name	nmut	n_coding	n_flank	n_coding_nonsilent	fracflank	callscheme	callscheme_name	N_tot	nsil_tot	nnon_tot	rate_sil	rate_non
TCGA-B7-5816-01A-21D-1600-08	1624	1572	52	1268	3.201970e-02	1	exome+100bp flanks	34834024	290	1211	8.325194e-06	3.476486e-05
TCGA-B7-5818-01A-11D-1600-08	441	415	26	327	5.895692e-02	1	exome+100bp flanks	34834024	86	306	2.468851e-06	8.784515e-06
TCGA-B7-A5TI-01A-11D-A31L-08	804	722	82	561	1.019900e-01	1	exome+100bp flanks	34834024	155	522	4.449673e-06	1.498535e-05
TCGA-B7-A5TJ-01A-11D-A31L-08	322	296	26	218	8.074534e-02	1	exome+100bp flanks	34834024	73	211	2.095652e-06	6.057296e-06
TCGA-B7-A5TK-01A-12D-A31L-08	69	65	4	46	5.797101e-02	1	exome+100bp flanks	34834024	18	44	5.167362e-07	1.263133e-06
TCGA-B7-A5TN-01A-21D-A31L-08	113	102	11	78	9.734513e-02	1	exome+100bp flanks	34834024	23	73	6.602740e-07	2.095652e-06
TCGA-BR-4183-01A-02D-1126-08	52	52	0	36	0	1	exome+100bp flanks	34834024	16	34	4.593210e-07	9.760572e-07
TCGA-BR-4184-01A-01D-1126-08	4968	4602	366	3460	7.367150e-02	1	exome+100bp flanks	34834024	1078	3230	3.094675e-05	9.272543e-05
TCGA-BR-4187-01A-01D-1126-08	40	34	6	25	1.500000e-01	1	exome+100bp flanks	34834024	9	24	2.583681e-07	6.889816e-07
TCGA-BR-4188-01A-01D-1126-08	90	84	6	66	6.666667e-02	1	exome+100bp flanks	34834024	17	64	4.880286e-07	1.837284e-06
TCGA-BR-4191-01A-02D-1126-08	238	222	16	178	6.722689e-02	1	exome+100bp flanks	34834024	42	167	1.205718e-06	4.794163e-06
TCGA-BR-4201-01A-01D-1126-08	1822	1745	77	1371	4.226125e-02	1	exome+100bp flanks	34834024	357	1301	1.024860e-05	3.734854e-05
TCGA-BR-4253-01A-01D-1126-08	111	106	5	78	4.504505e-02	1	exome+100bp flanks	34834024	23	75	6.602740e-07	2.153067e-06
TCGA-BR-4255-01A-01D-1126-08	77	70	7	49	9.090909e-02	1	exome+100bp flanks	34834024	21	46	6.028589e-07	1.320548e-06
TCGA-BR-4256-01A-01D-1126-08	1286	1237	49	951	3.810264e-02	1	exome+100bp flanks	34834024	272	888	7.808458e-06	2.549232e-05
TCGA-BR-4257-01A-01D-1126-08	1386	1321	65	971	4.689755e-02	1	exome+100bp flanks	34834024	331	921	9.502204e-06	2.643967e-05
TCGA-BR-4267-01A-01D-1126-08	114	109	5	82	4.385965e-02	1	exome+100bp flanks	34834024	25	75	7.176891e-07	2.153067e-06
TCGA-BR-4279-01A-01D-1126-08	68	62	6	38	8.823529e-02	1	exome+100bp flanks	34834024	23	37	6.602740e-07	1.062180e-06
TCGA-BR-4280-01A-01D-1126-08	865	814	51	650	5.895954e-02	1	exome+100bp flanks	34834024	156	610	4.478380e-06	1.751161e-05
TCGA-BR-4292-01A-01D-1126-08	1709	1608	101	1225	5.909889e-02	1	exome+100bp flanks	34834024	350	1150	1.004765e-05	3.301370e-05
TCGA-BR-4294-01A-01D-1126-08	38	34	4	27	1.052632e-01	1	exome+100bp flanks	34834024	7	27	2.009530e-07	7.751042e-07
TCGA-BR-4357-01A-01D-1158-08	274	249	25	196	9.124088e-02	1	exome+100bp flanks	34834024	48	182	1.377963e-06	5.224777e-06
TCGA-BR-4361-01A-01D-1158-08	3319	3002	317	2298	9.551070e-02	1	exome+100bp flanks	34834024	666	2155	1.911924e-05	6.186480e-05
TCGA-BR-4362-01A-01D-1158-08	1990	1803	187	1416	9.396985e-02	1	exome+100bp flanks	34834024	363	1331	1.042085e-05	3.820977e-05
TCGA-BR-4363-01A-01D-1158-08	745	668	77	532	1.033557e-01	1	exome+100bp flanks	34834024	131	496	3.760691e-06	1.423895e-05
TCGA-BR-4366-01A-01D-1158-08	165	149	16	112	9.696970e-02	1	exome+100bp flanks	34834024	37	109	1.062180e-06	3.129125e-06
TCGA-BR-4368-01A-01D-1158-08	1697	1544	153	1181	9.015910e-02	1	exome+100bp flanks	34834024	348	1126	9.990233e-06	3.232472e-05
TCGA-BR-4369-01A-01D-1158-08	208	191	17	145	8.173077e-02	1	exome+100bp flanks	34834024	44	138	1.263133e-06	3.961644e-06
TCGA-BR-4370-01A-01D-1158-08	1457	1298	159	1006	1.091283e-01	1	exome+100bp flanks	34834024	278	953	7.980703e-06	2.735831e-05
TCGA-BR-4371-01A-01D-1158-08	185	174	11	128	5.945946e-02	1	exome+100bp flanks	34834024	44	125	1.263133e-06	3.588446e-06
TCGA-BR-6452-01A-12D-1800-08	8511	8207	304	6353	3.571848e-02	1	exome+100bp flanks	34834024	1766	6019	5.069756e-05	1.727908e-04
TCGA-BR-6453-01A-11D-1800-08	217	211	6	162	2.764977e-02	0	coding only	34834024	46	151	1.320548e-06	4.334842e-06
TCGA-BR-6454-01A-11D-1800-08	163	160	3	122	1.840491e-02	0	coding only	34834024	34	116	9.760572e-07	3.330078e-06
TCGA-BR-6455-01A-11D-1800-08	116	108	8	76	6.896552e-02	1	exome+100bp flanks	34834024	31	70	8.899345e-07	2.009530e-06
TCGA-BR-6456-01A-11D-1800-08	50	49	1	35	2.000000e-02	1	exome+100bp flanks	34834024	14	33	4.019059e-07	9.473496e-07
TCGA-BR-6457-01A-21D-1800-08	132	128	4	94	3.030303e-02	1	exome+100bp flanks	34834024	33	87	9.473496e-07	2.497558e-06
TCGA-BR-6458-01A-11D-1800-08	339	326	13	255	3.834808e-02	1	exome+100bp flanks	34834024	67	238	1.923407e-06	6.832400e-06
TCGA-BR-6563-01A-13D-2053-08	93	89	4	69	4.301075e-02	1	exome+100bp flanks	34834024	18	68	5.167362e-07	1.952114e-06
TCGA-BR-6564-01A-12D-1882-08	41	37	4	29	9.756098e-02	1	exome+100bp flanks	34834024	8	27	2.296605e-07	7.751042e-07
TCGA-BR-6565-01A-11D-1800-08	166	158	8	128	4.819277e-02	1	exome+100bp flanks	34834024	26	121	7.463967e-07	3.473615e-06
TCGA-BR-6566-01A-11D-1800-08	1142	1080	62	832	5.429072e-02	1	exome+100bp flanks	34834024	242	785	6.947231e-06	2.253544e-05
TCGA-BR-6705-01A-12D-1882-08	120	113	7	88	5.833333e-02	1	exome+100bp flanks	34834024	23	83	6.602740e-07	2.382728e-06
TCGA-BR-6706-01A-11D-1882-08	232	226	6	182	2.586207e-02	0	coding only	34834024	41	175	1.177010e-06	5.023824e-06
TCGA-BR-6707-01A-11D-1882-08	80	75	5	60	6.250000e-02	1	exome+100bp flanks	34834024	15	60	4.306135e-07	1.722454e-06
TCGA-BR-6709-01A-11D-1882-08	45	44	1	36	2.222222e-02	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-BR-6710-01A-11D-1882-08	5	5	0	4	0	1	exome+100bp flanks	34834024	1	4	2.870756e-08	1.148303e-07
TCGA-BR-6801-01A-11D-1882-08	58	55	3	40	5.172414e-02	1	exome+100bp flanks	34834024	15	39	4.306135e-07	1.119595e-06
TCGA-BR-6802-01A-11D-1882-08	589	572	17	429	2.886248e-02	0	coding only	34834024	132	407	3.789399e-06	1.168398e-05
TCGA-BR-6803-01A-11D-1882-08	25	22	3	15	1.200000e-01	1	exome+100bp flanks	34834024	6	12	1.722454e-07	3.444908e-07
