC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.096

Table S11502.  Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SMC5 MUTATED 2 2 0 5
SMC5 WILD-TYPE 93 72 121 75

Figure S4074.  Get High-res Image Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'SMC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 0.22

Table S11503.  Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SMC5 MUTATED 4 3 1 2 0 0
SMC5 WILD-TYPE 48 61 71 102 40 59
'SMC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0886 (Fisher's exact test), Q value = 0.2

Table S11504.  Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SMC5 MUTATED 9 0 1
SMC5 WILD-TYPE 208 75 98
'SMC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 0.78

Table S11505.  Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SMC5 MUTATED 4 2 1
SMC5 WILD-TYPE 117 106 71
'SMC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.152 (Fisher's exact test), Q value = 0.28

Table S11506.  Gene #1163: 'SMC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SMC5 MUTATED 3 0 0 1 3
SMC5 WILD-TYPE 85 66 45 54 44
'ATOH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0095 (Fisher's exact test), Q value = 0.055

Table S11507.  Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ATOH1 MUTATED 0 6 0 0
ATOH1 WILD-TYPE 204 131 47 3

Figure S4075.  Get High-res Image Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ATOH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 0.4

Table S11508.  Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ATOH1 MUTATED 0 2 2 0 1
ATOH1 WILD-TYPE 39 94 42 88 79
'ATOH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0274 (Fisher's exact test), Q value = 0.1

Table S11509.  Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ATOH1 MUTATED 2 2 0 0 1
ATOH1 WILD-TYPE 24 77 73 82 57

Figure S4076.  Get High-res Image Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'ATOH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.366 (Fisher's exact test), Q value = 0.49

Table S11510.  Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ATOH1 MUTATED 2 2 1 0
ATOH1 WILD-TYPE 125 49 70 69
'ATOH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0791 (Fisher's exact test), Q value = 0.19

Table S11511.  Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ATOH1 MUTATED 0 0 3 1 2
ATOH1 WILD-TYPE 84 85 82 68 45
'ATOH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0648 (Fisher's exact test), Q value = 0.17

Table S11512.  Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ATOH1 MUTATED 1 0 1 4
ATOH1 WILD-TYPE 94 74 120 76
'ATOH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00549 (Fisher's exact test), Q value = 0.041

Table S11513.  Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ATOH1 MUTATED 2 4 0 0 0 0
ATOH1 WILD-TYPE 50 60 72 104 40 59

Figure S4077.  Get High-res Image Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ATOH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.144 (Fisher's exact test), Q value = 0.27

Table S11514.  Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ATOH1 MUTATED 6 0 0
ATOH1 WILD-TYPE 211 75 99
'ATOH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0864 (Fisher's exact test), Q value = 0.2

Table S11515.  Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ATOH1 MUTATED 2 0 3
ATOH1 WILD-TYPE 119 108 69
'ATOH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0541 (Fisher's exact test), Q value = 0.15

Table S11516.  Gene #1164: 'ATOH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ATOH1 MUTATED 1 0 3 0 1
ATOH1 WILD-TYPE 87 66 42 55 46
'AAMP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S11517.  Gene #1165: 'AAMP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
AAMP MUTATED 1 1 1 0
AAMP WILD-TYPE 203 136 46 3
'AAMP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.158 (Fisher's exact test), Q value = 0.29

Table S11518.  Gene #1165: 'AAMP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
AAMP MUTATED 0 0 2 0 1
AAMP WILD-TYPE 84 85 83 69 46
'AAMP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S11519.  Gene #1165: 'AAMP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
AAMP MUTATED 1 0 0 2
AAMP WILD-TYPE 94 74 121 78
'AAMP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.224 (Fisher's exact test), Q value = 0.35

Table S11520.  Gene #1165: 'AAMP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
AAMP MUTATED 0 2 1 0 0 0
AAMP WILD-TYPE 52 62 71 104 40 59
'AAMP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.588 (Fisher's exact test), Q value = 0.68

Table S11521.  Gene #1165: 'AAMP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
AAMP MUTATED 3 0 0
AAMP WILD-TYPE 214 75 99
'SYBU MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00792 (Fisher's exact test), Q value = 0.05

Table S11522.  Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SYBU MUTATED 2 11 1 0
SYBU WILD-TYPE 202 126 46 3

Figure S4078.  Get High-res Image Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SYBU MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 0.25

Table S11523.  Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SYBU MUTATED 2 8 1 1 2
SYBU WILD-TYPE 37 88 43 87 78
'SYBU MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.366 (Fisher's exact test), Q value = 0.49

Table S11524.  Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SYBU MUTATED 0 5 4 1 3
SYBU WILD-TYPE 26 74 69 81 55
'SYBU MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00045 (Fisher's exact test), Q value = 0.0099

Table S11525.  Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SYBU MUTATED 3 8 2 0
SYBU WILD-TYPE 124 43 69 69

Figure S4079.  Get High-res Image Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'SYBU MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0075

Table S11526.  Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SYBU MUTATED 0 2 11 1 1
SYBU WILD-TYPE 84 83 74 68 46

Figure S4080.  Get High-res Image Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SYBU MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 0.31

Table S11527.  Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SYBU MUTATED 3 2 3 7
SYBU WILD-TYPE 92 72 118 73
'SYBU MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0579 (Fisher's exact test), Q value = 0.16

Table S11528.  Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SYBU MUTATED 3 5 4 1 2 0
SYBU WILD-TYPE 49 59 68 103 38 59
'SYBU MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.46 (Fisher's exact test), Q value = 0.57

Table S11529.  Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SYBU MUTATED 11 2 2
SYBU WILD-TYPE 206 73 97
'SYBU MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 0.32

Table S11530.  Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SYBU MUTATED 4 3 6
SYBU WILD-TYPE 117 105 66
'SYBU MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.023 (Fisher's exact test), Q value = 0.091

Table S11531.  Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SYBU MUTATED 3 1 4 0 5
SYBU WILD-TYPE 85 65 41 55 42

Figure S4081.  Get High-res Image Gene #1166: 'SYBU MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CPT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00985 (Fisher's exact test), Q value = 0.056

Table S11532.  Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CPT2 MUTATED 0 6 0 0
CPT2 WILD-TYPE 204 131 47 3

Figure S4082.  Get High-res Image Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CPT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.443 (Fisher's exact test), Q value = 0.56

Table S11533.  Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CPT2 MUTATED 0 3 1 0 1
CPT2 WILD-TYPE 39 93 43 88 79
'CPT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00817 (Fisher's exact test), Q value = 0.05

Table S11534.  Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CPT2 MUTATED 2 0 2 0 0
CPT2 WILD-TYPE 24 79 71 82 58

Figure S4083.  Get High-res Image Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CPT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 0.32

Table S11535.  Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CPT2 MUTATED 2 2 0 0
CPT2 WILD-TYPE 125 49 71 69
'CPT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.166 (Fisher's exact test), Q value = 0.3

Table S11536.  Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CPT2 MUTATED 1 0 4 1 0
CPT2 WILD-TYPE 83 85 81 68 47
'CPT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.325 (Fisher's exact test), Q value = 0.45

Table S11537.  Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CPT2 MUTATED 3 0 1 2
CPT2 WILD-TYPE 92 74 120 78
'CPT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.372 (Fisher's exact test), Q value = 0.5

Table S11538.  Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CPT2 MUTATED 1 2 2 0 0 1
CPT2 WILD-TYPE 51 62 70 104 40 58
'CPT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.637 (Fisher's exact test), Q value = 0.72

Table S11539.  Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CPT2 MUTATED 4 0 2
CPT2 WILD-TYPE 213 75 97
'CPT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0136 (Fisher's exact test), Q value = 0.067

Table S11540.  Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CPT2 MUTATED 0 0 3
CPT2 WILD-TYPE 121 108 69

Figure S4084.  Get High-res Image Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CPT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 0.11

Table S11541.  Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CPT2 MUTATED 0 0 2 0 1
CPT2 WILD-TYPE 88 66 43 55 46

Figure S4085.  Get High-res Image Gene #1167: 'CPT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SCNN1D MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00217 (Fisher's exact test), Q value = 0.024

Table S11542.  Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SCNN1D MUTATED 0 8 2 0
SCNN1D WILD-TYPE 204 129 45 3

Figure S4086.  Get High-res Image Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'SCNN1D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S11543.  Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SCNN1D MUTATED 2 5 1 1 1
SCNN1D WILD-TYPE 37 91 43 87 79
'SCNN1D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 0.79

Table S11544.  Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SCNN1D MUTATED 1 2 3 1 1
SCNN1D WILD-TYPE 25 77 70 81 57
'SCNN1D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.958 (Fisher's exact test), Q value = 0.99

Table S11545.  Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SCNN1D MUTATED 4 1 2 1
SCNN1D WILD-TYPE 123 50 69 68
'SCNN1D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S11546.  Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SCNN1D MUTATED 0 1 3 2 2
SCNN1D WILD-TYPE 84 84 82 67 45
'SCNN1D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0651 (Fisher's exact test), Q value = 0.17

Table S11547.  Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SCNN1D MUTATED 2 2 0 4
SCNN1D WILD-TYPE 93 72 121 76
'SCNN1D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 0.53

Table S11548.  Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SCNN1D MUTATED 2 3 3 2 0 0
SCNN1D WILD-TYPE 50 61 69 102 40 59
'SCNN1D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.619 (Fisher's exact test), Q value = 0.71

Table S11549.  Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SCNN1D MUTATED 7 2 1
SCNN1D WILD-TYPE 210 73 98
'SCNN1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 0.51

Table S11550.  Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SCNN1D MUTATED 4 2 4
SCNN1D WILD-TYPE 117 106 68
'SCNN1D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S11551.  Gene #1168: 'SCNN1D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SCNN1D MUTATED 4 1 2 0 3
SCNN1D WILD-TYPE 84 65 43 55 44
'OLFM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 0.71

Table S11552.  Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OLFM3 MUTATED 3 4 1 0
OLFM3 WILD-TYPE 201 133 46 3
'OLFM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00946 (Fisher's exact test), Q value = 0.055

Table S11553.  Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OLFM3 MUTATED 0 7 0 0 1
OLFM3 WILD-TYPE 39 89 44 88 79

Figure S4087.  Get High-res Image Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OLFM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.211 (Fisher's exact test), Q value = 0.34

Table S11554.  Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OLFM3 MUTATED 0 2 4 0 1
OLFM3 WILD-TYPE 26 77 69 82 57
'OLFM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0457 (Fisher's exact test), Q value = 0.14

Table S11555.  Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OLFM3 MUTATED 2 4 1 0
OLFM3 WILD-TYPE 125 47 70 69

Figure S4088.  Get High-res Image Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OLFM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 0.14

Table S11556.  Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OLFM3 MUTATED 0 2 5 0 1
OLFM3 WILD-TYPE 84 83 80 69 46
'OLFM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 0.72

Table S11557.  Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OLFM3 MUTATED 1 2 2 3
OLFM3 WILD-TYPE 94 72 119 77
'OLFM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 0.52

Table S11558.  Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OLFM3 MUTATED 3 1 2 2 0 0
OLFM3 WILD-TYPE 49 63 70 102 40 59
'OLFM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 0.36

Table S11559.  Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OLFM3 MUTATED 6 2 0
OLFM3 WILD-TYPE 211 73 99
'OLFM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 0.69

Table S11560.  Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OLFM3 MUTATED 3 2 3
OLFM3 WILD-TYPE 118 106 69
'OLFM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 0.63

Table S11561.  Gene #1169: 'OLFM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OLFM3 MUTATED 3 1 2 0 2
OLFM3 WILD-TYPE 85 65 43 55 45
'LRRC43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0168 (Fisher's exact test), Q value = 0.076

Table S11562.  Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LRRC43 MUTATED 2 9 0 0
LRRC43 WILD-TYPE 202 128 47 3

Figure S4089.  Get High-res Image Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LRRC43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0938 (Fisher's exact test), Q value = 0.21

Table S11563.  Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LRRC43 MUTATED 0 7 1 1 1
LRRC43 WILD-TYPE 39 89 43 87 79
'LRRC43 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 0.82

Table S11564.  Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LRRC43 MUTATED 0 3 3 1 2
LRRC43 WILD-TYPE 26 76 70 81 56
'LRRC43 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0276 (Fisher's exact test), Q value = 0.1

Table S11565.  Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LRRC43 MUTATED 2 5 1 1
LRRC43 WILD-TYPE 125 46 70 68

Figure S4090.  Get High-res Image Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRRC43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0184 (Fisher's exact test), Q value = 0.08

Table S11566.  Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LRRC43 MUTATED 1 0 7 3 1
LRRC43 WILD-TYPE 83 85 78 66 46

Figure S4091.  Get High-res Image Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'LRRC43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 0.28

Table S11567.  Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LRRC43 MUTATED 4 2 1 5
LRRC43 WILD-TYPE 91 72 120 75
'LRRC43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 0.095

Table S11568.  Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LRRC43 MUTATED 5 4 1 1 0 1
LRRC43 WILD-TYPE 47 60 71 103 40 58

Figure S4092.  Get High-res Image Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'LRRC43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S11569.  Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LRRC43 MUTATED 10 0 2
LRRC43 WILD-TYPE 207 75 97
'LRRC43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.601 (Fisher's exact test), Q value = 0.69

Table S11570.  Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LRRC43 MUTATED 5 2 3
LRRC43 WILD-TYPE 116 106 69
'LRRC43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S11571.  Gene #1170: 'LRRC43 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LRRC43 MUTATED 2 0 2 2 4
LRRC43 WILD-TYPE 86 66 43 53 43
'TMC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 0.37

Table S11572.  Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TMC2 MUTATED 6 10 1 0
TMC2 WILD-TYPE 198 127 46 3
'TMC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 0.55

Table S11573.  Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TMC2 MUTATED 2 6 0 3 2
TMC2 WILD-TYPE 37 90 44 85 78
'TMC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 0.33

Table S11574.  Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TMC2 MUTATED 2 3 6 1 2
TMC2 WILD-TYPE 24 76 67 81 56
'TMC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00186 (Fisher's exact test), Q value = 0.022

Table S11575.  Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TMC2 MUTATED 4 8 1 1
TMC2 WILD-TYPE 123 43 70 68

Figure S4093.  Get High-res Image Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TMC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.32

Table S11576.  Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TMC2 MUTATED 2 1 7 3 2
TMC2 WILD-TYPE 82 84 78 66 45
'TMC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S11577.  Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TMC2 MUTATED 4 1 3 7
TMC2 WILD-TYPE 91 73 118 73
'TMC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 0.31

Table S11578.  Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TMC2 MUTATED 4 4 5 1 1 2
TMC2 WILD-TYPE 48 60 67 103 39 57
'TMC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.553 (Fisher's exact test), Q value = 0.65