TCGA-BR-6852-01A-11D-1882-08	1428	1305	123	1023	8.613445e-02	1	exome+100bp flanks	34834024	269	967	7.722335e-06	2.776022e-05
TCGA-BR-7196-01A-11D-2053-08	85	79	6	61	7.058824e-02	1	exome+100bp flanks	34834024	18	57	5.167362e-07	1.636331e-06
TCGA-BR-7197-01A-11D-2201-08	250	225	25	175	1.000000e-01	1	exome+100bp flanks	34834024	45	162	1.291840e-06	4.650625e-06
TCGA-BR-7703-01A-11D-2053-08	944	849	95	663	1.006356e-01	1	exome+100bp flanks	34834024	176	631	5.052531e-06	1.811447e-05
TCGA-BR-7704-01A-11D-2053-08	412	395	17	313	4.126214e-02	1	exome+100bp flanks	34834024	80	295	2.296605e-06	8.468732e-06
TCGA-BR-7707-01A-11D-2053-08	1857	1734	123	1335	6.623586e-02	1	exome+100bp flanks	34834024	380	1261	1.090887e-05	3.620024e-05
TCGA-BR-7715-01A-11D-2053-08	169	158	11	125	6.508876e-02	1	exome+100bp flanks	34834024	32	120	9.186421e-07	3.444908e-06
TCGA-BR-7716-01A-21D-2053-08	204	197	7	156	3.431373e-02	1	exome+100bp flanks	34834024	39	148	1.119595e-06	4.248720e-06
TCGA-BR-7717-01A-11D-2053-08	173	166	7	116	4.046243e-02	1	exome+100bp flanks	34834024	49	110	1.406671e-06	3.157832e-06
TCGA-BR-7722-01A-31D-2201-08	59	54	5	41	8.474576e-02	1	exome+100bp flanks	34834024	13	39	3.731983e-07	1.119595e-06
TCGA-BR-7723-01A-11D-2053-08	207	185	22	136	1.062802e-01	1	exome+100bp flanks	34834024	44	123	1.263133e-06	3.531030e-06
TCGA-BR-7851-01A-11D-2201-08	1905	1782	123	1354	6.456693e-02	1	exome+100bp flanks	34834024	403	1287	1.156915e-05	3.694664e-05
TCGA-BR-7901-01A-11D-2201-08	225	211	14	151	6.222222e-02	1	exome+100bp flanks	34834024	58	146	1.665039e-06	4.191304e-06
TCGA-BR-7957-01A-11D-2201-08	66	64	2	54	3.030303e-02	1	exome+100bp flanks	34834024	9	47	2.583681e-07	1.349256e-06
TCGA-BR-7958-01A-21D-2340-08	212	190	22	154	1.037736e-01	1	exome+100bp flanks	34834024	36	144	1.033472e-06	4.133889e-06
TCGA-BR-7959-01A-11D-2340-08	118	113	5	93	4.237288e-02	1	exome+100bp flanks	34834024	20	86	5.741513e-07	2.468851e-06
TCGA-BR-8058-01A-31D-2340-08	67	64	3	52	4.477612e-02	1	exome+100bp flanks	34834024	12	49	3.444908e-07	1.406671e-06
TCGA-BR-8059-01A-11D-2340-08	949	885	64	696	6.743941e-02	1	exome+100bp flanks	34834024	180	665	5.167362e-06	1.909053e-05
TCGA-BR-8060-01A-11D-2340-08	241	237	4	173	1.659751e-02	0	coding only	34834024	62	164	1.779869e-06	4.708041e-06
TCGA-BR-8077-01A-11D-2340-08	164	152	12	116	7.317073e-02	1	exome+100bp flanks	34834024	35	113	1.004765e-06	3.243955e-06
TCGA-BR-8078-01A-11D-2340-08	2214	1925	289	1538	1.305330e-01	1	exome+100bp flanks	34834024	360	1453	1.033472e-05	4.171209e-05
TCGA-BR-8080-01A-11D-2340-08	219	208	11	165	5.022831e-02	1	exome+100bp flanks	34834024	40	159	1.148303e-06	4.564503e-06
TCGA-BR-8081-01A-11D-2340-08	1286	1173	113	889	8.786936e-02	1	exome+100bp flanks	34834024	267	846	7.664920e-06	2.428660e-05
TCGA-BR-8284-01A-11D-2340-08	470	439	31	338	6.595745e-02	1	exome+100bp flanks	34834024	98	324	2.813341e-06	9.301251e-06
TCGA-BR-8285-01A-11D-2340-08	112	107	5	84	4.464286e-02	1	exome+100bp flanks	34834024	20	82	5.741513e-07	2.354020e-06
TCGA-BR-8286-01A-12D-2340-08	176	167	9	116	5.113636e-02	1	exome+100bp flanks	34834024	49	110	1.406671e-06	3.157832e-06
TCGA-BR-8289-01A-11D-2340-08	249	238	11	193	4.417671e-02	1	exome+100bp flanks	34834024	43	180	1.234425e-06	5.167362e-06
TCGA-BR-8291-01A-11D-2340-08	44	38	6	33	1.363636e-01	1	exome+100bp flanks	34834024	5	32	1.435378e-07	9.186421e-07
TCGA-BR-8295-01A-11D-2340-08	89	80	9	59	1.011236e-01	1	exome+100bp flanks	34834024	21	56	6.028589e-07	1.607624e-06
TCGA-BR-8296-01A-11D-2340-08	130	123	7	88	5.384615e-02	1	exome+100bp flanks	34834024	31	83	8.899345e-07	2.382728e-06
TCGA-BR-8297-01A-12D-2340-08	284	268	16	209	5.633803e-02	1	exome+100bp flanks	34834024	55	196	1.578916e-06	5.626683e-06
TCGA-BR-8360-01A-11D-2340-08	1293	1146	147	871	1.136891e-01	1	exome+100bp flanks	34834024	258	819	7.406552e-06	2.351150e-05
TCGA-BR-8361-01A-11D-2340-08	1928	1834	94	1412	4.875519e-02	1	exome+100bp flanks	34834024	402	1336	1.154044e-05	3.835331e-05
TCGA-BR-8363-01A-11D-2340-08	1649	1494	155	1183	9.399636e-02	1	exome+100bp flanks	34834024	293	1122	8.411316e-06	3.220989e-05
TCGA-BR-8364-01A-11D-2340-08	30	26	4	23	1.333333e-01	1	exome+100bp flanks	34834024	3	21	8.612269e-08	6.028589e-07
TCGA-BR-8365-01A-21D-2340-08	47	43	4	34	8.510638e-02	1	exome+100bp flanks	34834024	8	32	2.296605e-07	9.186421e-07
TCGA-BR-8366-01A-11D-2340-08	237	220	17	180	7.172996e-02	1	exome+100bp flanks	34834024	38	171	1.090887e-06	4.908994e-06
TCGA-BR-8367-01A-11D-2340-08	94	88	6	69	6.382979e-02	1	exome+100bp flanks	34834024	18	64	5.167362e-07	1.837284e-06
TCGA-BR-8368-01A-11D-2340-08	1412	1252	160	944	1.133144e-01	1	exome+100bp flanks	34834024	294	892	8.440024e-06	2.560715e-05
TCGA-BR-8369-01A-11D-2340-08	248	236	12	188	4.838710e-02	1	exome+100bp flanks	34834024	47	175	1.349256e-06	5.023824e-06
TCGA-BR-8370-01A-11D-2340-08	168	149	19	106	1.130952e-01	1	exome+100bp flanks	34834024	40	102	1.148303e-06	2.928172e-06
TCGA-BR-8371-01A-11D-2340-08	51	46	5	33	9.803922e-02	1	exome+100bp flanks	34834024	13	31	3.731983e-07	8.899345e-07
TCGA-BR-8372-01A-11D-2340-08	1807	1604	203	1242	1.123409e-01	1	exome+100bp flanks	34834024	335	1160	9.617034e-06	3.330078e-05
TCGA-BR-8373-01A-11D-2340-08	120	112	8	76	6.666667e-02	1	exome+100bp flanks	34834024	33	71	9.473496e-07	2.038237e-06
TCGA-BR-8380-01A-11D-2340-08	99	96	3	78	3.030303e-02	1	exome+100bp flanks	34834024	18	75	5.167362e-07	2.153067e-06
TCGA-BR-8381-01A-11D-2394-08	156	145	11	103	7.051282e-02	1	exome+100bp flanks	34834024	42	100	1.205718e-06	2.870756e-06
TCGA-BR-8382-01A-11D-2394-08	1247	1146	101	888	8.099439e-02	1	exome+100bp flanks	34834024	242	842	6.947231e-06	2.417177e-05
TCGA-BR-8384-01A-21D-2394-08	60	58	2	47	3.333333e-02	1	exome+100bp flanks	34834024	11	47	3.157832e-07	1.349256e-06
TCGA-BR-8483-01A-31D-2394-08	163	144	19	111	1.165644e-01	1	exome+100bp flanks	34834024	30	107	8.612269e-07	3.071709e-06