Table S11579.  Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TMC2 MUTATED 12 2 3
TMC2 WILD-TYPE 205 73 96
'TMC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 0.33

Table S11580.  Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TMC2 MUTATED 8 2 2
TMC2 WILD-TYPE 113 106 70
'TMC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S11581.  Gene #1171: 'TMC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TMC2 MUTATED 5 1 1 1 4
TMC2 WILD-TYPE 83 65 44 54 43
'USP30 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0225 (Fisher's exact test), Q value = 0.09

Table S11582.  Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
USP30 MUTATED 1 7 0 0
USP30 WILD-TYPE 203 130 47 3

Figure S4094.  Get High-res Image Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'USP30 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0267 (Fisher's exact test), Q value = 0.1

Table S11583.  Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
USP30 MUTATED 0 6 0 0 1
USP30 WILD-TYPE 39 90 44 88 79

Figure S4095.  Get High-res Image Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'USP30 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 0.38

Table S11584.  Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
USP30 MUTATED 1 1 3 0 1
USP30 WILD-TYPE 25 78 70 82 57
'USP30 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 0.26

Table S11585.  Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
USP30 MUTATED 2 3 1 0
USP30 WILD-TYPE 125 48 70 69
'USP30 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 0.24

Table S11586.  Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
USP30 MUTATED 1 0 5 2 1
USP30 WILD-TYPE 83 85 80 67 46
'USP30 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.238 (Fisher's exact test), Q value = 0.37

Table S11587.  Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
USP30 MUTATED 4 0 2 3
USP30 WILD-TYPE 91 74 119 77
'USP30 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00602 (Fisher's exact test), Q value = 0.043

Table S11588.  Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
USP30 MUTATED 4 4 0 1 0 0
USP30 WILD-TYPE 48 60 72 103 40 59

Figure S4096.  Get High-res Image Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'USP30 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.17 (Fisher's exact test), Q value = 0.3

Table S11589.  Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
USP30 MUTATED 8 0 1
USP30 WILD-TYPE 209 75 98
'USP30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 0.6

Table S11590.  Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
USP30 MUTATED 4 1 2
USP30 WILD-TYPE 117 107 70
'USP30 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0892 (Fisher's exact test), Q value = 0.2

Table S11591.  Gene #1172: 'USP30 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
USP30 MUTATED 2 0 2 0 3
USP30 WILD-TYPE 86 66 43 55 44
'TRIP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 0.091

Table S11592.  Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TRIP6 MUTATED 1 7 0 0
TRIP6 WILD-TYPE 203 130 47 3

Figure S4097.  Get High-res Image Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TRIP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 0.79

Table S11593.  Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TRIP6 MUTATED 0 3 0 1 2
TRIP6 WILD-TYPE 39 93 44 87 78
'TRIP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 0.7

Table S11594.  Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TRIP6 MUTATED 0 3 2 1 0
TRIP6 WILD-TYPE 26 76 71 81 58
'TRIP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0303 (Fisher's exact test), Q value = 0.11

Table S11595.  Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TRIP6 MUTATED 0 3 2 1
TRIP6 WILD-TYPE 127 48 69 68

Figure S4098.  Get High-res Image Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TRIP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0149 (Fisher's exact test), Q value = 0.071

Table S11596.  Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TRIP6 MUTATED 0 0 5 1 2
TRIP6 WILD-TYPE 84 85 80 68 45

Figure S4099.  Get High-res Image Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TRIP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 0.71

Table S11597.  Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TRIP6 MUTATED 3 2 1 2
TRIP6 WILD-TYPE 92 72 120 78
'TRIP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S11598.  Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TRIP6 MUTATED 2 4 1 1 0 0
TRIP6 WILD-TYPE 50 60 71 103 40 59
'TRIP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 0.71

Table S11599.  Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TRIP6 MUTATED 6 1 1
TRIP6 WILD-TYPE 211 74 98
'TRIP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 0.74

Table S11600.  Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TRIP6 MUTATED 3 1 2
TRIP6 WILD-TYPE 118 107 70
'TRIP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0219 (Fisher's exact test), Q value = 0.089

Table S11601.  Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TRIP6 MUTATED 0 0 2 1 3
TRIP6 WILD-TYPE 88 66 43 54 44

Figure S4100.  Get High-res Image Gene #1173: 'TRIP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PBX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 0.42

Table S11602.  Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PBX2 MUTATED 3 6 1 0
PBX2 WILD-TYPE 201 131 46 3
'PBX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0475 (Fisher's exact test), Q value = 0.14

Table S11603.  Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PBX2 MUTATED 0 6 1 0 1
PBX2 WILD-TYPE 39 90 43 88 79

Figure S4101.  Get High-res Image Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PBX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 0.27

Table S11604.  Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PBX2 MUTATED 0 0 3 3 4
PBX2 WILD-TYPE 26 79 70 79 54
'PBX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.1 (Fisher's exact test), Q value = 0.22

Table S11605.  Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PBX2 MUTATED 4 4 0 2
PBX2 WILD-TYPE 123 47 71 67
'PBX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S11606.  Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PBX2 MUTATED 1 5 3 1 0
PBX2 WILD-TYPE 83 80 82 68 47
'PBX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.72

Table S11607.  Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PBX2 MUTATED 2 3 2 3
PBX2 WILD-TYPE 93 71 119 77
'PBX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0993 (Fisher's exact test), Q value = 0.22

Table S11608.  Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PBX2 MUTATED 1 5 2 1 1 0
PBX2 WILD-TYPE 51 59 70 103 39 59
'PBX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.75 (Fisher's exact test), Q value = 0.82

Table S11609.  Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PBX2 MUTATED 7 1 2
PBX2 WILD-TYPE 210 74 97
'PBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 0.22

Table S11610.  Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PBX2 MUTATED 1 2 4
PBX2 WILD-TYPE 120 106 68
'PBX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 0.73

Table S11611.  Gene #1174: 'PBX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PBX2 MUTATED 2 2 2 0 1
PBX2 WILD-TYPE 86 64 43 55 46
'TNNT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.194 (Fisher's exact test), Q value = 0.32

Table S11612.  Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TNNT3 MUTATED 2 5 0 0
TNNT3 WILD-TYPE 202 132 47 3
'TNNT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.9 (Fisher's exact test), Q value = 0.94

Table S11613.  Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TNNT3 MUTATED 0 3 1 2 1
TNNT3 WILD-TYPE 39 93 43 86 79
'TNNT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.226 (Fisher's exact test), Q value = 0.36

Table S11614.  Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TNNT3 MUTATED 1 1 2 0 0
TNNT3 WILD-TYPE 25 78 71 82 58
'TNNT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 0.88

Table S11615.  Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TNNT3 MUTATED 2 1 1 0
TNNT3 WILD-TYPE 125 50 70 69
'TNNT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.303 (Fisher's exact test), Q value = 0.43

Table S11616.  Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TNNT3 MUTATED 1 1 4 0 1
TNNT3 WILD-TYPE 83 84 81 69 46
'TNNT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 0.47

Table S11617.  Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TNNT3 MUTATED 1 0 3 3
TNNT3 WILD-TYPE 94 74 118 77
'TNNT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 0.09

Table S11618.  Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TNNT3 MUTATED 3 1 0 0 2 1
TNNT3 WILD-TYPE 49 63 72 104 38 58

Figure S4102.  Get High-res Image Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'TNNT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 0.62

Table S11619.  Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TNNT3 MUTATED 5 0 2
TNNT3 WILD-TYPE 212 75 97
'TNNT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 0.44

Table S11620.  Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TNNT3 MUTATED 5 1 1
TNNT3 WILD-TYPE 116 107 71
'TNNT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.281 (Fisher's exact test), Q value = 0.41

Table S11621.  Gene #1175: 'TNNT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TNNT3 MUTATED 2 0 1 1 3
TNNT3 WILD-TYPE 86 66 44 54 44
'OSTALPHA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0618 (Fisher's exact test), Q value = 0.16

Table S11622.  Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OSTALPHA MUTATED 0 4 0 0
OSTALPHA WILD-TYPE 204 133 47 3
'OSTALPHA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.36

Table S11623.  Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OSTALPHA MUTATED 1 2 1 0 0
OSTALPHA WILD-TYPE 38 94 43 88 80
'OSTALPHA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.775 (Fisher's exact test), Q value = 0.84

Table S11624.  Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OSTALPHA MUTATED 0 1 1 0 1
OSTALPHA WILD-TYPE 26 78 72 82 57
'OSTALPHA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.058 (Fisher's exact test), Q value = 0.16

Table S11625.  Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OSTALPHA MUTATED 0 2 1 0
OSTALPHA WILD-TYPE 127 49 70 69
'OSTALPHA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.251 (Fisher's exact test), Q value = 0.38

Table S11626.  Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OSTALPHA MUTATED 0 1 3 0 0
OSTALPHA WILD-TYPE 84 84 82 69 47
'OSTALPHA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00331 (Fisher's exact test), Q value = 0.031

Table S11627.  Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OSTALPHA MUTATED 0 0 0 4
OSTALPHA WILD-TYPE 95 74 121 76

Figure S4103.  Get High-res Image Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 0.11

Table S11628.  Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OSTALPHA MUTATED 3 0 0 1 0 0
OSTALPHA WILD-TYPE 49 64 72 103 40 59

Figure S4104.  Get High-res Image Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 0.87

Table S11629.  Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OSTALPHA MUTATED 3 0 1
OSTALPHA WILD-TYPE 214 75 98
'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.789 (Fisher's exact test), Q value = 0.85

Table S11630.  Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OSTALPHA MUTATED 2 1 0
OSTALPHA WILD-TYPE 119 107 72
'OSTALPHA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 0.63

Table S11631.  Gene #1176: 'OSTALPHA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OSTALPHA MUTATED 2 0 0 0 1
OSTALPHA WILD-TYPE 86 66 45 55 46
'OXCT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0164 (Fisher's exact test), Q value = 0.075

Table S11632.  Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
OXCT2 MUTATED 1 3 0 1
OXCT2 WILD-TYPE 203 134 47 2

Figure S4105.  Get High-res Image Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OXCT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 0.26

Table S11633.  Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
OXCT2 MUTATED 1 3 1 0 0
OXCT2 WILD-TYPE 38 93 43 88 80
'OXCT2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.447 (Fisher's exact test), Q value = 0.56

Table S11634.  Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
OXCT2 MUTATED 0 0 0 2 1
OXCT2 WILD-TYPE 26 79 73 80 57
'OXCT2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.015 (Fisher's exact test), Q value = 0.071

Table S11635.  Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
OXCT2 MUTATED 0 0 0 3
OXCT2 WILD-TYPE 127 51 71 66

Figure S4106.  Get High-res Image Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OXCT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.29 (Fisher's exact test), Q value = 0.42

Table S11636.  Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
OXCT2 MUTATED 0 1 3 0 1
OXCT2 WILD-TYPE 84 84 82 69 46
'OXCT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.155 (Fisher's exact test), Q value = 0.28

Table S11637.  Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
OXCT2 MUTATED 0 1 1 3
OXCT2 WILD-TYPE 95 73 120 77
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.38 (Fisher's exact test), Q value = 0.5

Table S11638.  Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
OXCT2 MUTATED 0 1 3 1 0 0
OXCT2 WILD-TYPE 52 63 69 103 40 59
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 0.38

Table S11639.  Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
OXCT2 MUTATED 5 0 0
OXCT2 WILD-TYPE 212 75 99
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.557 (Fisher's exact test), Q value = 0.66

Table S11640.  Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
OXCT2 MUTATED 1 1 2
OXCT2 WILD-TYPE 120 107 70
'OXCT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.833 (Fisher's exact test), Q value = 0.88

Table S11641.  Gene #1177: 'OXCT2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
OXCT2 MUTATED 2 1 0 0 1
OXCT2 WILD-TYPE 86 65 45 55 46
'XIRP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 0.2

Table S11642.  Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
XIRP2 MUTATED 24 28 4 0
XIRP2 WILD-TYPE 180 109 43 3
'XIRP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00504 (Fisher's exact test), Q value = 0.039

Table S11643.  Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
XIRP2 MUTATED 5 19 7 10 2
XIRP2 WILD-TYPE 34 77 37 78 78

Figure S4107.  Get High-res Image Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'XIRP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.058 (Fisher's exact test), Q value = 0.16

Table S11644.  Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
XIRP2 MUTATED 3 18 12 6 12
XIRP2 WILD-TYPE 23 61 61 76 46
'XIRP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00033 (Fisher's exact test), Q value = 0.0081

Table S11645.  Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
XIRP2 MUTATED 18 18 11 4
XIRP2 WILD-TYPE 109 33 60 65

Figure S4108.  Get High-res Image Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00096 (Fisher's exact test), Q value = 0.015

Table S11646.  Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
XIRP2 MUTATED 7 5 23 8 8
XIRP2 WILD-TYPE 77 80 62 61 39

Figure S4109.  Get High-res Image Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'XIRP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00654 (Fisher's exact test), Q value = 0.045

Table S11647.  Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
XIRP2 MUTATED 14 5 12 20
XIRP2 WILD-TYPE 81 69 109 60

Figure S4110.  Get High-res Image Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0296 (Fisher's exact test), Q value = 0.11

Table S11648.  Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
XIRP2 MUTATED 7 16 13 7 4 9
XIRP2 WILD-TYPE 45 48 59 97 36 50

Figure S4111.  Get High-res Image Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'XIRP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0422 (Fisher's exact test), Q value = 0.13

Table S11649.  Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
XIRP2 MUTATED 39 5 12
XIRP2 WILD-TYPE 178 70 87

Figure S4112.  Get High-res Image Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00077 (Fisher's exact test), Q value = 0.013

Table S11650.  Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
XIRP2 MUTATED 14 7 19
XIRP2 WILD-TYPE 107 101 53

Figure S4113.  Get High-res Image Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'XIRP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0408 (Fisher's exact test), Q value = 0.13

Table S11651.  Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
XIRP2 MUTATED 10 4 8 6 12
XIRP2 WILD-TYPE 78 62 37 49 35

Figure S4114.  Get High-res Image Gene #1178: 'XIRP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'CN_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S11652.  Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CREBBP MUTATED 6 25 4 0
CREBBP WILD-TYPE 198 112 43 3

Figure S4115.  Get High-res Image Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CREBBP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S11653.  Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CREBBP MUTATED 5 19 5 2 0
CREBBP WILD-TYPE 34 77 39 86 80

Figure S4116.  Get High-res Image Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CREBBP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 0.23

Table S11654.  Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CREBBP MUTATED 1 9 8 3 9
CREBBP WILD-TYPE 25 70 65 79 49
'CREBBP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S11655.  Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CREBBP MUTATED 8 11 7 4
CREBBP WILD-TYPE 119 40 64 65