TCGA-BR-8484-01A-11D-2394-08	122	110	12	70	9.836066e-02	1	exome+100bp flanks	34834024	36	64	1.033472e-06	1.837284e-06
TCGA-BR-8485-01A-11D-2394-08	389	364	25	285	6.426735e-02	1	exome+100bp flanks	34834024	75	274	2.153067e-06	7.865873e-06
TCGA-BR-8486-01A-31D-2394-08	71	70	1	57	1.408451e-02	1	exome+100bp flanks	34834024	13	55	3.731983e-07	1.578916e-06
TCGA-BR-8487-01A-11D-2394-08	3972	3591	381	2828	9.592145e-02	1	exome+100bp flanks	34834024	717	2657	2.058332e-05	7.627600e-05
TCGA-BR-8588-01A-11D-2394-08	152	139	13	105	8.552632e-02	1	exome+100bp flanks	34834024	31	100	8.899345e-07	2.870756e-06
TCGA-BR-8589-01A-11D-2394-08	1309	1226	83	1003	6.340718e-02	1	exome+100bp flanks	34834024	207	949	5.942466e-06	2.724348e-05
TCGA-BR-8590-01A-11D-2394-08	162	150	12	118	7.407407e-02	1	exome+100bp flanks	34834024	31	110	8.899345e-07	3.157832e-06
TCGA-BR-8591-01A-11D-2394-08	2030	1775	255	1387	1.256158e-01	1	exome+100bp flanks	34834024	365	1300	1.047826e-05	3.731983e-05
TCGA-BR-8592-01A-11D-2394-08	53	46	7	36	1.320755e-01	1	exome+100bp flanks	34834024	10	34	2.870756e-07	9.760572e-07
TCGA-BR-8676-01A-11D-2394-08	121	110	11	82	9.090909e-02	1	exome+100bp flanks	34834024	28	72	8.038118e-07	2.066945e-06
TCGA-BR-8677-01A-11D-2394-08	95	89	6	62	6.315789e-02	1	exome+100bp flanks	34834024	27	59	7.751042e-07	1.693746e-06
TCGA-BR-8678-01A-11D-2394-08	145	133	12	104	8.275862e-02	1	exome+100bp flanks	34834024	27	96	7.751042e-07	2.755926e-06
TCGA-BR-8679-01A-11D-2394-08	196	182	14	141	7.142857e-02	1	exome+100bp flanks	34834024	40	139	1.148303e-06	3.990352e-06
TCGA-BR-8680-01A-11D-2394-08	7311	6705	606	5345	8.288880e-02	1	exome+100bp flanks	34834024	1275	5012	3.660215e-05	1.438823e-04
TCGA-BR-8682-01A-11D-2394-08	100	92	8	63	8.000000e-02	1	exome+100bp flanks	34834024	29	61	8.325194e-07	1.751161e-06
TCGA-BR-8683-01A-11D-2394-08	191	169	22	131	1.151832e-01	1	exome+100bp flanks	34834024	35	125	1.004765e-06	3.588446e-06
TCGA-BR-8686-01A-11D-2394-08	153	142	11	101	7.189542e-02	1	exome+100bp flanks	34834024	40	96	1.148303e-06	2.755926e-06
TCGA-BR-8687-01A-11D-2394-08	230	213	17	162	7.391304e-02	1	exome+100bp flanks	34834024	48	155	1.377963e-06	4.449673e-06
TCGA-BR-8690-01A-11D-2394-08	181	173	8	129	4.419890e-02	1	exome+100bp flanks	34834024	44	126	1.263133e-06	3.617153e-06
TCGA-BR-A44T-01A-32D-A24D-08	26	25	1	17	3.846154e-02	1	exome+100bp flanks	34834024	7	14	2.009530e-07	4.019059e-07
TCGA-BR-A44U-01A-11D-A24D-08	136	121	15	89	1.102941e-01	1	exome+100bp flanks	34834024	29	86	8.325194e-07	2.468851e-06
TCGA-BR-A452-01A-91D-A25D-08	144	128	16	93	1.111111e-01	1	exome+100bp flanks	34834024	33	83	9.473496e-07	2.382728e-06
TCGA-BR-A453-01A-11D-A24D-08	88	85	3	64	3.409091e-02	1	exome+100bp flanks	34834024	18	63	5.167362e-07	1.808577e-06
TCGA-BR-A4CQ-01A-12D-A25D-08	216	200	16	160	7.407407e-02	1	exome+100bp flanks	34834024	38	149	1.090887e-06	4.277427e-06
TCGA-BR-A4CR-01A-11D-A24D-08	94	87	7	59	7.446809e-02	1	exome+100bp flanks	34834024	25	54	7.176891e-07	1.550208e-06
TCGA-BR-A4CS-01A-11D-A24D-08	195	183	12	137	6.153846e-02	1	exome+100bp flanks	34834024	44	127	1.263133e-06	3.645861e-06
TCGA-BR-A4IU-01A-22D-A25D-08	47	43	4	36	8.510638e-02	1	exome+100bp flanks	34834024	6	35	1.722454e-07	1.004765e-06
TCGA-BR-A4IV-01A-31D-A25D-08	37	33	4	26	1.081081e-01	1	exome+100bp flanks	34834024	7	24	2.009530e-07	6.889816e-07
TCGA-BR-A4IY-01A-11D-A25D-08	175	159	16	123	9.142857e-02	1	exome+100bp flanks	34834024	35	120	1.004765e-06	3.444908e-06
TCGA-BR-A4IZ-01A-32D-A25D-08	25	22	3	19	1.200000e-01	1	exome+100bp flanks	34834024	3	18	8.612269e-08	5.167362e-07
TCGA-BR-A4J1-01A-11D-A25D-08	91	82	9	62	9.890110e-02	1	exome+100bp flanks	34834024	19	58	5.454437e-07	1.665039e-06
TCGA-BR-A4J2-01A-21D-A25D-08	83	80	3	61	3.614458e-02	1	exome+100bp flanks	34834024	18	60	5.167362e-07	1.722454e-06
TCGA-BR-A4J4-01A-12D-A25D-08	98	95	3	77	3.061224e-02	1	exome+100bp flanks	34834024	18	73	5.167362e-07	2.095652e-06
TCGA-BR-A4J5-01A-21D-A25D-08	106	101	5	77	4.716981e-02	1	exome+100bp flanks	34834024	24	73	6.889816e-07	2.095652e-06
TCGA-BR-A4J6-01A-11D-A25D-08	45	38	7	29	1.555556e-01	1	exome+100bp flanks	34834024	9	28	2.583681e-07	8.038118e-07
TCGA-BR-A4J7-01A-31D-A25D-08	78	68	10	51	1.282051e-01	1	exome+100bp flanks	34834024	16	47	4.593210e-07	1.349256e-06
TCGA-BR-A4J8-01A-11D-A25D-08	120	111	9	74	7.500000e-02	1	exome+100bp flanks	34834024	36	69	1.033472e-06	1.980822e-06
TCGA-BR-A4PD-01A-11D-A25D-08	183	170	13	135	7.103825e-02	1	exome+100bp flanks	34834024	30	125	8.612269e-07	3.588446e-06
TCGA-BR-A4PE-01A-31D-A25D-08	286	257	29	199	1.013986e-01	1	exome+100bp flanks	34834024	55	188	1.578916e-06	5.397022e-06
TCGA-BR-A4PF-01A-11D-A25D-08	136	126	10	104	7.352941e-02	1	exome+100bp flanks	34834024	22	99	6.315664e-07	2.842049e-06
TCGA-BR-A4QI-01A-12D-A25D-08	159	146	13	109	8.176101e-02	1	exome+100bp flanks	34834024	35	103	1.004765e-06	2.956879e-06
TCGA-BR-A4QL-01A-31D-A25D-08	2379	2156	223	1668	9.373686e-02	1	exome+100bp flanks	34834024	460	1576	1.320548e-05	4.524312e-05
TCGA-BR-A4QM-01A-12D-A25D-08	138	128	10	88	7.246377e-02	1	exome+100bp flanks	34834024	37	83	1.062180e-06	2.382728e-06
TCGA-CD-5798-01A-11D-1600-08	113	107	6	81	5.309735e-02	1	exome+100bp flanks	34834024	24	77	6.889816e-07	2.210482e-06
TCGA-CD-5799-01A-11D-1600-08	49	43	6	31	1.224490e-01	1	exome+100bp flanks	34834024	12	30	3.444908e-07	8.612269e-07
TCGA-CD-5800-01A-11D-1600-08	200	193	7	148	3.500000e-02	1	exome+100bp flanks	34834024	43	141	1.234425e-06	4.047767e-06
TCGA-CD-5801-01A-11D-1600-08	434	414	20	326	4.608295e-02	1	exome+100bp flanks	34834024	82	307	2.354020e-06	8.813222e-06
TCGA-CD-5802-01A-11D-1600-08	64	61	3	48	4.687500e-02	1	exome+100bp flanks	34834024	13	45	3.731983e-07	1.291840e-06
TCGA-CD-5803-01A-11D-1600-08	44	42	2	33	4.545455e-02	1	exome+100bp flanks	34834024	7	32	2.009530e-07	9.186421e-07