Figure S4117.  Get High-res Image Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.016 (Fisher's exact test), Q value = 0.074

Table S11656.  Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CREBBP MUTATED 2 7 15 7 4
CREBBP WILD-TYPE 82 78 70 62 43

Figure S4118.  Get High-res Image Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CREBBP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1e-05 (Fisher's exact test), Q value = 0.00098

Table S11657.  Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CREBBP MUTATED 10 6 1 18
CREBBP WILD-TYPE 85 68 120 62

Figure S4119.  Get High-res Image Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00108 (Fisher's exact test), Q value = 0.016

Table S11658.  Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CREBBP MUTATED 10 9 5 3 7 2
CREBBP WILD-TYPE 42 55 67 101 33 57

Figure S4120.  Get High-res Image Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00183 (Fisher's exact test), Q value = 0.022

Table S11659.  Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CREBBP MUTATED 30 2 4
CREBBP WILD-TYPE 187 73 95

Figure S4121.  Get High-res Image Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00979 (Fisher's exact test), Q value = 0.056

Table S11660.  Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CREBBP MUTATED 10 3 11
CREBBP WILD-TYPE 111 105 61

Figure S4122.  Get High-res Image Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CREBBP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 5e-05 (Fisher's exact test), Q value = 0.0026

Table S11661.  Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CREBBP MUTATED 7 0 5 1 11
CREBBP WILD-TYPE 81 66 40 54 36

Figure S4123.  Get High-res Image Gene #1179: 'CREBBP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'TJP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.033 (Fisher's exact test), Q value = 0.11

Table S11662.  Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TJP2 MUTATED 3 10 1 0
TJP2 WILD-TYPE 201 127 46 3

Figure S4124.  Get High-res Image Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TJP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.019 (Fisher's exact test), Q value = 0.081

Table S11663.  Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TJP2 MUTATED 0 7 2 1 0
TJP2 WILD-TYPE 39 89 42 87 80

Figure S4125.  Get High-res Image Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TJP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S11664.  Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TJP2 MUTATED 0 4 1 1 5
TJP2 WILD-TYPE 26 75 72 81 53
'TJP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 0.13

Table S11665.  Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TJP2 MUTATED 2 5 3 1
TJP2 WILD-TYPE 125 46 68 68

Figure S4126.  Get High-res Image Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TJP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0116 (Fisher's exact test), Q value = 0.062

Table S11666.  Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TJP2 MUTATED 1 2 9 2 0
TJP2 WILD-TYPE 83 83 76 67 47

Figure S4127.  Get High-res Image Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TJP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.292 (Fisher's exact test), Q value = 0.42

Table S11667.  Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TJP2 MUTATED 5 2 2 5
TJP2 WILD-TYPE 90 72 119 75
'TJP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0529 (Fisher's exact test), Q value = 0.15

Table S11668.  Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TJP2 MUTATED 4 5 3 2 0 0
TJP2 WILD-TYPE 48 59 69 102 40 59
'TJP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0936 (Fisher's exact test), Q value = 0.21

Table S11669.  Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TJP2 MUTATED 12 1 1
TJP2 WILD-TYPE 205 74 98
'TJP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 0.42

Table S11670.  Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TJP2 MUTATED 5 1 3
TJP2 WILD-TYPE 116 107 69
'TJP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0108 (Fisher's exact test), Q value = 0.059

Table S11671.  Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TJP2 MUTATED 1 0 2 1 5
TJP2 WILD-TYPE 87 66 43 54 42

Figure S4128.  Get High-res Image Gene #1180: 'TJP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTPN11 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0219 (Fisher's exact test), Q value = 0.089

Table S11672.  Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
PTPN11 MUTATED 1 7 0 0
PTPN11 WILD-TYPE 203 130 47 3

Figure S4129.  Get High-res Image Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PTPN11 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 0.45

Table S11673.  Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
PTPN11 MUTATED 1 4 1 1 0
PTPN11 WILD-TYPE 38 92 43 87 80
'PTPN11 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 0.84

Table S11674.  Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
PTPN11 MUTATED 0 3 1 1 1
PTPN11 WILD-TYPE 26 76 72 81 57
'PTPN11 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0299 (Fisher's exact test), Q value = 0.11

Table S11675.  Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
PTPN11 MUTATED 0 3 2 1
PTPN11 WILD-TYPE 127 48 69 68

Figure S4130.  Get High-res Image Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTPN11 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S11676.  Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
PTPN11 MUTATED 1 1 4 0 0
PTPN11 WILD-TYPE 83 84 81 69 47
'PTPN11 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0927 (Fisher's exact test), Q value = 0.21

Table S11677.  Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
PTPN11 MUTATED 1 2 0 3
PTPN11 WILD-TYPE 94 72 121 77
'PTPN11 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 0.17

Table S11678.  Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
PTPN11 MUTATED 3 3 1 0 0 1
PTPN11 WILD-TYPE 49 61 71 104 40 58
'PTPN11 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 0.6

Table S11679.  Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
PTPN11 MUTATED 6 0 2
PTPN11 WILD-TYPE 211 75 97
'PTPN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 0.24

Table S11680.  Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
PTPN11 MUTATED 3 0 3
PTPN11 WILD-TYPE 118 108 69
'PTPN11 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.198 (Fisher's exact test), Q value = 0.33

Table S11681.  Gene #1181: 'PTPN11 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
PTPN11 MUTATED 2 0 2 0 2
PTPN11 WILD-TYPE 86 66 43 55 45
'ASCL4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.015 (Fisher's exact test), Q value = 0.071

Table S11682.  Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ASCL4 MUTATED 0 5 2 0
ASCL4 WILD-TYPE 204 132 45 3

Figure S4131.  Get High-res Image Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ASCL4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 0.23

Table S11683.  Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ASCL4 MUTATED 0 2 2 0 0
ASCL4 WILD-TYPE 39 94 42 88 80
'ASCL4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 0.47

Table S11684.  Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ASCL4 MUTATED 1 2 1 0 2
ASCL4 WILD-TYPE 25 77 72 82 56
'ASCL4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 0.42

Table S11685.  Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ASCL4 MUTATED 2 2 0 2
ASCL4 WILD-TYPE 125 49 71 67
'ASCL4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 0.48

Table S11686.  Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ASCL4 MUTATED 0 2 1 1 2
ASCL4 WILD-TYPE 84 83 84 68 45
'ASCL4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 0.36

Table S11687.  Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ASCL4 MUTATED 2 2 0 2
ASCL4 WILD-TYPE 93 72 121 78
'ASCL4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00015 (Fisher's exact test), Q value = 0.005

Table S11688.  Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ASCL4 MUTATED 0 6 0 0 1 0
ASCL4 WILD-TYPE 52 58 72 104 39 59

Figure S4132.  Get High-res Image Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'ASCL4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 0.51

Table S11689.  Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ASCL4 MUTATED 6 0 1
ASCL4 WILD-TYPE 211 75 98
'ASCL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 0.36

Table S11690.  Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ASCL4 MUTATED 2 0 2
ASCL4 WILD-TYPE 119 108 70
'ASCL4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 0.44

Table S11691.  Gene #1182: 'ASCL4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ASCL4 MUTATED 3 0 1 0 0
ASCL4 WILD-TYPE 85 66 44 55 47
'TESK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S11692.  Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
TESK1 MUTATED 0 11 1 0
TESK1 WILD-TYPE 204 126 46 3

Figure S4133.  Get High-res Image Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TESK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00028 (Fisher's exact test), Q value = 0.0075