TCGA-CD-5804-01A-12D-2053-08	99	88	11	72	1.111111e-01	1	exome+100bp flanks	34834024	15	70	4.306135e-07	2.009530e-06
TCGA-CD-5813-01A-11D-1600-08	191	178	13	142	6.806283e-02	1	exome+100bp flanks	34834024	36	134	1.033472e-06	3.846814e-06
TCGA-CD-8524-01A-11D-2340-08	229	211	18	164	7.860262e-02	1	exome+100bp flanks	34834024	44	155	1.263133e-06	4.449673e-06
TCGA-CD-8525-01A-11D-2340-08	136	122	14	92	1.029412e-01	1	exome+100bp flanks	34834024	30	88	8.612269e-07	2.526266e-06
TCGA-CD-8526-01A-11D-2340-08	89	79	10	67	1.123596e-01	1	exome+100bp flanks	34834024	12	61	3.444908e-07	1.751161e-06
TCGA-CD-8527-01A-11D-2340-08	327	298	29	224	8.868502e-02	1	exome+100bp flanks	34834024	71	211	2.038237e-06	6.057296e-06
TCGA-CD-8528-01A-11D-2340-08	169	153	16	118	9.467456e-02	1	exome+100bp flanks	34834024	33	112	9.473496e-07	3.215247e-06
TCGA-CD-8529-01A-11D-2340-08	541	508	33	398	6.099815e-02	1	exome+100bp flanks	34834024	106	378	3.043002e-06	1.085146e-05
TCGA-CD-8530-01A-11D-2340-08	146	132	14	97	9.589041e-02	1	exome+100bp flanks	34834024	34	91	9.760572e-07	2.612388e-06
TCGA-CD-8531-01A-11D-2340-08	331	302	29	230	8.761329e-02	1	exome+100bp flanks	34834024	69	217	1.980822e-06	6.229542e-06
TCGA-CD-8532-01A-11D-2340-08	76	67	9	49	1.184211e-01	1	exome+100bp flanks	34834024	15	45	4.306135e-07	1.291840e-06
TCGA-CD-8533-01A-11D-2340-08	137	133	4	92	2.919708e-02	0	coding only	34834024	36	89	1.033472e-06	2.554973e-06
TCGA-CD-8534-01A-11D-2340-08	100	91	9	70	9.000000e-02	1	exome+100bp flanks	34834024	21	68	6.028589e-07	1.952114e-06
TCGA-CD-8535-01A-11D-2340-08	354	329	25	240	7.062147e-02	1	exome+100bp flanks	34834024	87	224	2.497558e-06	6.430495e-06
TCGA-CD-8536-01A-11D-2340-08	1188	1065	123	853	1.035354e-01	1	exome+100bp flanks	34834024	201	792	5.770221e-06	2.273639e-05
TCGA-CD-A486-01A-11D-A24D-08	130	118	12	95	9.230769e-02	1	exome+100bp flanks	34834024	22	90	6.315664e-07	2.583681e-06
TCGA-CD-A487-01A-21D-A24D-08	238	223	15	176	6.302521e-02	1	exome+100bp flanks	34834024	42	168	1.205718e-06	4.822871e-06
TCGA-CD-A489-01A-11D-A24D-08	103	90	13	69	1.262136e-01	1	exome+100bp flanks	34834024	20	67	5.741513e-07	1.923407e-06
TCGA-CD-A48A-01A-12D-A24D-08	300	272	28	217	9.333333e-02	1	exome+100bp flanks	34834024	51	198	1.464086e-06	5.684098e-06
TCGA-CD-A48C-01A-11D-A24D-08	266	243	23	182	8.646617e-02	1	exome+100bp flanks	34834024	58	175	1.665039e-06	5.023824e-06
TCGA-CD-A4MG-01A-11D-A25D-08	3565	3246	319	2537	8.948107e-02	1	exome+100bp flanks	34834024	675	2399	1.937761e-05	6.886945e-05
TCGA-CD-A4MH-01A-11D-A25D-08	119	108	11	75	9.243697e-02	1	exome+100bp flanks	34834024	31	71	8.899345e-07	2.038237e-06
TCGA-CD-A4MI-01A-21D-A25D-08	1353	1266	87	986	6.430155e-02	1	exome+100bp flanks	34834024	267	927	7.664920e-06	2.661191e-05
TCGA-CD-A4MJ-01A-11D-A25D-08	886	806	80	646	9.029345e-02	1	exome+100bp flanks	34834024	154	603	4.420965e-06	1.731066e-05
TCGA-CG-4300-01A-01D-1158-08	140	129	11	100	7.857143e-02	1	exome+100bp flanks	34834024	29	93	8.325194e-07	2.669804e-06
TCGA-CG-4301-01A-01D-1158-08	68	62	6	46	8.823529e-02	1	exome+100bp flanks	34834024	16	45	4.593210e-07	1.291840e-06
TCGA-CG-4304-01A-01D-1158-08	99	93	6	67	6.060606e-02	1	exome+100bp flanks	34834024	26	63	7.463967e-07	1.808577e-06
TCGA-CG-4305-01A-01D-1158-08	1611	1459	152	1115	9.435133e-02	1	exome+100bp flanks	34834024	323	1052	9.272543e-06	3.020036e-05
TCGA-CG-4306-01A-01D-1158-08	1493	1332	161	1045	1.078366e-01	1	exome+100bp flanks	34834024	273	976	7.837165e-06	2.801858e-05
TCGA-CG-4436-01A-01D-1158-08	224	207	17	160	7.589286e-02	1	exome+100bp flanks	34834024	45	147	1.291840e-06	4.220012e-06
TCGA-CG-4437-01A-01D-1800-08	592	567	25	455	4.222973e-02	1	exome+100bp flanks	34834024	108	430	3.100417e-06	1.234425e-05
TCGA-CG-4438-01A-01D-1158-08	161	149	12	119	7.453416e-02	1	exome+100bp flanks	34834024	30	110	8.612269e-07	3.157832e-06
TCGA-CG-4440-01A-01D-1158-08	156	143	13	120	8.333333e-02	1	exome+100bp flanks	34834024	21	115	6.028589e-07	3.301370e-06
TCGA-CG-4441-01A-01D-1800-08	133	123	10	92	7.518797e-02	1	exome+100bp flanks	34834024	30	89	8.612269e-07	2.554973e-06
TCGA-CG-4442-01A-01D-1158-08	1870	1622	248	1260	1.326203e-01	1	exome+100bp flanks	34834024	340	1188	9.760572e-06	3.410459e-05
TCGA-CG-4443-01A-01D-1158-08	112	107	5	78	4.464286e-02	1	exome+100bp flanks	34834024	29	73	8.325194e-07	2.095652e-06
TCGA-CG-4444-01A-01D-1158-08	205	190	15	139	7.317073e-02	1	exome+100bp flanks	34834024	46	136	1.320548e-06	3.904229e-06
TCGA-CG-4449-01A-01D-1158-08	129	112	17	92	1.317829e-01	1	exome+100bp flanks	34834024	19	85	5.454437e-07	2.440143e-06
TCGA-CG-4455-01A-01D-1158-08	47	46	1	31	2.127660e-02	1	exome+100bp flanks	34834024	13	30	3.731983e-07	8.612269e-07
TCGA-CG-4460-01A-01D-1158-08	2220	2155	65	1639	2.927928e-02	0	coding only	34834024	495	1537	1.421024e-05	4.412353e-05
TCGA-CG-4462-01A-01D-1158-08	85	82	3	57	3.529412e-02	1	exome+100bp flanks	34834024	22	54	6.315664e-07	1.550208e-06
TCGA-CG-4465-01A-01D-1158-08	758	713	45	558	5.936675e-02	1	exome+100bp flanks	34834024	147	527	4.220012e-06	1.512889e-05
TCGA-CG-4466-01A-01D-1158-08	245	225	20	171	8.163265e-02	1	exome+100bp flanks	34834024	51	163	1.464086e-06	4.679333e-06
TCGA-CG-4469-01A-01D-1158-08	355	336	19	267	5.352113e-02	1	exome+100bp flanks	34834024	65	256	1.865992e-06	7.349137e-06
TCGA-CG-4474-01A-02D-1158-08	107	101	6	75	5.607477e-02	1	exome+100bp flanks	34834024	23	71	6.602740e-07	2.038237e-06
TCGA-CG-4475-01A-01D-1158-08	67	64	3	50	4.477612e-02	1	exome+100bp flanks	34834024	13	45	3.731983e-07	1.291840e-06
TCGA-CG-4476-01A-01D-1158-08	140	135	5	114	3.571429e-02	1	exome+100bp flanks	34834024	20	105	5.741513e-07	3.014294e-06
TCGA-CG-4477-01A-01D-1158-08	139	130	9	115	6.474820e-02	1	exome+100bp flanks	34834024	15	107	4.306135e-07	3.071709e-06
TCGA-CG-5716-01A-21D-1800-08	16	16	0	14	0	1	exome+100bp flanks	34834024	2	14	5.741513e-08	4.019059e-07
TCGA-CG-5717-01A-11D-1600-08	110	106	4	80	3.636364e-02	1	exome+100bp flanks	34834024	26	77	7.463967e-07	2.210482e-06
TCGA-CG-5718-01A-11D-1600-08	108	101	7	81	6.481481e-02	1	exome+100bp flanks	34834024	19	73	5.454437e-07	2.095652e-06
TCGA-CG-5719-01A-11D-1600-08	77	75	2	56	2.597403e-02	1	exome+100bp flanks	34834024	17	56	4.880286e-07	1.607624e-06
TCGA-CG-5720-01A-11D-1600-08	86	85	1	62	1.162791e-02	1	exome+100bp flanks	34834024	22	58	6.315664e-07	1.665039e-06
TCGA-CG-5721-01A-11D-1600-08	5044	4798	246	3696	4.877082e-02	1	exome+100bp flanks	34834024	1039	3499	2.982716e-05	1.004478e-04
TCGA-CG-5722-01A-21D-1600-08	100	98	2	73	2.000000e-02	0	coding only	34834024	23	71	6.602740e-07	2.038237e-06
TCGA-CG-5723-01A-11D-1600-08	2103	1993	110	1567	5.230623e-02	1	exome+100bp flanks	34834024	409	1478	1.174139e-05	4.242978e-05
TCGA-CG-5724-01A-11D-1600-08	129	118	11	91	8.527132e-02	1	exome+100bp flanks	34834024	25	82	7.176891e-07	2.354020e-06
TCGA-CG-5725-01A-11D-1600-08	108	103	5	96	4.629630e-02	1	exome+100bp flanks	34834024	6	92	1.722454e-07	2.641096e-06
TCGA-CG-5726-01A-11D-1600-08	1534	1441	93	1119	6.062581e-02	1	exome+100bp flanks	34834024	308	1055	8.841930e-06	3.028648e-05
TCGA-CG-5727-01A-11D-1600-08	185	176	9	126	4.864865e-02	1	exome+100bp flanks	34834024	50	122	1.435378e-06	3.502323e-06
TCGA-CG-5728-01A-11D-1600-08	1893	1702	191	1315	1.008980e-01	1	exome+100bp flanks	34834024	368	1236	1.056438e-05	3.548255e-05
TCGA-CG-5730-01A-11D-1600-08	191	177	14	123	7.329843e-02	1	exome+100bp flanks	34834024	51	119	1.464086e-06	3.416200e-06
TCGA-CG-5732-01A-11D-1600-08	68	65	3	46	4.411765e-02	1	exome+100bp flanks	34834024	18	45	5.167362e-07	1.291840e-06
TCGA-CG-5733-01A-11D-1600-08	1311	1237	74	946	5.644546e-02	1	exome+100bp flanks	34834024	278	907	7.980703e-06	2.603776e-05
TCGA-CG-5734-01A-11D-1600-08	101	93	8	73	7.920792e-02	1	exome+100bp flanks	34834024	20	70	5.741513e-07	2.009530e-06
TCGA-D7-5577-01A-01D-1600-08	140	134	6	109	4.285714e-02	1	exome+100bp flanks	34834024	25	102	7.176891e-07	2.928172e-06
TCGA-D7-5578-01A-01D-1600-08	259	249	10	179	3.861004e-02	1	exome+100bp flanks	34834024	69	171	1.980822e-06	4.908994e-06
TCGA-D7-5579-01A-01D-1600-08	175	171	4	139	2.285714e-02	0	coding only	34834024	29	132	8.325194e-07	3.789399e-06
TCGA-D7-6518-01A-11D-1800-08	97	95	2	68	2.061856e-02	1	exome+100bp flanks	34834024	25	65	7.176891e-07	1.865992e-06
TCGA-D7-6519-01A-11D-1800-08	67	63	4	50	5.970149e-02	1	exome+100bp flanks	34834024	12	48	3.444908e-07	1.377963e-06
TCGA-D7-6520-01A-11D-1800-08	79	74	5	54	6.329114e-02	1	exome+100bp flanks	34834024	17	54	4.880286e-07	1.550208e-06
TCGA-D7-6521-01A-11D-1800-08	88	87	1	75	1.136364e-02	1	exome+100bp flanks	34834024	12	70	3.444908e-07	2.009530e-06
TCGA-D7-6522-01A-11D-1800-08	50	46	4	35	8.000000e-02	1	exome+100bp flanks	34834024	11	32	3.157832e-07	9.186421e-07
TCGA-D7-6524-01A-11D-1800-08	127	119	8	89	6.299213e-02	1	exome+100bp flanks	34834024	28	84	8.038118e-07	2.411435e-06
TCGA-D7-6525-01A-11D-1800-08	199	190	9	137	4.522613e-02	1	exome+100bp flanks	34834024	51	130	1.464086e-06	3.731983e-06
TCGA-D7-6526-01A-11D-1800-08	253	241	12	184	4.743083e-02	1	exome+100bp flanks	34834024	53	174	1.521501e-06	4.995116e-06
TCGA-D7-6527-01A-11D-1800-08	248	235	13	187	5.241935e-02	1	exome+100bp flanks	34834024	46	181	1.320548e-06	5.196069e-06
TCGA-D7-6528-01A-11D-1800-08	375	358	17	283	4.533333e-02	1	exome+100bp flanks	34834024	68	266	1.952114e-06	7.636212e-06
TCGA-D7-6815-01A-11D-1882-08	173	157	16	118	9.248555e-02	1	exome+100bp flanks	34834024	37	113	1.062180e-06	3.243955e-06
TCGA-D7-6817-01A-11D-1882-08	96	91	5	70	5.208333e-02	1	exome+100bp flanks	34834024	20	68	5.741513e-07	1.952114e-06
TCGA-D7-6818-01A-11D-1882-08	178	173	5	143	2.808989e-02	0	coding only	34834024	30	136	8.612269e-07	3.904229e-06
TCGA-D7-6820-01A-11D-1882-08	122	102	20	73	1.639344e-01	1	exome+100bp flanks	34834024	27	69	7.751042e-07	1.980822e-06
TCGA-D7-6822-01A-11D-1882-08	281	264	17	220	6.049822e-02	1	exome+100bp flanks	34834024	40	214	1.148303e-06	6.143419e-06
TCGA-D7-8570-01A-11D-2340-08	148	142	6	104	4.054054e-02	1	exome+100bp flanks	34834024	37	101	1.062180e-06	2.899464e-06
TCGA-D7-8572-01A-11D-2340-08	249	228	21	176	8.433735e-02	1	exome+100bp flanks	34834024	50	171	1.435378e-06	4.908994e-06
TCGA-D7-8573-01A-11D-2340-08	132	121	11	91	8.333333e-02	1	exome+100bp flanks	34834024	29	89	8.325194e-07	2.554973e-06
TCGA-D7-8574-01A-13D-2340-08	71	63	8	50	1.126761e-01	1	exome+100bp flanks	34834024	11	48	3.157832e-07	1.377963e-06
TCGA-D7-8575-01A-11D-2340-08	71	66	5	52	7.042254e-02	1	exome+100bp flanks	34834024	13	50	3.731983e-07	1.435378e-06
TCGA-D7-8576-01A-11D-2340-08	95	85	10	67	1.052632e-01	1	exome+100bp flanks	34834024	18	59	5.167362e-07	1.693746e-06
TCGA-D7-8578-01A-21D-2340-08	70	67	3	53	4.285714e-02	1	exome+100bp flanks	34834024	13	46	3.731983e-07	1.320548e-06
TCGA-D7-8579-01A-11D-2340-08	151	137	14	103	9.271523e-02	1	exome+100bp flanks	34834024	32	94	9.186421e-07	2.698511e-06
TCGA-D7-A4YT-01A-11D-A25D-08	362	328	34	243	9.392265e-02	1	exome+100bp flanks	34834024	85	228	2.440143e-06	6.545325e-06
TCGA-D7-A4YU-01A-21D-A25D-08	246	222	24	184	9.756098e-02	1	exome+100bp flanks	34834024	36	171	1.033472e-06	4.908994e-06
TCGA-D7-A4YV-01A-11D-A25D-08	1202	1096	106	850	8.818636e-02	1	exome+100bp flanks	34834024	233	794	6.688863e-06	2.279381e-05
TCGA-D7-A4YX-01A-11D-A25D-08	98	95	3	73	3.061224e-02	1	exome+100bp flanks	34834024	22	67	6.315664e-07	1.923407e-06
TCGA-D7-A4YY-01A-11D-A25D-08	638	567	71	414	1.112853e-01	1	exome+100bp flanks	34834024	146	382	4.191304e-06	1.096629e-05
TCGA-D7-A4Z0-01A-22D-A25D-08	356	332	24	272	6.741573e-02	1	exome+100bp flanks	34834024	56	258	1.607624e-06	7.406552e-06
TCGA-D7-A6ET-01A-32D-A32N-08	58	47	11	32	1.896552e-01	1	exome+100bp flanks	34834024	14	29	4.019059e-07	8.325194e-07
TCGA-D7-A6EV-01A-11D-A31L-08	224	204	20	157	8.928571e-02	1	exome+100bp flanks	34834024	44	148	1.263133e-06	4.248720e-06