Table S11693.  Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
TESK1 MUTATED 0 10 0 0 1
TESK1 WILD-TYPE 39 86 44 88 79

Figure S4134.  Get High-res Image Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TESK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 0.62

Table S11694.  Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
TESK1 MUTATED 0 3 4 1 1
TESK1 WILD-TYPE 26 76 69 81 57
'TESK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.044 (Fisher's exact test), Q value = 0.13

Table S11695.  Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
TESK1 MUTATED 1 4 3 1
TESK1 WILD-TYPE 126 47 68 68

Figure S4135.  Get High-res Image Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'TESK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.018 (Fisher's exact test), Q value = 0.079

Table S11696.  Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
TESK1 MUTATED 0 1 6 1 3
TESK1 WILD-TYPE 84 84 79 68 44

Figure S4136.  Get High-res Image Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TESK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 0.3

Table S11697.  Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
TESK1 MUTATED 3 2 1 5
TESK1 WILD-TYPE 92 72 120 75
'TESK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 0.26

Table S11698.  Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
TESK1 MUTATED 3 4 3 1 1 0
TESK1 WILD-TYPE 49 60 69 103 39 59
'TESK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0863 (Fisher's exact test), Q value = 0.2

Table S11699.  Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
TESK1 MUTATED 9 3 0
TESK1 WILD-TYPE 208 72 99
'TESK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00032 (Fisher's exact test), Q value = 0.0079

Table S11700.  Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
TESK1 MUTATED 1 1 8
TESK1 WILD-TYPE 120 107 64

Figure S4137.  Get High-res Image Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'TESK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0697 (Fisher's exact test), Q value = 0.17

Table S11701.  Gene #1183: 'TESK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
TESK1 MUTATED 2 1 3 0 4
TESK1 WILD-TYPE 86 65 42 55 43
'ORC2L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.772 (Fisher's exact test), Q value = 0.83

Table S11702.  Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
ORC2L MUTATED 3 3 1 0
ORC2L WILD-TYPE 201 134 46 3
'ORC2L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S11703.  Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
ORC2L MUTATED 0 4 0 1 0
ORC2L WILD-TYPE 39 92 44 87 80
'ORC2L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 0.45

Table S11704.  Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
ORC2L MUTATED 0 3 3 0 1
ORC2L WILD-TYPE 26 76 70 82 57
'ORC2L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0159 (Fisher's exact test), Q value = 0.073

Table S11705.  Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
ORC2L MUTATED 1 4 2 0
ORC2L WILD-TYPE 126 47 69 69

Figure S4138.  Get High-res Image Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'ORC2L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.22 (Fisher's exact test), Q value = 0.35

Table S11706.  Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
ORC2L MUTATED 1 0 4 1 1
ORC2L WILD-TYPE 83 85 81 68 46
'ORC2L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.64 (Fisher's exact test), Q value = 0.72

Table S11707.  Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
ORC2L MUTATED 3 1 1 2
ORC2L WILD-TYPE 92 73 120 78
'ORC2L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 0.28

Table S11708.  Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
ORC2L MUTATED 1 2 3 0 1 0
ORC2L WILD-TYPE 51 62 69 104 39 59
'ORC2L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0745 (Fisher's exact test), Q value = 0.18

Table S11709.  Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
ORC2L MUTATED 7 0 0
ORC2L WILD-TYPE 210 75 99
'ORC2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.212 (Fisher's exact test), Q value = 0.34

Table S11710.  Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
ORC2L MUTATED 3 0 2
ORC2L WILD-TYPE 118 108 70
'ORC2L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00668 (Fisher's exact test), Q value = 0.045

Table S11711.  Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
ORC2L MUTATED 1 0 0 0 4
ORC2L WILD-TYPE 87 66 45 55 43

Figure S4139.  Get High-res Image Gene #1184: 'ORC2L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'DHX15 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00691 (Fisher's exact test), Q value = 0.046

Table S11712.  Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
DHX15 MUTATED 1 9 1 0
DHX15 WILD-TYPE 203 128 46 3

Figure S4140.  Get High-res Image Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DHX15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 0.45

Table S11713.  Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
DHX15 MUTATED 1 5 0 1 1
DHX15 WILD-TYPE 38 91 44 87 79
'DHX15 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.048 (Fisher's exact test), Q value = 0.14

Table S11714.  Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
DHX15 MUTATED 0 2 3 0 5
DHX15 WILD-TYPE 26 77 70 82 53

Figure S4141.  Get High-res Image Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'DHX15 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00457 (Fisher's exact test), Q value = 0.036

Table S11715.  Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
DHX15 MUTATED 3 6 1 0
DHX15 WILD-TYPE 124 45 70 69

Figure S4142.  Get High-res Image Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'DHX15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 0.47

Table S11716.  Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
DHX15 MUTATED 1 1 5 2 2
DHX15 WILD-TYPE 83 84 80 67 45
'DHX15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 0.51

Table S11717.  Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
DHX15 MUTATED 4 1 2 4
DHX15 WILD-TYPE 91 73 119 76
'DHX15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 0.17

Table S11718.  Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
DHX15 MUTATED 3 5 1 1 0 1
DHX15 WILD-TYPE 49 59 71 103 40 58
'DHX15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.918 (Fisher's exact test), Q value = 0.95

Table S11719.  Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
DHX15 MUTATED 7 2 2
DHX15 WILD-TYPE 210 73 97
'DHX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 0.47

Table S11720.  Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
DHX15 MUTATED 4 1 3
DHX15 WILD-TYPE 117 107 69
'DHX15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.828 (Fisher's exact test), Q value = 0.88

Table S11721.  Gene #1185: 'DHX15 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
DHX15 MUTATED 2 1 2 1 2
DHX15 WILD-TYPE 86 65 43 54 45
'LRRC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 0.35

Table S11722.  Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
LRRC4 MUTATED 8 12 1 0
LRRC4 WILD-TYPE 196 125 46 3
'LRRC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 0.23

Table S11723.  Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
LRRC4 MUTATED 1 8 4 3 1
LRRC4 WILD-TYPE 38 88 40 85 79
'LRRC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 0.47

Table S11724.  Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
LRRC4 MUTATED 0 8 4 3 4
LRRC4 WILD-TYPE 26 71 69 79 54
'LRRC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0411 (Fisher's exact test), Q value = 0.13

Table S11725.  Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
LRRC4 MUTATED 5 8 3 3
LRRC4 WILD-TYPE 122 43 68 66

Figure S4143.  Get High-res Image Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'LRRC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 0.71

Table S11726.  Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
LRRC4 MUTATED 3 3 7 3 3
LRRC4 WILD-TYPE 81 82 78 66 44
'LRRC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.025 (Fisher's exact test), Q value = 0.096

Table S11727.  Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
LRRC4 MUTATED 3 2 4 10
LRRC4 WILD-TYPE 92 72 117 70

Figure S4144.  Get High-res Image Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'LRRC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.107 (Fisher's exact test), Q value = 0.23

Table S11728.  Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
LRRC4 MUTATED 3 6 7 4 0 1
LRRC4 WILD-TYPE 49 58 65 100 40 58
'LRRC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S11729.  Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
LRRC4 MUTATED 14 1 6
LRRC4 WILD-TYPE 203 74 93
'LRRC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.809 (Fisher's exact test), Q value = 0.86

Table S11730.  Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
LRRC4 MUTATED 6 4 2
LRRC4 WILD-TYPE 115 104 70
'LRRC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 0.43