TCGA-D7-A6EX-01A-11D-A31L-08	157	144	13	113	8.280255e-02	1	exome+100bp flanks	34834024	29	109	8.325194e-07	3.129125e-06
TCGA-D7-A6EY-01A-21D-A31L-08	1882	1731	151	1367	8.023379e-02	1	exome+100bp flanks	34834024	346	1277	9.932817e-06	3.665956e-05
TCGA-D7-A6EZ-01A-11D-A31L-08	327	300	27	248	8.256881e-02	1	exome+100bp flanks	34834024	51	235	1.464086e-06	6.746278e-06
TCGA-D7-A6F0-01A-11D-A31L-08	167	155	12	113	7.185629e-02	1	exome+100bp flanks	34834024	39	108	1.119595e-06	3.100417e-06
TCGA-D7-A6F2-01A-12D-A31L-08	97	88	9	73	9.278351e-02	1	exome+100bp flanks	34834024	14	67	4.019059e-07	1.923407e-06
TCGA-D7-A747-01A-22D-A33T-08	127	115	12	97	9.448819e-02	1	exome+100bp flanks	34834024	16	93	4.593210e-07	2.669804e-06
TCGA-D7-A748-01A-12D-A32N-08	61	55	6	42	9.836066e-02	1	exome+100bp flanks	34834024	13	36	3.731983e-07	1.033472e-06
TCGA-D7-A74A-01A-11D-A32N-08	191	170	21	128	1.099476e-01	1	exome+100bp flanks	34834024	38	121	1.090887e-06	3.473615e-06
TCGA-D7-A74B-01A-12D-A33T-08	42	41	1	29	2.380952e-02	1	exome+100bp flanks	34834024	11	28	3.157832e-07	8.038118e-07
TCGA-EQ-5647-01A-01D-1600-08	97	94	3	70	3.092784e-02	1	exome+100bp flanks	34834024	23	66	6.602740e-07	1.894699e-06
TCGA-EQ-8122-01A-11D-2340-08	235	211	24	159	1.021277e-01	1	exome+100bp flanks	34834024	49	148	1.406671e-06	4.248720e-06
TCGA-EQ-A4SO-01A-11D-A25D-08	238	212	26	172	1.092437e-01	1	exome+100bp flanks	34834024	37	162	1.062180e-06	4.650625e-06
TCGA-F1-6177-01A-11D-1800-08	1798	1575	223	1211	1.240267e-01	1	exome+100bp flanks	34834024	349	1127	1.001894e-05	3.235343e-05
TCGA-F1-6874-01A-11D-1882-08	1134	1074	60	836	5.291005e-02	1	exome+100bp flanks	34834024	229	792	6.574032e-06	2.273639e-05
TCGA-F1-6875-01A-11D-2053-08	102	97	5	78	4.901961e-02	1	exome+100bp flanks	34834024	19	74	5.454437e-07	2.124360e-06
TCGA-F1-A448-01A-11D-A24D-08	819	769	50	583	6.105006e-02	1	exome+100bp flanks	34834024	176	541	5.052531e-06	1.553079e-05
TCGA-F1-A72C-01A-21D-A33T-08	78	69	9	53	1.153846e-01	1	exome+100bp flanks	34834024	15	50	4.306135e-07	1.435378e-06
TCGA-FP-7735-01A-11D-2053-08	83	78	5	58	6.024096e-02	1	exome+100bp flanks	34834024	17	55	4.880286e-07	1.578916e-06
TCGA-FP-7829-01A-11D-2053-08	305	286	19	215	6.229508e-02	1	exome+100bp flanks	34834024	70	203	2.009530e-06	5.827636e-06
TCGA-FP-7916-01A-11D-2201-08	133	130	3	98	2.255639e-02	0	coding only	34834024	31	91	8.899345e-07	2.612388e-06
TCGA-FP-7998-01A-11D-2201-08	84	77	7	58	8.333333e-02	1	exome+100bp flanks	34834024	18	56	5.167362e-07	1.607624e-06
TCGA-FP-8099-01A-11D-2340-08	191	177	14	128	7.329843e-02	1	exome+100bp flanks	34834024	47	122	1.349256e-06	3.502323e-06
TCGA-FP-8209-01A-11D-2340-08	21	20	1	17	4.761905e-02	1	exome+100bp flanks	34834024	3	17	8.612269e-08	4.880286e-07
TCGA-FP-8210-01A-11D-2340-08	10	10	0	8	0	1	exome+100bp flanks	34834024	2	8	5.741513e-08	2.296605e-07
TCGA-FP-8211-01A-11D-2340-08	158	144	14	122	8.860759e-02	1	exome+100bp flanks	34834024	20	118	5.741513e-07	3.387493e-06
TCGA-FP-8631-01A-11D-2394-08	132	122	10	93	7.575758e-02	1	exome+100bp flanks	34834024	27	89	7.751042e-07	2.554973e-06
TCGA-FP-A4BE-01A-12D-A24D-08	2001	1805	196	1398	9.795102e-02	1	exome+100bp flanks	34834024	383	1324	1.099500e-05	3.800882e-05
TCGA-FP-A4BF-01A-12D-A24D-08	139	130	9	101	6.474820e-02	1	exome+100bp flanks	34834024	27	97	7.751042e-07	2.784634e-06
TCGA-FP-A8CX-01A-11D-A364-08	95	88	7	70	7.368421e-02	1	exome+100bp flanks	34834024	16	66	4.593210e-07	1.894699e-06
TCGA-FP-A9TM-01A-11D-A397-08	186	172	14	134	7.526882e-02	1	exome+100bp flanks	34834024	37	126	1.062180e-06	3.617153e-06
TCGA-HF-7131-01A-11D-2053-08	108	103	5	77	4.629630e-02	1	exome+100bp flanks	34834024	23	71	6.602740e-07	2.038237e-06
TCGA-HF-7132-01A-11D-2053-08	1673	1555	118	1205	7.053198e-02	1	exome+100bp flanks	34834024	331	1135	9.502204e-06	3.258309e-05
TCGA-HF-7133-01A-11D-2053-08	116	101	15	79	1.293103e-01	1	exome+100bp flanks	34834024	20	73	5.741513e-07	2.095652e-06
TCGA-HF-7134-01A-11D-2053-08	315	307	8	239	2.539683e-02	0	coding only	34834024	61	223	1.751161e-06	6.401787e-06
TCGA-HF-7136-01A-11D-2053-08	116	112	4	89	3.448276e-02	1	exome+100bp flanks	34834024	23	85	6.602740e-07	2.440143e-06
TCGA-HF-A5NB-01A-11D-A31L-08	1935	1669	266	1306	1.374677e-01	1	exome+100bp flanks	34834024	344	1226	9.875402e-06	3.519547e-05
TCGA-HJ-7597-01A-21D-2201-08	1044	981	63	729	6.034483e-02	1	exome+100bp flanks	34834024	244	687	7.004646e-06	1.972210e-05
TCGA-HU-8238-01A-11D-2340-08	188	181	7	143	3.723404e-02	1	exome+100bp flanks	34834024	36	135	1.033472e-06	3.875521e-06
TCGA-HU-8243-01A-11D-2340-08	192	174	18	129	9.375000e-02	1	exome+100bp flanks	34834024	44	121	1.263133e-06	3.473615e-06
TCGA-HU-8244-01A-11D-2340-08	146	137	9	95	6.164384e-02	1	exome+100bp flanks	34834024	40	90	1.148303e-06	2.583681e-06
TCGA-HU-8245-01A-11D-2340-08	119	107	12	83	1.008403e-01	1	exome+100bp flanks	34834024	23	77	6.602740e-07	2.210482e-06
TCGA-HU-8249-01A-11D-2340-08	184	171	13	130	7.065217e-02	1	exome+100bp flanks	34834024	40	125	1.148303e-06	3.588446e-06
TCGA-HU-8602-01A-11D-2394-08	2248	2010	238	1552	1.058719e-01	1	exome+100bp flanks	34834024	430	1451	1.234425e-05	4.165468e-05
TCGA-HU-8604-01A-11D-2394-08	271	256	15	190	5.535055e-02	1	exome+100bp flanks	34834024	64	182	1.837284e-06	5.224777e-06
TCGA-HU-8608-01A-11D-2394-08	118	109	9	88	7.627119e-02	1	exome+100bp flanks	34834024	20	84	5.741513e-07	2.411435e-06
TCGA-HU-8610-01A-22D-2394-08	108	95	13	72	1.203704e-01	1	exome+100bp flanks	34834024	23	69	6.602740e-07	1.980822e-06
TCGA-HU-A4G2-01A-11D-A25D-08	78	75	3	51	3.846154e-02	1	exome+100bp flanks	34834024	21	51	6.028589e-07	1.464086e-06
TCGA-HU-A4G3-01A-11D-A24D-08	142	133	9	97	6.338028e-02	1	exome+100bp flanks	34834024	35	92	1.004765e-06	2.641096e-06
TCGA-HU-A4G6-01A-11D-A24D-08	114	100	14	77	1.228070e-01	1	exome+100bp flanks	34834024	22	72	6.315664e-07	2.066945e-06
TCGA-HU-A4G8-01A-11D-A25D-08	2031	1859	172	1435	8.468735e-02	1	exome+100bp flanks	34834024	404	1366	1.159786e-05	3.921453e-05
TCGA-HU-A4G9-01A-11D-A24D-08	1084	942	142	720	1.309963e-01	1	exome+100bp flanks	34834024	212	682	6.086004e-06	1.957856e-05
TCGA-HU-A4GC-01A-12D-A25D-08	192	175	17	128	8.854167e-02	1	exome+100bp flanks	34834024	44	121	1.263133e-06	3.473615e-06
TCGA-HU-A4GD-01A-11D-A25D-08	137	114	23	83	1.678832e-01	1	exome+100bp flanks	34834024	28	79	8.038118e-07	2.267898e-06
TCGA-HU-A4GF-01A-11D-A24D-08	185	178	7	136	3.783784e-02	1	exome+100bp flanks	34834024	41	128	1.177010e-06	3.674568e-06
TCGA-HU-A4GH-01A-11D-A24D-08	894	841	53	700	5.928412e-02	1	exome+100bp flanks	34834024	126	659	3.617153e-06	1.891829e-05
TCGA-HU-A4GJ-01A-11D-A25D-08	6	5	1	4	1.666667e-01	1	exome+100bp flanks	34834024	1	3	2.870756e-08	8.612269e-08
TCGA-HU-A4GN-01A-11D-A25D-08	1606	1484	122	1145	7.596513e-02	1	exome+100bp flanks	34834024	322	1084	9.243836e-06	3.111900e-05
TCGA-HU-A4GP-01A-11D-A25D-08	278	263	15	196	5.395683e-02	1	exome+100bp flanks	34834024	63	183	1.808577e-06	5.253484e-06
TCGA-HU-A4GQ-01A-11D-A25D-08	2398	2171	227	1671	9.466222e-02	1	exome+100bp flanks	34834024	477	1562	1.369351e-05	4.484122e-05
TCGA-HU-A4GT-01A-21D-A25D-08	2094	1902	192	1461	9.169054e-02	1	exome+100bp flanks	34834024	414	1381	1.188493e-05	3.964515e-05
TCGA-HU-A4GU-01A-11D-A25D-08	1956	1798	158	1341	8.077710e-02	1	exome+100bp flanks	34834024	435	1265	1.248779e-05	3.631507e-05
TCGA-HU-A4GX-01A-12D-A25D-08	1716	1546	170	1197	9.906760e-02	1	exome+100bp flanks	34834024	331	1132	9.502204e-06	3.249696e-05
TCGA-HU-A4GY-01A-21D-A24D-08	96	90	6	72	6.250000e-02	1	exome+100bp flanks	34834024	17	70	4.880286e-07	2.009530e-06
TCGA-HU-A4H0-01A-11D-A25D-08	207	198	9	155	4.347826e-02	1	exome+100bp flanks	34834024	42	146	1.205718e-06	4.191304e-06
TCGA-HU-A4H2-01A-11D-A25D-08	218	193	25	152	1.146789e-01	1	exome+100bp flanks	34834024	38	147	1.090887e-06	4.220012e-06
TCGA-HU-A4H3-01A-21D-A25D-08	1203	1061	142	828	1.180382e-01	1	exome+100bp flanks	34834024	216	777	6.200834e-06	2.230578e-05
TCGA-HU-A4H4-01A-21D-A25D-08	862	801	61	617	7.076566e-02	1	exome+100bp flanks	34834024	171	581	4.908994e-06	1.667910e-05
TCGA-HU-A4H5-01A-21D-A25D-08	333	309	24	247	7.207207e-02	1	exome+100bp flanks	34834024	59	233	1.693746e-06	6.688863e-06
TCGA-HU-A4H6-01A-11D-A25D-08	156	148	8	108	5.128205e-02	1	exome+100bp flanks	34834024	39	103	1.119595e-06	2.956879e-06
TCGA-HU-A4H8-01A-11D-A25D-08	1625	1449	176	1112	1.083077e-01	1	exome+100bp flanks	34834024	322	1049	9.243836e-06	3.011424e-05
TCGA-HU-A4HB-01A-12D-A25D-08	19	17	2	15	1.052632e-01	1	exome+100bp flanks	34834024	2	13	5.741513e-08	3.731983e-07
TCGA-HU-A4HD-01A-11D-A25D-08	243	221	22	169	9.053498e-02	1	exome+100bp flanks	34834024	49	159	1.406671e-06	4.564503e-06
TCGA-IN-7806-01A-11D-2053-08	94	90	4	71	4.255319e-02	1	exome+100bp flanks	34834024	16	70	4.593210e-07	2.009530e-06
TCGA-IN-7808-01A-11D-2201-08	141	131	10	103	7.092199e-02	1	exome+100bp flanks	34834024	27	99	7.751042e-07	2.842049e-06
TCGA-IN-8462-01A-11D-2340-08	176	160	16	124	9.090909e-02	1	exome+100bp flanks	34834024	36	118	1.033472e-06	3.387493e-06
TCGA-IN-8663-01A-11D-2394-08	228	204	24	153	1.052632e-01	1	exome+100bp flanks	34834024	48	142	1.377963e-06	4.076474e-06
TCGA-IN-A6RI-01A-11D-A32N-08	127	116	11	88	8.661417e-02	1	exome+100bp flanks	34834024	26	82	7.463967e-07	2.354020e-06
TCGA-IN-A6RJ-01A-21D-A33T-08	173	163	10	119	5.780347e-02	1	exome+100bp flanks	34834024	44	115	1.263133e-06	3.301370e-06
TCGA-IN-A6RL-01A-11D-A32N-08	576	526	50	409	8.680556e-02	1	exome+100bp flanks	34834024	113	374	3.243955e-06	1.073663e-05
TCGA-IN-A6RN-01A-12D-A33T-08	153	135	18	99	1.176471e-01	1	exome+100bp flanks	34834024	36	89	1.033472e-06	2.554973e-06
TCGA-IN-A6RO-01A-12D-A33T-08	357	328	29	261	8.123249e-02	1	exome+100bp flanks	34834024	65	250	1.865992e-06	7.176891e-06
TCGA-IN-A6RP-01A-21D-A33T-08	214	201	13	161	6.074766e-02	1	exome+100bp flanks	34834024	36	156	1.033472e-06	4.478380e-06
TCGA-IN-A6RR-01A-12D-A32N-08	202	186	16	137	7.920792e-02	1	exome+100bp flanks	34834024	47	130	1.349256e-06	3.731983e-06
TCGA-IN-A6RS-01A-12D-A34U-08	130	114	16	83	1.230769e-01	1	exome+100bp flanks	34834024	30	80	8.612269e-07	2.296605e-06
TCGA-IN-A7NR-01A-11D-A34U-08	95	89	6	67	6.315789e-02	1	exome+100bp flanks	34834024	22	65	6.315664e-07	1.865992e-06
TCGA-IN-A7NT-01A-21D-A34U-08	139	129	10	93	7.194245e-02	1	exome+100bp flanks	34834024	36	85	1.033472e-06	2.440143e-06
TCGA-IN-A7NU-01A-22D-A34U-08	109	97	12	73	1.100917e-01	1	exome+100bp flanks	34834024	24	68	6.889816e-07	1.952114e-06
TCGA-IN-AB1V-01A-21D-A410-08	71	65	6	42	8.450704e-02	1	exome+100bp flanks	34834024	21	42	6.028589e-07	1.205718e-06
TCGA-IN-AB1X-01A-11D-A397-08	137	124	13	104	9.489051e-02	1	exome+100bp flanks	34834024	20	96	5.741513e-07	2.755926e-06
TCGA-IP-7968-01A-11D-2201-08	134	120	14	97	1.044776e-01	1	exome+100bp flanks	34834024	22	93	6.315664e-07	2.669804e-06
TCGA-KB-A6F5-01A-12D-A33T-08	85	75	10	55	1.176471e-01	1	exome+100bp flanks	34834024	17	52	4.880286e-07	1.492793e-06
TCGA-KB-A6F7-01A-12D-A32N-08	144	127	17	99	1.180556e-01	1	exome+100bp flanks	34834024	25	93	7.176891e-07	2.669804e-06
TCGA-KB-A93G-01A-11D-A397-08	101	90	11	68	1.089109e-01	1	exome+100bp flanks	34834024	17	65	4.880286e-07	1.865992e-06
TCGA-KB-A93J-01A-11D-A397-08	172	159	13	148	7.558140e-02	1	exome+100bp flanks	34834024	11	144	3.157832e-07	4.133889e-06
TCGA-MX-A5UG-01A-21D-A31L-08	54	50	4	39	7.407407e-02	1	exome+100bp flanks	34834024	10	37	2.870756e-07	1.062180e-06
TCGA-MX-A5UJ-01A-11D-A31L-08	1933	1739	194	1345	1.003621e-01	1	exome+100bp flanks	34834024	376	1277	1.079404e-05	3.665956e-05
TCGA-MX-A663-01A-11D-A31L-08	103	95	8	80	7.766990e-02	1	exome+100bp flanks	34834024	15	79	4.306135e-07	2.267898e-06
TCGA-MX-A666-01A-11D-A31L-08	143	132	11	103	7.692308e-02	1	exome+100bp flanks	34834024	29	100	8.325194e-07	2.870756e-06
TCGA-R5-A7O7-01A-11D-A33T-08	164	148	16	113	9.756098e-02	1	exome+100bp flanks	34834024	32	108	9.186421e-07	3.100417e-06