Table S11731.  Gene #1186: 'LRRC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
LRRC4 MUTATED 5 1 0 3 3
LRRC4 WILD-TYPE 83 65 45 52 44
'FIGNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.049 (Fisher's exact test), Q value = 0.14

Table S11732.  Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FIGNL1 MUTATED 1 6 2 0
FIGNL1 WILD-TYPE 203 131 45 3

Figure S4145.  Get High-res Image Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FIGNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0206 (Fisher's exact test), Q value = 0.086

Table S11733.  Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FIGNL1 MUTATED 0 5 2 0 0
FIGNL1 WILD-TYPE 39 91 42 88 80

Figure S4146.  Get High-res Image Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FIGNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 0.27

Table S11734.  Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FIGNL1 MUTATED 0 4 0 1 3
FIGNL1 WILD-TYPE 26 75 73 81 55
'FIGNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00018 (Fisher's exact test), Q value = 0.0056

Table S11735.  Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FIGNL1 MUTATED 0 6 1 1
FIGNL1 WILD-TYPE 127 45 70 68

Figure S4147.  Get High-res Image Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00892 (Fisher's exact test), Q value = 0.053

Table S11736.  Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FIGNL1 MUTATED 0 2 6 0 0
FIGNL1 WILD-TYPE 84 83 79 69 47

Figure S4148.  Get High-res Image Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'FIGNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0129 (Fisher's exact test), Q value = 0.065

Table S11737.  Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FIGNL1 MUTATED 1 2 0 5
FIGNL1 WILD-TYPE 94 72 121 75

Figure S4149.  Get High-res Image Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 0.26

Table S11738.  Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FIGNL1 MUTATED 1 4 3 1 0 0
FIGNL1 WILD-TYPE 51 60 69 103 40 59
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0975 (Fisher's exact test), Q value = 0.21

Table S11739.  Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FIGNL1 MUTATED 8 1 0
FIGNL1 WILD-TYPE 209 74 99
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 0.55

Table S11740.  Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FIGNL1 MUTATED 3 1 3
FIGNL1 WILD-TYPE 118 107 69
'FIGNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0073 (Fisher's exact test), Q value = 0.048

Table S11741.  Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FIGNL1 MUTATED 0 1 2 0 4
FIGNL1 WILD-TYPE 88 65 43 55 43

Figure S4150.  Get High-res Image Gene #1187: 'FIGNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 0.22

Table S11742.  Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
CD6 MUTATED 2 5 3 0
CD6 WILD-TYPE 202 132 44 3
'CD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 0.58

Table S11743.  Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
CD6 MUTATED 2 4 1 1 1
CD6 WILD-TYPE 37 92 43 87 79
'CD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 0.63

Table S11744.  Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
CD6 MUTATED 1 2 4 1 1
CD6 WILD-TYPE 25 77 69 81 57
'CD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00201 (Fisher's exact test), Q value = 0.023

Table S11745.  Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
CD6 MUTATED 2 6 1 0
CD6 WILD-TYPE 125 45 70 69

Figure S4151.  Get High-res Image Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 0.78

Table S11746.  Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
CD6 MUTATED 1 3 3 1 2
CD6 WILD-TYPE 83 82 82 68 45
'CD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0398 (Fisher's exact test), Q value = 0.13

Table S11747.  Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
CD6 MUTATED 2 1 1 6
CD6 WILD-TYPE 93 73 120 74

Figure S4152.  Get High-res Image Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.318 (Fisher's exact test), Q value = 0.45

Table S11748.  Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
CD6 MUTATED 3 2 1 2 2 0
CD6 WILD-TYPE 49 62 71 102 38 59
'CD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0769 (Fisher's exact test), Q value = 0.19

Table S11749.  Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
CD6 MUTATED 9 1 0
CD6 WILD-TYPE 208 74 99
'CD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 0.6

Table S11750.  Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
CD6 MUTATED 4 1 2
CD6 WILD-TYPE 117 107 70
'CD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 0.2

Table S11751.  Gene #1188: 'CD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
CD6 MUTATED 2 0 2 0 3
CD6 WILD-TYPE 86 66 43 55 44
'POGZ MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00172 (Fisher's exact test), Q value = 0.021

Table S11752.  Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
POGZ MUTATED 4 16 4 0
POGZ WILD-TYPE 200 121 43 3

Figure S4153.  Get High-res Image Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'POGZ MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00016 (Fisher's exact test), Q value = 0.0052

Table S11753.  Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
POGZ MUTATED 2 15 3 2 0
POGZ WILD-TYPE 37 81 41 86 80

Figure S4154.  Get High-res Image Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POGZ MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 0.7

Table S11754.  Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
POGZ MUTATED 1 5 5 3 6
POGZ WILD-TYPE 25 74 68 79 52
'POGZ MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00014 (Fisher's exact test), Q value = 0.0048

Table S11755.  Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
POGZ MUTATED 5 11 1 3
POGZ WILD-TYPE 122 40 70 66

Figure S4155.  Get High-res Image Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'POGZ MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 0.12

Table S11756.  Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
POGZ MUTATED 2 4 11 2 4
POGZ WILD-TYPE 82 81 74 67 43

Figure S4156.  Get High-res Image Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'POGZ MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.031 (Fisher's exact test), Q value = 0.11

Table S11757.  Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
POGZ MUTATED 5 2 5 11
POGZ WILD-TYPE 90 72 116 69

Figure S4157.  Get High-res Image Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'POGZ MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0736 (Fisher's exact test), Q value = 0.18

Table S11758.  Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
POGZ MUTATED 7 7 3 3 2 2
POGZ WILD-TYPE 45 57 69 101 38 57
'POGZ MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 0.3

Table S11759.  Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
POGZ MUTATED 18 3 3
POGZ WILD-TYPE 199 72 96
'POGZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0302 (Fisher's exact test), Q value = 0.11

Table S11760.  Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
POGZ MUTATED 8 2 8
POGZ WILD-TYPE 113 106 64

Figure S4158.  Get High-res Image Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'POGZ MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00103 (Fisher's exact test), Q value = 0.016

Table S11761.  Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
POGZ MUTATED 2 1 4 2 9
POGZ WILD-TYPE 86 65 41 53 38

Figure S4159.  Get High-res Image Gene #1189: 'POGZ MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'RBM16 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0273 (Fisher's exact test), Q value = 0.1

Table S11762.  Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
RBM16 MUTATED 2 9 2 0
RBM16 WILD-TYPE 202 128 45 3

Figure S4160.  Get High-res Image Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RBM16 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 0.91

Table S11763.  Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
RBM16 MUTATED 1 5 1 2 2
RBM16 WILD-TYPE 38 91 43 86 78
'RBM16 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.252 (Fisher's exact test), Q value = 0.38

Table S11764.  Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
RBM16 MUTATED 1 4 3 0 2
RBM16 WILD-TYPE 25 75 70 82 56
'RBM16 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00019 (Fisher's exact test), Q value = 0.0058

Table S11765.  Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
RBM16 MUTATED 1 7 2 0
RBM16 WILD-TYPE 126 44 69 69

Figure S4161.  Get High-res Image Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'RBM16 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0767 (Fisher's exact test), Q value = 0.19

Table S11766.  Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
RBM16 MUTATED 1 2 7 3 0
RBM16 WILD-TYPE 83 83 78 66 47
'RBM16 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0414 (Fisher's exact test), Q value = 0.13

Table S11767.  Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
RBM16 MUTATED 6 1 1 5
RBM16 WILD-TYPE 89 73 120 75

Figure S4162.  Get High-res Image Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RBM16 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.327 (Fisher's exact test), Q value = 0.46

Table S11768.  Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
RBM16 MUTATED 3 4 3 1 1 1
RBM16 WILD-TYPE 49 60 69 103 39 58
'RBM16 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0209 (Fisher's exact test), Q value = 0.086

Table S11769.  Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
RBM16 MUTATED 12 0 1
RBM16 WILD-TYPE 205 75 98

Figure S4163.  Get High-res Image Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'RBM16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 0.8

Table S11770.  Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
RBM16 MUTATED 6 3 2
RBM16 WILD-TYPE 115 105 70
'RBM16 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0454 (Fisher's exact test), Q value = 0.14

Table S11771.  Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
RBM16 MUTATED 3 0 2 1 5
RBM16 WILD-TYPE 85 66 43 54 42

Figure S4164.  Get High-res Image Gene #1190: 'RBM16 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'SPOCK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 0.69

Table S11772.  Gene #1191: 'SPOCK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SPOCK1 MUTATED 5 6 2 0
SPOCK1 WILD-TYPE 199 131 45 3
'SPOCK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 0.28

Table S11773.  Gene #1191: 'SPOCK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SPOCK1 MUTATED 1 8 1 2 1
SPOCK1 WILD-TYPE 38 88 43 86 79
'SPOCK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 0.51

Table S11774.  Gene #1191: 'SPOCK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SPOCK1 MUTATED 0 5 4 1 2
SPOCK1 WILD-TYPE 26 74 69 81 56
'SPOCK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 0.23

Table S11775.  Gene #1191: 'SPOCK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SPOCK1 MUTATED 5 4 3 0
SPOCK1 WILD-TYPE 122 47 68 69
'SPOCK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 0.66

Table S11776.  Gene #1191: 'SPOCK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SPOCK1 MUTATED 1 3 5 3 1
SPOCK1 WILD-TYPE 83 82 80 66 46
'SPOCK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0809 (Fisher's exact test), Q value = 0.19

Table S11777.  Gene #1191: 'SPOCK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SPOCK1 MUTATED 3 3 1 6
SPOCK1 WILD-TYPE 92 71 120 74
'SPOCK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.784 (Fisher's exact test), Q value = 0.84

Table S11778.  Gene #1191: 'SPOCK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SPOCK1 MUTATED 3 2 2 2 2 2
SPOCK1 WILD-TYPE 49 62 70 102 38 57
'SPOCK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.799 (Fisher's exact test), Q value = 0.85

Table S11779.  Gene #1191: 'SPOCK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SPOCK1 MUTATED 8 3 2
SPOCK1 WILD-TYPE 209 72 97
'SPOCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 0.68

Table S11780.  Gene #1191: 'SPOCK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SPOCK1 MUTATED 6 3 4
SPOCK1 WILD-TYPE 115 105 68
'SPOCK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.254 (Fisher's exact test), Q value = 0.38

Table S11781.  Gene #1191: 'SPOCK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SPOCK1 MUTATED 3 1 2 2 5
SPOCK1 WILD-TYPE 85 65 43 53 42
'FAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.773 (Fisher's exact test), Q value = 0.84

Table S11782.  Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
FAH MUTATED 3 3 1 0
FAH WILD-TYPE 201 134 46 3
'FAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.779 (Fisher's exact test), Q value = 0.84

Table S11783.  Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
FAH MUTATED 1 1 1 1 1
FAH WILD-TYPE 38 95 43 87 79
'FAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 0.45

Table S11784.  Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
FAH MUTATED 0 3 3 0 1
FAH WILD-TYPE 26 76 70 82 57
'FAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00013 (Fisher's exact test), Q value = 0.0046

Table S11785.  Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
FAH MUTATED 1 6 0 0
FAH WILD-TYPE 126 45 71 69

Figure S4165.  Get High-res Image Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 0.69

Table S11786.  Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
FAH MUTATED 1 0 2 2 1
FAH WILD-TYPE 83 85 83 67 46
'FAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.676 (Fisher's exact test), Q value = 0.75

Table S11787.  Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
FAH MUTATED 3 1 1 1
FAH WILD-TYPE 92 73 120 79
'FAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 0.36

Table S11788.  Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
FAH MUTATED 1 3 1 0 1 1
FAH WILD-TYPE 51 61 71 104 39 58
'FAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 0.62

Table S11789.  Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
FAH MUTATED 5 0 2
FAH WILD-TYPE 212 75 97
'FAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S11790.  Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
FAH MUTATED 2 1 1
FAH WILD-TYPE 119 107 71
'FAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S11791.  Gene #1192: 'FAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
FAH MUTATED 0 0 1 1 2
FAH WILD-TYPE 88 66 44 54 45
'SERPINB8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0712 (Fisher's exact test), Q value = 0.18

Table S11792.  Gene #1193: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 204 137 47 3
SERPINB8 MUTATED 1 6 1 0
SERPINB8 WILD-TYPE 203 131 46 3
'SERPINB8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 0.67

Table S11793.  Gene #1193: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 39 96 44 88 80
SERPINB8 MUTATED 0 4 1 1 1
SERPINB8 WILD-TYPE 39 92 43 87 79
'SERPINB8 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0784 (Fisher's exact test), Q value = 0.19

Table S11794.  Gene #1193: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 26 79 73 82 58
SERPINB8 MUTATED 1 4 1 0 0
SERPINB8 WILD-TYPE 25 75 72 82 58
'SERPINB8 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 0.24

Table S11795.  Gene #1193: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 127 51 71 69
SERPINB8 MUTATED 1 2 3 0
SERPINB8 WILD-TYPE 126 49 68 69
'SERPINB8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0731 (Fisher's exact test), Q value = 0.18

Table S11796.  Gene #1193: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 84 85 85 69 47
SERPINB8 MUTATED 0 0 4 2 1
SERPINB8 WILD-TYPE 84 85 81 67 46
'SERPINB8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 0.23

Table S11797.  Gene #1193: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 95 74 121 80
SERPINB8 MUTATED 2 0 1 4
SERPINB8 WILD-TYPE 93 74 120 76
'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 0.62

Table S11798.  Gene #1193: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
ALL 52 64 72 104 40 59
SERPINB8 MUTATED 1 2 3 1 1 0
SERPINB8 WILD-TYPE 51 62 69 103 39 59
'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.71 (Fisher's exact test), Q value = 0.78

Table S11799.  Gene #1193: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 217 75 99
SERPINB8 MUTATED 5 2 1
SERPINB8 WILD-TYPE 212 73 98
'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 0.24

Table S11800.  Gene #1193: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 121 108 72
SERPINB8 MUTATED 3 0 3
SERPINB8 WILD-TYPE 118 108 69
'SERPINB8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.632 (Fisher's exact test), Q value = 0.72

Table S11801.  Gene #1193: 'SERPINB8 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
ALL 88 66 45 55 47
SERPINB8 MUTATED 2 1 2 0 1
SERPINB8 WILD-TYPE 86 65 43 55 46
Methods & Data
Input

  • Mutation data file = sample_sig_gene_table.txt from Mutsig_2CV pipeline

  • Processed Mutation data file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/STAD-TP/22815769/transformed.cor.cli.txt

  • Molecular subtypes file = /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/STAD-TP/22552605/STAD-TP.transferedmergedcluster.txt

  • Number of patients = 393

  • Number of significantly mutated genes = 1193

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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