TCGA-R5-A7ZE-01B-11D-A34U-08	170	161	9	119	5.294118e-02	1	exome+100bp flanks	34834024	38	112	1.090887e-06	3.215247e-06
TCGA-R5-A7ZF-01A-11D-A34U-08	66	62	4	48	6.060606e-02	1	exome+100bp flanks	34834024	14	46	4.019059e-07	1.320548e-06
TCGA-R5-A7ZI-01A-11D-A34U-08	998	911	87	717	8.717435e-02	1	exome+100bp flanks	34834024	185	672	5.310899e-06	1.929148e-05
TCGA-R5-A7ZR-01A-11D-A34U-08	88	80	8	61	9.090909e-02	1	exome+100bp flanks	34834024	19	59	5.454437e-07	1.693746e-06
TCGA-R5-A804-01A-11D-A364-08	94	87	7	65	7.446809e-02	1	exome+100bp flanks	34834024	21	63	6.028589e-07	1.808577e-06
TCGA-R5-A805-01A-11D-A364-08	140	132	8	105	5.714286e-02	1	exome+100bp flanks	34834024	26	99	7.463967e-07	2.842049e-06
TCGA-RD-A7BS-01A-11D-A32N-08	83	66	17	44	2.048193e-01	1	exome+100bp flanks	34834024	22	42	6.315664e-07	1.205718e-06
TCGA-RD-A7BT-01A-11D-A33T-08	301	284	17	226	5.647841e-02	1	exome+100bp flanks	34834024	55	215	1.578916e-06	6.172126e-06
TCGA-RD-A7BW-01A-11D-A32N-08	100	89	11	66	1.100000e-01	1	exome+100bp flanks	34834024	21	61	6.028589e-07	1.751161e-06
TCGA-RD-A7C1-01A-11D-A32N-08	344	321	23	258	6.686047e-02	1	exome+100bp flanks	34834024	61	239	1.751161e-06	6.861108e-06
TCGA-RD-A8MV-01A-11D-A364-08	83	77	6	69	7.228916e-02	1	exome+100bp flanks	34834024	8	62	2.296605e-07	1.779869e-06
TCGA-RD-A8MW-01A-11D-A364-08	96	88	8	68	8.333333e-02	1	exome+100bp flanks	34834024	20	65	5.741513e-07	1.865992e-06
TCGA-RD-A8N0-01A-12D-A364-08	12	7	5	6	4.166667e-01	1	exome+100bp flanks	34834024	1	5	2.870756e-08	1.435378e-07
TCGA-RD-A8N1-01A-12D-A364-08	119	110	9	92	7.563025e-02	1	exome+100bp flanks	34834024	18	86	5.167362e-07	2.468851e-06
TCGA-RD-A8N2-01A-12D-A364-08	7	6	1	4	1.428571e-01	1	exome+100bp flanks	34834024	2	3	5.741513e-08	8.612269e-08
TCGA-RD-A8N4-01A-21D-A364-08	7	5	2	4	2.857143e-01	1	exome+100bp flanks	34834024	1	2	2.870756e-08	5.741513e-08
TCGA-RD-A8N5-01A-12D-A364-08	42	38	4	28	9.523810e-02	1	exome+100bp flanks	34834024	10	27	2.870756e-07	7.751042e-07
TCGA-RD-A8N6-01A-11D-A364-08	177	166	11	124	6.214689e-02	1	exome+100bp flanks	34834024	40	121	1.148303e-06	3.473615e-06
TCGA-RD-A8N9-01A-12D-A397-08	159	147	12	102	7.547170e-02	1	exome+100bp flanks	34834024	40	96	1.148303e-06	2.755926e-06
TCGA-SW-A7EA-01A-12D-A34U-08	772	673	99	529	1.282383e-01	1	exome+100bp flanks	34834024	135	497	3.875521e-06	1.426766e-05
TCGA-SW-A7EB-01A-11D-A34U-08	152	141	11	116	7.236842e-02	1	exome+100bp flanks	34834024	23	109	6.602740e-07	3.129125e-06
TCGA-VQ-A8DL-01A-11D-A364-08	164	156	8	141	4.878049e-02	1	exome+100bp flanks	34834024	14	132	4.019059e-07	3.789399e-06
TCGA-VQ-A8DT-01A-11D-A364-08	198	184	14	154	7.070707e-02	1	exome+100bp flanks	34834024	28	147	8.038118e-07	4.220012e-06
TCGA-VQ-A8DU-01A-11D-A364-08	173	157	16	127	9.248555e-02	1	exome+100bp flanks	34834024	27	119	7.751042e-07	3.416200e-06
TCGA-VQ-A8DV-01A-12D-A364-08	87	77	10	62	1.149425e-01	1	exome+100bp flanks	34834024	13	57	3.731983e-07	1.636331e-06
TCGA-VQ-A8DZ-01A-11D-A364-08	99	86	13	71	1.313131e-01	1	exome+100bp flanks	34834024	15	67	4.306135e-07	1.923407e-06
TCGA-VQ-A8E2-01A-11D-A364-08	136	128	8	100	5.882353e-02	1	exome+100bp flanks	34834024	22	89	6.315664e-07	2.554973e-06
TCGA-VQ-A8E7-01B-11D-A410-08	117	108	9	75	7.692308e-02	1	exome+100bp flanks	34834024	32	70	9.186421e-07	2.009530e-06
TCGA-VQ-A8P2-01A-11D-A364-08	8694	8063	631	6106	7.257879e-02	1	exome+100bp flanks	34834024	1865	5783	5.353961e-05	1.660158e-04
TCGA-VQ-A8P3-01A-11D-A364-08	319	301	18	241	5.642633e-02	1	exome+100bp flanks	34834024	57	230	1.636331e-06	6.602740e-06
TCGA-VQ-A8PE-01A-11D-A410-08	152	142	10	108	6.578947e-02	1	exome+100bp flanks	34834024	33	103	9.473496e-07	2.956879e-06
TCGA-VQ-A8PK-01A-12D-A410-08	106	95	11	77	1.037736e-01	1	exome+100bp flanks	34834024	17	77	4.880286e-07	2.210482e-06
TCGA-VQ-A8PM-01A-21D-A410-08	69	61	8	44	1.159420e-01	1	exome+100bp flanks	34834024	15	43	4.306135e-07	1.234425e-06
TCGA-VQ-A8PQ-01A-11D-A410-08	23	21	2	16	8.695652e-02	1	exome+100bp flanks	34834024	5	14	1.435378e-07	4.019059e-07
TCGA-VQ-A91Q-01A-12D-A410-08	121	111	10	87	8.264463e-02	1	exome+100bp flanks	34834024	24	81	6.889816e-07	2.325313e-06
TCGA-VQ-A91U-01A-11D-A410-08	169	159	10	120	5.917160e-02	1	exome+100bp flanks	34834024	38	110	1.090887e-06	3.157832e-06
TCGA-VQ-A91V-01A-11D-A410-08	276	263	13	213	4.710145e-02	1	exome+100bp flanks	34834024	46	198	1.320548e-06	5.684098e-06
TCGA-VQ-A92D-01A-11D-A410-08	156	146	10	108	6.410256e-02	1	exome+100bp flanks	34834024	37	98	1.062180e-06	2.813341e-06
TCGA-VQ-A94T-01A-11D-A410-08	95	90	5	65	5.263158e-02	1	exome+100bp flanks	34834024	23	63	6.602740e-07	1.808577e-06
TCGA-VQ-AA64-01A-11D-A410-08	309	280	29	217	9.385113e-02	1	exome+100bp flanks	34834024	61	205	1.751161e-06	5.885051e-06
TCGA-VQ-AA68-01A-11D-A410-08	187	176	11	144	5.882353e-02	1	exome+100bp flanks	34834024	32	139	9.186421e-07	3.990352e-06
TCGA-VQ-AA69-01A-11D-A410-08	82	69	13	52	1.585366e-01	1	exome+100bp flanks	34834024	16	50	4.593210e-07	1.435378e-06
TCGA-VQ-AA6A-01A-11D-A410-08	116	103	13	77	1.120690e-01	1	exome+100bp flanks	34834024	25	72	7.176891e-07	2.066945e-06
TCGA-VQ-AA6B-01A-11D-A410-08	95	91	4	77	4.210526e-02	1	exome+100bp flanks	34834024	13	72	3.731983e-07	2.066945e-06
TCGA-VQ-AA6F-01A-31D-A410-08	58	52	6	44	1.034483e-01	1	exome+100bp flanks	34834024	7	42	2.009530e-07	1.205718e-06
TCGA-VQ-AA6G-01A-11D-A410-08	144	135	9	107	6.250000e-02	1	exome+100bp flanks	34834024	27	104	7.751042e-07	2.985587e-06
TCGA-VQ-AA6I-01A-11D-A410-08	129	113	16	87	1.240310e-01	1	exome+100bp flanks	34834024	25	81	7.176891e-07	2.325313e-06
TCGA-VQ-AA6J-01A-11D-A410-08	159	148	11	108	6.918239e-02	1	exome+100bp flanks	34834024	37	103	1.062180e-06	2.956879e-06
TCGA-VQ-AA6K-01A-11D-A410-08	90	84	6	71	6.666667e-02	1	exome+100bp flanks	34834024	11	68	3.157832e-07	1.952114e-06
TCGA-ZA-A8F6-01A-23D-A364-08	49	46	3	39	6.122449e-02	1	exome+100bp flanks	34834024	7	38	2.009530e-07	1.090887e-06